Multiple sequence alignment - TraesCS2B01G219300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G219300 chr2B 100.000 3267 0 0 1 3267 209435682 209438948 0.000000e+00 6034
1 TraesCS2B01G219300 chr2B 91.294 402 12 4 47 444 209402713 209403095 8.030000e-146 527
2 TraesCS2B01G219300 chr2B 98.485 66 1 0 1 66 209402567 209402632 2.060000e-22 117
3 TraesCS2B01G219300 chr2A 90.473 3338 151 63 1 3267 150125784 150122543 0.000000e+00 4248
4 TraesCS2B01G219300 chr2D 92.379 2362 94 27 928 3267 151325590 151327887 0.000000e+00 3286
5 TraesCS2B01G219300 chr2D 86.120 915 48 30 3 888 151324722 151325586 0.000000e+00 913
6 TraesCS2B01G219300 chr1A 92.308 611 38 5 1138 1743 548995834 548995228 0.000000e+00 859
7 TraesCS2B01G219300 chr7A 91.857 614 38 5 1138 1743 465791406 465792015 0.000000e+00 846
8 TraesCS2B01G219300 chr4A 91.326 611 44 5 1138 1743 567327175 567326569 0.000000e+00 826
9 TraesCS2B01G219300 chr5B 85.877 616 40 12 1138 1743 297127731 297127153 2.150000e-171 612
10 TraesCS2B01G219300 chr6B 83.838 198 32 0 1170 1367 642915747 642915944 4.300000e-44 189
11 TraesCS2B01G219300 chr6A 83.838 198 32 0 1170 1367 571795532 571795729 4.300000e-44 189
12 TraesCS2B01G219300 chr6D 83.333 198 33 0 1170 1367 427088240 427088437 2.000000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G219300 chr2B 209435682 209438948 3266 False 6034.0 6034 100.0000 1 3267 1 chr2B.!!$F1 3266
1 TraesCS2B01G219300 chr2B 209402567 209403095 528 False 322.0 527 94.8895 1 444 2 chr2B.!!$F2 443
2 TraesCS2B01G219300 chr2A 150122543 150125784 3241 True 4248.0 4248 90.4730 1 3267 1 chr2A.!!$R1 3266
3 TraesCS2B01G219300 chr2D 151324722 151327887 3165 False 2099.5 3286 89.2495 3 3267 2 chr2D.!!$F1 3264
4 TraesCS2B01G219300 chr1A 548995228 548995834 606 True 859.0 859 92.3080 1138 1743 1 chr1A.!!$R1 605
5 TraesCS2B01G219300 chr7A 465791406 465792015 609 False 846.0 846 91.8570 1138 1743 1 chr7A.!!$F1 605
6 TraesCS2B01G219300 chr4A 567326569 567327175 606 True 826.0 826 91.3260 1138 1743 1 chr4A.!!$R1 605
7 TraesCS2B01G219300 chr5B 297127153 297127731 578 True 612.0 612 85.8770 1138 1743 1 chr5B.!!$R1 605

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 1090 0.165511 CGCTCAGCTCAGCAAAACTC 59.834 55.0 11.18 0.0 39.62 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2806 3022 0.75085 TCTCCGATCGGACAAATCCC 59.249 55.0 32.59 0.0 42.83 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
213 318 0.690762 ACGTACAGCACATTTCCCCT 59.309 50.000 0.00 0.00 0.00 4.79
257 362 3.110178 GAACGGACGGCGTTCCAG 61.110 66.667 16.19 14.50 39.59 3.86
317 422 1.906333 GGGGCCCGAGCTTTTCAAA 60.906 57.895 17.79 0.00 39.73 2.69
363 479 3.074412 CGAGCATGTTAGGTGGAGTTTT 58.926 45.455 0.00 0.00 0.00 2.43
486 615 1.250840 ACGCAAAATTCTGCCCTCCC 61.251 55.000 0.00 0.00 39.26 4.30
496 625 0.918983 CTGCCCTCCCTATTCACCAA 59.081 55.000 0.00 0.00 0.00 3.67
504 642 4.017126 CTCCCTATTCACCAAAACTTCCC 58.983 47.826 0.00 0.00 0.00 3.97
507 645 4.838423 CCCTATTCACCAAAACTTCCCTTT 59.162 41.667 0.00 0.00 0.00 3.11
512 650 2.425668 CACCAAAACTTCCCTTTGTCGT 59.574 45.455 0.00 0.00 32.87 4.34
514 652 3.119280 ACCAAAACTTCCCTTTGTCGTTG 60.119 43.478 0.00 0.00 32.87 4.10
603 755 5.008415 CCTCGTTCGTTGTGTACCTATCTAT 59.992 44.000 0.00 0.00 0.00 1.98
604 756 6.052840 TCGTTCGTTGTGTACCTATCTATC 57.947 41.667 0.00 0.00 0.00 2.08
768 934 1.078143 CCGCCAAGAGGGAAAGAGG 60.078 63.158 0.00 0.00 40.01 3.69
769 935 1.679898 CGCCAAGAGGGAAAGAGGT 59.320 57.895 0.00 0.00 40.01 3.85
770 936 0.902531 CGCCAAGAGGGAAAGAGGTA 59.097 55.000 0.00 0.00 40.01 3.08
776 942 0.620700 GAGGGAAAGAGGTAGGCCCA 60.621 60.000 0.00 0.00 41.34 5.36
802 968 0.747255 CCCGGACATCACCAGTAGAG 59.253 60.000 0.73 0.00 0.00 2.43
803 969 1.685180 CCCGGACATCACCAGTAGAGA 60.685 57.143 0.73 0.00 0.00 3.10
804 970 1.678627 CCGGACATCACCAGTAGAGAG 59.321 57.143 0.00 0.00 0.00 3.20
805 971 2.644676 CGGACATCACCAGTAGAGAGA 58.355 52.381 0.00 0.00 0.00 3.10
840 1006 4.211986 GCAATAAAGCGGACGGGA 57.788 55.556 0.00 0.00 0.00 5.14
888 1054 2.257676 GACGACCCCACACGAGAC 59.742 66.667 0.00 0.00 0.00 3.36
889 1055 2.203451 ACGACCCCACACGAGACT 60.203 61.111 0.00 0.00 0.00 3.24
890 1056 0.957395 GACGACCCCACACGAGACTA 60.957 60.000 0.00 0.00 0.00 2.59
891 1057 1.239968 ACGACCCCACACGAGACTAC 61.240 60.000 0.00 0.00 0.00 2.73
892 1058 1.505353 GACCCCACACGAGACTACG 59.495 63.158 0.00 0.00 39.31 3.51
893 1059 0.957395 GACCCCACACGAGACTACGA 60.957 60.000 0.00 0.00 37.03 3.43
894 1060 0.959372 ACCCCACACGAGACTACGAG 60.959 60.000 0.00 0.00 37.03 4.18
895 1061 0.675837 CCCCACACGAGACTACGAGA 60.676 60.000 0.00 0.00 37.03 4.04
896 1062 0.727970 CCCACACGAGACTACGAGAG 59.272 60.000 0.00 0.00 37.03 3.20
897 1063 1.675116 CCCACACGAGACTACGAGAGA 60.675 57.143 0.00 0.00 37.03 3.10
898 1064 1.661617 CCACACGAGACTACGAGAGAG 59.338 57.143 0.00 0.00 37.03 3.20
899 1065 2.608268 CACACGAGACTACGAGAGAGA 58.392 52.381 0.00 0.00 37.03 3.10
904 1070 3.066342 ACGAGACTACGAGAGAGAGAGAG 59.934 52.174 0.00 0.00 37.03 3.20
905 1071 3.381949 GAGACTACGAGAGAGAGAGAGC 58.618 54.545 0.00 0.00 0.00 4.09
921 1087 2.949106 GCGCTCAGCTCAGCAAAA 59.051 55.556 11.18 0.00 44.04 2.44
922 1088 1.441682 GCGCTCAGCTCAGCAAAAC 60.442 57.895 11.18 0.00 44.04 2.43
923 1089 1.849976 GCGCTCAGCTCAGCAAAACT 61.850 55.000 11.18 0.00 44.04 2.66
924 1090 0.165511 CGCTCAGCTCAGCAAAACTC 59.834 55.000 11.18 0.00 39.62 3.01
925 1091 1.233019 GCTCAGCTCAGCAAAACTCA 58.767 50.000 4.03 0.00 39.43 3.41
926 1092 1.811359 GCTCAGCTCAGCAAAACTCAT 59.189 47.619 4.03 0.00 39.43 2.90
1047 1213 0.257616 AGAGAGAAGAGAGGGGACGG 59.742 60.000 0.00 0.00 0.00 4.79
1048 1214 0.256464 GAGAGAAGAGAGGGGACGGA 59.744 60.000 0.00 0.00 0.00 4.69
1096 1272 2.123683 CGAGGAGCAGGGGAGCTA 60.124 66.667 0.00 0.00 46.75 3.32
1097 1273 2.199652 CGAGGAGCAGGGGAGCTAG 61.200 68.421 0.00 0.00 46.75 3.42
1098 1274 1.075600 GAGGAGCAGGGGAGCTAGT 60.076 63.158 0.00 0.00 46.75 2.57
1099 1275 0.186386 GAGGAGCAGGGGAGCTAGTA 59.814 60.000 0.00 0.00 46.75 1.82
1100 1276 0.187361 AGGAGCAGGGGAGCTAGTAG 59.813 60.000 0.00 0.00 46.75 2.57
1101 1277 0.830023 GGAGCAGGGGAGCTAGTAGG 60.830 65.000 0.00 0.00 46.75 3.18
1102 1278 1.458588 AGCAGGGGAGCTAGTAGGC 60.459 63.158 0.00 0.00 44.50 3.93
1103 1279 1.458588 GCAGGGGAGCTAGTAGGCT 60.459 63.158 0.00 0.00 46.11 4.58
1115 1291 1.033574 AGTAGGCTAGCATGACGTCC 58.966 55.000 18.24 0.00 0.00 4.79
1386 1568 3.492829 GGTGAGTGAGACCTCGTTTCTTT 60.493 47.826 0.00 0.00 34.04 2.52
1620 1817 3.712907 GCCCGGTGCCTTCCTACA 61.713 66.667 0.00 0.00 0.00 2.74
1847 2044 2.975536 CACCCGTTCTTCGCCCTA 59.024 61.111 0.00 0.00 38.35 3.53
2184 2381 2.165301 GTCGGCTCGAAATGACGGG 61.165 63.158 0.00 0.00 37.72 5.28
2218 2415 3.484524 GCACTGGCACTCACAAATG 57.515 52.632 0.00 0.00 40.72 2.32
2219 2416 0.665369 GCACTGGCACTCACAAATGC 60.665 55.000 0.00 0.00 40.72 3.56
2275 2479 4.456535 TGGTTTCTTTCATGAACCTCGAA 58.543 39.130 7.89 6.16 0.00 3.71
2281 2485 4.222810 TCTTTCATGAACCTCGAATCCTCA 59.777 41.667 7.89 0.00 0.00 3.86
2367 2571 5.750352 TTCGTTCATTCTAGGTTTAGGGT 57.250 39.130 0.00 0.00 0.00 4.34
2382 2586 2.945080 AGGGTATGGATGCATCTGTG 57.055 50.000 25.28 0.00 0.00 3.66
2404 2608 3.181474 GGTTCGATTCCTAGGACAAGAGG 60.181 52.174 12.22 0.00 0.00 3.69
2420 2624 4.757149 ACAAGAGGAAAGGAATCAGAAACG 59.243 41.667 0.00 0.00 0.00 3.60
2485 2689 5.769367 TCATTCATGGATGTACGTAGCTAC 58.231 41.667 13.82 14.19 0.00 3.58
2502 2706 2.101750 GCTACTAGCTGGGTTCCTCTTC 59.898 54.545 0.85 0.00 38.45 2.87
2504 2714 2.183679 ACTAGCTGGGTTCCTCTTCTG 58.816 52.381 0.85 0.00 0.00 3.02
2508 2718 1.546548 GCTGGGTTCCTCTTCTGCTTT 60.547 52.381 0.00 0.00 0.00 3.51
2511 2721 2.958355 TGGGTTCCTCTTCTGCTTTTTG 59.042 45.455 0.00 0.00 0.00 2.44
2512 2722 2.959030 GGGTTCCTCTTCTGCTTTTTGT 59.041 45.455 0.00 0.00 0.00 2.83
2514 2724 4.363138 GGTTCCTCTTCTGCTTTTTGTTG 58.637 43.478 0.00 0.00 0.00 3.33
2556 2766 6.128035 GCATGTGTATGTCCTCAAAATGTGTA 60.128 38.462 0.00 0.00 36.65 2.90
2583 2793 1.633432 CATGTGGGGGAAAGTCCAGTA 59.367 52.381 0.00 0.00 38.64 2.74
2604 2814 5.785940 AGTAGAGTAAAAAGGTGGATGGAGT 59.214 40.000 0.00 0.00 0.00 3.85
2658 2868 1.225376 TTGACGCAGCAGGTAAACCG 61.225 55.000 0.00 0.00 42.08 4.44
2662 2872 1.356527 CGCAGCAGGTAAACCGGTAC 61.357 60.000 8.00 2.35 42.08 3.34
2663 2873 0.320946 GCAGCAGGTAAACCGGTACA 60.321 55.000 8.00 0.00 42.08 2.90
2664 2874 1.677820 GCAGCAGGTAAACCGGTACAT 60.678 52.381 8.00 0.00 42.08 2.29
2665 2875 2.706890 CAGCAGGTAAACCGGTACATT 58.293 47.619 8.00 0.09 42.08 2.71
2666 2876 2.418628 CAGCAGGTAAACCGGTACATTG 59.581 50.000 8.00 7.19 42.08 2.82
2668 2878 2.676342 GCAGGTAAACCGGTACATTGAG 59.324 50.000 8.00 0.00 42.08 3.02
2677 2893 2.032620 CGGTACATTGAGGGAGCTACT 58.967 52.381 0.00 0.00 0.00 2.57
2749 2965 0.107456 ACTAGCATGCAGATTCCCCG 59.893 55.000 21.98 0.00 0.00 5.73
2750 2966 1.227943 TAGCATGCAGATTCCCCGC 60.228 57.895 21.98 0.00 0.00 6.13
2892 3108 4.452455 GGAAAGAACGTGGCATATATCTGG 59.548 45.833 0.00 0.00 0.00 3.86
2915 3131 6.939730 TGGAGAAGAGTAGCTCTATATCTGTG 59.060 42.308 0.00 0.00 40.28 3.66
2945 3161 2.269023 TCAGAAATCTTCAGCCCTGGA 58.731 47.619 0.00 0.00 0.00 3.86
2946 3162 2.848694 TCAGAAATCTTCAGCCCTGGAT 59.151 45.455 0.00 0.00 0.00 3.41
3079 3295 2.029288 CGCACAGCCACAGAATCGT 61.029 57.895 0.00 0.00 0.00 3.73
3097 3313 2.430921 CACGCTCGTCCGCTTTCT 60.431 61.111 0.00 0.00 0.00 2.52
3105 3323 3.467226 TCCGCTTTCTAGGGCCGG 61.467 66.667 0.00 0.00 33.22 6.13
3192 3410 0.865769 GTTTCTTCGTGCGATGGTGT 59.134 50.000 7.46 0.00 0.00 4.16
3193 3411 0.865111 TTTCTTCGTGCGATGGTGTG 59.135 50.000 7.46 0.00 0.00 3.82
3194 3412 0.249699 TTCTTCGTGCGATGGTGTGT 60.250 50.000 7.46 0.00 0.00 3.72
3195 3413 0.943835 TCTTCGTGCGATGGTGTGTG 60.944 55.000 7.46 0.00 0.00 3.82
3196 3414 1.221466 CTTCGTGCGATGGTGTGTGT 61.221 55.000 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
213 318 4.013728 CAATCATTTTCTACCCCGGAACA 58.986 43.478 0.73 0.00 0.00 3.18
323 433 1.378514 GGCCGGCCATTCTGAAAGA 60.379 57.895 40.73 0.00 37.32 2.52
324 434 2.418083 GGGCCGGCCATTCTGAAAG 61.418 63.158 44.46 0.00 37.98 2.62
363 479 0.028770 CGCAAACTTCTCCGTGCAAA 59.971 50.000 0.00 0.00 36.80 3.68
409 527 1.228124 GGGCTGTGTGTGTGGCTTA 60.228 57.895 0.00 0.00 0.00 3.09
470 599 4.098501 GTGAATAGGGAGGGCAGAATTTTG 59.901 45.833 0.00 0.00 0.00 2.44
486 615 6.405278 ACAAAGGGAAGTTTTGGTGAATAG 57.595 37.500 3.19 0.00 39.30 1.73
496 625 2.686405 GTCCAACGACAAAGGGAAGTTT 59.314 45.455 0.00 0.00 38.99 2.66
512 650 0.947960 TTGTACGTACCGTCGTCCAA 59.052 50.000 22.43 5.16 43.12 3.53
514 652 0.794605 GCTTGTACGTACCGTCGTCC 60.795 60.000 22.43 1.24 43.12 4.79
603 755 4.695928 CGTGCTGGCAGTATAGTCTATAGA 59.304 45.833 17.16 0.00 0.00 1.98
604 756 4.695928 TCGTGCTGGCAGTATAGTCTATAG 59.304 45.833 17.16 0.00 0.00 1.31
840 1006 1.814586 CGAGGAGACTACGGCGACT 60.815 63.158 16.62 7.15 44.43 4.18
888 1054 0.859232 GCGCTCTCTCTCTCTCGTAG 59.141 60.000 0.00 0.00 0.00 3.51
889 1055 0.462375 AGCGCTCTCTCTCTCTCGTA 59.538 55.000 2.64 0.00 0.00 3.43
890 1056 0.810031 GAGCGCTCTCTCTCTCTCGT 60.810 60.000 29.88 0.00 36.42 4.18
891 1057 0.809636 TGAGCGCTCTCTCTCTCTCG 60.810 60.000 35.27 0.00 40.03 4.04
892 1058 0.940126 CTGAGCGCTCTCTCTCTCTC 59.060 60.000 35.27 8.98 40.03 3.20
893 1059 1.097547 GCTGAGCGCTCTCTCTCTCT 61.098 60.000 35.27 0.00 40.03 3.10
894 1060 1.356624 GCTGAGCGCTCTCTCTCTC 59.643 63.158 35.27 10.52 40.03 3.20
895 1061 3.513225 GCTGAGCGCTCTCTCTCT 58.487 61.111 35.27 0.00 40.03 3.10
904 1070 1.441682 GTTTTGCTGAGCTGAGCGC 60.442 57.895 20.51 0.00 42.32 5.92
905 1071 0.165511 GAGTTTTGCTGAGCTGAGCG 59.834 55.000 20.51 0.00 42.32 5.03
919 1085 0.944386 GCGTGGTGTGTGATGAGTTT 59.056 50.000 0.00 0.00 0.00 2.66
920 1086 0.884704 GGCGTGGTGTGTGATGAGTT 60.885 55.000 0.00 0.00 0.00 3.01
921 1087 1.301716 GGCGTGGTGTGTGATGAGT 60.302 57.895 0.00 0.00 0.00 3.41
922 1088 1.301637 TGGCGTGGTGTGTGATGAG 60.302 57.895 0.00 0.00 0.00 2.90
923 1089 1.596752 GTGGCGTGGTGTGTGATGA 60.597 57.895 0.00 0.00 0.00 2.92
924 1090 1.568612 GAGTGGCGTGGTGTGTGATG 61.569 60.000 0.00 0.00 0.00 3.07
925 1091 1.301716 GAGTGGCGTGGTGTGTGAT 60.302 57.895 0.00 0.00 0.00 3.06
926 1092 2.108157 GAGTGGCGTGGTGTGTGA 59.892 61.111 0.00 0.00 0.00 3.58
966 1132 0.757935 TACAGTATGGGACGGGAGGC 60.758 60.000 0.00 0.00 43.62 4.70
1047 1213 2.024918 CTCCGCTGCTCTCTCTCTC 58.975 63.158 0.00 0.00 0.00 3.20
1048 1214 2.120909 GCTCCGCTGCTCTCTCTCT 61.121 63.158 0.00 0.00 0.00 3.10
1096 1272 1.033574 GGACGTCATGCTAGCCTACT 58.966 55.000 18.91 0.00 0.00 2.57
1097 1273 0.317938 CGGACGTCATGCTAGCCTAC 60.318 60.000 18.91 6.69 0.00 3.18
1098 1274 1.452953 CCGGACGTCATGCTAGCCTA 61.453 60.000 18.91 0.00 0.00 3.93
1099 1275 2.786495 CCGGACGTCATGCTAGCCT 61.786 63.158 18.91 0.00 0.00 4.58
1100 1276 2.279517 CCGGACGTCATGCTAGCC 60.280 66.667 18.91 0.00 0.00 3.93
1101 1277 2.279517 CCCGGACGTCATGCTAGC 60.280 66.667 18.91 8.10 0.00 3.42
1102 1278 2.417516 CCCCGGACGTCATGCTAG 59.582 66.667 18.91 0.91 0.00 3.42
1103 1279 3.845259 GCCCCGGACGTCATGCTA 61.845 66.667 18.91 0.00 0.00 3.49
1175 1351 1.219393 GTTCTCCCGCTCCTTCCAG 59.781 63.158 0.00 0.00 0.00 3.86
2037 2234 2.278404 CCCCGCCATTCCATCCAA 59.722 61.111 0.00 0.00 0.00 3.53
2184 2381 4.619140 GCAATGCTCCGCGGATGC 62.619 66.667 29.44 29.44 37.91 3.91
2275 2479 3.863142 GCTTGTGCTTTTGATGAGGAT 57.137 42.857 0.00 0.00 36.03 3.24
2329 2533 1.647545 CGAATTGCCCACATCGCAGT 61.648 55.000 0.00 0.00 37.57 4.40
2367 2571 2.433970 TCGAACCACAGATGCATCCATA 59.566 45.455 23.06 0.00 0.00 2.74
2382 2586 3.181474 CCTCTTGTCCTAGGAATCGAACC 60.181 52.174 14.65 0.00 34.58 3.62
2404 2608 5.120208 TGAACGATCGTTTCTGATTCCTTTC 59.880 40.000 32.13 16.29 38.60 2.62
2485 2689 1.134551 GCAGAAGAGGAACCCAGCTAG 60.135 57.143 0.00 0.00 0.00 3.42
2502 2706 5.844301 AGAACACAAACAACAAAAAGCAG 57.156 34.783 0.00 0.00 0.00 4.24
2504 2714 4.845598 GCAAGAACACAAACAACAAAAAGC 59.154 37.500 0.00 0.00 0.00 3.51
2508 2718 3.995199 TGGCAAGAACACAAACAACAAA 58.005 36.364 0.00 0.00 0.00 2.83
2511 2721 2.284952 GCATGGCAAGAACACAAACAAC 59.715 45.455 0.00 0.00 0.00 3.32
2512 2722 2.093816 TGCATGGCAAGAACACAAACAA 60.094 40.909 0.00 0.00 34.76 2.83
2514 2724 2.222007 TGCATGGCAAGAACACAAAC 57.778 45.000 0.00 0.00 34.76 2.93
2556 2766 1.002069 TTTCCCCCACATGAGCTCAT 58.998 50.000 23.75 23.75 36.96 2.90
2583 2793 5.073144 TCAACTCCATCCACCTTTTTACTCT 59.927 40.000 0.00 0.00 0.00 3.24
2604 2814 1.003118 AGGTCACGGCATAAAGCTCAA 59.997 47.619 0.00 0.00 44.79 3.02
2658 2868 3.006003 GCTAGTAGCTCCCTCAATGTACC 59.994 52.174 15.16 0.00 38.45 3.34
2662 2872 3.133721 ACTTGCTAGTAGCTCCCTCAATG 59.866 47.826 22.34 5.85 42.97 2.82
2663 2873 3.379452 ACTTGCTAGTAGCTCCCTCAAT 58.621 45.455 22.34 0.00 42.97 2.57
2664 2874 2.821437 ACTTGCTAGTAGCTCCCTCAA 58.179 47.619 22.34 6.91 42.97 3.02
2665 2875 2.534042 ACTTGCTAGTAGCTCCCTCA 57.466 50.000 22.34 0.00 42.97 3.86
2666 2876 2.761208 TGAACTTGCTAGTAGCTCCCTC 59.239 50.000 22.34 13.82 42.97 4.30
2668 2878 3.386402 AGATGAACTTGCTAGTAGCTCCC 59.614 47.826 22.34 8.29 42.97 4.30
2677 2893 7.498900 TCAAAAGTGAAAGAGATGAACTTGCTA 59.501 33.333 0.00 0.00 31.69 3.49
2806 3022 0.750850 TCTCCGATCGGACAAATCCC 59.249 55.000 32.59 0.00 42.83 3.85
2892 3108 7.979444 ACACAGATATAGAGCTACTCTTCTC 57.021 40.000 1.88 0.00 41.50 2.87
3005 3221 0.870307 CCGTACCGCATACAGAGTGC 60.870 60.000 0.00 0.00 39.18 4.40
3068 3284 1.406219 CGAGCGTGACGATTCTGTGG 61.406 60.000 10.10 0.00 0.00 4.17
3079 3295 1.579964 TAGAAAGCGGACGAGCGTGA 61.580 55.000 0.00 0.00 43.00 4.35
3111 3329 2.747855 CGGGCTTCAGTTCCTGGC 60.748 66.667 0.00 0.00 31.51 4.85
3116 3334 0.806492 GATCCGACGGGCTTCAGTTC 60.806 60.000 15.25 0.00 0.00 3.01
3165 3383 1.719780 CGCACGAAGAAACTGTAGGAC 59.280 52.381 0.00 0.00 0.00 3.85
3192 3410 2.959599 GTCACGCACGAGCACACA 60.960 61.111 5.50 0.00 42.27 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.