Multiple sequence alignment - TraesCS2B01G218100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G218100 chr2B 100.000 5114 0 0 1 5114 206756388 206751275 0.000000e+00 9444
1 TraesCS2B01G218100 chr2B 94.505 91 5 0 5023 5113 519331904 519331814 1.920000e-29 141
2 TraesCS2B01G218100 chr2D 95.717 4203 105 27 546 4706 147234129 147229960 0.000000e+00 6695
3 TraesCS2B01G218100 chr2D 94.194 620 22 7 4411 5023 146541607 146540995 0.000000e+00 933
4 TraesCS2B01G218100 chr2D 93.871 620 24 7 4411 5023 146866054 146865442 0.000000e+00 922
5 TraesCS2B01G218100 chr2D 88.245 587 39 13 1 560 147238469 147237886 0.000000e+00 675
6 TraesCS2B01G218100 chr2D 90.341 176 17 0 1843 2018 342099632 342099807 1.110000e-56 231
7 TraesCS2B01G218100 chr2D 95.775 142 5 1 4706 4847 147229869 147229729 1.430000e-55 228
8 TraesCS2B01G218100 chr2D 83.721 215 18 6 3940 4153 325649368 325649566 2.430000e-43 187
9 TraesCS2B01G218100 chr2D 83.256 215 19 6 3940 4153 118010919 118011117 1.130000e-41 182
10 TraesCS2B01G218100 chr2D 94.737 95 4 1 5020 5113 648631206 648631300 4.130000e-31 147
11 TraesCS2B01G218100 chr2A 96.637 3895 88 18 836 4705 155589893 155593769 0.000000e+00 6427
12 TraesCS2B01G218100 chr2A 84.192 835 78 22 1 794 155587373 155588194 0.000000e+00 761
13 TraesCS2B01G218100 chr2A 93.857 293 14 2 4706 4997 155593919 155594208 6.080000e-119 438
14 TraesCS2B01G218100 chr5A 90.608 181 15 2 1840 2019 10477040 10476861 6.620000e-59 239
15 TraesCS2B01G218100 chr4A 91.429 175 12 2 1845 2017 580299045 580298872 2.380000e-58 237
16 TraesCS2B01G218100 chr4A 94.624 93 5 0 5021 5113 714952480 714952388 1.480000e-30 145
17 TraesCS2B01G218100 chr4A 92.857 98 5 2 5017 5113 654373128 654373224 1.920000e-29 141
18 TraesCS2B01G218100 chr1B 90.751 173 16 0 1844 2016 363632799 363632627 1.110000e-56 231
19 TraesCS2B01G218100 chr1B 93.548 93 6 0 5020 5112 83631895 83631987 6.900000e-29 139
20 TraesCS2B01G218100 chr5D 90.643 171 15 1 1850 2019 13715208 13715038 5.150000e-55 226
21 TraesCS2B01G218100 chr5D 90.643 171 14 2 1846 2015 509230404 509230235 5.150000e-55 226
22 TraesCS2B01G218100 chr7D 89.714 175 17 1 1844 2017 312467082 312466908 6.660000e-54 222
23 TraesCS2B01G218100 chr7D 94.505 91 5 0 5023 5113 294039468 294039378 1.920000e-29 141
24 TraesCS2B01G218100 chr7D 94.444 90 5 0 5025 5114 604992291 604992380 6.900000e-29 139
25 TraesCS2B01G218100 chr4D 81.860 215 22 6 3940 4153 294388148 294387950 1.140000e-36 165
26 TraesCS2B01G218100 chr6D 94.505 91 5 0 5023 5113 16751332 16751422 1.920000e-29 141
27 TraesCS2B01G218100 chr3D 90.476 105 8 2 5010 5113 482860232 482860335 2.480000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G218100 chr2B 206751275 206756388 5113 True 9444.000000 9444 100.000000 1 5114 1 chr2B.!!$R1 5113
1 TraesCS2B01G218100 chr2D 147229729 147238469 8740 True 2532.666667 6695 93.245667 1 4847 3 chr2D.!!$R3 4846
2 TraesCS2B01G218100 chr2D 146540995 146541607 612 True 933.000000 933 94.194000 4411 5023 1 chr2D.!!$R1 612
3 TraesCS2B01G218100 chr2D 146865442 146866054 612 True 922.000000 922 93.871000 4411 5023 1 chr2D.!!$R2 612
4 TraesCS2B01G218100 chr2A 155587373 155594208 6835 False 2542.000000 6427 91.562000 1 4997 3 chr2A.!!$F1 4996

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
952 6460 1.453928 CCCCGCCCTGAAAGATTCC 60.454 63.158 0.00 0.0 34.07 3.01 F
953 6461 1.609783 CCCGCCCTGAAAGATTCCT 59.390 57.895 0.00 0.0 34.07 3.36 F
2058 7594 1.630369 CATTGAACCCTCCTGAGTCCA 59.370 52.381 0.00 0.0 0.00 4.02 F
2258 7794 0.940126 CGTAGTGAATGCTCCCATGC 59.060 55.000 0.00 0.0 0.00 4.06 F
2749 8285 3.116174 AGGAAGGTCTAATTCCCTCCAC 58.884 50.000 1.18 0.0 46.24 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 7502 2.128035 CATCTCGGTCAGTTAATCGCC 58.872 52.381 0.00 0.0 0.00 5.54 R
2240 7776 2.338577 AGCATGGGAGCATTCACTAC 57.661 50.000 0.00 0.0 36.85 2.73 R
3813 9349 0.528684 GGGGACGAATTCTCTGCTCG 60.529 60.000 3.52 0.0 38.53 5.03 R
3979 9515 4.770531 TCCAGTCTTATCTTCGAAACCTGA 59.229 41.667 0.00 0.0 0.00 3.86 R
4370 9908 3.231160 GCAAAATAACAACCGGAAGACG 58.769 45.455 9.46 0.0 43.80 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.839778 GGATCAGAGTAGGGACTTAGCT 58.160 50.000 0.00 0.00 41.75 3.32
33 34 3.612247 CTTAGCTGGGCGCCACACT 62.612 63.158 30.85 22.88 40.39 3.55
70 71 2.100631 GCACCGATCTTCCACGTGG 61.101 63.158 29.26 29.26 0.00 4.94
239 255 6.766467 TGTCTTGTCCTTTACTCTTTTCTTCC 59.234 38.462 0.00 0.00 0.00 3.46
252 268 6.095580 ACTCTTTTCTTCCGCTCTTTTTCTTT 59.904 34.615 0.00 0.00 0.00 2.52
311 330 9.490379 TTTTGGTAAACACAATGTTAACACTTT 57.510 25.926 11.22 0.00 40.14 2.66
341 361 6.782494 AGATAAGGTCAGTTTTGAAAATGGGT 59.218 34.615 4.36 0.00 34.95 4.51
504 544 9.846248 ACTCAGCTTTTAATTACATTGACATTC 57.154 29.630 0.00 0.00 0.00 2.67
761 4586 5.447624 ACTAAAGAAAACATGGAAACCGG 57.552 39.130 0.00 0.00 0.00 5.28
904 6403 4.803426 CCGTCTGGCCGACTCAGC 62.803 72.222 20.38 0.40 40.59 4.26
952 6460 1.453928 CCCCGCCCTGAAAGATTCC 60.454 63.158 0.00 0.00 34.07 3.01
953 6461 1.609783 CCCGCCCTGAAAGATTCCT 59.390 57.895 0.00 0.00 34.07 3.36
1171 6682 3.453679 GCCTCGGTCGCCTTCTCT 61.454 66.667 0.00 0.00 0.00 3.10
1386 6905 4.081972 TGGCTCTAGTCATGTGAGAGAAAC 60.082 45.833 19.02 11.54 39.29 2.78
1447 6966 4.092821 TCGCACGAGAATTTAATTGGACAG 59.907 41.667 0.00 0.00 0.00 3.51
1581 7104 3.825328 ACTTCTGTTCTGCAGTTTGGAT 58.175 40.909 14.67 0.00 45.23 3.41
1606 7132 8.686397 TGTACAATTTGCATGTTTGATATGAC 57.314 30.769 9.86 0.00 32.27 3.06
1626 7152 2.954753 GCTTGTCTTCCCGTGCGTG 61.955 63.158 0.00 0.00 0.00 5.34
1826 7358 2.037251 GGCAGGTCTTGTGTAGTTCTGA 59.963 50.000 0.00 0.00 31.50 3.27
1858 7390 6.989155 ATGAATTGCAATGGTCAGGATATT 57.011 33.333 13.82 0.00 0.00 1.28
1908 7440 4.381079 GCTGAGTAGGGATAAATAGGCGAG 60.381 50.000 0.00 0.00 0.00 5.03
2058 7594 1.630369 CATTGAACCCTCCTGAGTCCA 59.370 52.381 0.00 0.00 0.00 4.02
2081 7617 5.382618 GACAAATGGTCTGAGATTTGCTT 57.617 39.130 16.47 4.46 41.37 3.91
2240 7776 1.640428 ATTAGTGACACATGACGCCG 58.360 50.000 8.59 0.00 0.00 6.46
2258 7794 0.940126 CGTAGTGAATGCTCCCATGC 59.060 55.000 0.00 0.00 0.00 4.06
2336 7872 6.043938 AGTGTACAGAATTTCCTTGGAAGGTA 59.956 38.462 0.00 0.00 46.54 3.08
2380 7916 8.040727 TGACACACTGCTAATACTACATCATTT 58.959 33.333 0.00 0.00 0.00 2.32
2453 7989 8.725148 ACTTTTGTTTATCTGCTCATAGAACAG 58.275 33.333 0.00 0.00 0.00 3.16
2519 8055 5.389935 GCACTACTCTTTTCAGGACGATTTG 60.390 44.000 0.00 0.00 0.00 2.32
2749 8285 3.116174 AGGAAGGTCTAATTCCCTCCAC 58.884 50.000 1.18 0.00 46.24 4.02
2776 8312 6.366877 CCAGGAGCAAAATAAACAGAACATTG 59.633 38.462 0.00 0.00 0.00 2.82
2801 8337 6.092670 GCTGAATCTTACAAGCATGAACAGTA 59.907 38.462 0.00 0.00 0.00 2.74
2814 8350 6.043411 GCATGAACAGTAAAGTAGAGGTAGG 58.957 44.000 0.00 0.00 0.00 3.18
2867 8403 8.544622 TGTTTCTGGTCCATATTTCAGTATGTA 58.455 33.333 0.00 0.00 37.40 2.29
2968 8504 7.755591 TGCAAGAAGAATATGACTTTGATGAC 58.244 34.615 0.00 0.00 0.00 3.06
2980 8516 5.242838 TGACTTTGATGACAAATGGTTACCC 59.757 40.000 0.00 0.00 43.64 3.69
3203 8739 6.645790 ATCTGAAGTCTCATGTTGCTTTTT 57.354 33.333 0.00 0.00 0.00 1.94
3813 9349 4.180057 CCATGTACTTGAGCTTGTCTCTC 58.820 47.826 10.20 0.00 42.38 3.20
4163 9700 2.159198 GGACGAGCATTTTTGCCATCAT 60.159 45.455 0.00 0.00 34.90 2.45
4276 9814 2.158842 AGCACCAAGGCAGTAGATGATC 60.159 50.000 0.00 0.00 35.83 2.92
4298 9836 5.428253 TCAATATTCAGCTGACAGGTTACC 58.572 41.667 18.03 0.00 0.00 2.85
4326 9864 1.339610 CTATGAGCCTGTCCTTCCTCG 59.660 57.143 0.00 0.00 0.00 4.63
4370 9908 4.047142 CAGCACTTTCCTTTTCTTTCTGC 58.953 43.478 0.00 0.00 0.00 4.26
4475 10014 1.876156 CTCTGTTCAACTGTTGCCTCC 59.124 52.381 15.52 4.09 0.00 4.30
4476 10015 1.490490 TCTGTTCAACTGTTGCCTCCT 59.510 47.619 15.52 0.00 0.00 3.69
4477 10016 1.876156 CTGTTCAACTGTTGCCTCCTC 59.124 52.381 15.52 3.38 0.00 3.71
4642 10186 0.657368 CCGCAACTTTCGAGCAACAC 60.657 55.000 0.00 0.00 0.00 3.32
4782 10476 9.601217 GTTGAGATTTGTCTGTAATGGTACTAT 57.399 33.333 0.00 0.00 0.00 2.12
4834 10528 1.446907 GGCTATGATGGGAATCGCAG 58.553 55.000 6.12 0.00 0.00 5.18
4946 10640 1.895131 GAAAATGCTGGGGTCATGTGT 59.105 47.619 0.00 0.00 0.00 3.72
4958 10652 2.548057 GGTCATGTGTTTCTGAGCGAAA 59.452 45.455 0.00 0.00 39.23 3.46
5023 10720 6.070767 CCGGTGTGATTATAGGAGGATGTATT 60.071 42.308 0.00 0.00 0.00 1.89
5024 10721 7.386851 CGGTGTGATTATAGGAGGATGTATTT 58.613 38.462 0.00 0.00 0.00 1.40
5025 10722 7.878127 CGGTGTGATTATAGGAGGATGTATTTT 59.122 37.037 0.00 0.00 0.00 1.82
5026 10723 9.574516 GGTGTGATTATAGGAGGATGTATTTTT 57.425 33.333 0.00 0.00 0.00 1.94
5047 10744 4.652679 TTTAGAAAAGGAGGAAGACCCC 57.347 45.455 0.00 0.00 36.73 4.95
5048 10745 1.373536 AGAAAAGGAGGAAGACCCCC 58.626 55.000 0.00 0.00 36.73 5.40
5049 10746 0.035343 GAAAAGGAGGAAGACCCCCG 60.035 60.000 0.00 0.00 36.73 5.73
5050 10747 1.498176 AAAAGGAGGAAGACCCCCGG 61.498 60.000 0.00 0.00 36.73 5.73
5056 10753 3.787001 GAAGACCCCCGGCCTCTG 61.787 72.222 0.00 0.00 0.00 3.35
5061 10758 4.447342 CCCCCGGCCTCTGCATTT 62.447 66.667 0.00 0.00 40.13 2.32
5062 10759 3.142838 CCCCGGCCTCTGCATTTG 61.143 66.667 0.00 0.00 40.13 2.32
5063 10760 3.142838 CCCGGCCTCTGCATTTGG 61.143 66.667 0.00 0.00 40.13 3.28
5064 10761 2.045045 CCGGCCTCTGCATTTGGA 60.045 61.111 0.00 0.00 40.13 3.53
5065 10762 1.454479 CCGGCCTCTGCATTTGGAT 60.454 57.895 0.00 0.00 40.13 3.41
5066 10763 1.731433 CCGGCCTCTGCATTTGGATG 61.731 60.000 0.00 0.00 40.13 3.51
5067 10764 0.749091 CGGCCTCTGCATTTGGATGA 60.749 55.000 0.00 0.00 40.13 2.92
5068 10765 1.700955 GGCCTCTGCATTTGGATGAT 58.299 50.000 0.00 0.00 40.13 2.45
5069 10766 1.340248 GGCCTCTGCATTTGGATGATG 59.660 52.381 0.00 0.00 40.13 3.07
5075 10772 2.232756 GCATTTGGATGATGCATGCA 57.767 45.000 25.04 25.04 46.96 3.96
5079 10776 1.558233 TTGGATGATGCATGCAACCA 58.442 45.000 26.68 25.37 44.71 3.67
5080 10777 1.783071 TGGATGATGCATGCAACCAT 58.217 45.000 28.10 28.10 39.12 3.55
5081 10778 2.112190 TGGATGATGCATGCAACCATT 58.888 42.857 28.26 14.04 39.12 3.16
5082 10779 2.502130 TGGATGATGCATGCAACCATTT 59.498 40.909 28.26 13.39 39.12 2.32
5083 10780 3.055021 TGGATGATGCATGCAACCATTTT 60.055 39.130 28.26 12.74 39.12 1.82
5084 10781 4.161754 TGGATGATGCATGCAACCATTTTA 59.838 37.500 28.26 19.00 39.12 1.52
5085 10782 5.163290 TGGATGATGCATGCAACCATTTTAT 60.163 36.000 28.26 15.20 39.12 1.40
5086 10783 5.761234 GGATGATGCATGCAACCATTTTATT 59.239 36.000 28.26 14.26 32.46 1.40
5087 10784 6.930164 GGATGATGCATGCAACCATTTTATTA 59.070 34.615 28.26 9.90 32.46 0.98
5088 10785 7.441760 GGATGATGCATGCAACCATTTTATTAA 59.558 33.333 28.26 9.29 32.46 1.40
5089 10786 8.911918 ATGATGCATGCAACCATTTTATTAAT 57.088 26.923 26.68 1.78 0.00 1.40
5090 10787 8.734218 TGATGCATGCAACCATTTTATTAATT 57.266 26.923 26.68 1.01 0.00 1.40
5091 10788 9.828039 TGATGCATGCAACCATTTTATTAATTA 57.172 25.926 26.68 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.015406 CCTACAGTGTGGCGCCCA 62.015 66.667 26.77 18.95 0.00 5.36
33 34 1.742411 GCTTTATGAGCCGCACCTACA 60.742 52.381 0.00 0.00 46.01 2.74
70 71 2.423446 CCAGCCCATAGGAGACGC 59.577 66.667 0.00 0.00 33.47 5.19
154 155 9.528018 AAAATCAGAAGATAAAAGCGTGAAAAA 57.472 25.926 0.00 0.00 33.08 1.94
170 171 8.171164 AGGAAGTGGAAACTAAAAATCAGAAG 57.829 34.615 0.00 0.00 0.00 2.85
172 173 6.426937 CGAGGAAGTGGAAACTAAAAATCAGA 59.573 38.462 0.00 0.00 0.00 3.27
175 176 6.555812 ACGAGGAAGTGGAAACTAAAAATC 57.444 37.500 0.00 0.00 0.00 2.17
176 177 6.771267 AGAACGAGGAAGTGGAAACTAAAAAT 59.229 34.615 0.00 0.00 0.00 1.82
182 183 3.840124 AAGAACGAGGAAGTGGAAACT 57.160 42.857 0.00 0.00 0.00 2.66
214 230 6.766467 GGAAGAAAAGAGTAAAGGACAAGACA 59.234 38.462 0.00 0.00 0.00 3.41
476 516 9.846248 ATGTCAATGTAATTAAAAGCTGAGTTC 57.154 29.630 0.00 0.00 32.46 3.01
652 4464 6.374053 CCAACTTTTGTTCTGGGTTTCATTTT 59.626 34.615 0.00 0.00 41.35 1.82
938 6437 3.198872 CGAGTAAGGAATCTTTCAGGGC 58.801 50.000 0.00 0.00 34.59 5.19
952 6460 3.522553 GGTTTGGATGAGGACGAGTAAG 58.477 50.000 0.00 0.00 0.00 2.34
953 6461 2.235402 GGGTTTGGATGAGGACGAGTAA 59.765 50.000 0.00 0.00 0.00 2.24
1171 6682 2.338620 CGCACGTTGGTCTGGAGA 59.661 61.111 0.00 0.00 0.00 3.71
1386 6905 2.771763 AAGTGAGAGCCCAGTTCGCG 62.772 60.000 0.00 0.00 0.00 5.87
1429 6948 5.779806 ACGACTGTCCAATTAAATTCTCG 57.220 39.130 1.55 0.00 0.00 4.04
1447 6966 4.478843 TCACGCTCTATACCAATACGAC 57.521 45.455 0.00 0.00 0.00 4.34
1581 7104 8.522003 AGTCATATCAAACATGCAAATTGTACA 58.478 29.630 0.00 0.00 0.00 2.90
1606 7132 2.671177 CGCACGGGAAGACAAGCAG 61.671 63.158 0.00 0.00 0.00 4.24
1626 7152 0.733150 GGATACAGAGCCAAAACCGC 59.267 55.000 0.00 0.00 0.00 5.68
1628 7154 2.092323 GTGGGATACAGAGCCAAAACC 58.908 52.381 0.00 0.00 39.74 3.27
1826 7358 6.154877 TGACCATTGCAATTCATATCCAAACT 59.845 34.615 9.83 0.00 0.00 2.66
1908 7440 4.394920 TCATCAGGCGATTAACTGGAAAAC 59.605 41.667 0.00 0.00 35.47 2.43
1966 7502 2.128035 CATCTCGGTCAGTTAATCGCC 58.872 52.381 0.00 0.00 0.00 5.54
2081 7617 3.118261 GGTCAATATGTTCCAGCTCTCCA 60.118 47.826 0.00 0.00 0.00 3.86
2240 7776 2.338577 AGCATGGGAGCATTCACTAC 57.661 50.000 0.00 0.00 36.85 2.73
2380 7916 5.686841 GCATAATAATTCAAACGCAGCATCA 59.313 36.000 0.00 0.00 0.00 3.07
2423 7959 9.102757 TCTATGAGCAGATAAACAAAAGTGATC 57.897 33.333 0.00 0.00 0.00 2.92
2749 8285 3.430453 TCTGTTTATTTTGCTCCTGGGG 58.570 45.455 0.00 0.00 0.00 4.96
2776 8312 5.106396 ACTGTTCATGCTTGTAAGATTCAGC 60.106 40.000 0.00 0.00 0.00 4.26
2779 8315 8.507249 ACTTTACTGTTCATGCTTGTAAGATTC 58.493 33.333 0.00 0.00 0.00 2.52
2801 8337 8.896722 TGATCTTAGAAACCTACCTCTACTTT 57.103 34.615 0.00 0.00 0.00 2.66
2814 8350 8.668353 TGCACATACTGAATTGATCTTAGAAAC 58.332 33.333 0.00 0.00 0.00 2.78
2867 8403 7.797038 AATCTTTGTTAGTCAACGTACCTTT 57.203 32.000 0.00 0.00 37.48 3.11
2980 8516 6.949352 AATGAGCACAGGTAATCAATAAGG 57.051 37.500 0.00 0.00 0.00 2.69
3203 8739 1.470996 GGAACACCAATGCCAGCCAA 61.471 55.000 0.00 0.00 0.00 4.52
3813 9349 0.528684 GGGGACGAATTCTCTGCTCG 60.529 60.000 3.52 0.00 38.53 5.03
3979 9515 4.770531 TCCAGTCTTATCTTCGAAACCTGA 59.229 41.667 0.00 0.00 0.00 3.86
4163 9700 6.010850 TCTCTCTAAGTTAGTCAAGGCTCAA 58.989 40.000 9.71 0.00 0.00 3.02
4276 9814 5.431765 AGGTAACCTGTCAGCTGAATATTG 58.568 41.667 20.19 8.13 29.57 1.90
4298 9836 5.606348 AGGACAGGCTCATAGTCTAAAAG 57.394 43.478 3.15 0.00 32.98 2.27
4370 9908 3.231160 GCAAAATAACAACCGGAAGACG 58.769 45.455 9.46 0.00 43.80 4.18
4475 10014 5.704888 AGACTCTACAAGATGTTTCACGAG 58.295 41.667 0.00 0.00 0.00 4.18
4476 10015 5.707242 AGACTCTACAAGATGTTTCACGA 57.293 39.130 0.00 0.00 0.00 4.35
4477 10016 6.642950 AGAAAGACTCTACAAGATGTTTCACG 59.357 38.462 0.00 0.00 30.22 4.35
4782 10476 1.180029 GGAGGACGTAGGCACAGTAA 58.820 55.000 0.00 0.00 0.00 2.24
4817 10511 6.618287 TTAAAACTGCGATTCCCATCATAG 57.382 37.500 0.00 0.00 0.00 2.23
4834 10528 6.589907 TCCCTCGACGGTATAGTTTTTAAAAC 59.410 38.462 12.16 12.16 0.00 2.43
4873 10567 4.448060 CACTCGTTTTCTTCTTCCACTACC 59.552 45.833 0.00 0.00 0.00 3.18
4878 10572 2.872245 CTGCACTCGTTTTCTTCTTCCA 59.128 45.455 0.00 0.00 0.00 3.53
4983 10677 2.481185 ACACCGGCAAATTAGTAACGTG 59.519 45.455 0.00 0.00 0.00 4.49
4984 10678 2.481185 CACACCGGCAAATTAGTAACGT 59.519 45.455 0.00 0.00 0.00 3.99
5024 10721 5.391256 GGGGTCTTCCTCCTTTTCTAAAAA 58.609 41.667 0.00 0.00 35.33 1.94
5025 10722 4.994282 GGGGTCTTCCTCCTTTTCTAAAA 58.006 43.478 0.00 0.00 35.33 1.52
5026 10723 4.652679 GGGGTCTTCCTCCTTTTCTAAA 57.347 45.455 0.00 0.00 35.33 1.85
5039 10736 3.787001 CAGAGGCCGGGGGTCTTC 61.787 72.222 2.18 0.00 38.01 2.87
5044 10741 4.447342 AAATGCAGAGGCCGGGGG 62.447 66.667 2.18 0.00 40.13 5.40
5045 10742 3.142838 CAAATGCAGAGGCCGGGG 61.143 66.667 2.18 0.00 40.13 5.73
5046 10743 2.916527 ATCCAAATGCAGAGGCCGGG 62.917 60.000 2.18 0.00 40.13 5.73
5047 10744 1.454479 ATCCAAATGCAGAGGCCGG 60.454 57.895 0.00 0.00 40.13 6.13
5048 10745 0.749091 TCATCCAAATGCAGAGGCCG 60.749 55.000 0.00 0.00 40.13 6.13
5049 10746 1.340248 CATCATCCAAATGCAGAGGCC 59.660 52.381 0.00 0.00 40.13 5.19
5050 10747 1.269621 GCATCATCCAAATGCAGAGGC 60.270 52.381 3.35 0.00 46.93 4.70
5051 10748 2.795175 GCATCATCCAAATGCAGAGG 57.205 50.000 3.35 0.00 46.93 3.69
5057 10754 2.869801 GGTTGCATGCATCATCCAAATG 59.130 45.455 23.37 0.00 0.00 2.32
5058 10755 2.502130 TGGTTGCATGCATCATCCAAAT 59.498 40.909 23.37 0.00 32.19 2.32
5059 10756 1.900486 TGGTTGCATGCATCATCCAAA 59.100 42.857 23.37 0.00 32.19 3.28
5060 10757 1.558233 TGGTTGCATGCATCATCCAA 58.442 45.000 23.37 0.58 32.19 3.53
5061 10758 1.783071 ATGGTTGCATGCATCATCCA 58.217 45.000 23.37 24.57 37.61 3.41
5062 10759 2.902705 AATGGTTGCATGCATCATCC 57.097 45.000 26.63 22.52 0.00 3.51
5063 10760 6.854496 AATAAAATGGTTGCATGCATCATC 57.146 33.333 26.63 14.63 0.00 2.92
5064 10761 8.911918 ATTAATAAAATGGTTGCATGCATCAT 57.088 26.923 23.37 23.26 0.00 2.45
5065 10762 8.734218 AATTAATAAAATGGTTGCATGCATCA 57.266 26.923 23.37 22.09 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.