Multiple sequence alignment - TraesCS2B01G218200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G218200 chr2B 100.000 3538 0 0 1 3538 207059535 207063072 0.000000e+00 6534
1 TraesCS2B01G218200 chr2A 93.769 1942 96 12 780 2699 155161101 155159163 0.000000e+00 2892
2 TraesCS2B01G218200 chr2A 87.500 264 21 3 3196 3448 444019908 444020170 9.600000e-76 294
3 TraesCS2B01G218200 chr2A 85.496 262 24 4 3197 3448 746822546 746822803 9.740000e-66 261
4 TraesCS2B01G218200 chr2A 87.671 219 15 3 573 779 155161362 155161144 9.810000e-61 244
5 TraesCS2B01G218200 chr2A 87.317 205 15 6 360 555 155161620 155161418 1.280000e-54 224
6 TraesCS2B01G218200 chr2D 93.320 1961 106 13 781 2726 147352059 147354009 0.000000e+00 2872
7 TraesCS2B01G218200 chr2D 85.933 654 58 15 2907 3538 147382892 147383533 0.000000e+00 667
8 TraesCS2B01G218200 chr2D 81.664 529 61 17 40 555 147351249 147351754 1.180000e-109 407
9 TraesCS2B01G218200 chr2D 90.654 214 13 2 573 779 147351810 147352023 9.670000e-71 278
10 TraesCS2B01G218200 chr5D 88.593 263 18 3 3197 3448 178479623 178479884 3.430000e-80 309
11 TraesCS2B01G218200 chr3A 87.023 262 20 4 3197 3448 584892649 584892392 2.080000e-72 283
12 TraesCS2B01G218200 chr3A 86.312 263 24 3 3197 3448 631872293 631872554 3.480000e-70 276
13 TraesCS2B01G218200 chr3A 85.878 262 23 4 3197 3448 6662600 6662343 2.090000e-67 267
14 TraesCS2B01G218200 chr4A 86.641 262 21 4 3197 3448 560892315 560892572 9.670000e-71 278
15 TraesCS2B01G218200 chr1D 86.056 251 21 5 3197 3437 264343098 264342852 1.260000e-64 257


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G218200 chr2B 207059535 207063072 3537 False 6534.000000 6534 100.000000 1 3538 1 chr2B.!!$F1 3537
1 TraesCS2B01G218200 chr2A 155159163 155161620 2457 True 1120.000000 2892 89.585667 360 2699 3 chr2A.!!$R1 2339
2 TraesCS2B01G218200 chr2D 147351249 147354009 2760 False 1185.666667 2872 88.546000 40 2726 3 chr2D.!!$F2 2686
3 TraesCS2B01G218200 chr2D 147382892 147383533 641 False 667.000000 667 85.933000 2907 3538 1 chr2D.!!$F1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
716 790 0.253044 TTCTGCGGGAATGAAGAGGG 59.747 55.0 0.00 0.00 0.00 4.30 F
1104 1227 0.246635 ACGGTGAGAATGAACTCCCG 59.753 55.0 17.15 17.15 46.08 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1520 1649 0.041833 AGTAGCAGAGGGAGCCAAGA 59.958 55.0 0.00 0.0 0.00 3.02 R
2742 2885 0.040603 GGAGGGAGTACGCGATAACG 60.041 60.0 15.93 0.0 42.93 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 5.738909 TGATTTGAATGTGTTTGGTTGGTT 58.261 33.333 0.00 0.00 0.00 3.67
68 69 7.331026 TGATTTGAATGTGTTTGGTTGGTTTA 58.669 30.769 0.00 0.00 0.00 2.01
69 70 6.969828 TTTGAATGTGTTTGGTTGGTTTAC 57.030 33.333 0.00 0.00 0.00 2.01
70 71 5.923733 TGAATGTGTTTGGTTGGTTTACT 57.076 34.783 0.00 0.00 0.00 2.24
71 72 5.897050 TGAATGTGTTTGGTTGGTTTACTC 58.103 37.500 0.00 0.00 0.00 2.59
72 73 5.654650 TGAATGTGTTTGGTTGGTTTACTCT 59.345 36.000 0.00 0.00 0.00 3.24
73 74 6.153680 TGAATGTGTTTGGTTGGTTTACTCTT 59.846 34.615 0.00 0.00 0.00 2.85
74 75 7.339721 TGAATGTGTTTGGTTGGTTTACTCTTA 59.660 33.333 0.00 0.00 0.00 2.10
77 78 7.337167 TGTGTTTGGTTGGTTTACTCTTACTA 58.663 34.615 0.00 0.00 0.00 1.82
78 79 7.496591 TGTGTTTGGTTGGTTTACTCTTACTAG 59.503 37.037 0.00 0.00 0.00 2.57
79 80 7.496920 GTGTTTGGTTGGTTTACTCTTACTAGT 59.503 37.037 0.00 0.00 0.00 2.57
84 88 9.092338 TGGTTGGTTTACTCTTACTAGTCAATA 57.908 33.333 0.00 0.00 0.00 1.90
105 109 8.138074 TCAATATTCTGACTCGGAATCTACAAG 58.862 37.037 15.22 3.71 39.73 3.16
127 131 3.502164 CCATAGGGCCTTGTCCTTG 57.498 57.895 13.45 0.25 39.09 3.61
134 138 1.378762 GCCTTGTCCTTGGGCACTA 59.621 57.895 0.00 0.00 44.69 2.74
141 145 1.078426 CCTTGGGCACTAGTTCCCG 60.078 63.158 23.46 11.56 45.60 5.14
153 157 0.752376 AGTTCCCGTTTCGCCCAAAA 60.752 50.000 0.00 0.00 0.00 2.44
155 159 0.599060 TTCCCGTTTCGCCCAAAATC 59.401 50.000 0.00 0.00 0.00 2.17
156 160 0.537600 TCCCGTTTCGCCCAAAATCA 60.538 50.000 0.00 0.00 0.00 2.57
158 162 1.627879 CCGTTTCGCCCAAAATCATG 58.372 50.000 0.00 0.00 0.00 3.07
165 169 1.081094 GCCCAAAATCATGCAAGTGC 58.919 50.000 0.00 0.00 42.50 4.40
198 202 8.081208 ACAGATTAATATTGAGATCAAGCACG 57.919 34.615 0.00 0.00 39.47 5.34
200 204 5.673337 TTAATATTGAGATCAAGCACGGC 57.327 39.130 0.00 0.00 39.47 5.68
203 207 2.815211 GAGATCAAGCACGGCGCA 60.815 61.111 10.83 0.00 46.13 6.09
248 252 3.629087 AGAAGATCAATCCCCAAAGCAG 58.371 45.455 0.00 0.00 0.00 4.24
249 253 3.011032 AGAAGATCAATCCCCAAAGCAGT 59.989 43.478 0.00 0.00 0.00 4.40
268 272 4.765339 GCAGTGACCCAGGTTATTTTTAGT 59.235 41.667 0.00 0.00 0.00 2.24
274 278 4.709886 ACCCAGGTTATTTTTAGTGGATGC 59.290 41.667 0.00 0.00 0.00 3.91
283 287 9.860898 GTTATTTTTAGTGGATGCATCTTCTTT 57.139 29.630 25.28 10.07 0.00 2.52
286 290 9.860898 ATTTTTAGTGGATGCATCTTCTTTAAC 57.139 29.630 25.28 12.26 0.00 2.01
299 303 7.309194 GCATCTTCTTTAACCTTCCTTGCTTAA 60.309 37.037 0.00 0.00 0.00 1.85
300 304 7.745620 TCTTCTTTAACCTTCCTTGCTTAAG 57.254 36.000 0.00 0.00 0.00 1.85
301 305 6.715264 TCTTCTTTAACCTTCCTTGCTTAAGG 59.285 38.462 4.29 0.00 46.44 2.69
302 306 6.195600 TCTTTAACCTTCCTTGCTTAAGGA 57.804 37.500 4.29 4.72 46.67 3.36
309 313 1.279271 TCCTTGCTTAAGGAGGAGTGC 59.721 52.381 7.72 0.00 43.68 4.40
310 314 1.003580 CCTTGCTTAAGGAGGAGTGCA 59.996 52.381 7.72 0.00 42.62 4.57
311 315 2.356535 CCTTGCTTAAGGAGGAGTGCAT 60.357 50.000 7.72 0.00 42.62 3.96
312 316 2.408271 TGCTTAAGGAGGAGTGCATG 57.592 50.000 4.29 0.00 0.00 4.06
313 317 1.065199 TGCTTAAGGAGGAGTGCATGG 60.065 52.381 4.29 0.00 0.00 3.66
314 318 1.065126 GCTTAAGGAGGAGTGCATGGT 60.065 52.381 4.29 0.00 0.00 3.55
315 319 2.911484 CTTAAGGAGGAGTGCATGGTC 58.089 52.381 0.00 0.00 0.00 4.02
316 320 1.204146 TAAGGAGGAGTGCATGGTCC 58.796 55.000 4.87 4.87 0.00 4.46
317 321 1.566298 AAGGAGGAGTGCATGGTCCC 61.566 60.000 8.66 0.14 32.70 4.46
318 322 1.997874 GGAGGAGTGCATGGTCCCT 60.998 63.158 8.66 2.75 32.70 4.20
319 323 1.524482 GAGGAGTGCATGGTCCCTC 59.476 63.158 8.66 7.74 36.94 4.30
320 324 2.187946 GGAGTGCATGGTCCCTCG 59.812 66.667 0.00 0.00 0.00 4.63
321 325 2.512515 GAGTGCATGGTCCCTCGC 60.513 66.667 0.00 0.00 0.00 5.03
322 326 3.315142 GAGTGCATGGTCCCTCGCA 62.315 63.158 0.00 0.00 0.00 5.10
323 327 2.359850 GTGCATGGTCCCTCGCAA 60.360 61.111 0.00 0.00 35.87 4.85
324 328 1.971167 GTGCATGGTCCCTCGCAAA 60.971 57.895 0.00 0.00 35.87 3.68
325 329 1.228398 TGCATGGTCCCTCGCAAAA 60.228 52.632 0.00 0.00 0.00 2.44
326 330 0.825425 TGCATGGTCCCTCGCAAAAA 60.825 50.000 0.00 0.00 0.00 1.94
404 428 1.446907 GTTGCACTGGTCATCTCAGG 58.553 55.000 0.00 0.00 36.62 3.86
405 429 1.059098 TTGCACTGGTCATCTCAGGT 58.941 50.000 0.00 0.00 36.62 4.00
464 488 4.900054 AGTTGTTACTACACTTCCTCCAGT 59.100 41.667 0.00 0.00 32.98 4.00
470 494 4.337145 ACTACACTTCCTCCAGTGAGTAG 58.663 47.826 7.82 0.00 46.29 2.57
478 502 4.590918 TCCTCCAGTGAGTAGTAGTCAAG 58.409 47.826 9.30 5.64 36.86 3.02
481 505 3.759086 TCCAGTGAGTAGTAGTCAAGCAG 59.241 47.826 9.30 0.23 0.00 4.24
522 546 3.965379 TTCTTGGGCGTGTGATACTTA 57.035 42.857 0.00 0.00 0.00 2.24
555 579 7.387119 AGGAGTTTGTTAAAAGAAGTTTCGT 57.613 32.000 0.00 0.00 0.00 3.85
557 581 7.753580 AGGAGTTTGTTAAAAGAAGTTTCGTTG 59.246 33.333 0.00 0.00 0.00 4.10
558 582 7.008901 GGAGTTTGTTAAAAGAAGTTTCGTTGG 59.991 37.037 0.00 0.00 0.00 3.77
559 583 7.372714 AGTTTGTTAAAAGAAGTTTCGTTGGT 58.627 30.769 0.00 0.00 0.00 3.67
560 584 7.868922 AGTTTGTTAAAAGAAGTTTCGTTGGTT 59.131 29.630 0.00 0.00 0.00 3.67
562 586 5.573669 TGTTAAAAGAAGTTTCGTTGGTTGC 59.426 36.000 0.00 0.00 0.00 4.17
563 587 3.859411 AAAGAAGTTTCGTTGGTTGCA 57.141 38.095 0.00 0.00 0.00 4.08
565 589 3.626028 AGAAGTTTCGTTGGTTGCATC 57.374 42.857 0.00 0.00 0.00 3.91
566 590 2.948979 AGAAGTTTCGTTGGTTGCATCA 59.051 40.909 0.00 0.00 0.00 3.07
567 591 2.774439 AGTTTCGTTGGTTGCATCAC 57.226 45.000 0.00 0.00 0.00 3.06
568 592 1.336755 AGTTTCGTTGGTTGCATCACC 59.663 47.619 0.21 0.21 37.34 4.02
570 594 1.511318 TTCGTTGGTTGCATCACCCG 61.511 55.000 5.11 2.92 35.73 5.28
600 662 1.897802 GAAAGGTCGGAACTCCACCTA 59.102 52.381 15.82 0.00 42.61 3.08
601 663 2.249309 AAGGTCGGAACTCCACCTAT 57.751 50.000 15.82 7.64 42.61 2.57
626 692 0.393402 TCCTTGCCGTAGAGCTCGTA 60.393 55.000 8.37 0.00 0.00 3.43
635 701 2.223502 CGTAGAGCTCGTATCTTTGGCA 60.224 50.000 8.37 0.00 0.00 4.92
659 733 1.952102 GACGCCAGGAATCCACCGTA 61.952 60.000 10.82 0.00 34.73 4.02
660 734 1.335132 ACGCCAGGAATCCACCGTAT 61.335 55.000 0.61 0.00 34.73 3.06
693 767 2.590092 GGATTCGTGTGGAGGGGG 59.410 66.667 0.00 0.00 0.00 5.40
716 790 0.253044 TTCTGCGGGAATGAAGAGGG 59.747 55.000 0.00 0.00 0.00 4.30
779 856 6.829298 TGATCGAACTATCTTACTCAGGTTCT 59.171 38.462 0.00 0.00 33.28 3.01
780 857 6.680874 TCGAACTATCTTACTCAGGTTCTC 57.319 41.667 0.00 0.00 33.28 2.87
781 858 6.416415 TCGAACTATCTTACTCAGGTTCTCT 58.584 40.000 0.00 0.00 33.28 3.10
782 859 6.885376 TCGAACTATCTTACTCAGGTTCTCTT 59.115 38.462 0.00 0.00 33.28 2.85
822 941 3.194861 CAGTTCGTTGTGAAGAGGTGAA 58.805 45.455 0.00 0.00 37.23 3.18
827 946 6.540914 AGTTCGTTGTGAAGAGGTGAAAATTA 59.459 34.615 0.00 0.00 37.23 1.40
829 948 6.898041 TCGTTGTGAAGAGGTGAAAATTATG 58.102 36.000 0.00 0.00 0.00 1.90
830 949 6.708502 TCGTTGTGAAGAGGTGAAAATTATGA 59.291 34.615 0.00 0.00 0.00 2.15
831 950 6.797033 CGTTGTGAAGAGGTGAAAATTATGAC 59.203 38.462 0.00 0.00 0.00 3.06
835 954 7.502226 TGTGAAGAGGTGAAAATTATGACTTGT 59.498 33.333 0.00 0.00 0.00 3.16
836 955 8.352942 GTGAAGAGGTGAAAATTATGACTTGTT 58.647 33.333 0.00 0.00 0.00 2.83
903 1026 7.657336 AGTTGATCAATTAACAATTTCCACGT 58.343 30.769 12.12 0.00 0.00 4.49
907 1030 4.985409 TCAATTAACAATTTCCACGTTGCC 59.015 37.500 0.00 0.00 0.00 4.52
1104 1227 0.246635 ACGGTGAGAATGAACTCCCG 59.753 55.000 17.15 17.15 46.08 5.14
1105 1228 0.246635 CGGTGAGAATGAACTCCCGT 59.753 55.000 0.00 0.00 41.30 5.28
1106 1229 1.337823 CGGTGAGAATGAACTCCCGTT 60.338 52.381 0.00 0.00 41.30 4.44
1124 1253 2.481568 CGTTCGAGTATATGGCTCCGTA 59.518 50.000 4.28 0.00 0.00 4.02
1143 1272 1.999648 ATTGTCCATTGCCACACTGT 58.000 45.000 0.00 0.00 0.00 3.55
1152 1281 4.370049 CATTGCCACACTGTTCAATTTGA 58.630 39.130 0.00 0.00 0.00 2.69
1154 1283 4.669206 TGCCACACTGTTCAATTTGAAT 57.331 36.364 14.54 0.00 38.79 2.57
1156 1285 4.141981 TGCCACACTGTTCAATTTGAATGT 60.142 37.500 14.54 11.93 38.79 2.71
1163 1292 6.690957 CACTGTTCAATTTGAATGTACGTGTT 59.309 34.615 14.54 0.00 38.79 3.32
1226 1355 2.058595 GGCCGACCTGAAGCTCCTA 61.059 63.158 0.00 0.00 0.00 2.94
1520 1649 1.447838 CGTGTACCTCGGCTGCATT 60.448 57.895 0.50 0.00 0.00 3.56
1523 1652 0.613260 TGTACCTCGGCTGCATTCTT 59.387 50.000 0.50 0.00 0.00 2.52
1526 1655 2.768492 CCTCGGCTGCATTCTTGGC 61.768 63.158 0.50 0.00 0.00 4.52
1551 1680 1.608717 CTGCTACTCCACGGGCTTCT 61.609 60.000 0.00 0.00 0.00 2.85
1552 1681 1.142097 GCTACTCCACGGGCTTCTC 59.858 63.158 0.00 0.00 0.00 2.87
1712 1841 3.366629 GTGCTCTCCAGGACGTCA 58.633 61.111 18.91 0.00 30.37 4.35
1799 1931 1.215382 CATCGAAGAGACGGTGGCA 59.785 57.895 0.00 0.00 43.63 4.92
1924 2056 3.479269 CAAGGTCTTCGCGTCCGC 61.479 66.667 5.77 0.68 37.85 5.54
2205 2337 3.647649 CTGTCCGCGACCATGCTGA 62.648 63.158 8.23 0.00 0.00 4.26
2326 2461 2.034066 CATGGTGGACAGGGCGTT 59.966 61.111 0.00 0.00 0.00 4.84
2399 2534 3.314388 GAGCTTGCTCGTTTGCCCG 62.314 63.158 6.88 0.00 0.00 6.13
2426 2561 1.564622 CGTGCTCGTGTGGTTCTTG 59.435 57.895 0.00 0.00 0.00 3.02
2444 2579 0.380378 TGTTTTGTGCGTGCCTTCTC 59.620 50.000 0.00 0.00 0.00 2.87
2497 2632 3.368843 CACGTACGGTCTTTCCCAATAAC 59.631 47.826 21.06 0.00 0.00 1.89
2528 2663 1.135333 GCTAGTCTAGCGAGCTTGGTT 59.865 52.381 15.95 0.00 42.62 3.67
2648 2784 3.519930 GACGAGGACCGGAGAGCC 61.520 72.222 9.46 3.58 43.93 4.70
2684 2827 3.071459 CTCGTGGATGTTCGTGCGC 62.071 63.158 0.00 0.00 0.00 6.09
2699 2842 2.726373 CGTGCGCGAATGGAAAATGTTA 60.726 45.455 16.08 0.00 41.33 2.41
2700 2843 2.592459 GTGCGCGAATGGAAAATGTTAC 59.408 45.455 12.10 0.00 0.00 2.50
2701 2844 2.486203 TGCGCGAATGGAAAATGTTACT 59.514 40.909 12.10 0.00 0.00 2.24
2702 2845 3.685272 TGCGCGAATGGAAAATGTTACTA 59.315 39.130 12.10 0.00 0.00 1.82
2703 2846 4.201773 TGCGCGAATGGAAAATGTTACTAG 60.202 41.667 12.10 0.00 0.00 2.57
2704 2847 4.201783 GCGCGAATGGAAAATGTTACTAGT 60.202 41.667 12.10 0.00 0.00 2.57
2733 2876 2.249844 AACACAAAGTTCCGATCGGT 57.750 45.000 32.15 12.21 34.74 4.69
2734 2877 1.792006 ACACAAAGTTCCGATCGGTC 58.208 50.000 32.15 24.61 36.47 4.79
2735 2878 3.431292 AACACAAAGTTCCGATCGGTCG 61.431 50.000 32.15 12.09 39.21 4.79
2736 2879 0.316204 ACAAAGTTCCGATCGGTCGT 59.684 50.000 32.15 20.92 46.25 4.34
2737 2880 1.269936 ACAAAGTTCCGATCGGTCGTT 60.270 47.619 32.15 24.64 46.25 3.85
2738 2881 2.030007 ACAAAGTTCCGATCGGTCGTTA 60.030 45.455 32.15 11.40 46.25 3.18
2739 2882 2.988493 CAAAGTTCCGATCGGTCGTTAA 59.012 45.455 32.15 16.97 46.25 2.01
2740 2883 2.268730 AGTTCCGATCGGTCGTTAAC 57.731 50.000 32.15 26.31 46.25 2.01
2741 2884 1.815003 AGTTCCGATCGGTCGTTAACT 59.185 47.619 32.15 27.91 46.25 2.24
2742 2885 2.159462 AGTTCCGATCGGTCGTTAACTC 60.159 50.000 32.15 9.17 43.08 3.01
2743 2886 0.374758 TCCGATCGGTCGTTAACTCG 59.625 55.000 32.15 4.97 46.25 4.18
2744 2887 0.097674 CCGATCGGTCGTTAACTCGT 59.902 55.000 26.35 0.00 46.25 4.18
2745 2888 1.466360 CCGATCGGTCGTTAACTCGTT 60.466 52.381 26.35 0.82 46.25 3.85
2746 2889 2.223021 CCGATCGGTCGTTAACTCGTTA 60.223 50.000 26.35 0.00 46.25 3.18
2747 2890 3.546815 CCGATCGGTCGTTAACTCGTTAT 60.547 47.826 26.35 0.00 46.25 1.89
2748 2891 3.656719 CGATCGGTCGTTAACTCGTTATC 59.343 47.826 10.62 4.82 42.78 1.75
2749 2892 3.038352 TCGGTCGTTAACTCGTTATCG 57.962 47.619 3.71 11.88 38.73 2.92
2750 2893 1.510338 CGGTCGTTAACTCGTTATCGC 59.490 52.381 12.83 9.28 37.85 4.58
2751 2894 1.510338 GGTCGTTAACTCGTTATCGCG 59.490 52.381 0.00 0.00 37.85 5.87
2752 2895 2.169179 GTCGTTAACTCGTTATCGCGT 58.831 47.619 5.77 0.00 37.85 6.01
2753 2896 3.342269 GTCGTTAACTCGTTATCGCGTA 58.658 45.455 5.77 0.00 37.85 4.42
2754 2897 3.173985 GTCGTTAACTCGTTATCGCGTAC 59.826 47.826 5.77 2.16 37.85 3.67
2755 2898 3.062099 TCGTTAACTCGTTATCGCGTACT 59.938 43.478 5.77 0.00 37.85 2.73
2756 2899 3.412504 CGTTAACTCGTTATCGCGTACTC 59.587 47.826 5.77 0.00 33.82 2.59
2757 2900 2.465210 AACTCGTTATCGCGTACTCC 57.535 50.000 5.77 0.00 33.82 3.85
2758 2901 0.659957 ACTCGTTATCGCGTACTCCC 59.340 55.000 5.77 0.00 33.17 4.30
2759 2902 0.942962 CTCGTTATCGCGTACTCCCT 59.057 55.000 5.77 0.00 36.96 4.20
2760 2903 0.940126 TCGTTATCGCGTACTCCCTC 59.060 55.000 5.77 0.00 36.96 4.30
2761 2904 0.040603 CGTTATCGCGTACTCCCTCC 60.041 60.000 5.77 0.00 0.00 4.30
2762 2905 1.027357 GTTATCGCGTACTCCCTCCA 58.973 55.000 5.77 0.00 0.00 3.86
2763 2906 1.612463 GTTATCGCGTACTCCCTCCAT 59.388 52.381 5.77 0.00 0.00 3.41
2764 2907 1.531423 TATCGCGTACTCCCTCCATC 58.469 55.000 5.77 0.00 0.00 3.51
2765 2908 1.179814 ATCGCGTACTCCCTCCATCC 61.180 60.000 5.77 0.00 0.00 3.51
2766 2909 2.728817 GCGTACTCCCTCCATCCG 59.271 66.667 0.00 0.00 0.00 4.18
2767 2910 2.857744 GCGTACTCCCTCCATCCGG 61.858 68.421 0.00 0.00 0.00 5.14
2768 2911 1.455217 CGTACTCCCTCCATCCGGT 60.455 63.158 0.00 0.00 0.00 5.28
2769 2912 1.735376 CGTACTCCCTCCATCCGGTG 61.735 65.000 0.00 0.00 0.00 4.94
2770 2913 0.396695 GTACTCCCTCCATCCGGTGA 60.397 60.000 0.00 0.00 0.00 4.02
2771 2914 0.337082 TACTCCCTCCATCCGGTGAA 59.663 55.000 0.00 0.00 0.00 3.18
2772 2915 0.978146 ACTCCCTCCATCCGGTGAAG 60.978 60.000 0.00 0.00 0.00 3.02
2773 2916 0.687757 CTCCCTCCATCCGGTGAAGA 60.688 60.000 0.00 0.00 0.00 2.87
2774 2917 0.687757 TCCCTCCATCCGGTGAAGAG 60.688 60.000 0.00 3.95 0.00 2.85
2775 2918 1.144936 CCTCCATCCGGTGAAGAGC 59.855 63.158 0.00 0.00 0.00 4.09
2776 2919 1.227089 CTCCATCCGGTGAAGAGCG 60.227 63.158 0.00 0.00 42.85 5.03
2777 2920 2.892425 CCATCCGGTGAAGAGCGC 60.892 66.667 0.00 0.00 41.86 5.92
2778 2921 2.125552 CATCCGGTGAAGAGCGCA 60.126 61.111 11.47 0.00 41.86 6.09
2779 2922 1.522355 CATCCGGTGAAGAGCGCAT 60.522 57.895 11.47 0.00 41.86 4.73
2780 2923 1.522355 ATCCGGTGAAGAGCGCATG 60.522 57.895 11.47 0.00 41.86 4.06
2781 2924 2.244117 ATCCGGTGAAGAGCGCATGT 62.244 55.000 11.47 0.00 41.86 3.21
2782 2925 2.034879 CCGGTGAAGAGCGCATGTT 61.035 57.895 11.47 0.00 41.86 2.71
2783 2926 1.577328 CCGGTGAAGAGCGCATGTTT 61.577 55.000 11.47 0.00 41.86 2.83
2784 2927 0.453282 CGGTGAAGAGCGCATGTTTG 60.453 55.000 11.47 0.00 36.08 2.93
2785 2928 0.874390 GGTGAAGAGCGCATGTTTGA 59.126 50.000 11.47 0.00 0.00 2.69
2786 2929 1.470098 GGTGAAGAGCGCATGTTTGAT 59.530 47.619 11.47 0.00 0.00 2.57
2787 2930 2.095059 GGTGAAGAGCGCATGTTTGATT 60.095 45.455 11.47 0.00 0.00 2.57
2788 2931 3.568538 GTGAAGAGCGCATGTTTGATTT 58.431 40.909 11.47 0.00 0.00 2.17
2789 2932 4.379394 GGTGAAGAGCGCATGTTTGATTTA 60.379 41.667 11.47 0.00 0.00 1.40
2790 2933 5.153513 GTGAAGAGCGCATGTTTGATTTAA 58.846 37.500 11.47 0.00 0.00 1.52
2791 2934 5.629020 GTGAAGAGCGCATGTTTGATTTAAA 59.371 36.000 11.47 0.00 0.00 1.52
2792 2935 6.143758 GTGAAGAGCGCATGTTTGATTTAAAA 59.856 34.615 11.47 0.00 0.00 1.52
2793 2936 6.867816 TGAAGAGCGCATGTTTGATTTAAAAT 59.132 30.769 11.47 0.00 0.00 1.82
2794 2937 7.384660 TGAAGAGCGCATGTTTGATTTAAAATT 59.615 29.630 11.47 0.00 0.00 1.82
2795 2938 7.656707 AGAGCGCATGTTTGATTTAAAATTT 57.343 28.000 11.47 0.00 0.00 1.82
2796 2939 7.512297 AGAGCGCATGTTTGATTTAAAATTTG 58.488 30.769 11.47 0.00 0.00 2.32
2797 2940 7.171337 AGAGCGCATGTTTGATTTAAAATTTGT 59.829 29.630 11.47 0.00 0.00 2.83
2798 2941 7.638134 AGCGCATGTTTGATTTAAAATTTGTT 58.362 26.923 11.47 0.00 0.00 2.83
2799 2942 7.798052 AGCGCATGTTTGATTTAAAATTTGTTC 59.202 29.630 11.47 0.00 0.00 3.18
2800 2943 7.585573 GCGCATGTTTGATTTAAAATTTGTTCA 59.414 29.630 0.30 0.00 0.00 3.18
2801 2944 8.881231 CGCATGTTTGATTTAAAATTTGTTCAC 58.119 29.630 0.00 0.00 0.00 3.18
2802 2945 9.713740 GCATGTTTGATTTAAAATTTGTTCACA 57.286 25.926 0.00 0.00 0.00 3.58
2840 2983 9.487790 ACAAATGGTCACCTTAATTTTTACATG 57.512 29.630 0.00 0.00 0.00 3.21
2841 2984 9.487790 CAAATGGTCACCTTAATTTTTACATGT 57.512 29.630 2.69 2.69 0.00 3.21
2844 2987 8.927675 TGGTCACCTTAATTTTTACATGTACT 57.072 30.769 4.68 0.00 0.00 2.73
2845 2988 9.357161 TGGTCACCTTAATTTTTACATGTACTT 57.643 29.630 4.68 0.24 0.00 2.24
2855 2998 8.746922 ATTTTTACATGTACTTAACTCGTCGA 57.253 30.769 4.68 0.00 0.00 4.20
2856 2999 8.572828 TTTTTACATGTACTTAACTCGTCGAA 57.427 30.769 4.68 0.00 0.00 3.71
2857 3000 7.786305 TTTACATGTACTTAACTCGTCGAAG 57.214 36.000 4.68 0.00 0.00 3.79
2858 3001 4.730657 ACATGTACTTAACTCGTCGAAGG 58.269 43.478 0.00 0.00 0.00 3.46
2859 3002 4.217118 ACATGTACTTAACTCGTCGAAGGT 59.783 41.667 0.00 0.00 0.00 3.50
2860 3003 4.836125 TGTACTTAACTCGTCGAAGGTT 57.164 40.909 0.00 0.60 0.00 3.50
2861 3004 4.539870 TGTACTTAACTCGTCGAAGGTTG 58.460 43.478 9.45 0.00 0.00 3.77
2862 3005 3.022607 ACTTAACTCGTCGAAGGTTGG 57.977 47.619 9.45 5.74 0.00 3.77
2863 3006 2.624838 ACTTAACTCGTCGAAGGTTGGA 59.375 45.455 9.45 0.00 0.00 3.53
2864 3007 3.257624 ACTTAACTCGTCGAAGGTTGGAT 59.742 43.478 9.45 0.00 0.00 3.41
2865 3008 4.460382 ACTTAACTCGTCGAAGGTTGGATA 59.540 41.667 9.45 0.00 0.00 2.59
2866 3009 3.947910 AACTCGTCGAAGGTTGGATAA 57.052 42.857 0.00 0.00 0.00 1.75
2867 3010 4.467198 AACTCGTCGAAGGTTGGATAAT 57.533 40.909 0.00 0.00 0.00 1.28
2868 3011 4.467198 ACTCGTCGAAGGTTGGATAATT 57.533 40.909 0.00 0.00 0.00 1.40
2869 3012 5.587388 ACTCGTCGAAGGTTGGATAATTA 57.413 39.130 0.00 0.00 0.00 1.40
2870 3013 5.969423 ACTCGTCGAAGGTTGGATAATTAA 58.031 37.500 0.00 0.00 0.00 1.40
2871 3014 6.400568 ACTCGTCGAAGGTTGGATAATTAAA 58.599 36.000 0.00 0.00 0.00 1.52
2872 3015 6.875195 ACTCGTCGAAGGTTGGATAATTAAAA 59.125 34.615 0.00 0.00 0.00 1.52
2873 3016 7.388500 ACTCGTCGAAGGTTGGATAATTAAAAA 59.612 33.333 0.00 0.00 0.00 1.94
2874 3017 7.745015 TCGTCGAAGGTTGGATAATTAAAAAG 58.255 34.615 0.00 0.00 0.00 2.27
2875 3018 6.964934 CGTCGAAGGTTGGATAATTAAAAAGG 59.035 38.462 0.00 0.00 0.00 3.11
2876 3019 7.255569 GTCGAAGGTTGGATAATTAAAAAGGG 58.744 38.462 0.00 0.00 0.00 3.95
2877 3020 6.378848 TCGAAGGTTGGATAATTAAAAAGGGG 59.621 38.462 0.00 0.00 0.00 4.79
2878 3021 6.378848 CGAAGGTTGGATAATTAAAAAGGGGA 59.621 38.462 0.00 0.00 0.00 4.81
2879 3022 7.416326 CGAAGGTTGGATAATTAAAAAGGGGAG 60.416 40.741 0.00 0.00 0.00 4.30
2880 3023 7.051696 AGGTTGGATAATTAAAAAGGGGAGA 57.948 36.000 0.00 0.00 0.00 3.71
2881 3024 7.126061 AGGTTGGATAATTAAAAAGGGGAGAG 58.874 38.462 0.00 0.00 0.00 3.20
2882 3025 7.036132 AGGTTGGATAATTAAAAAGGGGAGAGA 60.036 37.037 0.00 0.00 0.00 3.10
2883 3026 7.785028 GGTTGGATAATTAAAAAGGGGAGAGAT 59.215 37.037 0.00 0.00 0.00 2.75
2884 3027 8.633561 GTTGGATAATTAAAAAGGGGAGAGATG 58.366 37.037 0.00 0.00 0.00 2.90
2885 3028 8.113114 TGGATAATTAAAAAGGGGAGAGATGA 57.887 34.615 0.00 0.00 0.00 2.92
2886 3029 8.736675 TGGATAATTAAAAAGGGGAGAGATGAT 58.263 33.333 0.00 0.00 0.00 2.45
2887 3030 9.018582 GGATAATTAAAAAGGGGAGAGATGATG 57.981 37.037 0.00 0.00 0.00 3.07
2888 3031 8.946797 ATAATTAAAAAGGGGAGAGATGATGG 57.053 34.615 0.00 0.00 0.00 3.51
2889 3032 5.796502 TTAAAAAGGGGAGAGATGATGGT 57.203 39.130 0.00 0.00 0.00 3.55
2890 3033 4.682021 AAAAAGGGGAGAGATGATGGTT 57.318 40.909 0.00 0.00 0.00 3.67
2891 3034 4.682021 AAAAGGGGAGAGATGATGGTTT 57.318 40.909 0.00 0.00 0.00 3.27
2892 3035 3.659183 AAGGGGAGAGATGATGGTTTG 57.341 47.619 0.00 0.00 0.00 2.93
2893 3036 1.213926 AGGGGAGAGATGATGGTTTGC 59.786 52.381 0.00 0.00 0.00 3.68
2894 3037 1.064463 GGGGAGAGATGATGGTTTGCA 60.064 52.381 0.00 0.00 0.00 4.08
2895 3038 2.019984 GGGAGAGATGATGGTTTGCAC 58.980 52.381 0.00 0.00 0.00 4.57
2896 3039 2.356535 GGGAGAGATGATGGTTTGCACT 60.357 50.000 0.00 0.00 0.00 4.40
2897 3040 3.118261 GGGAGAGATGATGGTTTGCACTA 60.118 47.826 0.00 0.00 0.00 2.74
2898 3041 3.873952 GGAGAGATGATGGTTTGCACTAC 59.126 47.826 0.00 0.00 0.00 2.73
2899 3042 4.383552 GGAGAGATGATGGTTTGCACTACT 60.384 45.833 0.00 0.00 0.00 2.57
2900 3043 5.171339 AGAGATGATGGTTTGCACTACTT 57.829 39.130 0.00 0.00 0.00 2.24
2901 3044 4.940046 AGAGATGATGGTTTGCACTACTTG 59.060 41.667 0.00 0.00 0.00 3.16
2902 3045 4.655963 AGATGATGGTTTGCACTACTTGT 58.344 39.130 0.00 0.00 0.00 3.16
2903 3046 5.072741 AGATGATGGTTTGCACTACTTGTT 58.927 37.500 0.00 0.00 0.00 2.83
2904 3047 6.237901 AGATGATGGTTTGCACTACTTGTTA 58.762 36.000 0.00 0.00 0.00 2.41
2905 3048 6.886459 AGATGATGGTTTGCACTACTTGTTAT 59.114 34.615 0.00 0.00 0.00 1.89
2906 3049 6.252967 TGATGGTTTGCACTACTTGTTATG 57.747 37.500 0.00 0.00 0.00 1.90
2907 3050 4.497473 TGGTTTGCACTACTTGTTATGC 57.503 40.909 0.00 0.00 38.59 3.14
2908 3051 3.885901 TGGTTTGCACTACTTGTTATGCA 59.114 39.130 7.30 7.30 45.94 3.96
2909 3052 4.522405 TGGTTTGCACTACTTGTTATGCAT 59.478 37.500 3.79 3.79 46.75 3.96
2951 3094 9.841295 TTCTTTAAGTCAACTACAGGTAATTGT 57.159 29.630 1.23 0.00 35.09 2.71
2953 3096 8.967664 TTTAAGTCAACTACAGGTAATTGTGT 57.032 30.769 1.23 0.00 32.56 3.72
2955 3098 4.755123 AGTCAACTACAGGTAATTGTGTGC 59.245 41.667 1.23 0.00 32.56 4.57
2957 3100 2.073816 ACTACAGGTAATTGTGTGCGC 58.926 47.619 0.00 0.00 32.56 6.09
2965 3108 0.385473 AATTGTGTGCGCGTTGCTAC 60.385 50.000 8.43 0.96 46.63 3.58
2977 3120 3.817148 CGTTGCTACGGGTGTAAAAAT 57.183 42.857 13.04 0.00 43.94 1.82
2978 3121 3.484683 CGTTGCTACGGGTGTAAAAATG 58.515 45.455 13.04 0.00 43.94 2.32
2979 3122 3.058777 CGTTGCTACGGGTGTAAAAATGT 60.059 43.478 13.04 0.00 43.94 2.71
2980 3123 4.152045 CGTTGCTACGGGTGTAAAAATGTA 59.848 41.667 13.04 0.00 43.94 2.29
2981 3124 5.333952 CGTTGCTACGGGTGTAAAAATGTAA 60.334 40.000 13.04 0.00 43.94 2.41
2982 3125 6.437094 GTTGCTACGGGTGTAAAAATGTAAA 58.563 36.000 0.00 0.00 0.00 2.01
2983 3126 6.630444 TGCTACGGGTGTAAAAATGTAAAA 57.370 33.333 0.00 0.00 0.00 1.52
3029 3172 7.391148 TGAACTAATAGGAAAATTGCTGGTC 57.609 36.000 0.00 0.00 0.00 4.02
3033 3177 4.701956 ATAGGAAAATTGCTGGTCGTTG 57.298 40.909 0.00 0.00 0.00 4.10
3123 3268 8.528917 AAAATTATTTGCGTTTTTACCTCCTC 57.471 30.769 0.00 0.00 0.00 3.71
3124 3269 6.827586 ATTATTTGCGTTTTTACCTCCTCA 57.172 33.333 0.00 0.00 0.00 3.86
3127 3272 2.706890 TGCGTTTTTACCTCCTCATCC 58.293 47.619 0.00 0.00 0.00 3.51
3152 3297 2.654863 CAGGTTGACACCCTTCTTGTT 58.345 47.619 0.00 0.00 45.63 2.83
3168 3313 3.493129 TCTTGTTCTGCATCACGTACAAC 59.507 43.478 0.00 0.00 0.00 3.32
3171 3316 2.647529 TCTGCATCACGTACAACGAT 57.352 45.000 6.44 0.00 46.05 3.73
3175 3320 4.035278 TGCATCACGTACAACGATATGA 57.965 40.909 16.82 7.86 46.05 2.15
3178 3323 4.085568 GCATCACGTACAACGATATGACAG 60.086 45.833 16.82 6.03 46.05 3.51
3206 3351 2.245159 TCATTGCCTAAGATCCTGCG 57.755 50.000 0.00 0.00 0.00 5.18
3212 3357 0.676736 CCTAAGATCCTGCGAGGGAC 59.323 60.000 0.00 0.00 38.30 4.46
3233 3378 2.614057 CACACCTCAGGAGTTGAAACAC 59.386 50.000 0.00 0.00 34.81 3.32
3239 3385 3.541632 TCAGGAGTTGAAACACACCTTC 58.458 45.455 0.00 0.00 31.34 3.46
3298 3445 6.499234 TCAACCTCAATGAACATGTACATG 57.501 37.500 29.97 29.97 44.15 3.21
3314 3461 8.131455 CATGTACATGTGCCTAAGTTTAGTAG 57.869 38.462 24.91 0.00 34.23 2.57
3315 3462 7.235935 TGTACATGTGCCTAAGTTTAGTAGT 57.764 36.000 9.11 0.00 0.00 2.73
3316 3463 8.352137 TGTACATGTGCCTAAGTTTAGTAGTA 57.648 34.615 9.11 0.00 0.00 1.82
3318 3465 9.813446 GTACATGTGCCTAAGTTTAGTAGTAAT 57.187 33.333 9.11 0.00 0.00 1.89
3319 3466 8.718102 ACATGTGCCTAAGTTTAGTAGTAATG 57.282 34.615 0.00 0.00 0.00 1.90
3350 3502 3.742369 CCAAATTGAACCATGCAAGTCAC 59.258 43.478 0.00 0.00 0.00 3.67
3359 3511 3.018856 CCATGCAAGTCACACACCATAT 58.981 45.455 0.00 0.00 0.00 1.78
3365 3517 6.410540 TGCAAGTCACACACCATATATAACA 58.589 36.000 0.00 0.00 0.00 2.41
3366 3518 6.881602 TGCAAGTCACACACCATATATAACAA 59.118 34.615 0.00 0.00 0.00 2.83
3397 3549 6.721571 TCTAAGCGCATATAGCAAATTACC 57.278 37.500 11.47 0.00 46.13 2.85
3449 3610 9.722056 AAAATCACGAAGATGCAAACTATTATC 57.278 29.630 0.00 0.00 36.96 1.75
3450 3611 8.668510 AATCACGAAGATGCAAACTATTATCT 57.331 30.769 0.00 0.00 36.96 1.98
3451 3612 9.764363 AATCACGAAGATGCAAACTATTATCTA 57.236 29.630 0.00 0.00 36.96 1.98
3452 3613 8.575565 TCACGAAGATGCAAACTATTATCTAC 57.424 34.615 0.00 0.00 30.19 2.59
3528 3692 3.181476 GGTGAACACAACAGCTGGAAAAT 60.181 43.478 19.93 0.00 33.71 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.023962 ACCAAACACATTCAAATCATATACAGT 57.976 29.630 0.00 0.00 0.00 3.55
36 37 9.859427 AACCAAACACATTCAAATCATATACAG 57.141 29.630 0.00 0.00 0.00 2.74
37 38 9.636879 CAACCAAACACATTCAAATCATATACA 57.363 29.630 0.00 0.00 0.00 2.29
38 39 9.086336 CCAACCAAACACATTCAAATCATATAC 57.914 33.333 0.00 0.00 0.00 1.47
42 43 5.927819 ACCAACCAAACACATTCAAATCAT 58.072 33.333 0.00 0.00 0.00 2.45
54 55 7.567458 ACTAGTAAGAGTAAACCAACCAAACA 58.433 34.615 0.00 0.00 0.00 2.83
78 79 7.426410 TGTAGATTCCGAGTCAGAATATTGAC 58.574 38.462 1.48 0.00 46.14 3.18
79 80 7.582667 TGTAGATTCCGAGTCAGAATATTGA 57.417 36.000 1.48 0.00 34.12 2.57
84 88 4.100189 CCCTTGTAGATTCCGAGTCAGAAT 59.900 45.833 1.05 1.05 36.66 2.40
86 90 3.024547 CCCTTGTAGATTCCGAGTCAGA 58.975 50.000 0.00 0.00 0.00 3.27
95 99 2.040412 CCCTATGGCCCCTTGTAGATTC 59.960 54.545 0.00 0.00 0.00 2.52
96 100 2.065799 CCCTATGGCCCCTTGTAGATT 58.934 52.381 0.00 0.00 0.00 2.40
118 122 2.427506 GAACTAGTGCCCAAGGACAAG 58.572 52.381 0.00 0.00 0.00 3.16
119 123 1.073284 GGAACTAGTGCCCAAGGACAA 59.927 52.381 9.02 0.00 0.00 3.18
125 129 0.475044 AAACGGGAACTAGTGCCCAA 59.525 50.000 34.45 0.00 44.94 4.12
127 131 1.017701 CGAAACGGGAACTAGTGCCC 61.018 60.000 27.80 27.80 41.11 5.36
134 138 0.752376 TTTTGGGCGAAACGGGAACT 60.752 50.000 0.00 0.00 0.00 3.01
141 145 2.077413 TGCATGATTTTGGGCGAAAC 57.923 45.000 0.00 0.00 0.00 2.78
158 162 7.678947 ATTAATCTGTATATCCTGCACTTGC 57.321 36.000 0.00 0.00 42.50 4.01
174 178 7.516481 CCGTGCTTGATCTCAATATTAATCTG 58.484 38.462 0.00 0.00 35.02 2.90
203 207 1.561769 TTGACCGGATCCCAGCATGT 61.562 55.000 9.46 0.00 0.00 3.21
208 212 0.613260 TCAAGTTGACCGGATCCCAG 59.387 55.000 9.46 0.00 0.00 4.45
209 213 0.613260 CTCAAGTTGACCGGATCCCA 59.387 55.000 9.46 0.00 0.00 4.37
248 252 5.318630 TCCACTAAAAATAACCTGGGTCAC 58.681 41.667 0.00 0.00 0.00 3.67
249 253 5.586155 TCCACTAAAAATAACCTGGGTCA 57.414 39.130 0.00 0.00 0.00 4.02
268 272 4.949856 GGAAGGTTAAAGAAGATGCATCCA 59.050 41.667 23.06 0.00 0.00 3.41
274 278 6.581171 AAGCAAGGAAGGTTAAAGAAGATG 57.419 37.500 0.00 0.00 0.00 2.90
299 303 1.997874 GGGACCATGCACTCCTCCT 60.998 63.158 6.81 0.00 0.00 3.69
300 304 1.977293 GAGGGACCATGCACTCCTCC 61.977 65.000 9.96 3.12 38.36 4.30
301 305 1.524482 GAGGGACCATGCACTCCTC 59.476 63.158 6.81 6.81 37.45 3.71
302 306 2.362369 CGAGGGACCATGCACTCCT 61.362 63.158 6.81 1.70 0.00 3.69
304 308 2.512515 GCGAGGGACCATGCACTC 60.513 66.667 0.00 0.00 0.00 3.51
305 309 2.410322 TTTGCGAGGGACCATGCACT 62.410 55.000 6.97 0.00 37.01 4.40
306 310 1.523154 TTTTGCGAGGGACCATGCAC 61.523 55.000 6.97 0.00 37.01 4.57
307 311 0.825425 TTTTTGCGAGGGACCATGCA 60.825 50.000 3.78 3.78 35.15 3.96
308 312 1.963679 TTTTTGCGAGGGACCATGC 59.036 52.632 0.00 0.00 0.00 4.06
351 355 9.262358 GGTCAGGACAGTATCTGTAAATAATTC 57.738 37.037 2.29 0.00 45.44 2.17
362 366 0.335361 ACCGGGTCAGGACAGTATCT 59.665 55.000 6.32 0.00 34.73 1.98
364 368 0.335361 AGACCGGGTCAGGACAGTAT 59.665 55.000 27.87 1.89 34.60 2.12
365 369 0.611062 CAGACCGGGTCAGGACAGTA 60.611 60.000 27.87 0.00 34.60 2.74
366 370 1.908793 CAGACCGGGTCAGGACAGT 60.909 63.158 27.87 3.42 34.60 3.55
367 371 2.650116 CCAGACCGGGTCAGGACAG 61.650 68.421 29.21 11.56 40.93 3.51
368 372 2.603473 CCAGACCGGGTCAGGACA 60.603 66.667 29.21 0.00 40.93 4.02
370 374 2.203182 AACCAGACCGGGTCAGGA 59.797 61.111 36.56 0.00 40.93 3.86
371 375 2.347490 CAACCAGACCGGGTCAGG 59.653 66.667 30.60 30.60 43.47 3.86
404 428 3.412237 TTACCAGGGAGCAAGTGTAAC 57.588 47.619 0.00 0.00 0.00 2.50
405 429 4.650972 AATTACCAGGGAGCAAGTGTAA 57.349 40.909 0.00 0.00 0.00 2.41
457 481 3.129638 GCTTGACTACTACTCACTGGAGG 59.870 52.174 0.00 0.00 45.81 4.30
464 488 3.258372 CCCAACTGCTTGACTACTACTCA 59.742 47.826 0.00 0.00 0.00 3.41
470 494 2.300437 ACTCTCCCAACTGCTTGACTAC 59.700 50.000 0.00 0.00 0.00 2.73
478 502 1.194781 TCTCCCACTCTCCCAACTGC 61.195 60.000 0.00 0.00 0.00 4.40
481 505 1.268283 CCCTCTCCCACTCTCCCAAC 61.268 65.000 0.00 0.00 0.00 3.77
522 546 4.426736 TTAACAAACTCCTCCGGAAACT 57.573 40.909 5.23 0.00 0.00 2.66
555 579 1.900981 CCACGGGTGATGCAACCAA 60.901 57.895 9.74 0.00 42.24 3.67
557 581 2.033448 TCCACGGGTGATGCAACC 59.967 61.111 0.00 0.00 37.98 3.77
558 582 0.392998 ATCTCCACGGGTGATGCAAC 60.393 55.000 0.00 0.00 35.04 4.17
559 583 0.392863 CATCTCCACGGGTGATGCAA 60.393 55.000 16.67 0.00 43.51 4.08
560 584 1.221566 CATCTCCACGGGTGATGCA 59.778 57.895 16.67 0.00 43.51 3.96
563 587 1.866015 TTCTCATCTCCACGGGTGAT 58.134 50.000 0.00 2.74 36.51 3.06
565 589 1.406069 CCTTTCTCATCTCCACGGGTG 60.406 57.143 0.00 0.00 0.00 4.61
566 590 0.905357 CCTTTCTCATCTCCACGGGT 59.095 55.000 0.00 0.00 0.00 5.28
567 591 0.905357 ACCTTTCTCATCTCCACGGG 59.095 55.000 0.00 0.00 0.00 5.28
568 592 1.469940 CGACCTTTCTCATCTCCACGG 60.470 57.143 0.00 0.00 0.00 4.94
570 594 1.825474 TCCGACCTTTCTCATCTCCAC 59.175 52.381 0.00 0.00 0.00 4.02
600 662 1.967066 CTCTACGGCAAGGATCTGGAT 59.033 52.381 0.00 0.00 0.00 3.41
601 663 1.403814 CTCTACGGCAAGGATCTGGA 58.596 55.000 0.00 0.00 0.00 3.86
626 692 2.257353 GCGTCCTTGTGCCAAAGAT 58.743 52.632 0.00 0.00 0.00 2.40
635 701 1.299976 GGATTCCTGGCGTCCTTGT 59.700 57.895 9.21 0.00 0.00 3.16
716 790 2.498078 AGAAGAATCCCTCGACTCCAAC 59.502 50.000 0.00 0.00 0.00 3.77
743 820 2.703416 AGTTCGATCAGCATTTCAGCA 58.297 42.857 0.00 0.00 36.85 4.41
779 856 7.062957 ACTGGATCCAAAGAAAGAAAGAAAGA 58.937 34.615 17.00 0.00 0.00 2.52
780 857 7.282332 ACTGGATCCAAAGAAAGAAAGAAAG 57.718 36.000 17.00 0.26 0.00 2.62
781 858 7.468631 CGAACTGGATCCAAAGAAAGAAAGAAA 60.469 37.037 17.00 0.00 0.00 2.52
782 859 6.017109 CGAACTGGATCCAAAGAAAGAAAGAA 60.017 38.462 17.00 0.00 0.00 2.52
822 941 9.886132 CCTACACCTACTAACAAGTCATAATTT 57.114 33.333 0.00 0.00 0.00 1.82
827 946 5.187186 CCACCTACACCTACTAACAAGTCAT 59.813 44.000 0.00 0.00 0.00 3.06
829 948 4.620097 GCCACCTACACCTACTAACAAGTC 60.620 50.000 0.00 0.00 0.00 3.01
830 949 3.260128 GCCACCTACACCTACTAACAAGT 59.740 47.826 0.00 0.00 0.00 3.16
831 950 3.259876 TGCCACCTACACCTACTAACAAG 59.740 47.826 0.00 0.00 0.00 3.16
835 954 2.169769 GCATGCCACCTACACCTACTAA 59.830 50.000 6.36 0.00 0.00 2.24
836 955 1.760613 GCATGCCACCTACACCTACTA 59.239 52.381 6.36 0.00 0.00 1.82
838 957 0.251916 TGCATGCCACCTACACCTAC 59.748 55.000 16.68 0.00 0.00 3.18
864 987 2.034879 CAACTCATTCCGGCGTGCT 61.035 57.895 6.01 0.00 0.00 4.40
903 1026 0.550914 AGGTCAAGAAGTGTGGGCAA 59.449 50.000 0.00 0.00 0.00 4.52
907 1030 3.692257 AGATGAGGTCAAGAAGTGTGG 57.308 47.619 0.00 0.00 0.00 4.17
1104 1227 4.698583 ATACGGAGCCATATACTCGAAC 57.301 45.455 0.00 0.00 34.87 3.95
1105 1228 4.521639 ACAATACGGAGCCATATACTCGAA 59.478 41.667 0.00 0.00 34.87 3.71
1106 1229 4.077108 ACAATACGGAGCCATATACTCGA 58.923 43.478 0.00 0.00 34.87 4.04
1108 1231 4.219944 TGGACAATACGGAGCCATATACTC 59.780 45.833 0.00 0.00 0.00 2.59
1109 1232 4.157246 TGGACAATACGGAGCCATATACT 58.843 43.478 0.00 0.00 0.00 2.12
1124 1253 1.999648 ACAGTGTGGCAATGGACAAT 58.000 45.000 0.00 0.00 33.50 2.71
1143 1272 5.904630 CGTCAACACGTACATTCAAATTGAA 59.095 36.000 11.10 11.10 41.42 2.69
1163 1292 3.321648 ATGGCCAGGTCTGCGTCA 61.322 61.111 13.05 0.00 0.00 4.35
1205 1334 3.708220 GAGCTTCAGGTCGGCCTCG 62.708 68.421 5.00 1.64 44.97 4.63
1219 1348 2.343163 GACGATGCACGCTAGGAGCT 62.343 60.000 8.31 0.00 46.94 4.09
1233 1362 2.122167 GGGAGGAGAGCACGACGAT 61.122 63.158 0.00 0.00 0.00 3.73
1520 1649 0.041833 AGTAGCAGAGGGAGCCAAGA 59.958 55.000 0.00 0.00 0.00 3.02
1523 1652 1.381872 GGAGTAGCAGAGGGAGCCA 60.382 63.158 0.00 0.00 0.00 4.75
1526 1655 1.388065 CCGTGGAGTAGCAGAGGGAG 61.388 65.000 0.00 0.00 0.00 4.30
1932 2064 1.188871 TGCACGTACTGGGACATGGA 61.189 55.000 0.00 0.00 38.20 3.41
1933 2065 0.740868 CTGCACGTACTGGGACATGG 60.741 60.000 0.00 0.00 38.20 3.66
2316 2451 2.358737 CAGGACCAACGCCCTGTC 60.359 66.667 0.00 0.00 43.71 3.51
2326 2461 3.059982 CGAAGCTCCACAGGACCA 58.940 61.111 0.00 0.00 0.00 4.02
2426 2561 0.657368 CGAGAAGGCACGCACAAAAC 60.657 55.000 0.00 0.00 0.00 2.43
2497 2632 4.849329 GACTAGCGGCGGACGTGG 62.849 72.222 9.78 0.00 46.52 4.94
2649 2785 3.490759 GGACACCGACTGCATGCG 61.491 66.667 14.09 10.50 0.00 4.73
2727 2870 3.656719 CGATAACGAGTTAACGACCGATC 59.343 47.826 16.93 13.34 41.73 3.69
2728 2871 3.611517 CGATAACGAGTTAACGACCGAT 58.388 45.455 16.93 12.83 41.73 4.18
2729 2872 2.787723 GCGATAACGAGTTAACGACCGA 60.788 50.000 23.23 4.35 41.73 4.69
2730 2873 1.510338 GCGATAACGAGTTAACGACCG 59.490 52.381 23.23 13.66 41.73 4.79
2731 2874 1.510338 CGCGATAACGAGTTAACGACC 59.490 52.381 23.23 10.08 41.73 4.79
2732 2875 2.854659 CGCGATAACGAGTTAACGAC 57.145 50.000 23.23 15.30 41.73 4.34
2740 2883 0.942962 AGGGAGTACGCGATAACGAG 59.057 55.000 15.93 0.00 44.24 4.18
2741 2884 0.940126 GAGGGAGTACGCGATAACGA 59.060 55.000 15.93 0.00 42.66 3.85
2742 2885 0.040603 GGAGGGAGTACGCGATAACG 60.041 60.000 15.93 0.00 42.93 3.18
2743 2886 1.027357 TGGAGGGAGTACGCGATAAC 58.973 55.000 15.93 8.11 0.00 1.89
2744 2887 1.884579 GATGGAGGGAGTACGCGATAA 59.115 52.381 15.93 0.00 0.00 1.75
2745 2888 1.531423 GATGGAGGGAGTACGCGATA 58.469 55.000 15.93 0.00 0.00 2.92
2746 2889 1.179814 GGATGGAGGGAGTACGCGAT 61.180 60.000 15.93 0.00 0.00 4.58
2747 2890 1.826921 GGATGGAGGGAGTACGCGA 60.827 63.158 15.93 0.00 0.00 5.87
2748 2891 2.728817 GGATGGAGGGAGTACGCG 59.271 66.667 3.53 3.53 0.00 6.01
2749 2892 2.728817 CGGATGGAGGGAGTACGC 59.271 66.667 0.00 0.00 0.00 4.42
2750 2893 1.455217 ACCGGATGGAGGGAGTACG 60.455 63.158 9.46 0.00 39.21 3.67
2751 2894 0.396695 TCACCGGATGGAGGGAGTAC 60.397 60.000 9.46 0.00 39.21 2.73
2752 2895 0.337082 TTCACCGGATGGAGGGAGTA 59.663 55.000 9.46 0.00 39.21 2.59
2753 2896 0.978146 CTTCACCGGATGGAGGGAGT 60.978 60.000 9.46 0.00 39.21 3.85
2754 2897 0.687757 TCTTCACCGGATGGAGGGAG 60.688 60.000 9.46 0.00 34.17 4.30
2755 2898 0.687757 CTCTTCACCGGATGGAGGGA 60.688 60.000 9.46 4.57 36.28 4.20
2756 2899 1.826024 CTCTTCACCGGATGGAGGG 59.174 63.158 9.46 2.64 34.17 4.30
2757 2900 1.144936 GCTCTTCACCGGATGGAGG 59.855 63.158 9.46 3.15 34.17 4.30
2758 2901 1.227089 CGCTCTTCACCGGATGGAG 60.227 63.158 9.46 7.27 39.21 3.86
2759 2902 2.892640 CGCTCTTCACCGGATGGA 59.107 61.111 9.46 0.00 39.21 3.41
2760 2903 2.892425 GCGCTCTTCACCGGATGG 60.892 66.667 9.46 0.00 42.84 3.51
2761 2904 1.522355 ATGCGCTCTTCACCGGATG 60.522 57.895 9.46 2.48 34.24 3.51
2762 2905 1.522355 CATGCGCTCTTCACCGGAT 60.522 57.895 9.46 0.00 35.90 4.18
2763 2906 2.125552 CATGCGCTCTTCACCGGA 60.126 61.111 9.46 0.00 0.00 5.14
2764 2907 1.577328 AAACATGCGCTCTTCACCGG 61.577 55.000 9.73 0.00 0.00 5.28
2765 2908 0.453282 CAAACATGCGCTCTTCACCG 60.453 55.000 9.73 0.00 0.00 4.94
2766 2909 0.874390 TCAAACATGCGCTCTTCACC 59.126 50.000 9.73 0.00 0.00 4.02
2767 2910 2.907910 ATCAAACATGCGCTCTTCAC 57.092 45.000 9.73 0.00 0.00 3.18
2768 2911 3.921119 AAATCAAACATGCGCTCTTCA 57.079 38.095 9.73 0.00 0.00 3.02
2769 2912 6.689178 TTTTAAATCAAACATGCGCTCTTC 57.311 33.333 9.73 0.00 0.00 2.87
2770 2913 7.656707 AATTTTAAATCAAACATGCGCTCTT 57.343 28.000 9.73 0.00 0.00 2.85
2771 2914 7.171337 ACAAATTTTAAATCAAACATGCGCTCT 59.829 29.630 9.73 0.00 0.00 4.09
2772 2915 7.290118 ACAAATTTTAAATCAAACATGCGCTC 58.710 30.769 9.73 0.00 0.00 5.03
2773 2916 7.188468 ACAAATTTTAAATCAAACATGCGCT 57.812 28.000 9.73 0.00 0.00 5.92
2774 2917 7.585573 TGAACAAATTTTAAATCAAACATGCGC 59.414 29.630 0.00 0.00 0.00 6.09
2775 2918 8.881231 GTGAACAAATTTTAAATCAAACATGCG 58.119 29.630 0.00 0.00 0.00 4.73
2776 2919 9.713740 TGTGAACAAATTTTAAATCAAACATGC 57.286 25.926 0.00 0.00 0.00 4.06
2814 2957 9.487790 CATGTAAAAATTAAGGTGACCATTTGT 57.512 29.630 3.63 0.00 0.00 2.83
2815 2958 9.487790 ACATGTAAAAATTAAGGTGACCATTTG 57.512 29.630 3.63 0.00 0.00 2.32
2818 2961 9.528489 AGTACATGTAAAAATTAAGGTGACCAT 57.472 29.630 7.25 0.00 0.00 3.55
2819 2962 8.927675 AGTACATGTAAAAATTAAGGTGACCA 57.072 30.769 7.25 0.00 0.00 4.02
2829 2972 9.195411 TCGACGAGTTAAGTACATGTAAAAATT 57.805 29.630 7.25 3.45 0.00 1.82
2830 2973 8.746922 TCGACGAGTTAAGTACATGTAAAAAT 57.253 30.769 7.25 2.00 0.00 1.82
2831 2974 8.572828 TTCGACGAGTTAAGTACATGTAAAAA 57.427 30.769 7.25 0.00 0.00 1.94
2832 2975 7.326789 CCTTCGACGAGTTAAGTACATGTAAAA 59.673 37.037 7.25 0.00 0.00 1.52
2833 2976 6.803320 CCTTCGACGAGTTAAGTACATGTAAA 59.197 38.462 7.25 0.00 0.00 2.01
2834 2977 6.072508 ACCTTCGACGAGTTAAGTACATGTAA 60.073 38.462 7.25 0.00 0.00 2.41
2835 2978 5.412594 ACCTTCGACGAGTTAAGTACATGTA 59.587 40.000 0.08 0.08 0.00 2.29
2836 2979 4.217118 ACCTTCGACGAGTTAAGTACATGT 59.783 41.667 2.69 2.69 0.00 3.21
2837 2980 4.730657 ACCTTCGACGAGTTAAGTACATG 58.269 43.478 0.00 0.00 0.00 3.21
2838 2981 5.159209 CAACCTTCGACGAGTTAAGTACAT 58.841 41.667 0.00 0.00 0.00 2.29
2839 2982 4.539870 CAACCTTCGACGAGTTAAGTACA 58.460 43.478 0.00 0.00 0.00 2.90
2840 2983 3.916776 CCAACCTTCGACGAGTTAAGTAC 59.083 47.826 0.00 0.00 0.00 2.73
2841 2984 3.820467 TCCAACCTTCGACGAGTTAAGTA 59.180 43.478 0.00 0.00 0.00 2.24
2842 2985 2.624838 TCCAACCTTCGACGAGTTAAGT 59.375 45.455 0.00 0.00 0.00 2.24
2843 2986 3.293311 TCCAACCTTCGACGAGTTAAG 57.707 47.619 0.00 0.00 0.00 1.85
2844 2987 3.947910 ATCCAACCTTCGACGAGTTAA 57.052 42.857 0.00 0.00 0.00 2.01
2845 2988 5.587388 ATTATCCAACCTTCGACGAGTTA 57.413 39.130 0.00 0.00 0.00 2.24
2846 2989 3.947910 TTATCCAACCTTCGACGAGTT 57.052 42.857 0.00 0.00 0.00 3.01
2847 2990 4.467198 AATTATCCAACCTTCGACGAGT 57.533 40.909 0.00 0.00 0.00 4.18
2848 2991 6.897259 TTTAATTATCCAACCTTCGACGAG 57.103 37.500 0.00 0.00 0.00 4.18
2849 2992 7.148373 CCTTTTTAATTATCCAACCTTCGACGA 60.148 37.037 0.00 0.00 0.00 4.20
2850 2993 6.964934 CCTTTTTAATTATCCAACCTTCGACG 59.035 38.462 0.00 0.00 0.00 5.12
2851 2994 7.255569 CCCTTTTTAATTATCCAACCTTCGAC 58.744 38.462 0.00 0.00 0.00 4.20
2852 2995 6.378848 CCCCTTTTTAATTATCCAACCTTCGA 59.621 38.462 0.00 0.00 0.00 3.71
2853 2996 6.378848 TCCCCTTTTTAATTATCCAACCTTCG 59.621 38.462 0.00 0.00 0.00 3.79
2854 2997 7.618117 TCTCCCCTTTTTAATTATCCAACCTTC 59.382 37.037 0.00 0.00 0.00 3.46
2855 2998 7.483881 TCTCCCCTTTTTAATTATCCAACCTT 58.516 34.615 0.00 0.00 0.00 3.50
2856 2999 7.036132 TCTCTCCCCTTTTTAATTATCCAACCT 60.036 37.037 0.00 0.00 0.00 3.50
2857 3000 7.123383 TCTCTCCCCTTTTTAATTATCCAACC 58.877 38.462 0.00 0.00 0.00 3.77
2858 3001 8.633561 CATCTCTCCCCTTTTTAATTATCCAAC 58.366 37.037 0.00 0.00 0.00 3.77
2859 3002 8.565239 TCATCTCTCCCCTTTTTAATTATCCAA 58.435 33.333 0.00 0.00 0.00 3.53
2860 3003 8.113114 TCATCTCTCCCCTTTTTAATTATCCA 57.887 34.615 0.00 0.00 0.00 3.41
2861 3004 9.018582 CATCATCTCTCCCCTTTTTAATTATCC 57.981 37.037 0.00 0.00 0.00 2.59
2862 3005 9.018582 CCATCATCTCTCCCCTTTTTAATTATC 57.981 37.037 0.00 0.00 0.00 1.75
2863 3006 8.514504 ACCATCATCTCTCCCCTTTTTAATTAT 58.485 33.333 0.00 0.00 0.00 1.28
2864 3007 7.882755 ACCATCATCTCTCCCCTTTTTAATTA 58.117 34.615 0.00 0.00 0.00 1.40
2865 3008 6.745857 ACCATCATCTCTCCCCTTTTTAATT 58.254 36.000 0.00 0.00 0.00 1.40
2866 3009 6.347061 ACCATCATCTCTCCCCTTTTTAAT 57.653 37.500 0.00 0.00 0.00 1.40
2867 3010 5.796502 ACCATCATCTCTCCCCTTTTTAA 57.203 39.130 0.00 0.00 0.00 1.52
2868 3011 5.796502 AACCATCATCTCTCCCCTTTTTA 57.203 39.130 0.00 0.00 0.00 1.52
2869 3012 4.682021 AACCATCATCTCTCCCCTTTTT 57.318 40.909 0.00 0.00 0.00 1.94
2870 3013 4.347607 CAAACCATCATCTCTCCCCTTTT 58.652 43.478 0.00 0.00 0.00 2.27
2871 3014 3.879321 GCAAACCATCATCTCTCCCCTTT 60.879 47.826 0.00 0.00 0.00 3.11
2872 3015 2.357569 GCAAACCATCATCTCTCCCCTT 60.358 50.000 0.00 0.00 0.00 3.95
2873 3016 1.213926 GCAAACCATCATCTCTCCCCT 59.786 52.381 0.00 0.00 0.00 4.79
2874 3017 1.064463 TGCAAACCATCATCTCTCCCC 60.064 52.381 0.00 0.00 0.00 4.81
2875 3018 2.019984 GTGCAAACCATCATCTCTCCC 58.980 52.381 0.00 0.00 0.00 4.30
2876 3019 2.996631 AGTGCAAACCATCATCTCTCC 58.003 47.619 0.00 0.00 0.00 3.71
2877 3020 4.764172 AGTAGTGCAAACCATCATCTCTC 58.236 43.478 0.00 0.00 0.00 3.20
2878 3021 4.833478 AGTAGTGCAAACCATCATCTCT 57.167 40.909 0.00 0.00 0.00 3.10
2879 3022 4.697352 ACAAGTAGTGCAAACCATCATCTC 59.303 41.667 0.00 0.00 0.00 2.75
2880 3023 4.655963 ACAAGTAGTGCAAACCATCATCT 58.344 39.130 0.00 0.00 0.00 2.90
2881 3024 5.376854 AACAAGTAGTGCAAACCATCATC 57.623 39.130 0.00 0.00 0.00 2.92
2882 3025 6.625740 GCATAACAAGTAGTGCAAACCATCAT 60.626 38.462 0.00 0.00 37.52 2.45
2883 3026 5.335583 GCATAACAAGTAGTGCAAACCATCA 60.336 40.000 0.00 0.00 37.52 3.07
2884 3027 5.095490 GCATAACAAGTAGTGCAAACCATC 58.905 41.667 0.00 0.00 37.52 3.51
2885 3028 4.522405 TGCATAACAAGTAGTGCAAACCAT 59.478 37.500 9.16 0.00 43.83 3.55
2886 3029 3.885901 TGCATAACAAGTAGTGCAAACCA 59.114 39.130 9.16 0.00 43.83 3.67
2887 3030 4.497473 TGCATAACAAGTAGTGCAAACC 57.503 40.909 9.16 0.00 43.83 3.27
2892 3035 5.062934 TGAACGTATGCATAACAAGTAGTGC 59.937 40.000 8.28 0.36 38.05 4.40
2893 3036 6.090223 TGTGAACGTATGCATAACAAGTAGTG 59.910 38.462 8.28 0.00 0.00 2.74
2894 3037 6.160684 TGTGAACGTATGCATAACAAGTAGT 58.839 36.000 8.28 0.00 0.00 2.73
2895 3038 6.641176 TGTGAACGTATGCATAACAAGTAG 57.359 37.500 8.28 0.00 0.00 2.57
2896 3039 7.056002 CTTGTGAACGTATGCATAACAAGTA 57.944 36.000 26.21 8.31 38.65 2.24
2897 3040 5.468746 ACTTGTGAACGTATGCATAACAAGT 59.531 36.000 30.53 30.53 46.82 3.16
2898 3041 5.927030 ACTTGTGAACGTATGCATAACAAG 58.073 37.500 29.63 29.63 45.28 3.16
2899 3042 5.933187 ACTTGTGAACGTATGCATAACAA 57.067 34.783 16.26 16.26 0.00 2.83
2900 3043 5.933187 AACTTGTGAACGTATGCATAACA 57.067 34.783 8.28 6.03 0.00 2.41
2901 3044 7.617533 AAAAACTTGTGAACGTATGCATAAC 57.382 32.000 8.28 3.20 0.00 1.89
2926 3069 9.268268 CACAATTACCTGTAGTTGACTTAAAGA 57.732 33.333 16.44 0.00 36.60 2.52
2927 3070 9.052759 ACACAATTACCTGTAGTTGACTTAAAG 57.947 33.333 16.44 0.00 36.60 1.85
2931 3074 5.238650 GCACACAATTACCTGTAGTTGACTT 59.761 40.000 16.44 1.41 36.60 3.01
2949 3092 3.697444 CGTAGCAACGCGCACACA 61.697 61.111 5.73 0.00 46.13 3.72
2965 3108 6.924060 TGTGGATTTTTACATTTTTACACCCG 59.076 34.615 0.00 0.00 0.00 5.28
3012 3155 3.119495 GCAACGACCAGCAATTTTCCTAT 60.119 43.478 0.00 0.00 0.00 2.57
3016 3159 2.132740 TGCAACGACCAGCAATTTTC 57.867 45.000 0.00 0.00 37.90 2.29
3033 3177 5.539582 TTCTAACAATGTATCACCGTTGC 57.460 39.130 0.00 0.00 35.23 4.17
3066 3210 3.071312 TCTTCATTGCCCATTTTTGCTGT 59.929 39.130 0.00 0.00 0.00 4.40
3076 3220 4.952071 TTCATGTTTTCTTCATTGCCCA 57.048 36.364 0.00 0.00 0.00 5.36
3102 3246 6.127842 GGATGAGGAGGTAAAAACGCAAATAA 60.128 38.462 0.00 0.00 0.00 1.40
3104 3248 4.157840 GGATGAGGAGGTAAAAACGCAAAT 59.842 41.667 0.00 0.00 0.00 2.32
3105 3249 3.504520 GGATGAGGAGGTAAAAACGCAAA 59.495 43.478 0.00 0.00 0.00 3.68
3107 3251 2.617021 GGGATGAGGAGGTAAAAACGCA 60.617 50.000 0.00 0.00 0.00 5.24
3108 3252 2.014857 GGGATGAGGAGGTAAAAACGC 58.985 52.381 0.00 0.00 0.00 4.84
3109 3253 3.343941 TGGGATGAGGAGGTAAAAACG 57.656 47.619 0.00 0.00 0.00 3.60
3110 3254 4.207955 GGATGGGATGAGGAGGTAAAAAC 58.792 47.826 0.00 0.00 0.00 2.43
3111 3255 3.855599 TGGATGGGATGAGGAGGTAAAAA 59.144 43.478 0.00 0.00 0.00 1.94
3123 3268 1.683011 GGTGTCAACCTGGATGGGATG 60.683 57.143 0.00 0.00 43.84 3.51
3124 3269 0.625849 GGTGTCAACCTGGATGGGAT 59.374 55.000 0.00 0.00 43.84 3.85
3127 3272 0.405585 AAGGGTGTCAACCTGGATGG 59.594 55.000 11.11 0.00 46.70 3.51
3152 3297 2.647529 ATCGTTGTACGTGATGCAGA 57.352 45.000 0.00 0.00 43.14 4.26
3168 3313 0.794473 ATGCATGCGCTGTCATATCG 59.206 50.000 14.09 0.00 39.64 2.92
3171 3316 1.886886 ATGATGCATGCGCTGTCATA 58.113 45.000 19.55 0.00 40.22 2.15
3212 3357 2.614057 GTGTTTCAACTCCTGAGGTGTG 59.386 50.000 7.01 2.35 45.99 3.82
3221 3366 2.650322 TGGAAGGTGTGTTTCAACTCC 58.350 47.619 0.00 0.00 44.18 3.85
3258 3405 7.552459 TGAGGTTGAACAGTCATTATCGAATA 58.448 34.615 0.00 0.00 32.48 1.75
3291 3438 7.235935 ACTACTAAACTTAGGCACATGTACA 57.764 36.000 0.00 0.00 35.08 2.90
3313 3460 9.705290 GGTTCAATTTGGTACATTTTCATTACT 57.295 29.630 0.00 0.00 39.30 2.24
3314 3461 9.482627 TGGTTCAATTTGGTACATTTTCATTAC 57.517 29.630 0.00 0.00 39.30 1.89
3316 3463 9.001542 CATGGTTCAATTTGGTACATTTTCATT 57.998 29.630 0.00 0.00 39.30 2.57
3318 3465 6.426328 GCATGGTTCAATTTGGTACATTTTCA 59.574 34.615 0.00 0.00 39.30 2.69
3319 3466 6.426328 TGCATGGTTCAATTTGGTACATTTTC 59.574 34.615 0.00 0.00 39.30 2.29
3430 3591 9.900710 ACTAGTAGATAATAGTTTGCATCTTCG 57.099 33.333 3.59 0.00 33.80 3.79
3444 3605 9.875708 ATTCCTCTCACTGAACTAGTAGATAAT 57.124 33.333 3.59 0.00 37.60 1.28
3449 3610 7.164230 ACAATTCCTCTCACTGAACTAGTAG 57.836 40.000 0.00 0.00 37.60 2.57
3450 3611 7.148289 CGTACAATTCCTCTCACTGAACTAGTA 60.148 40.741 0.00 0.00 37.60 1.82
3451 3612 6.349445 CGTACAATTCCTCTCACTGAACTAGT 60.349 42.308 0.00 0.00 41.36 2.57
3452 3613 6.030849 CGTACAATTCCTCTCACTGAACTAG 58.969 44.000 0.00 0.00 0.00 2.57
3460 3621 2.527100 CCGTCGTACAATTCCTCTCAC 58.473 52.381 0.00 0.00 0.00 3.51
3501 3665 0.381801 GCTGTTGTGTTCACCCTGTG 59.618 55.000 0.37 0.00 34.45 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.