Multiple sequence alignment - TraesCS2B01G219200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G219200 chr2B 100.000 3919 0 0 741 4659 209250023 209253941 0.000000e+00 7238.0
1 TraesCS2B01G219200 chr2B 100.000 386 0 0 1 386 209249283 209249668 0.000000e+00 713.0
2 TraesCS2B01G219200 chr2B 90.234 256 21 3 1 254 244170740 244170993 9.660000e-87 331.0
3 TraesCS2B01G219200 chr2B 91.304 46 3 1 4599 4644 482732313 482732357 1.400000e-05 62.1
4 TraesCS2B01G219200 chr2D 95.484 2037 60 15 2529 4556 150627809 150629822 0.000000e+00 3223.0
5 TraesCS2B01G219200 chr2D 95.255 1665 43 10 743 2381 150625780 150627434 0.000000e+00 2604.0
6 TraesCS2B01G219200 chr2D 92.899 169 7 3 2373 2540 150627600 150627764 1.680000e-59 241.0
7 TraesCS2B01G219200 chr2D 96.800 125 3 1 262 386 150625486 150625609 1.700000e-49 207.0
8 TraesCS2B01G219200 chr2D 94.444 36 2 0 4605 4640 579393078 579393113 6.510000e-04 56.5
9 TraesCS2B01G219200 chr2A 95.203 2022 79 9 2542 4555 150916056 150914045 0.000000e+00 3181.0
10 TraesCS2B01G219200 chr2A 94.356 1825 55 25 741 2540 150917899 150916098 0.000000e+00 2756.0
11 TraesCS2B01G219200 chr2A 92.913 127 3 3 265 386 150918205 150918080 3.700000e-41 180.0
12 TraesCS2B01G219200 chr7B 91.506 259 22 0 1 259 646374141 646374399 1.590000e-94 357.0
13 TraesCS2B01G219200 chr7B 87.739 261 32 0 1 261 620603325 620603585 5.860000e-79 305.0
14 TraesCS2B01G219200 chr7B 90.698 43 4 0 4599 4641 533304598 533304556 1.810000e-04 58.4
15 TraesCS2B01G219200 chr5B 88.803 259 29 0 1 259 548558850 548558592 7.520000e-83 318.0
16 TraesCS2B01G219200 chr5B 88.095 252 30 0 1 252 503311411 503311662 2.720000e-77 300.0
17 TraesCS2B01G219200 chr5B 100.000 45 0 0 4558 4602 242206650 242206694 2.990000e-12 84.2
18 TraesCS2B01G219200 chr5B 95.918 49 2 0 4559 4607 617713866 617713818 3.860000e-11 80.5
19 TraesCS2B01G219200 chr5B 94.118 51 2 1 4557 4607 662858503 662858552 5.000000e-10 76.8
20 TraesCS2B01G219200 chr3B 89.837 246 25 0 1 246 777199284 777199529 2.710000e-82 316.0
21 TraesCS2B01G219200 chr4D 87.308 260 30 3 1 259 13213973 13214230 1.270000e-75 294.0
22 TraesCS2B01G219200 chr3D 87.747 253 28 3 1 252 50418129 50418379 4.560000e-75 292.0
23 TraesCS2B01G219200 chr3D 89.831 59 5 1 4545 4602 537032800 537032858 1.800000e-09 75.0
24 TraesCS2B01G219200 chr3D 90.698 43 3 1 4600 4641 389909189 389909231 6.510000e-04 56.5
25 TraesCS2B01G219200 chr6B 85.496 262 34 4 1 260 221748819 221748560 2.140000e-68 270.0
26 TraesCS2B01G219200 chr6B 88.525 61 6 1 4543 4602 42749432 42749492 6.470000e-09 73.1
27 TraesCS2B01G219200 chr1D 88.732 71 2 4 4550 4614 470928462 470928392 1.070000e-11 82.4
28 TraesCS2B01G219200 chr7D 87.324 71 8 1 4549 4619 18067871 18067802 3.860000e-11 80.5
29 TraesCS2B01G219200 chr5D 100.000 43 0 0 4560 4602 532743610 532743652 3.860000e-11 80.5
30 TraesCS2B01G219200 chr6D 90.323 62 3 2 4544 4602 78086362 78086301 1.390000e-10 78.7
31 TraesCS2B01G219200 chr6D 100.000 31 0 0 4612 4642 119139173 119139203 1.810000e-04 58.4
32 TraesCS2B01G219200 chr4B 93.182 44 2 1 4599 4641 527285873 527285830 3.890000e-06 63.9
33 TraesCS2B01G219200 chr6A 100.000 32 0 0 4610 4641 256473686 256473655 5.030000e-05 60.2
34 TraesCS2B01G219200 chr6A 97.059 34 1 0 4609 4642 147303812 147303845 1.810000e-04 58.4
35 TraesCS2B01G219200 chr3A 90.698 43 3 1 4600 4641 510594299 510594341 6.510000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G219200 chr2B 209249283 209253941 4658 False 3975.50 7238 100.000000 1 4659 2 chr2B.!!$F3 4658
1 TraesCS2B01G219200 chr2D 150625486 150629822 4336 False 1568.75 3223 95.109500 262 4556 4 chr2D.!!$F2 4294
2 TraesCS2B01G219200 chr2A 150914045 150918205 4160 True 2039.00 3181 94.157333 265 4555 3 chr2A.!!$R1 4290

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.035820 TTAACAAGCTACCGCCAGGG 60.036 55.000 0.00 0.00 43.47 4.45 F
77 78 0.038159 GCTACTTGTCCACGTCAGCT 60.038 55.000 0.00 0.00 0.00 4.24 F
79 80 0.240145 TACTTGTCCACGTCAGCTCG 59.760 55.000 0.00 0.00 0.00 5.03 F
118 119 0.249238 CCTCTGTCGCATCCTACTGC 60.249 60.000 0.00 0.00 38.81 4.40 F
179 180 0.394565 CCCCTGGAGATAGCGAAAGG 59.605 60.000 0.00 0.00 0.00 3.11 F
180 181 0.394565 CCCTGGAGATAGCGAAAGGG 59.605 60.000 0.00 1.29 38.56 3.95 F
191 192 0.456221 GCGAAAGGGTCAGATCTCGA 59.544 55.000 0.00 0.00 0.00 4.04 F
1589 1626 0.523072 CGGTGGTTTGCTTGATGGAG 59.477 55.000 0.00 0.00 0.00 3.86 F
1715 1752 1.290009 GGGCTTCATTTGCGCTTGT 59.710 52.632 9.73 0.00 39.74 3.16 F
3535 3804 0.979665 CTGAGAAGAAGGCCACCTCA 59.020 55.000 5.01 8.81 30.89 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1589 1626 0.875059 GCTTGCTGTTGAGTACCCAC 59.125 55.000 0.00 0.0 0.00 4.61 R
1709 1746 1.009675 GAACACAGCCACACAAGCG 60.010 57.895 0.00 0.0 34.64 4.68 R
1978 2015 2.580589 CAAAACACCTTGGCGTTATCG 58.419 47.619 0.00 0.0 40.37 2.92 R
2084 2121 6.588756 CACCAGAAAGTGAAATCATTGAATGG 59.411 38.462 5.20 0.0 40.34 3.16 R
2273 2310 2.114616 TGTTGGTTTTGGTTCCATGCT 58.885 42.857 0.00 0.0 33.50 3.79 R
2381 2419 6.881065 CAGAGGATTCAAGAACTGTAAATCCA 59.119 38.462 13.29 0.0 45.08 3.41 R
2393 2604 9.152327 AGAATACACATATCAGAGGATTCAAGA 57.848 33.333 0.00 0.0 34.89 3.02 R
2465 2676 0.386731 CAAGCCCAAAAGTAACCGCG 60.387 55.000 0.00 0.0 0.00 6.46 R
3634 3903 0.617535 TCTTCATCGGGCCTTCCTCA 60.618 55.000 0.84 0.0 0.00 3.86 R
4555 4847 1.000394 CACATGTGTCACGTGGTAGGA 60.000 52.381 25.31 0.0 39.36 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.697747 CCACGGGTTCTGGCGGTA 61.698 66.667 0.00 0.00 0.00 4.02
21 22 2.344500 CACGGGTTCTGGCGGTAA 59.656 61.111 0.00 0.00 0.00 2.85
22 23 1.740296 CACGGGTTCTGGCGGTAAG 60.740 63.158 0.00 0.00 0.00 2.34
23 24 2.125269 CGGGTTCTGGCGGTAAGG 60.125 66.667 0.00 0.00 0.00 2.69
24 25 2.951101 CGGGTTCTGGCGGTAAGGT 61.951 63.158 0.00 0.00 0.00 3.50
25 26 1.377612 GGGTTCTGGCGGTAAGGTT 59.622 57.895 0.00 0.00 0.00 3.50
26 27 0.251033 GGGTTCTGGCGGTAAGGTTT 60.251 55.000 0.00 0.00 0.00 3.27
27 28 1.003464 GGGTTCTGGCGGTAAGGTTTA 59.997 52.381 0.00 0.00 0.00 2.01
28 29 2.552809 GGGTTCTGGCGGTAAGGTTTAA 60.553 50.000 0.00 0.00 0.00 1.52
29 30 2.485426 GGTTCTGGCGGTAAGGTTTAAC 59.515 50.000 0.00 0.00 0.00 2.01
30 31 3.140623 GTTCTGGCGGTAAGGTTTAACA 58.859 45.455 0.00 0.00 0.00 2.41
31 32 3.488778 TCTGGCGGTAAGGTTTAACAA 57.511 42.857 0.00 0.00 0.00 2.83
32 33 3.404899 TCTGGCGGTAAGGTTTAACAAG 58.595 45.455 0.00 0.00 0.00 3.16
33 34 1.881324 TGGCGGTAAGGTTTAACAAGC 59.119 47.619 0.00 0.00 0.00 4.01
34 35 2.156917 GGCGGTAAGGTTTAACAAGCT 58.843 47.619 0.00 0.00 42.81 3.74
35 36 3.244491 TGGCGGTAAGGTTTAACAAGCTA 60.244 43.478 0.00 0.00 39.96 3.32
36 37 3.125829 GGCGGTAAGGTTTAACAAGCTAC 59.874 47.826 0.00 0.00 39.96 3.58
37 38 3.125829 GCGGTAAGGTTTAACAAGCTACC 59.874 47.826 0.00 0.00 39.96 3.18
38 39 3.368843 CGGTAAGGTTTAACAAGCTACCG 59.631 47.826 16.14 16.14 43.29 4.02
39 40 3.125829 GGTAAGGTTTAACAAGCTACCGC 59.874 47.826 0.00 0.00 39.96 5.68
40 41 1.817357 AGGTTTAACAAGCTACCGCC 58.183 50.000 0.00 0.00 39.04 6.13
41 42 1.072648 AGGTTTAACAAGCTACCGCCA 59.927 47.619 0.00 0.00 39.04 5.69
42 43 1.467342 GGTTTAACAAGCTACCGCCAG 59.533 52.381 0.00 0.00 36.60 4.85
43 44 1.467342 GTTTAACAAGCTACCGCCAGG 59.533 52.381 0.00 0.00 45.13 4.45
44 45 0.035820 TTAACAAGCTACCGCCAGGG 60.036 55.000 0.00 0.00 43.47 4.45
58 59 2.363361 AGGGTCCCTGACGGTAGG 59.637 66.667 10.61 0.54 37.59 3.18
59 60 3.468140 GGGTCCCTGACGGTAGGC 61.468 72.222 0.00 0.00 36.47 3.93
60 61 2.363925 GGTCCCTGACGGTAGGCT 60.364 66.667 0.00 0.00 36.47 4.58
61 62 1.076485 GGTCCCTGACGGTAGGCTA 60.076 63.158 1.94 0.00 36.47 3.93
62 63 1.390383 GGTCCCTGACGGTAGGCTAC 61.390 65.000 16.40 16.40 36.47 3.58
63 64 0.395448 GTCCCTGACGGTAGGCTACT 60.395 60.000 23.01 5.35 36.47 2.57
64 65 0.333993 TCCCTGACGGTAGGCTACTT 59.666 55.000 23.01 11.34 36.47 2.24
65 66 0.460311 CCCTGACGGTAGGCTACTTG 59.540 60.000 23.01 17.72 36.47 3.16
66 67 1.183549 CCTGACGGTAGGCTACTTGT 58.816 55.000 23.01 20.49 0.00 3.16
67 68 1.134560 CCTGACGGTAGGCTACTTGTC 59.865 57.143 28.13 28.13 35.82 3.18
68 69 1.134560 CTGACGGTAGGCTACTTGTCC 59.865 57.143 29.89 19.89 35.02 4.02
69 70 1.180029 GACGGTAGGCTACTTGTCCA 58.820 55.000 26.24 0.00 32.07 4.02
70 71 0.893447 ACGGTAGGCTACTTGTCCAC 59.107 55.000 23.01 4.86 0.00 4.02
71 72 0.179145 CGGTAGGCTACTTGTCCACG 60.179 60.000 23.01 12.75 0.00 4.94
72 73 0.893447 GGTAGGCTACTTGTCCACGT 59.107 55.000 23.01 0.00 0.00 4.49
73 74 1.135170 GGTAGGCTACTTGTCCACGTC 60.135 57.143 23.01 0.00 0.00 4.34
74 75 1.542915 GTAGGCTACTTGTCCACGTCA 59.457 52.381 17.35 0.00 0.00 4.35
75 76 0.603569 AGGCTACTTGTCCACGTCAG 59.396 55.000 0.00 0.00 0.00 3.51
76 77 1.014564 GGCTACTTGTCCACGTCAGC 61.015 60.000 0.00 0.00 0.00 4.26
77 78 0.038159 GCTACTTGTCCACGTCAGCT 60.038 55.000 0.00 0.00 0.00 4.24
78 79 1.983972 CTACTTGTCCACGTCAGCTC 58.016 55.000 0.00 0.00 0.00 4.09
79 80 0.240145 TACTTGTCCACGTCAGCTCG 59.760 55.000 0.00 0.00 0.00 5.03
80 81 1.734477 CTTGTCCACGTCAGCTCGG 60.734 63.158 0.00 0.00 34.94 4.63
81 82 3.220999 TTGTCCACGTCAGCTCGGG 62.221 63.158 0.00 0.00 34.94 5.14
84 85 4.680237 CCACGTCAGCTCGGGCAA 62.680 66.667 11.40 0.00 41.70 4.52
85 86 2.664851 CACGTCAGCTCGGGCAAA 60.665 61.111 11.40 0.00 41.70 3.68
86 87 2.665185 ACGTCAGCTCGGGCAAAC 60.665 61.111 11.40 5.94 41.70 2.93
87 88 3.777925 CGTCAGCTCGGGCAAACG 61.778 66.667 18.02 18.02 40.28 3.60
88 89 3.423154 GTCAGCTCGGGCAAACGG 61.423 66.667 11.40 0.00 41.70 4.44
110 111 4.498520 CGTCGCCCTCTGTCGCAT 62.499 66.667 0.00 0.00 0.00 4.73
111 112 2.583593 GTCGCCCTCTGTCGCATC 60.584 66.667 0.00 0.00 0.00 3.91
112 113 3.838271 TCGCCCTCTGTCGCATCC 61.838 66.667 0.00 0.00 0.00 3.51
113 114 3.842923 CGCCCTCTGTCGCATCCT 61.843 66.667 0.00 0.00 0.00 3.24
114 115 2.490148 CGCCCTCTGTCGCATCCTA 61.490 63.158 0.00 0.00 0.00 2.94
115 116 1.068250 GCCCTCTGTCGCATCCTAC 59.932 63.158 0.00 0.00 0.00 3.18
116 117 1.395826 GCCCTCTGTCGCATCCTACT 61.396 60.000 0.00 0.00 0.00 2.57
117 118 0.387202 CCCTCTGTCGCATCCTACTG 59.613 60.000 0.00 0.00 0.00 2.74
118 119 0.249238 CCTCTGTCGCATCCTACTGC 60.249 60.000 0.00 0.00 38.81 4.40
119 120 0.249238 CTCTGTCGCATCCTACTGCC 60.249 60.000 0.00 0.00 39.00 4.85
120 121 0.970427 TCTGTCGCATCCTACTGCCA 60.970 55.000 0.00 0.00 39.00 4.92
121 122 0.529337 CTGTCGCATCCTACTGCCAG 60.529 60.000 0.00 0.00 39.00 4.85
122 123 1.227380 GTCGCATCCTACTGCCAGG 60.227 63.158 0.00 0.00 39.00 4.45
123 124 2.109799 CGCATCCTACTGCCAGGG 59.890 66.667 0.00 0.00 39.00 4.45
124 125 2.735772 CGCATCCTACTGCCAGGGT 61.736 63.158 0.00 0.00 39.00 4.34
125 126 1.147153 GCATCCTACTGCCAGGGTC 59.853 63.158 0.00 0.00 36.26 4.46
126 127 1.832912 CATCCTACTGCCAGGGTCC 59.167 63.158 0.00 0.00 36.26 4.46
127 128 1.384643 ATCCTACTGCCAGGGTCCC 60.385 63.158 0.00 0.00 36.26 4.46
128 129 1.902818 ATCCTACTGCCAGGGTCCCT 61.903 60.000 3.85 3.85 36.26 4.20
148 149 2.987752 GCGGTAGCATGTCTAACCC 58.012 57.895 6.62 1.98 44.35 4.11
149 150 0.464452 GCGGTAGCATGTCTAACCCT 59.536 55.000 6.62 0.00 44.35 4.34
150 151 1.684983 GCGGTAGCATGTCTAACCCTA 59.315 52.381 6.62 0.00 44.35 3.53
151 152 2.545322 GCGGTAGCATGTCTAACCCTAC 60.545 54.545 6.62 2.40 44.35 3.18
152 153 2.957006 CGGTAGCATGTCTAACCCTACT 59.043 50.000 6.62 0.00 31.10 2.57
153 154 3.243434 CGGTAGCATGTCTAACCCTACTG 60.243 52.174 6.62 3.66 31.10 2.74
154 155 2.990066 AGCATGTCTAACCCTACTGC 57.010 50.000 0.00 0.00 0.00 4.40
155 156 1.486726 AGCATGTCTAACCCTACTGCC 59.513 52.381 0.00 0.00 0.00 4.85
156 157 1.209504 GCATGTCTAACCCTACTGCCA 59.790 52.381 0.00 0.00 0.00 4.92
157 158 2.743183 GCATGTCTAACCCTACTGCCAG 60.743 54.545 0.00 0.00 0.00 4.85
158 159 1.568504 TGTCTAACCCTACTGCCAGG 58.431 55.000 0.00 0.00 35.26 4.45
159 160 1.078159 TGTCTAACCCTACTGCCAGGA 59.922 52.381 0.00 0.00 38.00 3.86
160 161 1.481363 GTCTAACCCTACTGCCAGGAC 59.519 57.143 0.00 0.00 38.00 3.85
161 162 0.831307 CTAACCCTACTGCCAGGACC 59.169 60.000 0.00 0.00 38.00 4.46
162 163 0.619543 TAACCCTACTGCCAGGACCC 60.620 60.000 0.00 0.00 38.00 4.46
163 164 3.090532 CCCTACTGCCAGGACCCC 61.091 72.222 0.00 0.00 38.00 4.95
164 165 2.041265 CCTACTGCCAGGACCCCT 59.959 66.667 0.00 0.00 38.00 4.79
174 175 1.152440 AGGACCCCTGGAGATAGCG 60.152 63.158 0.00 0.00 29.57 4.26
175 176 1.152525 GGACCCCTGGAGATAGCGA 60.153 63.158 0.00 0.00 0.00 4.93
176 177 0.759436 GGACCCCTGGAGATAGCGAA 60.759 60.000 0.00 0.00 0.00 4.70
177 178 1.120530 GACCCCTGGAGATAGCGAAA 58.879 55.000 0.00 0.00 0.00 3.46
178 179 1.069358 GACCCCTGGAGATAGCGAAAG 59.931 57.143 0.00 0.00 0.00 2.62
179 180 0.394565 CCCCTGGAGATAGCGAAAGG 59.605 60.000 0.00 0.00 0.00 3.11
180 181 0.394565 CCCTGGAGATAGCGAAAGGG 59.605 60.000 0.00 1.29 38.56 3.95
181 182 1.123928 CCTGGAGATAGCGAAAGGGT 58.876 55.000 0.00 0.00 0.00 4.34
182 183 1.069358 CCTGGAGATAGCGAAAGGGTC 59.931 57.143 0.00 0.00 0.00 4.46
183 184 1.757118 CTGGAGATAGCGAAAGGGTCA 59.243 52.381 0.00 0.00 0.00 4.02
184 185 1.757118 TGGAGATAGCGAAAGGGTCAG 59.243 52.381 0.00 0.00 0.00 3.51
185 186 2.032620 GGAGATAGCGAAAGGGTCAGA 58.967 52.381 0.00 0.00 0.00 3.27
186 187 2.630580 GGAGATAGCGAAAGGGTCAGAT 59.369 50.000 0.00 0.00 0.00 2.90
187 188 3.305744 GGAGATAGCGAAAGGGTCAGATC 60.306 52.174 0.00 0.00 0.00 2.75
188 189 3.571590 AGATAGCGAAAGGGTCAGATCT 58.428 45.455 0.00 0.00 0.00 2.75
189 190 3.572255 AGATAGCGAAAGGGTCAGATCTC 59.428 47.826 0.00 0.00 0.00 2.75
190 191 0.457851 AGCGAAAGGGTCAGATCTCG 59.542 55.000 0.00 0.00 0.00 4.04
191 192 0.456221 GCGAAAGGGTCAGATCTCGA 59.544 55.000 0.00 0.00 0.00 4.04
192 193 1.135083 GCGAAAGGGTCAGATCTCGAA 60.135 52.381 0.00 0.00 0.00 3.71
193 194 2.674177 GCGAAAGGGTCAGATCTCGAAA 60.674 50.000 0.00 0.00 0.00 3.46
194 195 3.585862 CGAAAGGGTCAGATCTCGAAAA 58.414 45.455 0.00 0.00 0.00 2.29
195 196 4.184629 CGAAAGGGTCAGATCTCGAAAAT 58.815 43.478 0.00 0.00 0.00 1.82
196 197 4.631813 CGAAAGGGTCAGATCTCGAAAATT 59.368 41.667 0.00 0.00 0.00 1.82
197 198 5.122396 CGAAAGGGTCAGATCTCGAAAATTT 59.878 40.000 0.00 0.00 0.00 1.82
198 199 6.348540 CGAAAGGGTCAGATCTCGAAAATTTT 60.349 38.462 2.28 2.28 0.00 1.82
199 200 6.502136 AAGGGTCAGATCTCGAAAATTTTC 57.498 37.500 19.08 19.08 0.00 2.29
212 213 4.851010 GAAAATTTTCGAAACCGAGGTCA 58.149 39.130 14.83 0.00 37.37 4.02
213 214 4.483476 AAATTTTCGAAACCGAGGTCAG 57.517 40.909 10.79 0.00 37.37 3.51
214 215 2.894763 TTTTCGAAACCGAGGTCAGA 57.105 45.000 10.79 0.00 37.37 3.27
215 216 3.396260 TTTTCGAAACCGAGGTCAGAT 57.604 42.857 10.79 0.00 37.37 2.90
216 217 2.649331 TTCGAAACCGAGGTCAGATC 57.351 50.000 0.00 0.00 37.37 2.75
217 218 0.815734 TCGAAACCGAGGTCAGATCC 59.184 55.000 0.00 0.00 0.00 3.36
218 219 0.818296 CGAAACCGAGGTCAGATCCT 59.182 55.000 0.00 0.00 40.97 3.24
219 220 1.469940 CGAAACCGAGGTCAGATCCTG 60.470 57.143 0.00 0.00 38.02 3.86
220 221 1.825474 GAAACCGAGGTCAGATCCTGA 59.175 52.381 0.00 0.00 38.25 3.86
221 222 1.938585 AACCGAGGTCAGATCCTGAA 58.061 50.000 0.00 0.00 42.46 3.02
222 223 2.166907 ACCGAGGTCAGATCCTGAAT 57.833 50.000 0.00 0.00 42.46 2.57
223 224 2.472029 ACCGAGGTCAGATCCTGAATT 58.528 47.619 0.00 0.00 42.46 2.17
224 225 2.840651 ACCGAGGTCAGATCCTGAATTT 59.159 45.455 0.00 0.00 42.46 1.82
225 226 4.030913 ACCGAGGTCAGATCCTGAATTTA 58.969 43.478 0.00 0.00 42.46 1.40
226 227 4.656112 ACCGAGGTCAGATCCTGAATTTAT 59.344 41.667 0.00 0.00 42.46 1.40
227 228 5.839063 ACCGAGGTCAGATCCTGAATTTATA 59.161 40.000 0.00 0.00 42.46 0.98
228 229 6.498651 ACCGAGGTCAGATCCTGAATTTATAT 59.501 38.462 0.00 0.00 42.46 0.86
229 230 7.038659 CCGAGGTCAGATCCTGAATTTATATC 58.961 42.308 0.00 0.00 42.46 1.63
230 231 6.749578 CGAGGTCAGATCCTGAATTTATATCG 59.250 42.308 0.00 0.00 42.46 2.92
231 232 7.362142 CGAGGTCAGATCCTGAATTTATATCGA 60.362 40.741 0.00 0.00 42.46 3.59
232 233 8.195165 AGGTCAGATCCTGAATTTATATCGAA 57.805 34.615 0.00 0.00 42.46 3.71
233 234 8.651389 AGGTCAGATCCTGAATTTATATCGAAA 58.349 33.333 0.00 0.00 42.46 3.46
234 235 9.273016 GGTCAGATCCTGAATTTATATCGAAAA 57.727 33.333 0.00 0.00 42.46 2.29
258 259 7.637709 AAAGATCAAAACACGAAATTTAGCC 57.362 32.000 0.00 0.00 0.00 3.93
259 260 5.390613 AGATCAAAACACGAAATTTAGCCG 58.609 37.500 0.00 0.00 0.00 5.52
260 261 3.301706 TCAAAACACGAAATTTAGCCGC 58.698 40.909 0.00 0.00 0.00 6.53
261 262 3.003897 TCAAAACACGAAATTTAGCCGCT 59.996 39.130 0.00 0.00 0.00 5.52
262 263 2.894307 AACACGAAATTTAGCCGCTC 57.106 45.000 0.00 0.00 0.00 5.03
263 264 1.084289 ACACGAAATTTAGCCGCTCC 58.916 50.000 0.00 0.00 0.00 4.70
333 339 4.821589 GAACGGGGCAGCGAGGAG 62.822 72.222 0.00 0.00 0.00 3.69
945 968 4.180946 CCGAGCCGAGACCAGACG 62.181 72.222 0.00 0.00 0.00 4.18
947 970 2.687805 CGAGCCGAGACCAGACGAA 61.688 63.158 0.00 0.00 0.00 3.85
948 971 1.153997 GAGCCGAGACCAGACGAAC 60.154 63.158 0.00 0.00 0.00 3.95
951 974 2.623915 CCGAGACCAGACGAACCGT 61.624 63.158 0.00 0.00 45.10 4.83
952 975 1.442184 CGAGACCAGACGAACCGTG 60.442 63.158 0.00 0.00 41.37 4.94
1214 1250 3.315769 CTGACGACTGACGCGCTCT 62.316 63.158 5.73 0.00 46.94 4.09
1240 1277 1.886886 TGTTTGTTTACCCTCGCCTC 58.113 50.000 0.00 0.00 0.00 4.70
1446 1483 6.094061 GTCGGCTTCTATCAGGTATAACATC 58.906 44.000 0.00 0.00 0.00 3.06
1589 1626 0.523072 CGGTGGTTTGCTTGATGGAG 59.477 55.000 0.00 0.00 0.00 3.86
1709 1746 3.119029 TCAATGCTAAGGGCTTCATTTGC 60.119 43.478 0.00 0.00 42.39 3.68
1715 1752 1.290009 GGGCTTCATTTGCGCTTGT 59.710 52.632 9.73 0.00 39.74 3.16
1739 1776 3.319904 GTGTTCTGCACGTCGCTT 58.680 55.556 10.54 0.00 43.06 4.68
1758 1795 5.177511 TCGCTTCAACAGATTGTGAGTTTAG 59.822 40.000 0.00 0.00 37.11 1.85
1770 1807 8.861086 AGATTGTGAGTTTAGTTTCTCTGTCTA 58.139 33.333 0.00 0.00 0.00 2.59
1913 1950 3.395639 TGGAAGTTGTACGACCAATGAC 58.604 45.455 9.76 0.00 0.00 3.06
1925 1962 1.735571 ACCAATGACGATAACGCCAAC 59.264 47.619 0.00 0.00 43.96 3.77
1978 2015 4.846779 TGAAAGTTGTCTGGCCAATTAC 57.153 40.909 7.01 6.22 0.00 1.89
2020 2057 4.098807 TGCTGATAACGAGCAACATAGGTA 59.901 41.667 0.00 0.00 43.47 3.08
2084 2121 3.214328 CTGGGTATTGTATGGTTCTGCC 58.786 50.000 0.00 0.00 37.90 4.85
2135 2172 7.800380 GCAGTACTGTTGTATCATCATTATTGC 59.200 37.037 23.44 0.00 31.15 3.56
2136 2173 9.049523 CAGTACTGTTGTATCATCATTATTGCT 57.950 33.333 15.06 0.00 0.00 3.91
2137 2174 9.265901 AGTACTGTTGTATCATCATTATTGCTC 57.734 33.333 0.00 0.00 0.00 4.26
2138 2175 9.265901 GTACTGTTGTATCATCATTATTGCTCT 57.734 33.333 0.00 0.00 0.00 4.09
2271 2308 5.584649 GCTAACAGTGTGATATGCCTGTTAA 59.415 40.000 0.00 0.00 44.96 2.01
2273 2310 6.892658 AACAGTGTGATATGCCTGTTAAAA 57.107 33.333 0.00 0.00 44.08 1.52
2411 2622 9.605275 TTTACAGTTCTTGAATCCTCTGATATG 57.395 33.333 0.00 0.00 0.00 1.78
2438 2649 3.561143 TCTCTTGCCTTTTGTTGCCTTA 58.439 40.909 0.00 0.00 0.00 2.69
2454 2665 2.420129 GCCTTACATCGTGGAACATCCT 60.420 50.000 0.00 0.00 44.52 3.24
2465 2676 6.683715 TCGTGGAACATCCTTTTAAAATTCC 58.316 36.000 17.68 17.68 44.52 3.01
2551 2819 7.401860 CGATGTTAGTACATTGTTGATGAAGG 58.598 38.462 0.00 0.00 44.90 3.46
2562 2830 5.798125 TGTTGATGAAGGGTTGCATTTTA 57.202 34.783 0.00 0.00 0.00 1.52
2571 2839 7.106239 TGAAGGGTTGCATTTTAAAACTGAAA 58.894 30.769 1.97 1.83 0.00 2.69
2724 2992 6.431234 AGAAGAAGTACAACATTGGGTCATTC 59.569 38.462 0.00 0.00 0.00 2.67
2824 3092 1.326548 GGCGTTGGCTATTGAACTACG 59.673 52.381 0.00 0.00 39.81 3.51
2838 3106 4.515361 TGAACTACGGTTTTTCAACAGGA 58.485 39.130 2.58 0.00 35.58 3.86
2930 3198 7.254795 GCTATAGATTCGTGCCAATGTTAACTT 60.255 37.037 3.21 0.00 0.00 2.66
2931 3199 5.296813 AGATTCGTGCCAATGTTAACTTC 57.703 39.130 7.22 0.00 0.00 3.01
2940 3208 7.145323 GTGCCAATGTTAACTTCAGTATTTGT 58.855 34.615 7.22 0.00 0.00 2.83
2993 3261 6.351966 GCTCAGTACCCCTCTGTAATAAGTTT 60.352 42.308 0.00 0.00 34.86 2.66
2995 3263 6.070424 TCAGTACCCCTCTGTAATAAGTTTGG 60.070 42.308 0.00 0.00 34.86 3.28
3176 3444 6.345096 AGCTTGTGGTTATAAATGCAGTTT 57.655 33.333 4.05 2.06 0.00 2.66
3255 3524 3.202906 TGTCAGGAAACAGCTTGTGTAC 58.797 45.455 0.00 0.00 39.03 2.90
3264 3533 4.317671 ACAGCTTGTGTACGTTCTAACT 57.682 40.909 0.00 0.00 37.75 2.24
3279 3548 7.311408 ACGTTCTAACTATCTCCTGTGTTAAC 58.689 38.462 0.00 0.00 0.00 2.01
3535 3804 0.979665 CTGAGAAGAAGGCCACCTCA 59.020 55.000 5.01 8.81 30.89 3.86
3634 3903 2.028020 GTCCTCGGAACTTGATGACCTT 60.028 50.000 0.00 0.00 0.00 3.50
3667 3936 1.250840 TGAAGAGCTAGCCTGTCGCA 61.251 55.000 12.13 4.24 41.38 5.10
3813 4082 4.832608 GTGATGACGACCCCGGCC 62.833 72.222 0.00 0.00 44.97 6.13
3846 4119 1.153429 GGCGTAGATGACCACCACC 60.153 63.158 0.00 0.00 0.00 4.61
3900 4173 0.305617 CATGGTGATTCGTGATGGCG 59.694 55.000 0.00 0.00 0.00 5.69
3980 4253 0.908910 TGTAGCATCCCGGTGAATGT 59.091 50.000 0.00 0.00 0.00 2.71
4010 4283 2.286523 CCTCCAGGGTTCGCTGTCT 61.287 63.158 14.06 0.00 0.00 3.41
4048 4321 1.227823 TGGTTTCCGTCAGCACCAG 60.228 57.895 0.00 0.00 34.23 4.00
4242 4530 3.378742 TCACTGTTTGCACGTATGGTTTT 59.621 39.130 0.00 0.00 0.00 2.43
4316 4604 3.995048 CGAACTAGAAAGGGAACAACTCC 59.005 47.826 0.00 0.00 44.54 3.85
4352 4640 5.659440 TCAACCAAAGCAAAAGAGAAACT 57.341 34.783 0.00 0.00 0.00 2.66
4372 4660 5.931441 ACTGGATCTTTGAAAAAGTCTCG 57.069 39.130 0.00 0.00 0.00 4.04
4399 4688 3.071747 GGAACTTAGATCATCTGGTCCCC 59.928 52.174 0.00 0.00 0.00 4.81
4441 4732 7.773224 CCAATCATACTGTTCCAAAGTACCATA 59.227 37.037 0.00 0.00 33.11 2.74
4442 4733 8.612619 CAATCATACTGTTCCAAAGTACCATAC 58.387 37.037 0.00 0.00 33.11 2.39
4490 4782 0.036164 TGTAGAACGCACAATGGGCT 59.964 50.000 5.74 0.00 33.10 5.19
4491 4783 1.165270 GTAGAACGCACAATGGGCTT 58.835 50.000 5.74 0.00 33.10 4.35
4534 4826 8.847444 AATAGTTGTTATCTACTACCGTTTCG 57.153 34.615 0.00 0.00 35.51 3.46
4555 4847 6.532365 TCGCAAAAAGAAAAACAAGTTGTT 57.468 29.167 15.58 15.58 43.41 2.83
4556 4848 6.585852 TCGCAAAAAGAAAAACAAGTTGTTC 58.414 32.000 21.10 9.67 40.14 3.18
4557 4849 5.788041 CGCAAAAAGAAAAACAAGTTGTTCC 59.212 36.000 21.10 13.15 40.14 3.62
4558 4850 6.347321 CGCAAAAAGAAAAACAAGTTGTTCCT 60.347 34.615 21.10 14.96 40.14 3.36
4559 4851 7.148722 CGCAAAAAGAAAAACAAGTTGTTCCTA 60.149 33.333 21.10 0.00 40.14 2.94
4560 4852 7.955324 GCAAAAAGAAAAACAAGTTGTTCCTAC 59.045 33.333 21.10 12.69 40.14 3.18
4561 4853 8.440059 CAAAAAGAAAAACAAGTTGTTCCTACC 58.560 33.333 21.10 9.39 40.14 3.18
4562 4854 6.844097 AAGAAAAACAAGTTGTTCCTACCA 57.156 33.333 21.10 0.00 40.14 3.25
4563 4855 6.203808 AGAAAAACAAGTTGTTCCTACCAC 57.796 37.500 21.10 9.08 40.14 4.16
4564 4856 4.625972 AAAACAAGTTGTTCCTACCACG 57.374 40.909 21.10 0.00 40.14 4.94
4565 4857 2.994186 ACAAGTTGTTCCTACCACGT 57.006 45.000 1.64 0.00 0.00 4.49
4566 4858 2.557317 ACAAGTTGTTCCTACCACGTG 58.443 47.619 9.08 9.08 36.14 4.49
4567 4859 2.168936 ACAAGTTGTTCCTACCACGTGA 59.831 45.455 19.30 0.00 34.52 4.35
4568 4860 2.521105 AGTTGTTCCTACCACGTGAC 57.479 50.000 19.30 6.49 0.00 3.67
4569 4861 1.758280 AGTTGTTCCTACCACGTGACA 59.242 47.619 19.30 9.41 0.00 3.58
4570 4862 1.862827 GTTGTTCCTACCACGTGACAC 59.137 52.381 19.30 4.58 0.00 3.67
4571 4863 1.112950 TGTTCCTACCACGTGACACA 58.887 50.000 19.30 7.18 0.00 3.72
4572 4864 1.689813 TGTTCCTACCACGTGACACAT 59.310 47.619 19.30 0.00 0.00 3.21
4573 4865 2.066262 GTTCCTACCACGTGACACATG 58.934 52.381 19.30 0.00 0.00 3.21
4574 4866 1.334160 TCCTACCACGTGACACATGT 58.666 50.000 19.30 7.66 33.47 3.21
4581 4873 1.194547 CACGTGACACATGTGGTAAGC 59.805 52.381 28.64 13.03 44.71 3.09
4582 4874 1.202592 ACGTGACACATGTGGTAAGCA 60.203 47.619 28.64 15.24 31.87 3.91
4583 4875 1.870402 CGTGACACATGTGGTAAGCAA 59.130 47.619 28.64 4.27 34.19 3.91
4584 4876 2.483877 CGTGACACATGTGGTAAGCAAT 59.516 45.455 28.64 5.90 34.19 3.56
4585 4877 3.424829 CGTGACACATGTGGTAAGCAATC 60.425 47.826 28.64 14.99 34.19 2.67
4586 4878 2.741517 TGACACATGTGGTAAGCAATCG 59.258 45.455 28.64 0.23 34.19 3.34
4587 4879 3.000041 GACACATGTGGTAAGCAATCGA 59.000 45.455 28.64 0.00 34.19 3.59
4588 4880 3.407698 ACACATGTGGTAAGCAATCGAA 58.592 40.909 28.64 0.00 34.19 3.71
4589 4881 3.818210 ACACATGTGGTAAGCAATCGAAA 59.182 39.130 28.64 0.00 34.19 3.46
4590 4882 4.158384 CACATGTGGTAAGCAATCGAAAC 58.842 43.478 18.51 0.00 0.00 2.78
4591 4883 3.818210 ACATGTGGTAAGCAATCGAAACA 59.182 39.130 0.00 0.00 0.00 2.83
4592 4884 4.277174 ACATGTGGTAAGCAATCGAAACAA 59.723 37.500 0.00 0.00 0.00 2.83
4593 4885 5.048083 ACATGTGGTAAGCAATCGAAACAAT 60.048 36.000 0.00 0.00 0.00 2.71
4594 4886 5.446143 TGTGGTAAGCAATCGAAACAATT 57.554 34.783 0.00 0.00 0.00 2.32
4595 4887 5.457140 TGTGGTAAGCAATCGAAACAATTC 58.543 37.500 0.00 0.00 0.00 2.17
4596 4888 5.009110 TGTGGTAAGCAATCGAAACAATTCA 59.991 36.000 0.00 0.00 35.15 2.57
4597 4889 5.918011 GTGGTAAGCAATCGAAACAATTCAA 59.082 36.000 0.00 0.00 35.15 2.69
4598 4890 6.419413 GTGGTAAGCAATCGAAACAATTCAAA 59.581 34.615 0.00 0.00 35.15 2.69
4599 4891 6.980978 TGGTAAGCAATCGAAACAATTCAAAA 59.019 30.769 0.00 0.00 35.15 2.44
4600 4892 7.492669 TGGTAAGCAATCGAAACAATTCAAAAA 59.507 29.630 0.00 0.00 35.15 1.94
4620 4912 6.510879 AAAAATAAGTTGTTCCTCCGATCC 57.489 37.500 0.00 0.00 0.00 3.36
4621 4913 4.837093 AATAAGTTGTTCCTCCGATCCA 57.163 40.909 0.00 0.00 0.00 3.41
4622 4914 4.837093 ATAAGTTGTTCCTCCGATCCAA 57.163 40.909 0.00 0.00 0.00 3.53
4623 4915 3.502123 AAGTTGTTCCTCCGATCCAAA 57.498 42.857 0.00 0.00 0.00 3.28
4624 4916 3.502123 AGTTGTTCCTCCGATCCAAAA 57.498 42.857 0.00 0.00 0.00 2.44
4625 4917 4.034285 AGTTGTTCCTCCGATCCAAAAT 57.966 40.909 0.00 0.00 0.00 1.82
4626 4918 5.174037 AGTTGTTCCTCCGATCCAAAATA 57.826 39.130 0.00 0.00 0.00 1.40
4627 4919 5.566469 AGTTGTTCCTCCGATCCAAAATAA 58.434 37.500 0.00 0.00 0.00 1.40
4628 4920 5.648092 AGTTGTTCCTCCGATCCAAAATAAG 59.352 40.000 0.00 0.00 0.00 1.73
4629 4921 5.174037 TGTTCCTCCGATCCAAAATAAGT 57.826 39.130 0.00 0.00 0.00 2.24
4630 4922 4.941263 TGTTCCTCCGATCCAAAATAAGTG 59.059 41.667 0.00 0.00 0.00 3.16
4631 4923 4.837093 TCCTCCGATCCAAAATAAGTGT 57.163 40.909 0.00 0.00 0.00 3.55
4632 4924 4.766375 TCCTCCGATCCAAAATAAGTGTC 58.234 43.478 0.00 0.00 0.00 3.67
4633 4925 3.555956 CCTCCGATCCAAAATAAGTGTCG 59.444 47.826 0.00 0.00 0.00 4.35
4634 4926 2.933906 TCCGATCCAAAATAAGTGTCGC 59.066 45.455 0.00 0.00 0.00 5.19
4635 4927 2.675844 CCGATCCAAAATAAGTGTCGCA 59.324 45.455 0.00 0.00 0.00 5.10
4636 4928 3.242413 CCGATCCAAAATAAGTGTCGCAG 60.242 47.826 0.00 0.00 0.00 5.18
4637 4929 3.370978 CGATCCAAAATAAGTGTCGCAGT 59.629 43.478 0.00 0.00 0.00 4.40
4638 4930 4.142902 CGATCCAAAATAAGTGTCGCAGTT 60.143 41.667 5.48 5.48 0.00 3.16
4639 4931 5.616866 CGATCCAAAATAAGTGTCGCAGTTT 60.617 40.000 5.46 0.00 0.00 2.66
4640 4932 5.508200 TCCAAAATAAGTGTCGCAGTTTT 57.492 34.783 5.46 0.00 0.00 2.43
4641 4933 6.621316 TCCAAAATAAGTGTCGCAGTTTTA 57.379 33.333 5.46 0.00 0.00 1.52
4642 4934 7.209471 TCCAAAATAAGTGTCGCAGTTTTAT 57.791 32.000 5.46 0.00 0.00 1.40
4643 4935 7.302524 TCCAAAATAAGTGTCGCAGTTTTATC 58.697 34.615 5.46 0.00 0.00 1.75
4644 4936 7.041030 TCCAAAATAAGTGTCGCAGTTTTATCA 60.041 33.333 5.46 0.00 0.00 2.15
4645 4937 7.271223 CCAAAATAAGTGTCGCAGTTTTATCAG 59.729 37.037 5.46 0.00 0.00 2.90
4646 4938 7.667043 AAATAAGTGTCGCAGTTTTATCAGA 57.333 32.000 5.46 0.00 0.00 3.27
4647 4939 7.667043 AATAAGTGTCGCAGTTTTATCAGAA 57.333 32.000 5.46 0.00 0.00 3.02
4648 4940 7.849804 ATAAGTGTCGCAGTTTTATCAGAAT 57.150 32.000 5.46 0.00 0.00 2.40
4649 4941 8.942338 ATAAGTGTCGCAGTTTTATCAGAATA 57.058 30.769 5.46 0.00 0.00 1.75
4650 4942 7.849804 AAGTGTCGCAGTTTTATCAGAATAT 57.150 32.000 0.00 0.00 0.00 1.28
4651 4943 7.239166 AGTGTCGCAGTTTTATCAGAATATG 57.761 36.000 0.00 0.00 0.00 1.78
4652 4944 7.041721 AGTGTCGCAGTTTTATCAGAATATGA 58.958 34.615 0.00 0.00 43.70 2.15
4653 4945 7.549134 AGTGTCGCAGTTTTATCAGAATATGAA 59.451 33.333 0.00 0.00 42.53 2.57
4654 4946 8.338259 GTGTCGCAGTTTTATCAGAATATGAAT 58.662 33.333 0.00 0.00 42.53 2.57
4655 4947 9.541143 TGTCGCAGTTTTATCAGAATATGAATA 57.459 29.630 0.00 0.00 42.53 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.242897 TTACCGCCAGAACCCGTGG 62.243 63.158 0.00 0.00 38.21 4.94
4 5 1.740296 CTTACCGCCAGAACCCGTG 60.740 63.158 0.00 0.00 0.00 4.94
5 6 2.660802 CTTACCGCCAGAACCCGT 59.339 61.111 0.00 0.00 0.00 5.28
6 7 2.125269 CCTTACCGCCAGAACCCG 60.125 66.667 0.00 0.00 0.00 5.28
7 8 0.251033 AAACCTTACCGCCAGAACCC 60.251 55.000 0.00 0.00 0.00 4.11
8 9 2.477845 TAAACCTTACCGCCAGAACC 57.522 50.000 0.00 0.00 0.00 3.62
9 10 3.140623 TGTTAAACCTTACCGCCAGAAC 58.859 45.455 0.00 0.00 0.00 3.01
10 11 3.488778 TGTTAAACCTTACCGCCAGAA 57.511 42.857 0.00 0.00 0.00 3.02
11 12 3.404899 CTTGTTAAACCTTACCGCCAGA 58.595 45.455 0.00 0.00 0.00 3.86
12 13 2.095415 GCTTGTTAAACCTTACCGCCAG 60.095 50.000 0.00 0.00 0.00 4.85
13 14 1.881324 GCTTGTTAAACCTTACCGCCA 59.119 47.619 0.00 0.00 0.00 5.69
14 15 2.156917 AGCTTGTTAAACCTTACCGCC 58.843 47.619 0.00 0.00 0.00 6.13
15 16 3.125829 GGTAGCTTGTTAAACCTTACCGC 59.874 47.826 0.00 0.00 0.00 5.68
16 17 3.368843 CGGTAGCTTGTTAAACCTTACCG 59.631 47.826 0.00 5.88 41.19 4.02
17 18 3.125829 GCGGTAGCTTGTTAAACCTTACC 59.874 47.826 0.00 0.00 41.01 2.85
18 19 3.125829 GGCGGTAGCTTGTTAAACCTTAC 59.874 47.826 0.00 0.00 44.37 2.34
19 20 3.244491 TGGCGGTAGCTTGTTAAACCTTA 60.244 43.478 0.00 0.00 44.37 2.69
20 21 2.156917 GGCGGTAGCTTGTTAAACCTT 58.843 47.619 0.00 0.00 44.37 3.50
21 22 1.072648 TGGCGGTAGCTTGTTAAACCT 59.927 47.619 0.00 0.00 44.37 3.50
22 23 1.467342 CTGGCGGTAGCTTGTTAAACC 59.533 52.381 0.00 0.00 44.37 3.27
23 24 1.467342 CCTGGCGGTAGCTTGTTAAAC 59.533 52.381 0.00 0.00 44.37 2.01
24 25 1.612199 CCCTGGCGGTAGCTTGTTAAA 60.612 52.381 0.00 0.00 44.37 1.52
25 26 0.035820 CCCTGGCGGTAGCTTGTTAA 60.036 55.000 0.00 0.00 44.37 2.01
26 27 1.196104 ACCCTGGCGGTAGCTTGTTA 61.196 55.000 0.00 0.00 45.97 2.41
27 28 2.351276 CCCTGGCGGTAGCTTGTT 59.649 61.111 0.00 0.00 44.37 2.83
28 29 2.928396 ACCCTGGCGGTAGCTTGT 60.928 61.111 0.00 0.00 45.97 3.16
41 42 2.363361 CCTACCGTCAGGGACCCT 59.637 66.667 7.44 7.44 43.47 4.34
42 43 2.578586 TAGCCTACCGTCAGGGACCC 62.579 65.000 0.59 0.59 43.47 4.46
43 44 1.076485 TAGCCTACCGTCAGGGACC 60.076 63.158 0.00 0.00 43.47 4.46
44 45 0.395448 AGTAGCCTACCGTCAGGGAC 60.395 60.000 0.00 0.00 43.47 4.46
45 46 0.333993 AAGTAGCCTACCGTCAGGGA 59.666 55.000 0.00 0.00 43.47 4.20
46 47 0.460311 CAAGTAGCCTACCGTCAGGG 59.540 60.000 0.00 0.00 43.47 4.45
47 48 1.134560 GACAAGTAGCCTACCGTCAGG 59.865 57.143 14.15 0.00 45.13 3.86
48 49 1.134560 GGACAAGTAGCCTACCGTCAG 59.865 57.143 18.51 1.33 34.83 3.51
49 50 1.180029 GGACAAGTAGCCTACCGTCA 58.820 55.000 18.51 0.00 34.83 4.35
50 51 1.135170 GTGGACAAGTAGCCTACCGTC 60.135 57.143 11.70 11.70 33.31 4.79
51 52 0.893447 GTGGACAAGTAGCCTACCGT 59.107 55.000 0.00 0.00 0.00 4.83
52 53 0.179145 CGTGGACAAGTAGCCTACCG 60.179 60.000 0.00 0.00 0.00 4.02
53 54 0.893447 ACGTGGACAAGTAGCCTACC 59.107 55.000 0.00 0.00 0.00 3.18
54 55 1.542915 TGACGTGGACAAGTAGCCTAC 59.457 52.381 0.00 0.00 0.00 3.18
55 56 1.816835 CTGACGTGGACAAGTAGCCTA 59.183 52.381 0.00 0.00 0.00 3.93
56 57 0.603569 CTGACGTGGACAAGTAGCCT 59.396 55.000 0.00 0.00 0.00 4.58
57 58 1.014564 GCTGACGTGGACAAGTAGCC 61.015 60.000 0.00 0.00 0.00 3.93
58 59 0.038159 AGCTGACGTGGACAAGTAGC 60.038 55.000 0.00 9.75 0.00 3.58
59 60 1.729472 CGAGCTGACGTGGACAAGTAG 60.729 57.143 0.00 0.00 0.00 2.57
60 61 0.240145 CGAGCTGACGTGGACAAGTA 59.760 55.000 0.00 0.00 0.00 2.24
61 62 1.007271 CGAGCTGACGTGGACAAGT 60.007 57.895 0.00 0.00 0.00 3.16
62 63 1.734477 CCGAGCTGACGTGGACAAG 60.734 63.158 0.00 0.00 0.00 3.16
63 64 2.338620 CCGAGCTGACGTGGACAA 59.661 61.111 0.00 0.00 0.00 3.18
64 65 3.680786 CCCGAGCTGACGTGGACA 61.681 66.667 0.00 0.00 0.00 4.02
67 68 4.680237 TTGCCCGAGCTGACGTGG 62.680 66.667 0.00 0.00 40.80 4.94
68 69 2.664851 TTTGCCCGAGCTGACGTG 60.665 61.111 0.00 0.00 40.80 4.49
69 70 2.665185 GTTTGCCCGAGCTGACGT 60.665 61.111 0.00 0.00 40.80 4.34
70 71 3.777925 CGTTTGCCCGAGCTGACG 61.778 66.667 0.00 3.71 39.97 4.35
71 72 3.423154 CCGTTTGCCCGAGCTGAC 61.423 66.667 0.00 0.00 40.80 3.51
93 94 4.498520 ATGCGACAGAGGGCGACG 62.499 66.667 0.00 0.00 0.00 5.12
94 95 2.583593 GATGCGACAGAGGGCGAC 60.584 66.667 0.00 0.00 0.00 5.19
95 96 2.904178 TAGGATGCGACAGAGGGCGA 62.904 60.000 0.00 0.00 0.00 5.54
96 97 2.490148 TAGGATGCGACAGAGGGCG 61.490 63.158 0.00 0.00 0.00 6.13
97 98 1.068250 GTAGGATGCGACAGAGGGC 59.932 63.158 0.00 0.00 0.00 5.19
98 99 0.387202 CAGTAGGATGCGACAGAGGG 59.613 60.000 0.00 0.00 0.00 4.30
99 100 0.249238 GCAGTAGGATGCGACAGAGG 60.249 60.000 0.00 0.00 36.28 3.69
100 101 3.264666 GCAGTAGGATGCGACAGAG 57.735 57.895 0.00 0.00 36.28 3.35
107 108 1.147153 GACCCTGGCAGTAGGATGC 59.853 63.158 14.43 0.83 45.74 3.91
108 109 1.700042 GGGACCCTGGCAGTAGGATG 61.700 65.000 14.43 0.00 40.42 3.51
109 110 1.384643 GGGACCCTGGCAGTAGGAT 60.385 63.158 14.43 0.00 40.42 3.24
110 111 2.040606 GGGACCCTGGCAGTAGGA 59.959 66.667 14.43 0.00 40.42 2.94
111 112 2.041265 AGGGACCCTGGCAGTAGG 59.959 66.667 13.95 10.97 37.59 3.18
122 123 3.480133 ATGCTACCGCCAGGGACC 61.480 66.667 0.00 0.00 43.47 4.46
123 124 2.203070 CATGCTACCGCCAGGGAC 60.203 66.667 0.00 0.00 43.47 4.46
124 125 2.687200 ACATGCTACCGCCAGGGA 60.687 61.111 0.00 0.00 43.47 4.20
125 126 1.399744 TAGACATGCTACCGCCAGGG 61.400 60.000 0.00 0.00 43.47 4.45
126 127 0.464036 TTAGACATGCTACCGCCAGG 59.536 55.000 0.00 0.00 45.13 4.45
127 128 1.571919 GTTAGACATGCTACCGCCAG 58.428 55.000 0.00 0.00 34.43 4.85
128 129 0.177141 GGTTAGACATGCTACCGCCA 59.823 55.000 0.00 0.00 34.43 5.69
129 130 0.532196 GGGTTAGACATGCTACCGCC 60.532 60.000 0.00 0.00 34.43 6.13
130 131 0.464452 AGGGTTAGACATGCTACCGC 59.536 55.000 0.00 0.00 0.00 5.68
131 132 2.957006 AGTAGGGTTAGACATGCTACCG 59.043 50.000 0.00 0.00 0.00 4.02
132 133 3.492829 GCAGTAGGGTTAGACATGCTACC 60.493 52.174 0.00 0.00 0.00 3.18
133 134 3.492829 GGCAGTAGGGTTAGACATGCTAC 60.493 52.174 0.00 0.00 32.89 3.58
134 135 2.698797 GGCAGTAGGGTTAGACATGCTA 59.301 50.000 0.00 0.00 32.89 3.49
135 136 1.486726 GGCAGTAGGGTTAGACATGCT 59.513 52.381 0.00 0.00 32.89 3.79
136 137 1.209504 TGGCAGTAGGGTTAGACATGC 59.790 52.381 0.00 0.00 0.00 4.06
137 138 2.158900 CCTGGCAGTAGGGTTAGACATG 60.159 54.545 14.43 0.00 34.06 3.21
138 139 2.119495 CCTGGCAGTAGGGTTAGACAT 58.881 52.381 14.43 0.00 34.06 3.06
139 140 1.078159 TCCTGGCAGTAGGGTTAGACA 59.922 52.381 14.43 0.00 38.42 3.41
140 141 1.481363 GTCCTGGCAGTAGGGTTAGAC 59.519 57.143 14.43 7.11 38.42 2.59
141 142 1.621622 GGTCCTGGCAGTAGGGTTAGA 60.622 57.143 14.43 0.00 38.42 2.10
142 143 0.831307 GGTCCTGGCAGTAGGGTTAG 59.169 60.000 14.43 0.00 38.42 2.34
143 144 0.619543 GGGTCCTGGCAGTAGGGTTA 60.620 60.000 14.43 0.00 38.42 2.85
144 145 1.923909 GGGTCCTGGCAGTAGGGTT 60.924 63.158 14.43 0.00 38.42 4.11
145 146 2.285442 GGGTCCTGGCAGTAGGGT 60.285 66.667 14.43 0.00 38.42 4.34
146 147 3.090532 GGGGTCCTGGCAGTAGGG 61.091 72.222 14.43 0.00 38.42 3.53
147 148 2.041265 AGGGGTCCTGGCAGTAGG 59.959 66.667 14.43 0.00 39.29 3.18
156 157 1.152440 CGCTATCTCCAGGGGTCCT 60.152 63.158 0.00 0.00 0.00 3.85
157 158 0.759436 TTCGCTATCTCCAGGGGTCC 60.759 60.000 0.00 0.00 0.00 4.46
158 159 1.069358 CTTTCGCTATCTCCAGGGGTC 59.931 57.143 0.00 0.00 0.00 4.46
159 160 1.123928 CTTTCGCTATCTCCAGGGGT 58.876 55.000 0.00 0.00 0.00 4.95
160 161 0.394565 CCTTTCGCTATCTCCAGGGG 59.605 60.000 0.00 0.00 0.00 4.79
161 162 0.394565 CCCTTTCGCTATCTCCAGGG 59.605 60.000 0.00 0.00 35.21 4.45
162 163 1.069358 GACCCTTTCGCTATCTCCAGG 59.931 57.143 0.00 0.00 0.00 4.45
163 164 1.757118 TGACCCTTTCGCTATCTCCAG 59.243 52.381 0.00 0.00 0.00 3.86
164 165 1.757118 CTGACCCTTTCGCTATCTCCA 59.243 52.381 0.00 0.00 0.00 3.86
165 166 2.032620 TCTGACCCTTTCGCTATCTCC 58.967 52.381 0.00 0.00 0.00 3.71
166 167 3.572255 AGATCTGACCCTTTCGCTATCTC 59.428 47.826 0.00 0.00 0.00 2.75
167 168 3.571590 AGATCTGACCCTTTCGCTATCT 58.428 45.455 0.00 0.00 0.00 1.98
168 169 3.610585 CGAGATCTGACCCTTTCGCTATC 60.611 52.174 0.00 0.00 0.00 2.08
169 170 2.294791 CGAGATCTGACCCTTTCGCTAT 59.705 50.000 0.00 0.00 0.00 2.97
170 171 1.676529 CGAGATCTGACCCTTTCGCTA 59.323 52.381 0.00 0.00 0.00 4.26
171 172 0.457851 CGAGATCTGACCCTTTCGCT 59.542 55.000 0.00 0.00 0.00 4.93
172 173 0.456221 TCGAGATCTGACCCTTTCGC 59.544 55.000 0.00 0.00 0.00 4.70
173 174 2.941453 TTCGAGATCTGACCCTTTCG 57.059 50.000 0.00 0.00 0.00 3.46
174 175 6.502136 AAATTTTCGAGATCTGACCCTTTC 57.498 37.500 0.00 0.00 0.00 2.62
175 176 6.901081 AAAATTTTCGAGATCTGACCCTTT 57.099 33.333 0.00 0.00 0.00 3.11
176 177 6.502136 GAAAATTTTCGAGATCTGACCCTT 57.498 37.500 14.83 0.00 0.00 3.95
190 191 4.851010 TGACCTCGGTTTCGAAAATTTTC 58.149 39.130 19.08 19.08 45.47 2.29
191 192 4.577283 TCTGACCTCGGTTTCGAAAATTTT 59.423 37.500 13.10 2.28 45.47 1.82
192 193 4.131596 TCTGACCTCGGTTTCGAAAATTT 58.868 39.130 13.10 0.00 45.47 1.82
193 194 3.735591 TCTGACCTCGGTTTCGAAAATT 58.264 40.909 13.10 0.00 45.47 1.82
194 195 3.396260 TCTGACCTCGGTTTCGAAAAT 57.604 42.857 13.10 0.00 45.47 1.82
195 196 2.894763 TCTGACCTCGGTTTCGAAAA 57.105 45.000 13.10 0.00 45.47 2.29
196 197 2.353406 GGATCTGACCTCGGTTTCGAAA 60.353 50.000 6.47 6.47 45.47 3.46
197 198 1.203994 GGATCTGACCTCGGTTTCGAA 59.796 52.381 0.00 0.00 45.47 3.71
198 199 0.815734 GGATCTGACCTCGGTTTCGA 59.184 55.000 0.00 0.00 43.86 3.71
199 200 0.818296 AGGATCTGACCTCGGTTTCG 59.182 55.000 0.00 0.00 34.98 3.46
200 201 1.825474 TCAGGATCTGACCTCGGTTTC 59.175 52.381 0.00 0.00 38.32 2.78
201 202 1.938585 TCAGGATCTGACCTCGGTTT 58.061 50.000 0.00 0.00 38.32 3.27
202 203 1.938585 TTCAGGATCTGACCTCGGTT 58.061 50.000 0.00 0.00 40.46 4.44
203 204 2.166907 ATTCAGGATCTGACCTCGGT 57.833 50.000 0.00 0.00 40.46 4.69
204 205 3.550437 AAATTCAGGATCTGACCTCGG 57.450 47.619 0.00 0.00 40.46 4.63
205 206 6.749578 CGATATAAATTCAGGATCTGACCTCG 59.250 42.308 0.00 0.00 40.46 4.63
206 207 7.831753 TCGATATAAATTCAGGATCTGACCTC 58.168 38.462 0.00 0.00 40.46 3.85
207 208 7.782897 TCGATATAAATTCAGGATCTGACCT 57.217 36.000 0.00 0.00 40.46 3.85
208 209 8.833231 TTTCGATATAAATTCAGGATCTGACC 57.167 34.615 0.00 0.00 40.46 4.02
232 233 8.547894 GGCTAAATTTCGTGTTTTGATCTTTTT 58.452 29.630 0.00 0.00 0.00 1.94
233 234 7.096230 CGGCTAAATTTCGTGTTTTGATCTTTT 60.096 33.333 0.00 0.00 0.00 2.27
234 235 6.362283 CGGCTAAATTTCGTGTTTTGATCTTT 59.638 34.615 0.00 0.00 0.00 2.52
235 236 5.856455 CGGCTAAATTTCGTGTTTTGATCTT 59.144 36.000 0.00 0.00 0.00 2.40
236 237 5.390613 CGGCTAAATTTCGTGTTTTGATCT 58.609 37.500 0.00 0.00 0.00 2.75
237 238 4.030195 GCGGCTAAATTTCGTGTTTTGATC 59.970 41.667 0.00 0.00 0.00 2.92
238 239 3.917985 GCGGCTAAATTTCGTGTTTTGAT 59.082 39.130 0.00 0.00 0.00 2.57
239 240 3.003897 AGCGGCTAAATTTCGTGTTTTGA 59.996 39.130 0.00 0.00 0.00 2.69
240 241 3.305110 AGCGGCTAAATTTCGTGTTTTG 58.695 40.909 0.00 0.00 0.00 2.44
241 242 3.561503 GAGCGGCTAAATTTCGTGTTTT 58.438 40.909 0.60 0.00 0.00 2.43
242 243 2.095415 GGAGCGGCTAAATTTCGTGTTT 60.095 45.455 0.60 0.00 0.00 2.83
243 244 1.467342 GGAGCGGCTAAATTTCGTGTT 59.533 47.619 0.60 0.00 0.00 3.32
244 245 1.084289 GGAGCGGCTAAATTTCGTGT 58.916 50.000 0.60 0.00 0.00 4.49
245 246 0.026285 CGGAGCGGCTAAATTTCGTG 59.974 55.000 0.60 0.00 0.00 4.35
246 247 1.087771 CCGGAGCGGCTAAATTTCGT 61.088 55.000 0.60 0.00 41.17 3.85
247 248 1.641677 CCGGAGCGGCTAAATTTCG 59.358 57.895 0.60 0.66 41.17 3.46
248 249 0.746923 ACCCGGAGCGGCTAAATTTC 60.747 55.000 0.73 0.00 46.86 2.17
249 250 0.746923 GACCCGGAGCGGCTAAATTT 60.747 55.000 0.73 0.00 46.86 1.82
250 251 1.153229 GACCCGGAGCGGCTAAATT 60.153 57.895 0.73 0.00 46.86 1.82
251 252 2.504519 GACCCGGAGCGGCTAAAT 59.495 61.111 0.73 0.00 46.86 1.40
252 253 4.137872 CGACCCGGAGCGGCTAAA 62.138 66.667 0.73 0.00 46.86 1.85
258 259 2.884207 GTAAAGCGACCCGGAGCG 60.884 66.667 0.73 7.39 38.61 5.03
259 260 2.510918 GGTAAAGCGACCCGGAGC 60.511 66.667 0.73 5.59 32.88 4.70
260 261 2.202703 CGGTAAAGCGACCCGGAG 60.203 66.667 0.73 0.00 38.09 4.63
261 262 4.440127 GCGGTAAAGCGACCCGGA 62.440 66.667 0.73 0.00 41.96 5.14
262 263 4.745751 TGCGGTAAAGCGACCCGG 62.746 66.667 5.64 0.00 41.96 5.73
263 264 3.484547 GTGCGGTAAAGCGACCCG 61.485 66.667 5.64 0.00 44.46 5.28
358 364 2.740055 CTTGCAGCTTCGCCTCGT 60.740 61.111 0.00 0.00 0.00 4.18
945 968 1.516423 GAGGAGGGTAGCACGGTTC 59.484 63.158 0.00 0.00 0.00 3.62
947 970 2.363925 GGAGGAGGGTAGCACGGT 60.364 66.667 0.00 0.00 0.00 4.83
948 971 2.363795 TGGAGGAGGGTAGCACGG 60.364 66.667 0.00 0.00 0.00 4.94
951 974 1.612442 GTGGTGGAGGAGGGTAGCA 60.612 63.158 0.00 0.00 0.00 3.49
952 975 2.368011 GGTGGTGGAGGAGGGTAGC 61.368 68.421 0.00 0.00 0.00 3.58
1214 1250 4.626172 GCGAGGGTAAACAAACAAAAACAA 59.374 37.500 0.00 0.00 0.00 2.83
1446 1483 2.117156 AGCAGCGCAGGCATAAAGG 61.117 57.895 23.22 0.00 43.41 3.11
1589 1626 0.875059 GCTTGCTGTTGAGTACCCAC 59.125 55.000 0.00 0.00 0.00 4.61
1709 1746 1.009675 GAACACAGCCACACAAGCG 60.010 57.895 0.00 0.00 34.64 4.68
1739 1776 7.987458 AGAGAAACTAAACTCACAATCTGTTGA 59.013 33.333 0.00 0.00 38.71 3.18
1758 1795 8.171840 GCACAAATTGTATCTAGACAGAGAAAC 58.828 37.037 0.00 0.00 33.22 2.78
1770 1807 9.807649 GGAATCTAAAATGCACAAATTGTATCT 57.192 29.630 0.00 0.00 28.79 1.98
1913 1950 3.305094 ACATACGAAAGTTGGCGTTATCG 59.695 43.478 8.99 0.00 46.40 2.92
1925 1962 8.649841 TGGAAAAGTTATAACGACATACGAAAG 58.350 33.333 9.91 0.00 45.77 2.62
1978 2015 2.580589 CAAAACACCTTGGCGTTATCG 58.419 47.619 0.00 0.00 40.37 2.92
2020 2057 7.458397 TCTATAGGACATTGTTTCACCAAAGT 58.542 34.615 0.00 0.00 0.00 2.66
2084 2121 6.588756 CACCAGAAAGTGAAATCATTGAATGG 59.411 38.462 5.20 0.00 40.34 3.16
2271 2308 3.054802 TGTTGGTTTTGGTTCCATGCTTT 60.055 39.130 0.00 0.00 33.50 3.51
2273 2310 2.114616 TGTTGGTTTTGGTTCCATGCT 58.885 42.857 0.00 0.00 33.50 3.79
2381 2419 6.881065 CAGAGGATTCAAGAACTGTAAATCCA 59.119 38.462 13.29 0.00 45.08 3.41
2392 2603 9.770097 GAATACACATATCAGAGGATTCAAGAA 57.230 33.333 0.00 0.00 34.89 2.52
2393 2604 9.152327 AGAATACACATATCAGAGGATTCAAGA 57.848 33.333 0.00 0.00 34.89 3.02
2394 2605 9.421806 GAGAATACACATATCAGAGGATTCAAG 57.578 37.037 0.00 0.00 34.89 3.02
2401 2612 5.931146 GGCAAGAGAATACACATATCAGAGG 59.069 44.000 0.00 0.00 0.00 3.69
2411 2622 4.681483 GCAACAAAAGGCAAGAGAATACAC 59.319 41.667 0.00 0.00 0.00 2.90
2438 2649 6.642707 TTTTAAAAGGATGTTCCACGATGT 57.357 33.333 0.00 0.00 39.61 3.06
2454 2665 6.200475 CCAAAAGTAACCGCGGAATTTTAAAA 59.800 34.615 35.90 2.51 0.00 1.52
2465 2676 0.386731 CAAGCCCAAAAGTAACCGCG 60.387 55.000 0.00 0.00 0.00 6.46
2501 2712 6.313658 GCCCATGAAAAGTCCAAAATACATTC 59.686 38.462 0.00 0.00 0.00 2.67
2551 2819 6.603237 AGCTTTCAGTTTTAAAATGCAACC 57.397 33.333 3.52 0.00 0.00 3.77
2562 2830 4.217767 GGAATCCCGTTAGCTTTCAGTTTT 59.782 41.667 0.00 0.00 0.00 2.43
2824 3092 3.119137 ACAGTTGCTCCTGTTGAAAAACC 60.119 43.478 3.39 0.00 42.99 3.27
2838 3106 3.643792 AGGAGTGAGAACTTACAGTTGCT 59.356 43.478 0.00 0.00 38.80 3.91
2995 3263 9.310716 GATCAGATGAATTGGAAAAGGAAATTC 57.689 33.333 0.00 0.00 39.61 2.17
3078 3346 5.873164 ACGCGTTTCTTAAGAAGGATGTTAT 59.127 36.000 17.05 0.00 35.21 1.89
3176 3444 7.776107 TGATTAAAACAGAAAACATCACCACA 58.224 30.769 0.00 0.00 0.00 4.17
3255 3524 6.750963 GGTTAACACAGGAGATAGTTAGAACG 59.249 42.308 8.10 0.00 0.00 3.95
3264 3533 7.016858 ACTGTAAAAGGGTTAACACAGGAGATA 59.983 37.037 19.68 0.88 38.13 1.98
3279 3548 5.940470 AGCAGTATGAAGAACTGTAAAAGGG 59.060 40.000 5.25 0.00 45.01 3.95
3634 3903 0.617535 TCTTCATCGGGCCTTCCTCA 60.618 55.000 0.84 0.00 0.00 3.86
3667 3936 9.525826 AGAACCAAGAAGAATGAATGAATAACT 57.474 29.630 0.00 0.00 0.00 2.24
3846 4119 3.756434 TCGGCCTTGACAAATTTCCTAAG 59.244 43.478 0.00 0.00 0.00 2.18
3980 4253 2.241176 ACCCTGGAGGAATAATCGCAAA 59.759 45.455 0.00 0.00 39.89 3.68
4048 4321 1.956170 CGACAGCACACACCACTCC 60.956 63.158 0.00 0.00 0.00 3.85
4182 4463 2.168521 CTGATTCTGGCTTTCCTCGGTA 59.831 50.000 0.00 0.00 0.00 4.02
4184 4465 1.065854 ACTGATTCTGGCTTTCCTCGG 60.066 52.381 0.00 0.00 0.00 4.63
4185 4466 2.005451 CACTGATTCTGGCTTTCCTCG 58.995 52.381 0.00 0.00 0.00 4.63
4196 4477 2.173569 GGATACCCTTGCCACTGATTCT 59.826 50.000 0.00 0.00 0.00 2.40
4242 4530 4.730613 GCACTCGAGAAAAGCAAACTGAAA 60.731 41.667 21.68 0.00 0.00 2.69
4316 4604 0.598680 GGTTGATGCCCGATCGAGAG 60.599 60.000 18.66 6.02 33.17 3.20
4352 4640 3.502211 GCCGAGACTTTTTCAAAGATCCA 59.498 43.478 3.24 0.00 0.00 3.41
4372 4660 3.553922 CCAGATGATCTAAGTTCCTCGCC 60.554 52.174 0.00 0.00 0.00 5.54
4399 4688 1.969064 TGGGCATCCAACGGTTTCG 60.969 57.895 0.00 0.00 40.73 3.46
4441 4732 1.668826 TGCATTCCTTGACCCTAGGT 58.331 50.000 8.29 0.00 39.44 3.08
4442 4733 2.648059 CTTGCATTCCTTGACCCTAGG 58.352 52.381 0.06 0.06 0.00 3.02
4469 4761 1.808411 CCCATTGTGCGTTCTACACT 58.192 50.000 0.00 0.00 38.86 3.55
4473 4765 1.904287 AAAGCCCATTGTGCGTTCTA 58.096 45.000 0.00 0.00 0.00 2.10
4518 4810 6.389091 TCTTTTTGCGAAACGGTAGTAGATA 58.611 36.000 0.00 0.00 0.00 1.98
4534 4826 6.898041 AGGAACAACTTGTTTTTCTTTTTGC 58.102 32.000 8.56 0.00 41.28 3.68
4555 4847 1.000394 CACATGTGTCACGTGGTAGGA 60.000 52.381 25.31 0.00 39.36 2.94
4556 4848 1.428448 CACATGTGTCACGTGGTAGG 58.572 55.000 25.31 10.83 39.36 3.18
4557 4849 1.428448 CCACATGTGTCACGTGGTAG 58.572 55.000 25.31 15.71 44.27 3.18
4558 4850 3.597550 CCACATGTGTCACGTGGTA 57.402 52.632 25.31 1.73 44.27 3.25
4559 4851 4.454948 CCACATGTGTCACGTGGT 57.545 55.556 25.31 11.12 44.27 4.16
4561 4853 1.194547 GCTTACCACATGTGTCACGTG 59.805 52.381 23.79 21.25 40.80 4.49
4562 4854 1.202592 TGCTTACCACATGTGTCACGT 60.203 47.619 23.79 16.29 0.00 4.49
4563 4855 1.507562 TGCTTACCACATGTGTCACG 58.492 50.000 23.79 11.29 0.00 4.35
4564 4856 3.424829 CGATTGCTTACCACATGTGTCAC 60.425 47.826 23.79 9.40 0.00 3.67
4565 4857 2.741517 CGATTGCTTACCACATGTGTCA 59.258 45.455 23.79 8.71 0.00 3.58
4566 4858 3.000041 TCGATTGCTTACCACATGTGTC 59.000 45.455 23.79 11.27 0.00 3.67
4567 4859 3.052455 TCGATTGCTTACCACATGTGT 57.948 42.857 23.79 14.29 0.00 3.72
4568 4860 4.158384 GTTTCGATTGCTTACCACATGTG 58.842 43.478 19.31 19.31 0.00 3.21
4569 4861 3.818210 TGTTTCGATTGCTTACCACATGT 59.182 39.130 0.00 0.00 0.00 3.21
4570 4862 4.418013 TGTTTCGATTGCTTACCACATG 57.582 40.909 0.00 0.00 0.00 3.21
4571 4863 5.643379 ATTGTTTCGATTGCTTACCACAT 57.357 34.783 0.00 0.00 0.00 3.21
4572 4864 5.009110 TGAATTGTTTCGATTGCTTACCACA 59.991 36.000 0.00 0.00 34.39 4.17
4573 4865 5.457140 TGAATTGTTTCGATTGCTTACCAC 58.543 37.500 0.00 0.00 34.39 4.16
4574 4866 5.697473 TGAATTGTTTCGATTGCTTACCA 57.303 34.783 0.00 0.00 34.39 3.25
4575 4867 7.401484 TTTTGAATTGTTTCGATTGCTTACC 57.599 32.000 0.00 0.00 34.39 2.85
4597 4889 6.007703 TGGATCGGAGGAACAACTTATTTTT 58.992 36.000 0.00 0.00 0.00 1.94
4598 4890 5.566469 TGGATCGGAGGAACAACTTATTTT 58.434 37.500 0.00 0.00 0.00 1.82
4599 4891 5.174037 TGGATCGGAGGAACAACTTATTT 57.826 39.130 0.00 0.00 0.00 1.40
4600 4892 4.837093 TGGATCGGAGGAACAACTTATT 57.163 40.909 0.00 0.00 0.00 1.40
4601 4893 4.837093 TTGGATCGGAGGAACAACTTAT 57.163 40.909 0.00 0.00 0.00 1.73
4602 4894 4.627284 TTTGGATCGGAGGAACAACTTA 57.373 40.909 0.00 0.00 0.00 2.24
4603 4895 3.502123 TTTGGATCGGAGGAACAACTT 57.498 42.857 0.00 0.00 0.00 2.66
4604 4896 3.502123 TTTTGGATCGGAGGAACAACT 57.498 42.857 0.00 0.00 0.00 3.16
4605 4897 5.414765 ACTTATTTTGGATCGGAGGAACAAC 59.585 40.000 0.00 0.00 0.00 3.32
4606 4898 5.414454 CACTTATTTTGGATCGGAGGAACAA 59.586 40.000 0.00 0.00 0.00 2.83
4607 4899 4.941263 CACTTATTTTGGATCGGAGGAACA 59.059 41.667 0.00 0.00 0.00 3.18
4608 4900 4.941873 ACACTTATTTTGGATCGGAGGAAC 59.058 41.667 0.00 0.00 0.00 3.62
4609 4901 5.174037 ACACTTATTTTGGATCGGAGGAA 57.826 39.130 0.00 0.00 0.00 3.36
4610 4902 4.679639 CGACACTTATTTTGGATCGGAGGA 60.680 45.833 0.00 0.00 0.00 3.71
4611 4903 3.555956 CGACACTTATTTTGGATCGGAGG 59.444 47.826 0.00 0.00 0.00 4.30
4612 4904 3.001330 GCGACACTTATTTTGGATCGGAG 59.999 47.826 0.00 0.00 0.00 4.63
4613 4905 2.933906 GCGACACTTATTTTGGATCGGA 59.066 45.455 0.00 0.00 0.00 4.55
4614 4906 2.675844 TGCGACACTTATTTTGGATCGG 59.324 45.455 0.00 0.00 0.00 4.18
4615 4907 3.370978 ACTGCGACACTTATTTTGGATCG 59.629 43.478 0.00 0.00 0.00 3.69
4616 4908 4.946784 ACTGCGACACTTATTTTGGATC 57.053 40.909 0.00 0.00 0.00 3.36
4617 4909 5.705609 AAACTGCGACACTTATTTTGGAT 57.294 34.783 0.00 0.00 0.00 3.41
4618 4910 5.508200 AAAACTGCGACACTTATTTTGGA 57.492 34.783 0.00 0.00 0.00 3.53
4619 4911 7.081349 TGATAAAACTGCGACACTTATTTTGG 58.919 34.615 0.00 0.00 0.00 3.28
4620 4912 8.015087 TCTGATAAAACTGCGACACTTATTTTG 58.985 33.333 0.00 0.00 0.00 2.44
4621 4913 8.094798 TCTGATAAAACTGCGACACTTATTTT 57.905 30.769 0.00 0.00 0.00 1.82
4622 4914 7.667043 TCTGATAAAACTGCGACACTTATTT 57.333 32.000 0.00 0.00 0.00 1.40
4623 4915 7.667043 TTCTGATAAAACTGCGACACTTATT 57.333 32.000 0.00 0.00 0.00 1.40
4624 4916 7.849804 ATTCTGATAAAACTGCGACACTTAT 57.150 32.000 0.00 0.00 0.00 1.73
4625 4917 8.817100 CATATTCTGATAAAACTGCGACACTTA 58.183 33.333 0.00 0.00 0.00 2.24
4626 4918 7.549134 TCATATTCTGATAAAACTGCGACACTT 59.451 33.333 0.00 0.00 0.00 3.16
4627 4919 7.041721 TCATATTCTGATAAAACTGCGACACT 58.958 34.615 0.00 0.00 0.00 3.55
4628 4920 7.234187 TCATATTCTGATAAAACTGCGACAC 57.766 36.000 0.00 0.00 0.00 3.67
4629 4921 7.841915 TTCATATTCTGATAAAACTGCGACA 57.158 32.000 0.00 0.00 32.72 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.