AutoCloner

Multiple sequence alignment - TraesCS2B01G217900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G217900	chr2B	100.000	3484	0	0	1	3484	206687731	206691214	0.000000e+00	6434.0
1	TraesCS2B01G217900	chr2B	79.592	735	90	35	1682	2387	206687916	206687213	4.070000e-129	472.0
2	TraesCS2B01G217900	chr2B	81.735	438	63	12	1000	1432	206688525	206688100	1.990000e-92	350.0
3	TraesCS2B01G217900	chr2B	81.881	436	60	13	373	795	206689159	206688730	1.990000e-92	350.0
4	TraesCS2B01G217900	chr2B	89.266	177	16	1	1458	1631	206688110	206687934	5.850000e-53	219.0
5	TraesCS2B01G217900	chr2B	89.266	177	16	1	204	380	206689361	206689188	5.850000e-53	219.0
6	TraesCS2B01G217900	chr2B	89.441	161	13	2	2472	2632	206686977	206686821	2.120000e-47	200.0
7	TraesCS2B01G217900	chr2D	97.138	1642	43	2	864	2502	147157380	147159020	0.000000e+00	2769.0
8	TraesCS2B01G217900	chr2D	96.514	1664	54	2	864	2524	146768091	146769753	0.000000e+00	2748.0
9	TraesCS2B01G217900	chr2D	98.158	923	16	1	2563	3484	146469952	146470874	0.000000e+00	1609.0
10	TraesCS2B01G217900	chr2D	93.265	1069	54	3	1459	2521	146468592	146469648	0.000000e+00	1559.0
11	TraesCS2B01G217900	chr2D	98.333	780	12	1	2706	3484	146790886	146791665	0.000000e+00	1367.0
12	TraesCS2B01G217900	chr2D	97.823	781	15	2	2706	3484	147159622	147160402	0.000000e+00	1347.0
13	TraesCS2B01G217900	chr2D	94.382	801	31	5	1	796	146467024	146467815	0.000000e+00	1218.0
14	TraesCS2B01G217900	chr2D	95.840	601	23	2	841	1440	146468010	146468609	0.000000e+00	970.0
15	TraesCS2B01G217900	chr2D	81.416	791	103	24	1682	2451	146467203	146466436	1.070000e-169	606.0
16	TraesCS2B01G217900	chr2D	80.708	819	106	28	11	795	146468969	146468169	1.080000e-164	590.0
17	TraesCS2B01G217900	chr2D	93.478	276	12	4	2522	2791	146790614	146790889	4.190000e-109	405.0
18	TraesCS2B01G217900	chr2D	82.339	436	58	13	373	795	147157944	147157515	9.190000e-96	361.0
19	TraesCS2B01G217900	chr2D	82.110	436	59	14	373	795	146768655	146768226	4.280000e-94	355.0
20	TraesCS2B01G217900	chr2D	97.537	203	2	3	2592	2791	147159423	147159625	9.260000e-91	344.0
21	TraesCS2B01G217900	chr2D	80.761	447	69	14	1000	1440	146467814	146467379	2.000000e-87	333.0
22	TraesCS2B01G217900	chr2D	81.871	342	28	17	2317	2632	146466341	146466008	1.240000e-64	257.0
23	TraesCS2B01G217900	chr2D	88.701	177	17	1	204	380	147158146	147157973	2.720000e-51	213.0
24	TraesCS2B01G217900	chr2D	88.136	177	18	1	204	380	146768857	146768684	1.270000e-49	207.0
25	TraesCS2B01G217900	chr2D	87.006	177	20	1	1458	1631	146467397	146467221	2.740000e-46	196.0
26	TraesCS2B01G217900	chr2A	97.882	897	17	1	2588	3484	155751010	155750116	0.000000e+00	1550.0
27	TraesCS2B01G217900	chr2A	93.089	984	53	2	1459	2439	155752226	155751255	0.000000e+00	1426.0
28	TraesCS2B01G217900	chr2A	93.790	628	32	3	174	797	155753812	155753188	0.000000e+00	937.0
29	TraesCS2B01G217900	chr2A	96.234	478	18	0	969	1446	155752680	155752203	0.000000e+00	784.0
30	TraesCS2B01G217900	chr2A	79.976	819	112	30	11	795	155751849	155752649	1.090000e-154	556.0
31	TraesCS2B01G217900	chr2A	80.685	409	67	11	1037	1440	155753223	155753624	1.210000e-79	307.0
32	TraesCS2B01G217900	chr2A	84.295	312	35	7	1690	1988	155762935	155763245	3.400000e-75	292.0
33	TraesCS2B01G217900	chr2A	93.820	178	8	1	1	178	155763109	155762935	7.410000e-67	265.0
34	TraesCS2B01G217900	chr2A	76.782	491	70	24	2016	2480	155764068	155764540	5.810000e-58	235.0
35	TraesCS2B01G217900	chr2A	88.136	177	18	1	1458	1631	155753606	155753782	1.270000e-49	207.0
36	TraesCS2B01G217900	chr2A	89.441	161	13	3	2314	2473	155764599	155764756	2.120000e-47	200.0
37	TraesCS2B01G217900	chr2A	94.737	57	3	0	841	897	155752740	155752684	4.790000e-14	89.8
38	TraesCS2B01G217900	chr2A	96.226	53	2	0	2496	2548	155751257	155751205	1.720000e-13	87.9
39	TraesCS2B01G217900	chr2A	96.154	52	2	0	2472	2523	155764779	155764830	6.200000e-13	86.1
40	TraesCS2B01G217900	chr5D	95.664	738	31	1	2747	3484	178473563	178472827	0.000000e+00	1184.0
41	TraesCS2B01G217900	chrUn	92.548	577	26	5	2908	3484	183942449	183943008	0.000000e+00	811.0
42	TraesCS2B01G217900	chr4B	92.982	513	22	2	2972	3484	339464979	339465477	0.000000e+00	736.0
43	TraesCS2B01G217900	chr4B	93.429	350	22	1	2632	2980	339454339	339454688	5.150000e-143	518.0
44	TraesCS2B01G217900	chr3D	83.784	481	57	17	2635	3102	269947047	269946575	1.480000e-118	436.0
45	TraesCS2B01G217900	chr3D	76.650	394	64	15	1013	1397	321196109	321195735	3.550000e-45	193.0
46	TraesCS2B01G217900	chr3B	93.455	275	18	0	2632	2906	763194495	763194221	3.240000e-110	409.0
47	TraesCS2B01G217900	chr7A	82.716	486	51	17	2635	3102	700601565	700602035	5.420000e-108	401.0
48	TraesCS2B01G217900	chr7A	94.156	154	9	0	3319	3472	700602504	700602657	5.810000e-58	235.0
49	TraesCS2B01G217900	chr7A	90.789	152	12	1	3165	3316	383956126	383956275	5.900000e-48	202.0
50	TraesCS2B01G217900	chr6D	77.803	446	76	15	344	782	151082175	151082604	1.610000e-63	254.0
51	TraesCS2B01G217900	chr3A	91.566	166	13	1	3319	3484	730653566	730653730	9.730000e-56	228.0
52	TraesCS2B01G217900	chr1D	93.023	43	3	0	1072	1114	443379024	443378982	2.900000e-06	63.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G217900	chr2B	206687731	206691214	3483	False	6434.000000	6434	100.000000	1	3484	1	chr2B.!!$F1	3483
1	TraesCS2B01G217900	chr2B	206686821	206689361	2540	True	301.666667	472	85.196833	204	2632	6	chr2B.!!$R1	2428
2	TraesCS2B01G217900	chr2D	146768091	146769753	1662	False	2748.000000	2748	96.514000	864	2524	1	chr2D.!!$F1	1660
3	TraesCS2B01G217900	chr2D	147157380	147160402	3022	False	1486.666667	2769	97.499333	864	3484	3	chr2D.!!$F4	2620
4	TraesCS2B01G217900	chr2D	146467024	146470874	3850	False	1339.000000	1609	95.411250	1	3484	4	chr2D.!!$F2	3483
5	TraesCS2B01G217900	chr2D	146790614	146791665	1051	False	886.000000	1367	95.905500	2522	3484	2	chr2D.!!$F3	962
6	TraesCS2B01G217900	chr2D	146466008	146468969	2961	True	396.400000	606	82.352400	11	2632	5	chr2D.!!$R1	2621
7	TraesCS2B01G217900	chr2D	147157515	147158146	631	True	287.000000	361	85.520000	204	795	2	chr2D.!!$R3	591
8	TraesCS2B01G217900	chr2D	146768226	146768857	631	True	281.000000	355	85.123000	204	795	2	chr2D.!!$R2	591
9	TraesCS2B01G217900	chr2A	155750116	155753812	3696	True	812.450000	1550	95.326333	174	3484	6	chr2A.!!$R2	3310
10	TraesCS2B01G217900	chr2A	155751849	155753782	1933	False	356.666667	556	82.932333	11	1631	3	chr2A.!!$F1	1620
11	TraesCS2B01G217900	chr2A	155762935	155764830	1895	False	203.275000	292	86.668000	1690	2523	4	chr2A.!!$F2	833
12	TraesCS2B01G217900	chr5D	178472827	178473563	736	True	1184.000000	1184	95.664000	2747	3484	1	chr5D.!!$R1	737
13	TraesCS2B01G217900	chrUn	183942449	183943008	559	False	811.000000	811	92.548000	2908	3484	1	chrUn.!!$F1	576
14	TraesCS2B01G217900	chr7A	700601565	700602657	1092	False	318.000000	401	88.436000	2635	3472	2	chr7A.!!$F2	837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
834	1493	0.320697	GCCTGGACACGTAGGTCTTT	59.679	55.0	0.0	0.0	37.91	2.52	F
1657	2971	0.687354	GATCACGGTCCCTGCCATAT	59.313	55.0	0.0	0.0	0.00	1.78	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1659	2973	0.311165	CGGAAGATAGTCGTGCGGAT	59.689	55.000	0.0	0.0	36.26	4.18	R
2557	5209	3.140144	ACTGGATTGAAAAGTTCAGGGGA	59.860	43.478	0.0	0.0	41.38	4.81	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
29	30	0.668096	CGACGTTTCCGGTCCAATGA	60.668	55.000	0.00	0.00	38.78	2.57
55	56	1.526686	CAGCCAGTGCAGGTTGTCA	60.527	57.895	1.18	0.00	41.13	3.58
73	74	2.860735	GTCATGTAGCCTAACGAAGCAG	59.139	50.000	0.00	0.00	0.00	4.24
74	75	1.594862	CATGTAGCCTAACGAAGCAGC	59.405	52.381	0.00	0.00	0.00	5.25
75	76	0.895530	TGTAGCCTAACGAAGCAGCT	59.104	50.000	0.00	0.00	37.58	4.24
95	96	1.827344	TGTGAGGGTGTCTGCTCATAG	59.173	52.381	0.00	0.00	0.00	2.23
97	98	2.234908	GTGAGGGTGTCTGCTCATAGTT	59.765	50.000	0.00	0.00	0.00	2.24
99	100	3.701542	TGAGGGTGTCTGCTCATAGTTAG	59.298	47.826	0.00	0.00	0.00	2.34
100	101	3.034635	AGGGTGTCTGCTCATAGTTAGG	58.965	50.000	0.00	0.00	0.00	2.69
101	102	3.031736	GGGTGTCTGCTCATAGTTAGGA	58.968	50.000	0.00	0.00	0.00	2.94
102	103	3.451178	GGGTGTCTGCTCATAGTTAGGAA	59.549	47.826	0.00	0.00	0.00	3.36
103	104	4.081087	GGGTGTCTGCTCATAGTTAGGAAA	60.081	45.833	0.00	0.00	0.00	3.13
350	372	2.244117	CTGATGGACGTGGAGGTGGG	62.244	65.000	0.00	0.00	0.00	4.61
531	589	3.623703	TGGTACCTAGACGATGCAGTAA	58.376	45.455	14.36	0.00	0.00	2.24
532	590	3.630769	TGGTACCTAGACGATGCAGTAAG	59.369	47.826	14.36	0.00	0.00	2.34
533	591	3.004524	GGTACCTAGACGATGCAGTAAGG	59.995	52.174	4.06	0.00	34.97	2.69
796	865	2.053747	AGGAGGATGGGGTGTTTGTA	57.946	50.000	0.00	0.00	0.00	2.41
797	866	1.916181	AGGAGGATGGGGTGTTTGTAG	59.084	52.381	0.00	0.00	0.00	2.74
799	868	2.841881	GGAGGATGGGGTGTTTGTAGTA	59.158	50.000	0.00	0.00	0.00	1.82
800	869	3.370209	GGAGGATGGGGTGTTTGTAGTAC	60.370	52.174	0.00	0.00	0.00	2.73
823	1482	2.875823	TACCCTGGAGGCCTGGACA	61.876	63.158	12.00	5.46	44.09	4.02
824	1483	3.721706	CCCTGGAGGCCTGGACAC	61.722	72.222	12.00	0.00	44.09	3.67
825	1484	4.087892	CCTGGAGGCCTGGACACG	62.088	72.222	12.00	0.00	44.09	4.49
826	1485	3.314331	CTGGAGGCCTGGACACGT	61.314	66.667	12.00	0.00	0.00	4.49
827	1486	1.982395	CTGGAGGCCTGGACACGTA	60.982	63.158	12.00	0.00	0.00	3.57
828	1487	1.949847	CTGGAGGCCTGGACACGTAG	61.950	65.000	12.00	0.00	0.00	3.51
829	1488	2.722201	GGAGGCCTGGACACGTAGG	61.722	68.421	12.00	0.00	37.14	3.18
830	1489	1.982938	GAGGCCTGGACACGTAGGT	60.983	63.158	12.00	0.00	36.44	3.08
831	1490	1.946475	GAGGCCTGGACACGTAGGTC	61.946	65.000	12.00	0.00	38.99	3.85
832	1491	1.982938	GGCCTGGACACGTAGGTCT	60.983	63.158	0.00	0.00	35.80	3.85
833	1492	1.542187	GGCCTGGACACGTAGGTCTT	61.542	60.000	0.00	0.00	35.80	3.01
834	1493	0.320697	GCCTGGACACGTAGGTCTTT	59.679	55.000	0.00	0.00	37.91	2.52
835	1494	1.270678	GCCTGGACACGTAGGTCTTTT	60.271	52.381	0.00	0.00	37.91	2.27
836	1495	2.809299	GCCTGGACACGTAGGTCTTTTT	60.809	50.000	0.00	0.00	37.91	1.94
861	1520	1.234821	TGTGCAGGGTTGTTCGAATC	58.765	50.000	0.00	0.00	0.00	2.52
924	1583	4.032558	GCGGTTGTAATAACTGACTAGTGC	59.967	45.833	0.00	0.00	37.19	4.40
938	1597	7.151308	ACTGACTAGTGCATATCTCATTTAGC	58.849	38.462	0.00	0.00	35.34	3.09
951	1610	5.647589	TCTCATTTAGCTACAACGAATCGT	58.352	37.500	0.96	0.96	43.97	3.73
1086	2382	4.129737	ATCTGCCGGACGACGTGG	62.130	66.667	5.05	1.89	42.24	4.94
1250	2546	2.041244	GAACACAAAATCGAACGCCAC	58.959	47.619	0.00	0.00	0.00	5.01
1317	2616	1.289380	GTCTTCGACTTCACCGGCT	59.711	57.895	0.00	0.00	0.00	5.52
1450	2749	6.151985	TGGCAACGTCATCCTTATTATTTTGT	59.848	34.615	0.00	0.00	42.51	2.83
1654	2968	2.606213	TGATCACGGTCCCTGCCA	60.606	61.111	0.00	0.00	0.00	4.92
1655	2969	1.976132	CTGATCACGGTCCCTGCCAT	61.976	60.000	0.00	0.00	0.00	4.40
1656	2970	0.689412	TGATCACGGTCCCTGCCATA	60.689	55.000	0.00	0.00	0.00	2.74
1657	2971	0.687354	GATCACGGTCCCTGCCATAT	59.313	55.000	0.00	0.00	0.00	1.78
1658	2972	1.072331	GATCACGGTCCCTGCCATATT	59.928	52.381	0.00	0.00	0.00	1.28
1659	2973	1.796017	TCACGGTCCCTGCCATATTA	58.204	50.000	0.00	0.00	0.00	0.98
1660	2974	2.334977	TCACGGTCCCTGCCATATTAT	58.665	47.619	0.00	0.00	0.00	1.28
1661	2975	2.301870	TCACGGTCCCTGCCATATTATC	59.698	50.000	0.00	0.00	0.00	1.75
1662	2976	1.628846	ACGGTCCCTGCCATATTATCC	59.371	52.381	0.00	0.00	0.00	2.59
1663	2977	1.405526	CGGTCCCTGCCATATTATCCG	60.406	57.143	0.00	0.00	0.00	4.18
1664	2978	1.679032	GGTCCCTGCCATATTATCCGC	60.679	57.143	0.00	0.00	0.00	5.54
1665	2979	1.003118	GTCCCTGCCATATTATCCGCA	59.997	52.381	0.00	0.00	0.00	5.69
2021	4145	0.109153	CGATGGAGGCATGGATGGAA	59.891	55.000	0.00	0.00	0.00	3.53
2126	4253	2.202892	GGATTCGACCTGCGGACC	60.203	66.667	0.00	0.00	41.33	4.46
2264	4394	1.301716	CACCGTTGCCTGTGCTACT	60.302	57.895	0.00	0.00	40.47	2.57
2397	4996	5.584649	CGTTTCTATTGCCTGGAGTGAATTA	59.415	40.000	0.00	0.00	0.00	1.40
2419	5018	3.978610	TGGTAGTAGTCTTTCTCCTCCC	58.021	50.000	0.00	0.00	0.00	4.30
2420	5019	3.298619	GGTAGTAGTCTTTCTCCTCCCC	58.701	54.545	0.00	0.00	0.00	4.81
2453	5059	6.153510	AGTGACATTCTATGCAGAGACAAGTA	59.846	38.462	11.33	0.00	30.73	2.24
2884	5940	9.759259	GCTTTTGCCAAATTATTCTGTAAAATC	57.241	29.630	0.00	0.00	40.15	2.17
3016	6081	3.066203	GGTTCGTTTGGTGTCAATGAGTT	59.934	43.478	0.00	0.00	32.28	3.01
3427	6755	3.756434	TCATAGGTAGGTGCTTTGTTTGC	59.244	43.478	0.00	0.00	0.00	3.68

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
55	56	1.482593	AGCTGCTTCGTTAGGCTACAT	59.517	47.619	0.00	0.00	0.00	2.29
73	74	1.375268	GAGCAGACACCCTCACAGC	60.375	63.158	0.00	0.00	0.00	4.40
74	75	0.612229	ATGAGCAGACACCCTCACAG	59.388	55.000	0.00	0.00	40.55	3.66
75	76	1.827344	CTATGAGCAGACACCCTCACA	59.173	52.381	0.00	0.00	40.55	3.58
95	96	1.082679	GCGCCTCCGAGTTTCCTAAC	61.083	60.000	0.00	0.00	36.29	2.34
97	98	2.718073	GGCGCCTCCGAGTTTCCTA	61.718	63.158	22.15	0.00	36.29	2.94
258	280	3.437867	CTCGCGAGGGCTGTATCT	58.562	61.111	28.40	0.00	36.88	1.98
350	372	2.579787	CCGTCCTCGTGATCGCAC	60.580	66.667	7.12	0.00	41.67	5.34
694	755	0.823769	TCGTGGAGATCCTCATCCGG	60.824	60.000	0.00	0.00	38.52	5.14
724	787	3.161450	GCCCTCCCGCATCTACCA	61.161	66.667	0.00	0.00	0.00	3.25
796	865	1.907255	GCCTCCAGGGTACAAAGTACT	59.093	52.381	7.19	0.00	37.43	2.73
797	866	1.065636	GGCCTCCAGGGTACAAAGTAC	60.066	57.143	0.00	0.00	37.43	2.73
799	868	0.475828	AGGCCTCCAGGGTACAAAGT	60.476	55.000	0.00	0.00	37.43	2.66
800	869	0.035056	CAGGCCTCCAGGGTACAAAG	60.035	60.000	0.00	0.00	37.43	2.77
838	1497	1.819288	TCGAACAACCCTGCACAAAAA	59.181	42.857	0.00	0.00	0.00	1.94
839	1498	1.464734	TCGAACAACCCTGCACAAAA	58.535	45.000	0.00	0.00	0.00	2.44
924	1583	8.368857	CGATTCGTTGTAGCTAAATGAGATATG	58.631	37.037	0.00	0.00	0.00	1.78
938	1597	2.281762	GCCTAAGCACGATTCGTTGTAG	59.718	50.000	9.40	10.51	38.32	2.74
1219	2515	0.865111	TTTGTGTTCAGCCGTGATCG	59.135	50.000	0.00	0.00	30.85	3.69
1317	2616	4.735132	CGTTCTCTGCGGGCCGAA	62.735	66.667	33.44	21.16	0.00	4.30
1450	2749	1.077068	GGTGGCCATTCGATTCCCA	60.077	57.895	9.72	0.00	0.00	4.37
1654	2968	5.448768	CGGAAGATAGTCGTGCGGATAATAT	60.449	44.000	0.00	0.00	36.26	1.28
1655	2969	4.142752	CGGAAGATAGTCGTGCGGATAATA	60.143	45.833	0.00	0.00	36.26	0.98
1656	2970	3.366070	CGGAAGATAGTCGTGCGGATAAT	60.366	47.826	0.00	0.00	36.26	1.28
1657	2971	2.031420	CGGAAGATAGTCGTGCGGATAA	60.031	50.000	0.00	0.00	36.26	1.75
1658	2972	1.534163	CGGAAGATAGTCGTGCGGATA	59.466	52.381	0.00	0.00	36.26	2.59
1659	2973	0.311165	CGGAAGATAGTCGTGCGGAT	59.689	55.000	0.00	0.00	36.26	4.18
1660	2974	1.725665	CGGAAGATAGTCGTGCGGA	59.274	57.895	0.00	0.00	36.26	5.54
1661	2975	4.303853	CGGAAGATAGTCGTGCGG	57.696	61.111	0.00	0.00	36.26	5.69
1662	2976	0.311165	ATCCGGAAGATAGTCGTGCG	59.689	55.000	9.01	0.45	39.10	5.34
1663	2977	2.034812	AGAATCCGGAAGATAGTCGTGC	59.965	50.000	9.01	0.00	33.66	5.34
1664	2978	3.992260	AGAATCCGGAAGATAGTCGTG	57.008	47.619	9.01	0.00	33.66	4.35
1665	2979	4.519730	CCTTAGAATCCGGAAGATAGTCGT	59.480	45.833	9.01	0.00	33.66	4.34
2021	4145	1.115930	AGTCTTCGAGCACCCACACT	61.116	55.000	0.00	0.00	0.00	3.55
2074	4198	1.632409	AGCTGATCCTTTCCTTGAGCA	59.368	47.619	0.00	0.00	0.00	4.26
2126	4253	3.601443	ATCTGGTTGGTCTCGAAGAAG	57.399	47.619	0.00	0.00	34.09	2.85
2264	4394	1.135915	ACCAGATGCGTGCAAACAAAA	59.864	42.857	0.00	0.00	0.00	2.44
2419	5018	4.095483	GCATAGAATGTCACTTGAACTGGG	59.905	45.833	0.00	0.00	0.00	4.45
2420	5019	4.696877	TGCATAGAATGTCACTTGAACTGG	59.303	41.667	0.00	0.00	0.00	4.00
2557	5209	3.140144	ACTGGATTGAAAAGTTCAGGGGA	59.860	43.478	0.00	0.00	41.38	4.81
2884	5940	8.318876	CGGTACTTTTTATGATTGTAGACGAAG	58.681	37.037	0.00	0.00	0.00	3.79

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.