Multiple sequence alignment - TraesCS2B01G217700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G217700 chr2B 100.000 7201 0 0 1 7201 206367652 206374852 0.000000e+00 13298.0
1 TraesCS2B01G217700 chr2B 100.000 1944 0 0 7602 9545 206375253 206377196 0.000000e+00 3591.0
2 TraesCS2B01G217700 chr2B 94.475 362 20 0 62 423 206358301 206357940 8.370000e-155 558.0
3 TraesCS2B01G217700 chr2B 84.943 352 42 10 77 423 525569629 525569284 7.100000e-91 346.0
4 TraesCS2B01G217700 chr2B 83.523 352 51 6 77 425 70819928 70820275 1.200000e-83 322.0
5 TraesCS2B01G217700 chr2B 100.000 96 0 0 3532 3627 206371278 206371183 2.740000e-40 178.0
6 TraesCS2B01G217700 chr2B 95.327 107 0 4 3532 3633 629108532 629108638 2.130000e-36 165.0
7 TraesCS2B01G217700 chr2A 97.877 3580 70 4 3625 7199 155946629 155943051 0.000000e+00 6185.0
8 TraesCS2B01G217700 chr2A 96.214 3117 57 17 447 3523 155949726 155946631 0.000000e+00 5046.0
9 TraesCS2B01G217700 chr2A 95.665 1038 31 5 7819 8851 155942607 155941579 0.000000e+00 1655.0
10 TraesCS2B01G217700 chr2A 92.612 582 24 7 8964 9545 155941581 155941019 0.000000e+00 819.0
11 TraesCS2B01G217700 chr2A 99.087 219 2 0 7602 7820 155942903 155942685 2.500000e-105 394.0
12 TraesCS2B01G217700 chr2D 99.011 2932 23 2 4253 7181 146304241 146307169 0.000000e+00 5249.0
13 TraesCS2B01G217700 chr2D 96.514 2123 35 15 422 2533 146300268 146302362 0.000000e+00 3474.0
14 TraesCS2B01G217700 chr2D 98.082 1251 14 4 7602 8851 146307505 146308746 0.000000e+00 2169.0
15 TraesCS2B01G217700 chr2D 98.822 1019 10 1 2535 3553 146302404 146303420 0.000000e+00 1814.0
16 TraesCS2B01G217700 chr2D 98.440 705 11 0 3606 4310 146303540 146304244 0.000000e+00 1242.0
17 TraesCS2B01G217700 chr2D 97.595 582 8 3 8964 9545 146308744 146309319 0.000000e+00 992.0
18 TraesCS2B01G217700 chr2D 95.122 123 4 2 8845 8966 2479547 2479668 9.780000e-45 193.0
19 TraesCS2B01G217700 chrUn 100.000 412 0 0 2766 3177 477508186 477507775 0.000000e+00 761.0
20 TraesCS2B01G217700 chr5D 75.315 1033 201 28 6167 7175 320311164 320310162 6.800000e-121 446.0
21 TraesCS2B01G217700 chr5D 77.949 585 109 16 4575 5142 320312794 320312213 1.970000e-91 348.0
22 TraesCS2B01G217700 chr5A 75.097 1036 204 28 6164 7175 414165295 414166300 1.470000e-117 435.0
23 TraesCS2B01G217700 chr5A 86.921 367 42 6 60 423 2313341 2313704 3.210000e-109 407.0
24 TraesCS2B01G217700 chr5A 77.949 585 109 16 4575 5142 414163669 414164250 1.970000e-91 348.0
25 TraesCS2B01G217700 chr5B 86.005 393 49 3 35 421 268798375 268798767 5.330000e-112 416.0
26 TraesCS2B01G217700 chr5B 77.949 585 107 17 4575 5142 371191354 371190775 7.100000e-91 346.0
27 TraesCS2B01G217700 chr5B 84.046 351 48 6 77 423 467388733 467388387 1.990000e-86 331.0
28 TraesCS2B01G217700 chr5B 83.714 350 51 6 77 423 584700299 584699953 9.240000e-85 326.0
29 TraesCS2B01G217700 chr5B 95.122 123 4 2 8845 8966 231163962 231164083 9.780000e-45 193.0
30 TraesCS2B01G217700 chr6B 84.066 364 58 0 60 423 309691683 309691320 1.530000e-92 351.0
31 TraesCS2B01G217700 chr6B 90.310 258 25 0 35 292 280348172 280348429 1.190000e-88 339.0
32 TraesCS2B01G217700 chr6B 96.667 120 4 0 8846 8965 618132541 618132660 5.850000e-47 200.0
33 TraesCS2B01G217700 chr6B 95.082 122 6 0 8845 8966 213675106 213674985 9.780000e-45 193.0
34 TraesCS2B01G217700 chr7D 81.746 252 42 4 8287 8536 165728447 165728198 3.490000e-49 207.0
35 TraesCS2B01G217700 chr1B 97.500 120 3 0 8846 8965 645731934 645732053 1.260000e-48 206.0
36 TraesCS2B01G217700 chr1B 94.309 123 7 0 8846 8968 115962662 115962784 1.270000e-43 189.0
37 TraesCS2B01G217700 chr1B 96.262 107 1 2 3531 3634 629828610 629828504 1.270000e-38 172.0
38 TraesCS2B01G217700 chr1B 96.117 103 1 1 3533 3632 167995203 167995305 2.130000e-36 165.0
39 TraesCS2B01G217700 chr1B 92.308 117 5 4 3521 3634 157754619 157754504 7.670000e-36 163.0
40 TraesCS2B01G217700 chr1B 88.889 99 6 5 3625 3720 85442453 85442549 6.060000e-22 117.0
41 TraesCS2B01G217700 chr1B 94.872 39 1 1 2497 2534 328127451 328127489 1.040000e-04 60.2
42 TraesCS2B01G217700 chr6D 95.902 122 5 0 8846 8967 147675689 147675568 2.100000e-46 198.0
43 TraesCS2B01G217700 chr7B 80.859 256 43 6 8284 8536 129655100 129654848 7.560000e-46 196.0
44 TraesCS2B01G217700 chr3B 95.868 121 5 0 8846 8966 222320793 222320913 7.560000e-46 196.0
45 TraesCS2B01G217700 chr3B 91.045 67 5 1 3625 3690 753727599 753727665 1.320000e-13 89.8
46 TraesCS2B01G217700 chr1D 95.833 120 5 0 8846 8965 408872400 408872519 2.720000e-45 195.0
47 TraesCS2B01G217700 chr1D 97.895 95 2 0 3532 3626 276768786 276768880 2.130000e-36 165.0
48 TraesCS2B01G217700 chr1D 86.869 99 8 5 3625 3720 53261331 53261427 1.310000e-18 106.0
49 TraesCS2B01G217700 chr1D 100.000 28 0 0 3721 3748 309979806 309979779 1.700000e-02 52.8
50 TraesCS2B01G217700 chr7A 80.080 251 48 2 8287 8536 167273527 167273278 1.640000e-42 185.0
51 TraesCS2B01G217700 chr4B 94.545 110 3 3 3532 3638 477147245 477147136 5.930000e-37 167.0
52 TraesCS2B01G217700 chr4B 88.421 95 8 3 3625 3717 398558405 398558498 2.820000e-20 111.0
53 TraesCS2B01G217700 chr4A 96.117 103 1 2 3533 3632 650040978 650040876 2.130000e-36 165.0
54 TraesCS2B01G217700 chr4A 87.368 95 9 3 3625 3717 150228834 150228927 1.310000e-18 106.0
55 TraesCS2B01G217700 chr3D 92.920 113 3 3 3532 3640 228297176 228297065 9.920000e-35 159.0
56 TraesCS2B01G217700 chr3D 96.970 33 1 0 3161 3193 609075571 609075539 1.000000e-03 56.5
57 TraesCS2B01G217700 chr1A 89.109 101 6 5 3625 3721 53036180 53036279 4.680000e-23 121.0
58 TraesCS2B01G217700 chr4D 85.567 97 11 3 3626 3720 322675153 322675058 2.190000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G217700 chr2B 206367652 206377196 9544 False 8444.5 13298 100.000000 1 9545 2 chr2B.!!$F3 9544
1 TraesCS2B01G217700 chr2A 155941019 155949726 8707 True 2819.8 6185 96.291000 447 9545 5 chr2A.!!$R1 9098
2 TraesCS2B01G217700 chr2D 146300268 146309319 9051 False 2490.0 5249 98.077333 422 9545 6 chr2D.!!$F2 9123
3 TraesCS2B01G217700 chr5D 320310162 320312794 2632 True 397.0 446 76.632000 4575 7175 2 chr5D.!!$R1 2600
4 TraesCS2B01G217700 chr5A 414163669 414166300 2631 False 391.5 435 76.523000 4575 7175 2 chr5A.!!$F2 2600
5 TraesCS2B01G217700 chr5B 371190775 371191354 579 True 346.0 346 77.949000 4575 5142 1 chr5B.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 359 0.109723 CGAGGGGGTCCTTTTTGTCA 59.890 55.000 0.00 0.0 45.05 3.58 F
400 401 0.252148 TCTGGCAATTCCAATGGGCA 60.252 50.000 0.00 3.1 46.01 5.36 F
408 409 0.482446 TTCCAATGGGCAAGTGGTCT 59.518 50.000 8.44 0.0 33.88 3.85 F
409 410 0.482446 TCCAATGGGCAAGTGGTCTT 59.518 50.000 8.44 0.0 33.88 3.01 F
1275 1284 1.001020 TGCCATGGCTCGGTTTCAT 60.001 52.632 35.53 0.0 42.51 2.57 F
3547 3623 0.679002 CGTCTACTCCCTCCGTTCCA 60.679 60.000 0.00 0.0 0.00 3.53 F
4247 4391 3.203716 GAACGAGGAAGGTGAAAGTGTT 58.796 45.455 0.00 0.0 0.00 3.32 F
5636 5941 5.733109 GCGAGGTGACGAAATTAGATTTTTC 59.267 40.000 0.00 0.0 35.09 2.29 F
7199 7569 0.630673 TACTTTGCCTGGCCCATGAT 59.369 50.000 17.53 0.0 0.00 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 1866 1.467875 CAAATACTCTCGACTCGGCG 58.532 55.000 0.00 0.00 0.00 6.46 R
1960 1976 2.924757 ATCCGTGATCATGTCAGCAT 57.075 45.000 13.81 0.00 37.56 3.79 R
1998 2014 3.447586 TGACCTAGTACAGCATTCCTCAC 59.552 47.826 0.00 0.00 0.00 3.51 R
2771 2830 6.023357 TGCATTAACAGCATTTCTTTAGCA 57.977 33.333 0.57 0.00 37.02 3.49 R
3610 3686 1.355381 TGTACTACTCCCTCCGTTCCA 59.645 52.381 0.00 0.00 0.00 3.53 R
5008 5231 4.392047 CCCAAGCAGCATCTGACATAATA 58.608 43.478 0.00 0.00 32.44 0.98 R
5934 6268 4.901849 TGGGTTTTCCAATATTTGTGTCCA 59.098 37.500 0.00 0.00 43.84 4.02 R
7792 8162 5.348451 GGTTAAAACAGCATGCATAACAAGG 59.652 40.000 21.98 1.03 42.53 3.61 R
8851 9305 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.071874 ACTTTCGAAGCATGGGAATCA 57.928 42.857 0.00 0.00 0.00 2.57
21 22 3.420893 ACTTTCGAAGCATGGGAATCAA 58.579 40.909 0.00 0.00 0.00 2.57
22 23 3.191371 ACTTTCGAAGCATGGGAATCAAC 59.809 43.478 0.00 0.00 0.00 3.18
23 24 1.368641 TCGAAGCATGGGAATCAACG 58.631 50.000 0.00 0.00 0.00 4.10
24 25 0.378257 CGAAGCATGGGAATCAACGG 59.622 55.000 0.00 0.00 0.00 4.44
25 26 1.750193 GAAGCATGGGAATCAACGGA 58.250 50.000 0.00 0.00 0.00 4.69
26 27 1.672881 GAAGCATGGGAATCAACGGAG 59.327 52.381 0.00 0.00 0.00 4.63
41 42 3.880047 ACGGAGTTTGTATCGGAATCA 57.120 42.857 0.00 0.00 37.78 2.57
42 43 3.782046 ACGGAGTTTGTATCGGAATCAG 58.218 45.455 0.00 0.00 37.78 2.90
43 44 2.540101 CGGAGTTTGTATCGGAATCAGC 59.460 50.000 0.00 0.00 0.00 4.26
44 45 2.540101 GGAGTTTGTATCGGAATCAGCG 59.460 50.000 0.00 0.00 0.00 5.18
45 46 1.933853 AGTTTGTATCGGAATCAGCGC 59.066 47.619 0.00 0.00 0.00 5.92
46 47 1.003866 GTTTGTATCGGAATCAGCGCC 60.004 52.381 2.29 0.00 0.00 6.53
48 49 2.355837 TATCGGAATCAGCGCCGC 60.356 61.111 2.29 0.00 46.79 6.53
49 50 2.856628 TATCGGAATCAGCGCCGCT 61.857 57.895 5.39 5.39 46.79 5.52
50 51 2.749110 TATCGGAATCAGCGCCGCTC 62.749 60.000 9.54 0.00 46.79 5.03
52 53 4.537433 GGAATCAGCGCCGCTCCT 62.537 66.667 9.54 0.00 36.40 3.69
53 54 2.512515 GAATCAGCGCCGCTCCTT 60.513 61.111 9.54 5.34 36.40 3.36
54 55 2.045926 AATCAGCGCCGCTCCTTT 60.046 55.556 9.54 0.00 36.40 3.11
55 56 1.648467 GAATCAGCGCCGCTCCTTTT 61.648 55.000 9.54 0.00 36.40 2.27
56 57 1.648467 AATCAGCGCCGCTCCTTTTC 61.648 55.000 9.54 0.00 36.40 2.29
57 58 3.804193 CAGCGCCGCTCCTTTTCC 61.804 66.667 9.54 0.00 36.40 3.13
64 65 3.134127 GCTCCTTTTCCCGCGCAT 61.134 61.111 8.75 0.00 0.00 4.73
65 66 2.793946 CTCCTTTTCCCGCGCATG 59.206 61.111 8.75 0.00 0.00 4.06
66 67 3.401243 CTCCTTTTCCCGCGCATGC 62.401 63.158 7.91 7.91 37.91 4.06
67 68 3.746889 CCTTTTCCCGCGCATGCA 61.747 61.111 19.57 0.00 42.97 3.96
68 69 2.202518 CTTTTCCCGCGCATGCAG 60.203 61.111 19.57 10.88 42.97 4.41
69 70 4.418401 TTTTCCCGCGCATGCAGC 62.418 61.111 19.57 19.80 42.97 5.25
149 150 4.593864 GTCGGCCAGGGAGCGATC 62.594 72.222 2.24 0.00 0.00 3.69
162 163 4.637489 CGATCGCGCCAGGAGAGG 62.637 72.222 0.26 0.00 0.00 3.69
219 220 4.796231 CCGTTCCGTCCCAGCGAG 62.796 72.222 0.00 0.00 0.00 5.03
220 221 4.796231 CGTTCCGTCCCAGCGAGG 62.796 72.222 0.00 0.00 37.03 4.63
237 238 2.503375 GCGCACTGCAGCAATGTC 60.503 61.111 15.27 0.00 45.45 3.06
238 239 2.202260 CGCACTGCAGCAATGTCG 60.202 61.111 15.27 6.03 0.00 4.35
239 240 2.949106 GCACTGCAGCAATGTCGT 59.051 55.556 15.27 0.00 0.00 4.34
240 241 1.283793 GCACTGCAGCAATGTCGTT 59.716 52.632 15.27 0.00 0.00 3.85
241 242 0.318107 GCACTGCAGCAATGTCGTTT 60.318 50.000 15.27 0.00 0.00 3.60
242 243 1.678360 CACTGCAGCAATGTCGTTTC 58.322 50.000 15.27 0.00 0.00 2.78
243 244 0.235665 ACTGCAGCAATGTCGTTTCG 59.764 50.000 15.27 0.00 0.00 3.46
244 245 1.061799 CTGCAGCAATGTCGTTTCGC 61.062 55.000 0.00 0.00 0.00 4.70
245 246 1.797537 GCAGCAATGTCGTTTCGCC 60.798 57.895 0.00 0.00 0.00 5.54
246 247 1.868997 CAGCAATGTCGTTTCGCCT 59.131 52.632 0.00 0.00 0.00 5.52
247 248 0.453282 CAGCAATGTCGTTTCGCCTG 60.453 55.000 0.00 0.00 0.00 4.85
248 249 1.154225 GCAATGTCGTTTCGCCTGG 60.154 57.895 0.00 0.00 0.00 4.45
249 250 1.501741 CAATGTCGTTTCGCCTGGG 59.498 57.895 0.00 0.00 0.00 4.45
250 251 1.072505 AATGTCGTTTCGCCTGGGT 59.927 52.632 0.00 0.00 0.00 4.51
251 252 1.234615 AATGTCGTTTCGCCTGGGTG 61.235 55.000 0.00 0.00 0.00 4.61
252 253 3.047877 GTCGTTTCGCCTGGGTGG 61.048 66.667 0.00 0.00 39.35 4.61
274 275 4.514577 CTCCTGCGGTGGCGGTAG 62.515 72.222 0.00 0.00 44.37 3.18
321 322 4.961511 TGCCACGTGTCGCCTGTC 62.962 66.667 15.65 0.00 0.00 3.51
353 354 3.658422 GGGCGAGGGGGTCCTTTT 61.658 66.667 0.00 0.00 45.05 2.27
354 355 2.439245 GGCGAGGGGGTCCTTTTT 59.561 61.111 0.00 0.00 45.05 1.94
355 356 1.977009 GGCGAGGGGGTCCTTTTTG 60.977 63.158 0.00 0.00 45.05 2.44
356 357 1.228459 GCGAGGGGGTCCTTTTTGT 60.228 57.895 0.00 0.00 45.05 2.83
357 358 1.241990 GCGAGGGGGTCCTTTTTGTC 61.242 60.000 0.00 0.00 45.05 3.18
358 359 0.109723 CGAGGGGGTCCTTTTTGTCA 59.890 55.000 0.00 0.00 45.05 3.58
359 360 1.477923 CGAGGGGGTCCTTTTTGTCAA 60.478 52.381 0.00 0.00 45.05 3.18
360 361 2.673258 GAGGGGGTCCTTTTTGTCAAA 58.327 47.619 0.00 0.00 45.05 2.69
361 362 3.239449 GAGGGGGTCCTTTTTGTCAAAT 58.761 45.455 0.00 0.00 45.05 2.32
362 363 3.646162 GAGGGGGTCCTTTTTGTCAAATT 59.354 43.478 0.00 0.00 45.05 1.82
363 364 3.646162 AGGGGGTCCTTTTTGTCAAATTC 59.354 43.478 0.00 0.00 41.56 2.17
364 365 3.389656 GGGGGTCCTTTTTGTCAAATTCA 59.610 43.478 0.00 0.00 0.00 2.57
365 366 4.041567 GGGGGTCCTTTTTGTCAAATTCAT 59.958 41.667 0.00 0.00 0.00 2.57
366 367 5.237815 GGGGTCCTTTTTGTCAAATTCATC 58.762 41.667 0.00 0.00 0.00 2.92
367 368 5.012046 GGGGTCCTTTTTGTCAAATTCATCT 59.988 40.000 0.00 0.00 0.00 2.90
368 369 6.210584 GGGGTCCTTTTTGTCAAATTCATCTA 59.789 38.462 0.00 0.00 0.00 1.98
369 370 7.090808 GGGTCCTTTTTGTCAAATTCATCTAC 58.909 38.462 0.00 0.00 0.00 2.59
370 371 7.255801 GGGTCCTTTTTGTCAAATTCATCTACA 60.256 37.037 0.00 0.00 0.00 2.74
371 372 7.809806 GGTCCTTTTTGTCAAATTCATCTACAG 59.190 37.037 0.00 0.00 0.00 2.74
372 373 7.809806 GTCCTTTTTGTCAAATTCATCTACAGG 59.190 37.037 0.00 0.00 0.00 4.00
373 374 7.505585 TCCTTTTTGTCAAATTCATCTACAGGT 59.494 33.333 0.00 0.00 0.00 4.00
374 375 7.596248 CCTTTTTGTCAAATTCATCTACAGGTG 59.404 37.037 0.00 0.00 0.00 4.00
375 376 6.573664 TTTGTCAAATTCATCTACAGGTGG 57.426 37.500 0.00 0.00 0.00 4.61
376 377 5.241403 TGTCAAATTCATCTACAGGTGGT 57.759 39.130 0.00 0.00 0.00 4.16
377 378 5.245531 TGTCAAATTCATCTACAGGTGGTC 58.754 41.667 0.00 0.00 0.00 4.02
378 379 5.013079 TGTCAAATTCATCTACAGGTGGTCT 59.987 40.000 0.00 0.00 0.00 3.85
379 380 5.940470 GTCAAATTCATCTACAGGTGGTCTT 59.060 40.000 0.00 0.00 0.00 3.01
380 381 6.431234 GTCAAATTCATCTACAGGTGGTCTTT 59.569 38.462 0.00 0.00 0.00 2.52
381 382 7.004086 TCAAATTCATCTACAGGTGGTCTTTT 58.996 34.615 0.00 0.00 0.00 2.27
382 383 7.174946 TCAAATTCATCTACAGGTGGTCTTTTC 59.825 37.037 0.00 0.00 0.00 2.29
383 384 5.825593 TTCATCTACAGGTGGTCTTTTCT 57.174 39.130 0.00 0.00 0.00 2.52
384 385 5.152623 TCATCTACAGGTGGTCTTTTCTG 57.847 43.478 0.00 0.00 0.00 3.02
385 386 4.020218 TCATCTACAGGTGGTCTTTTCTGG 60.020 45.833 0.00 0.00 0.00 3.86
386 387 2.038557 TCTACAGGTGGTCTTTTCTGGC 59.961 50.000 0.00 0.00 0.00 4.85
387 388 0.550914 ACAGGTGGTCTTTTCTGGCA 59.449 50.000 0.00 0.00 0.00 4.92
388 389 1.064017 ACAGGTGGTCTTTTCTGGCAA 60.064 47.619 0.00 0.00 0.00 4.52
389 390 2.242043 CAGGTGGTCTTTTCTGGCAAT 58.758 47.619 0.00 0.00 0.00 3.56
390 391 2.629617 CAGGTGGTCTTTTCTGGCAATT 59.370 45.455 0.00 0.00 0.00 2.32
391 392 2.893489 AGGTGGTCTTTTCTGGCAATTC 59.107 45.455 0.00 0.00 0.00 2.17
392 393 2.029020 GGTGGTCTTTTCTGGCAATTCC 60.029 50.000 0.00 0.00 0.00 3.01
393 394 2.627699 GTGGTCTTTTCTGGCAATTCCA 59.372 45.455 0.00 0.00 44.18 3.53
394 395 3.069443 GTGGTCTTTTCTGGCAATTCCAA 59.931 43.478 0.00 0.00 46.01 3.53
395 396 3.903090 TGGTCTTTTCTGGCAATTCCAAT 59.097 39.130 0.00 0.00 46.01 3.16
396 397 4.248058 GGTCTTTTCTGGCAATTCCAATG 58.752 43.478 0.00 0.00 46.01 2.82
397 398 4.248058 GTCTTTTCTGGCAATTCCAATGG 58.752 43.478 0.00 0.00 46.01 3.16
398 399 3.261390 TCTTTTCTGGCAATTCCAATGGG 59.739 43.478 0.00 0.00 46.01 4.00
399 400 0.903942 TTCTGGCAATTCCAATGGGC 59.096 50.000 0.00 0.00 46.01 5.36
400 401 0.252148 TCTGGCAATTCCAATGGGCA 60.252 50.000 0.00 3.10 46.01 5.36
401 402 0.614294 CTGGCAATTCCAATGGGCAA 59.386 50.000 0.00 0.00 46.01 4.52
402 403 0.614294 TGGCAATTCCAATGGGCAAG 59.386 50.000 0.00 0.00 41.40 4.01
403 404 0.614812 GGCAATTCCAATGGGCAAGT 59.385 50.000 0.00 0.00 35.13 3.16
404 405 1.676615 GGCAATTCCAATGGGCAAGTG 60.677 52.381 0.00 0.00 35.13 3.16
405 406 1.676615 GCAATTCCAATGGGCAAGTGG 60.677 52.381 0.77 0.77 0.00 4.00
406 407 1.624813 CAATTCCAATGGGCAAGTGGT 59.375 47.619 8.44 0.00 33.88 4.16
407 408 1.560505 ATTCCAATGGGCAAGTGGTC 58.439 50.000 8.44 0.00 33.88 4.02
408 409 0.482446 TTCCAATGGGCAAGTGGTCT 59.518 50.000 8.44 0.00 33.88 3.85
409 410 0.482446 TCCAATGGGCAAGTGGTCTT 59.518 50.000 8.44 0.00 33.88 3.01
410 411 1.133199 TCCAATGGGCAAGTGGTCTTT 60.133 47.619 8.44 0.00 33.88 2.52
411 412 1.693606 CCAATGGGCAAGTGGTCTTTT 59.306 47.619 0.00 0.00 0.00 2.27
412 413 2.104622 CCAATGGGCAAGTGGTCTTTTT 59.895 45.455 0.00 0.00 0.00 1.94
593 595 2.091555 TCTCTCTCCTCTAAGCTTCCCC 60.092 54.545 0.00 0.00 0.00 4.81
810 812 2.234300 ACCGCAAAGTCGAAGAAGAA 57.766 45.000 0.00 0.00 39.69 2.52
832 834 6.846505 AGAATAAGGAGAGAGAGAGAGAGAGA 59.153 42.308 0.00 0.00 0.00 3.10
833 835 6.678568 ATAAGGAGAGAGAGAGAGAGAGAG 57.321 45.833 0.00 0.00 0.00 3.20
834 836 4.271807 AGGAGAGAGAGAGAGAGAGAGA 57.728 50.000 0.00 0.00 0.00 3.10
835 837 4.222336 AGGAGAGAGAGAGAGAGAGAGAG 58.778 52.174 0.00 0.00 0.00 3.20
836 838 4.078922 AGGAGAGAGAGAGAGAGAGAGAGA 60.079 50.000 0.00 0.00 0.00 3.10
837 839 4.651503 GGAGAGAGAGAGAGAGAGAGAGAA 59.348 50.000 0.00 0.00 0.00 2.87
838 840 5.221422 GGAGAGAGAGAGAGAGAGAGAGAAG 60.221 52.000 0.00 0.00 0.00 2.85
839 841 5.523588 AGAGAGAGAGAGAGAGAGAGAAGA 58.476 45.833 0.00 0.00 0.00 2.87
840 842 5.960811 AGAGAGAGAGAGAGAGAGAGAAGAA 59.039 44.000 0.00 0.00 0.00 2.52
841 843 6.098124 AGAGAGAGAGAGAGAGAGAGAAGAAG 59.902 46.154 0.00 0.00 0.00 2.85
1275 1284 1.001020 TGCCATGGCTCGGTTTCAT 60.001 52.632 35.53 0.00 42.51 2.57
1392 1401 9.277783 CATGTTAGGTGGATTATTAGAAGGAAG 57.722 37.037 0.00 0.00 0.00 3.46
1535 1545 4.478371 TGCAGGCGAGCAGATGGG 62.478 66.667 3.54 0.00 40.11 4.00
1616 1626 4.720046 TCTCAGACACTGACTCTGTTAGT 58.280 43.478 0.00 0.00 42.80 2.24
1746 1756 6.258947 GGATTCTCTTGAACATGGTACTAAGC 59.741 42.308 0.00 0.00 34.71 3.09
1747 1757 6.360370 TTCTCTTGAACATGGTACTAAGCT 57.640 37.500 0.00 0.00 0.00 3.74
1748 1758 7.476540 TTCTCTTGAACATGGTACTAAGCTA 57.523 36.000 0.00 0.00 0.00 3.32
1749 1759 7.476540 TCTCTTGAACATGGTACTAAGCTAA 57.523 36.000 0.00 0.00 0.00 3.09
1750 1760 7.903145 TCTCTTGAACATGGTACTAAGCTAAA 58.097 34.615 0.00 0.00 0.00 1.85
1751 1761 8.540388 TCTCTTGAACATGGTACTAAGCTAAAT 58.460 33.333 0.00 0.00 0.00 1.40
1752 1762 8.492673 TCTTGAACATGGTACTAAGCTAAATG 57.507 34.615 0.00 0.00 0.00 2.32
1753 1763 7.552687 TCTTGAACATGGTACTAAGCTAAATGG 59.447 37.037 0.00 0.00 0.00 3.16
1754 1764 6.717289 TGAACATGGTACTAAGCTAAATGGT 58.283 36.000 0.00 0.00 0.00 3.55
1856 1866 1.202580 CCGGAAGATGAGGGTGATGAC 60.203 57.143 0.00 0.00 0.00 3.06
3245 3304 5.446260 ACCGAATCAAATAACCCCTACTT 57.554 39.130 0.00 0.00 0.00 2.24
3370 3429 2.554893 GTCCAAAATGTAGCCCGTTTCA 59.445 45.455 0.00 0.00 30.93 2.69
3529 3605 6.701937 ACGTGTACAATAGCATATTTTGACG 58.298 36.000 0.00 0.00 0.00 4.35
3547 3623 0.679002 CGTCTACTCCCTCCGTTCCA 60.679 60.000 0.00 0.00 0.00 3.53
3553 3629 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3555 3631 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3557 3633 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3560 3636 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
3561 3637 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
3562 3638 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
3563 3639 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
3564 3640 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
3565 3641 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
3566 3642 7.308589 CCGTTCCAAAATAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
3568 3644 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
3569 3645 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
3570 3646 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
3571 3647 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
3694 3837 7.333672 CCCTTATTGACCTACCGATAAATTAGC 59.666 40.741 0.00 0.00 0.00 3.09
3859 4003 9.581289 ACAGAGAGTACTAGCTAATAATGTGAT 57.419 33.333 0.00 0.00 0.00 3.06
4179 4323 5.879237 TCAAACAAATACAAGGCGATGATC 58.121 37.500 0.26 0.00 0.00 2.92
4196 4340 3.599343 TGATCCACGAATGTTTGAGGAG 58.401 45.455 5.58 0.00 35.26 3.69
4209 4353 9.118300 GAATGTTTGAGGAGATTTCTGTATCAT 57.882 33.333 0.00 0.00 0.00 2.45
4247 4391 3.203716 GAACGAGGAAGGTGAAAGTGTT 58.796 45.455 0.00 0.00 0.00 3.32
5419 5642 9.950680 CTATGTTTCTGTTTATTTGTTGTGTCT 57.049 29.630 0.00 0.00 0.00 3.41
5474 5778 9.459640 CTGTTTGAAGATATATGGCAAAATGAG 57.540 33.333 0.00 0.00 31.19 2.90
5636 5941 5.733109 GCGAGGTGACGAAATTAGATTTTTC 59.267 40.000 0.00 0.00 35.09 2.29
5934 6268 3.960102 TGGAAAACAGATTTGCTTGAGGT 59.040 39.130 0.00 0.00 39.83 3.85
6032 6381 0.997932 CTGCTTCAGTGATGACGAGC 59.002 55.000 10.08 8.35 0.00 5.03
7060 7430 7.069331 AGGTTCATAATCAAACAAGTCACCAAA 59.931 33.333 0.00 0.00 0.00 3.28
7163 7533 3.352648 TGCCTGGCAAAAATAGTAGGAC 58.647 45.455 21.08 0.00 34.76 3.85
7199 7569 0.630673 TACTTTGCCTGGCCCATGAT 59.369 50.000 17.53 0.00 0.00 2.45
7792 8162 5.954434 TCGTTTCTTGCGGTATGTTATAC 57.046 39.130 0.00 0.00 0.00 1.47
7898 8351 3.366679 CCTCTGCCATTTGTACTTTGCTG 60.367 47.826 0.00 0.00 0.00 4.41
7914 8367 6.467677 ACTTTGCTGTATATGTCTTCTGTGT 58.532 36.000 0.00 0.00 0.00 3.72
8139 8593 6.158260 ACCCTTCCCTCACCTTGTTATATAT 58.842 40.000 0.00 0.00 0.00 0.86
8140 8594 7.318401 ACCCTTCCCTCACCTTGTTATATATA 58.682 38.462 0.00 0.00 0.00 0.86
8220 8674 4.697352 GTGAAAGCCATGTGACTCATAAGT 59.303 41.667 0.00 0.00 38.88 2.24
8248 8702 7.903431 GCAATTTTAGGAGTTCACGTATTACTG 59.097 37.037 0.00 0.00 0.00 2.74
8249 8703 9.146984 CAATTTTAGGAGTTCACGTATTACTGA 57.853 33.333 0.00 0.00 0.00 3.41
8250 8704 9.715121 AATTTTAGGAGTTCACGTATTACTGAA 57.285 29.630 0.00 5.25 0.00 3.02
8251 8705 9.715121 ATTTTAGGAGTTCACGTATTACTGAAA 57.285 29.630 9.04 0.00 0.00 2.69
8252 8706 9.545105 TTTTAGGAGTTCACGTATTACTGAAAA 57.455 29.630 9.04 0.00 0.00 2.29
8253 8707 9.545105 TTTAGGAGTTCACGTATTACTGAAAAA 57.455 29.630 9.04 5.35 0.00 1.94
8254 8708 9.715121 TTAGGAGTTCACGTATTACTGAAAAAT 57.285 29.630 9.04 0.00 0.00 1.82
8282 8736 8.964476 AAAATGACGGATGTAATTCTATCTGT 57.036 30.769 13.33 13.33 43.61 3.41
8397 8851 3.226777 CCAATACACCTGGGACAAACAA 58.773 45.455 0.00 0.00 38.70 2.83
8851 9305 7.201866 CCAGAGTAGAGAAGTGTGCAATATACT 60.202 40.741 0.00 0.00 31.33 2.12
8852 9306 7.860373 CAGAGTAGAGAAGTGTGCAATATACTC 59.140 40.741 0.00 0.00 37.79 2.59
8853 9307 7.013846 AGAGTAGAGAAGTGTGCAATATACTCC 59.986 40.741 0.00 0.00 38.10 3.85
8854 9308 5.283457 AGAGAAGTGTGCAATATACTCCC 57.717 43.478 0.00 0.00 29.58 4.30
8855 9309 4.965532 AGAGAAGTGTGCAATATACTCCCT 59.034 41.667 0.00 0.00 29.58 4.20
8856 9310 5.069781 AGAGAAGTGTGCAATATACTCCCTC 59.930 44.000 0.00 2.60 33.94 4.30
8857 9311 4.101741 AGAAGTGTGCAATATACTCCCTCC 59.898 45.833 0.00 0.00 29.58 4.30
8858 9312 2.365617 AGTGTGCAATATACTCCCTCCG 59.634 50.000 0.00 0.00 0.00 4.63
8859 9313 2.102588 GTGTGCAATATACTCCCTCCGT 59.897 50.000 0.00 0.00 0.00 4.69
8860 9314 2.364324 TGTGCAATATACTCCCTCCGTC 59.636 50.000 0.00 0.00 0.00 4.79
8861 9315 1.968493 TGCAATATACTCCCTCCGTCC 59.032 52.381 0.00 0.00 0.00 4.79
8862 9316 1.067776 GCAATATACTCCCTCCGTCCG 60.068 57.143 0.00 0.00 0.00 4.79
8863 9317 1.544691 CAATATACTCCCTCCGTCCGG 59.455 57.143 0.00 0.00 0.00 5.14
8864 9318 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
8865 9319 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
8866 9320 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
8867 9321 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
8868 9322 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
8869 9323 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
8870 9324 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
8871 9325 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
8872 9326 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
8873 9327 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
8874 9328 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
8875 9329 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
8876 9330 1.135315 CCGTCCGGAAATACTTGTCGA 60.135 52.381 5.23 0.00 37.50 4.20
8877 9331 2.598589 CGTCCGGAAATACTTGTCGAA 58.401 47.619 5.23 0.00 0.00 3.71
8878 9332 2.597305 CGTCCGGAAATACTTGTCGAAG 59.403 50.000 5.23 0.00 35.07 3.79
8879 9333 3.671433 CGTCCGGAAATACTTGTCGAAGA 60.671 47.826 5.23 0.00 32.98 2.87
8880 9334 4.240096 GTCCGGAAATACTTGTCGAAGAA 58.760 43.478 5.23 0.00 39.69 2.52
8881 9335 4.687483 GTCCGGAAATACTTGTCGAAGAAA 59.313 41.667 5.23 0.00 39.69 2.52
8882 9336 5.350640 GTCCGGAAATACTTGTCGAAGAAAT 59.649 40.000 5.23 0.00 39.69 2.17
8883 9337 5.350365 TCCGGAAATACTTGTCGAAGAAATG 59.650 40.000 0.00 0.00 39.69 2.32
8884 9338 5.447279 CCGGAAATACTTGTCGAAGAAATGG 60.447 44.000 0.00 0.00 39.69 3.16
8885 9339 5.350365 CGGAAATACTTGTCGAAGAAATGGA 59.650 40.000 0.00 0.00 39.69 3.41
8886 9340 6.037172 CGGAAATACTTGTCGAAGAAATGGAT 59.963 38.462 0.00 0.00 39.69 3.41
8887 9341 7.189512 GGAAATACTTGTCGAAGAAATGGATG 58.810 38.462 0.00 0.00 39.69 3.51
8888 9342 7.148239 GGAAATACTTGTCGAAGAAATGGATGT 60.148 37.037 0.00 0.00 39.69 3.06
8889 9343 8.786826 AAATACTTGTCGAAGAAATGGATGTA 57.213 30.769 0.00 0.00 39.69 2.29
8890 9344 8.964476 AATACTTGTCGAAGAAATGGATGTAT 57.036 30.769 0.00 0.00 39.69 2.29
8891 9345 6.910536 ACTTGTCGAAGAAATGGATGTATC 57.089 37.500 0.00 0.00 39.69 2.24
8892 9346 6.644347 ACTTGTCGAAGAAATGGATGTATCT 58.356 36.000 0.00 0.00 39.69 1.98
8893 9347 7.782049 ACTTGTCGAAGAAATGGATGTATCTA 58.218 34.615 0.00 0.00 39.69 1.98
8894 9348 7.923344 ACTTGTCGAAGAAATGGATGTATCTAG 59.077 37.037 0.00 0.00 39.69 2.43
8895 9349 7.582667 TGTCGAAGAAATGGATGTATCTAGA 57.417 36.000 0.00 0.00 39.69 2.43
8896 9350 7.426410 TGTCGAAGAAATGGATGTATCTAGAC 58.574 38.462 0.00 0.00 39.69 2.59
8897 9351 6.579292 GTCGAAGAAATGGATGTATCTAGACG 59.421 42.308 0.00 0.00 39.69 4.18
8898 9352 5.343593 CGAAGAAATGGATGTATCTAGACGC 59.656 44.000 0.00 0.00 0.00 5.19
8899 9353 5.791336 AGAAATGGATGTATCTAGACGCA 57.209 39.130 0.00 0.00 0.00 5.24
8900 9354 6.352016 AGAAATGGATGTATCTAGACGCAT 57.648 37.500 9.78 9.78 0.00 4.73
8901 9355 6.763355 AGAAATGGATGTATCTAGACGCATT 58.237 36.000 10.93 0.00 0.00 3.56
8902 9356 7.220030 AGAAATGGATGTATCTAGACGCATTT 58.780 34.615 10.93 0.00 0.00 2.32
8903 9357 7.716998 AGAAATGGATGTATCTAGACGCATTTT 59.283 33.333 10.93 8.42 0.00 1.82
8904 9358 8.902540 AAATGGATGTATCTAGACGCATTTTA 57.097 30.769 10.93 3.77 0.00 1.52
8905 9359 8.539770 AATGGATGTATCTAGACGCATTTTAG 57.460 34.615 10.93 0.00 0.00 1.85
8906 9360 7.050970 TGGATGTATCTAGACGCATTTTAGT 57.949 36.000 10.93 0.00 0.00 2.24
8907 9361 7.497595 TGGATGTATCTAGACGCATTTTAGTT 58.502 34.615 10.93 0.00 0.00 2.24
8908 9362 7.652105 TGGATGTATCTAGACGCATTTTAGTTC 59.348 37.037 10.93 0.51 0.00 3.01
8909 9363 7.868415 GGATGTATCTAGACGCATTTTAGTTCT 59.132 37.037 10.93 0.00 0.00 3.01
8910 9364 9.894783 GATGTATCTAGACGCATTTTAGTTCTA 57.105 33.333 10.93 0.00 0.00 2.10
8911 9365 9.900710 ATGTATCTAGACGCATTTTAGTTCTAG 57.099 33.333 0.00 0.00 0.00 2.43
8912 9366 9.117183 TGTATCTAGACGCATTTTAGTTCTAGA 57.883 33.333 8.64 8.64 38.94 2.43
8916 9370 9.117183 TCTAGACGCATTTTAGTTCTAGATACA 57.883 33.333 0.00 0.00 32.48 2.29
8917 9371 9.900710 CTAGACGCATTTTAGTTCTAGATACAT 57.099 33.333 0.00 0.00 0.00 2.29
8918 9372 8.804688 AGACGCATTTTAGTTCTAGATACATC 57.195 34.615 0.00 0.00 0.00 3.06
8919 9373 7.868415 AGACGCATTTTAGTTCTAGATACATCC 59.132 37.037 0.00 0.00 0.00 3.51
8920 9374 7.497595 ACGCATTTTAGTTCTAGATACATCCA 58.502 34.615 0.00 0.00 0.00 3.41
8921 9375 8.150945 ACGCATTTTAGTTCTAGATACATCCAT 58.849 33.333 0.00 0.00 0.00 3.41
8922 9376 8.993121 CGCATTTTAGTTCTAGATACATCCATT 58.007 33.333 0.00 0.00 0.00 3.16
8938 9392 7.568199 ACATCCATTTTTACCTATTTCTCCG 57.432 36.000 0.00 0.00 0.00 4.63
8939 9393 7.343357 ACATCCATTTTTACCTATTTCTCCGA 58.657 34.615 0.00 0.00 0.00 4.55
8940 9394 7.282450 ACATCCATTTTTACCTATTTCTCCGAC 59.718 37.037 0.00 0.00 0.00 4.79
8941 9395 6.713276 TCCATTTTTACCTATTTCTCCGACA 58.287 36.000 0.00 0.00 0.00 4.35
8942 9396 7.169591 TCCATTTTTACCTATTTCTCCGACAA 58.830 34.615 0.00 0.00 0.00 3.18
8943 9397 7.335924 TCCATTTTTACCTATTTCTCCGACAAG 59.664 37.037 0.00 0.00 0.00 3.16
8944 9398 7.120726 CCATTTTTACCTATTTCTCCGACAAGT 59.879 37.037 0.00 0.00 0.00 3.16
8945 9399 9.158233 CATTTTTACCTATTTCTCCGACAAGTA 57.842 33.333 0.00 0.00 0.00 2.24
8946 9400 9.901172 ATTTTTACCTATTTCTCCGACAAGTAT 57.099 29.630 0.00 0.00 0.00 2.12
8947 9401 9.729281 TTTTTACCTATTTCTCCGACAAGTATT 57.271 29.630 0.00 0.00 0.00 1.89
8948 9402 9.729281 TTTTACCTATTTCTCCGACAAGTATTT 57.271 29.630 0.00 0.00 0.00 1.40
8949 9403 9.729281 TTTACCTATTTCTCCGACAAGTATTTT 57.271 29.630 0.00 0.00 0.00 1.82
8950 9404 7.845066 ACCTATTTCTCCGACAAGTATTTTC 57.155 36.000 0.00 0.00 0.00 2.29
8951 9405 7.391620 ACCTATTTCTCCGACAAGTATTTTCA 58.608 34.615 0.00 0.00 0.00 2.69
8952 9406 7.549488 ACCTATTTCTCCGACAAGTATTTTCAG 59.451 37.037 0.00 0.00 0.00 3.02
8953 9407 7.764443 CCTATTTCTCCGACAAGTATTTTCAGA 59.236 37.037 0.00 0.00 0.00 3.27
8954 9408 6.780706 TTTCTCCGACAAGTATTTTCAGAC 57.219 37.500 0.00 0.00 0.00 3.51
8955 9409 4.482386 TCTCCGACAAGTATTTTCAGACG 58.518 43.478 0.00 0.00 0.00 4.18
8956 9410 3.581755 TCCGACAAGTATTTTCAGACGG 58.418 45.455 0.00 0.00 39.30 4.79
8957 9411 3.256383 TCCGACAAGTATTTTCAGACGGA 59.744 43.478 0.00 0.00 43.35 4.69
8958 9412 3.612860 CCGACAAGTATTTTCAGACGGAG 59.387 47.826 0.00 0.00 40.16 4.63
8959 9413 3.612860 CGACAAGTATTTTCAGACGGAGG 59.387 47.826 0.00 0.00 0.00 4.30
8960 9414 3.933332 GACAAGTATTTTCAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
8961 9415 3.581332 ACAAGTATTTTCAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
8962 9416 4.184629 CAAGTATTTTCAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
8963 9417 3.442076 AGTATTTTCAGACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
8964 9418 4.607239 AGTATTTTCAGACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
8965 9419 3.889520 ATTTTCAGACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
8982 9436 5.006746 GGGAGTACGAAATAAGTGCATTCAG 59.993 44.000 0.00 0.00 0.00 3.02
9175 9631 4.879545 ACTAGTTACAAGTGGTTGGTTGTG 59.120 41.667 0.00 0.00 37.46 3.33
9176 9632 3.692690 AGTTACAAGTGGTTGGTTGTGT 58.307 40.909 0.00 0.00 37.46 3.72
9192 9648 7.767250 TGGTTGTGTTTGATGAATAATGGTA 57.233 32.000 0.00 0.00 0.00 3.25
9193 9649 7.598278 TGGTTGTGTTTGATGAATAATGGTAC 58.402 34.615 0.00 0.00 0.00 3.34
9194 9650 7.450014 TGGTTGTGTTTGATGAATAATGGTACT 59.550 33.333 0.00 0.00 0.00 2.73
9393 9849 8.782339 TTAAAATTAGAGGTAGTACAAGTGGC 57.218 34.615 2.06 0.00 0.00 5.01
9399 9855 2.709397 AGGTAGTACAAGTGGCTGGTTT 59.291 45.455 2.06 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.728864 CGTTGATTCCCATGCTTCGAAAG 60.729 47.826 0.00 0.00 0.00 2.62
2 3 2.161410 CGTTGATTCCCATGCTTCGAAA 59.839 45.455 0.00 0.00 0.00 3.46
3 4 1.737236 CGTTGATTCCCATGCTTCGAA 59.263 47.619 0.00 0.00 0.00 3.71
4 5 1.368641 CGTTGATTCCCATGCTTCGA 58.631 50.000 0.00 0.00 0.00 3.71
5 6 0.378257 CCGTTGATTCCCATGCTTCG 59.622 55.000 0.00 0.00 0.00 3.79
6 7 1.672881 CTCCGTTGATTCCCATGCTTC 59.327 52.381 0.00 0.00 0.00 3.86
7 8 1.004745 ACTCCGTTGATTCCCATGCTT 59.995 47.619 0.00 0.00 0.00 3.91
8 9 0.620556 ACTCCGTTGATTCCCATGCT 59.379 50.000 0.00 0.00 0.00 3.79
9 10 1.463674 AACTCCGTTGATTCCCATGC 58.536 50.000 0.00 0.00 0.00 4.06
10 11 2.819608 ACAAACTCCGTTGATTCCCATG 59.180 45.455 0.00 0.00 32.59 3.66
11 12 3.154827 ACAAACTCCGTTGATTCCCAT 57.845 42.857 0.00 0.00 32.59 4.00
12 13 2.649531 ACAAACTCCGTTGATTCCCA 57.350 45.000 0.00 0.00 32.59 4.37
13 14 3.308866 CGATACAAACTCCGTTGATTCCC 59.691 47.826 0.00 0.00 32.59 3.97
14 15 3.308866 CCGATACAAACTCCGTTGATTCC 59.691 47.826 0.00 0.00 32.59 3.01
15 16 4.178540 TCCGATACAAACTCCGTTGATTC 58.821 43.478 0.00 0.00 32.59 2.52
16 17 4.196626 TCCGATACAAACTCCGTTGATT 57.803 40.909 0.00 0.00 32.59 2.57
17 18 3.880047 TCCGATACAAACTCCGTTGAT 57.120 42.857 0.00 0.00 32.59 2.57
18 19 3.663995 TTCCGATACAAACTCCGTTGA 57.336 42.857 0.00 0.00 32.59 3.18
19 20 3.930229 TGATTCCGATACAAACTCCGTTG 59.070 43.478 0.00 0.00 34.52 4.10
20 21 4.181578 CTGATTCCGATACAAACTCCGTT 58.818 43.478 0.00 0.00 0.00 4.44
21 22 3.782046 CTGATTCCGATACAAACTCCGT 58.218 45.455 0.00 0.00 0.00 4.69
22 23 2.540101 GCTGATTCCGATACAAACTCCG 59.460 50.000 0.00 0.00 0.00 4.63
23 24 2.540101 CGCTGATTCCGATACAAACTCC 59.460 50.000 0.00 0.00 0.00 3.85
24 25 2.033662 GCGCTGATTCCGATACAAACTC 60.034 50.000 0.00 0.00 0.00 3.01
25 26 1.933853 GCGCTGATTCCGATACAAACT 59.066 47.619 0.00 0.00 0.00 2.66
26 27 1.003866 GGCGCTGATTCCGATACAAAC 60.004 52.381 7.64 0.00 0.00 2.93
27 28 1.295792 GGCGCTGATTCCGATACAAA 58.704 50.000 7.64 0.00 0.00 2.83
28 29 2.986311 GGCGCTGATTCCGATACAA 58.014 52.632 7.64 0.00 0.00 2.41
29 30 4.750460 GGCGCTGATTCCGATACA 57.250 55.556 7.64 0.00 0.00 2.29
31 32 2.749110 GAGCGGCGCTGATTCCGATA 62.749 60.000 41.51 0.00 45.15 2.92
35 36 4.537433 AGGAGCGGCGCTGATTCC 62.537 66.667 41.51 32.14 39.88 3.01
36 37 1.648467 AAAAGGAGCGGCGCTGATTC 61.648 55.000 41.51 24.58 39.88 2.52
37 38 1.648467 GAAAAGGAGCGGCGCTGATT 61.648 55.000 41.51 28.65 39.88 2.57
38 39 2.045926 AAAAGGAGCGGCGCTGAT 60.046 55.556 41.51 24.40 39.88 2.90
39 40 2.742372 GAAAAGGAGCGGCGCTGA 60.742 61.111 41.51 0.00 39.88 4.26
40 41 3.804193 GGAAAAGGAGCGGCGCTG 61.804 66.667 41.51 13.18 39.88 5.18
47 48 3.134127 ATGCGCGGGAAAAGGAGC 61.134 61.111 8.83 0.00 0.00 4.70
48 49 2.793946 CATGCGCGGGAAAAGGAG 59.206 61.111 8.83 0.00 0.00 3.69
49 50 3.439540 GCATGCGCGGGAAAAGGA 61.440 61.111 8.83 0.00 0.00 3.36
50 51 3.688475 CTGCATGCGCGGGAAAAGG 62.688 63.158 14.09 0.00 42.97 3.11
51 52 2.202518 CTGCATGCGCGGGAAAAG 60.203 61.111 14.09 0.00 42.97 2.27
52 53 4.418401 GCTGCATGCGCGGGAAAA 62.418 61.111 14.09 0.00 45.34 2.29
132 133 4.593864 GATCGCTCCCTGGCCGAC 62.594 72.222 0.00 0.00 0.00 4.79
145 146 4.637489 CCTCTCCTGGCGCGATCG 62.637 72.222 12.10 11.69 39.07 3.69
146 147 4.959596 GCCTCTCCTGGCGCGATC 62.960 72.222 12.10 0.51 43.74 3.69
217 218 3.437795 ATTGCTGCAGTGCGCCTC 61.438 61.111 22.85 8.60 41.33 4.70
218 219 3.744719 CATTGCTGCAGTGCGCCT 61.745 61.111 22.85 11.81 41.33 5.52
219 220 3.958822 GACATTGCTGCAGTGCGCC 62.959 63.158 22.84 12.34 41.33 6.53
220 221 2.503375 GACATTGCTGCAGTGCGC 60.503 61.111 22.84 20.27 42.89 6.09
221 222 2.202260 CGACATTGCTGCAGTGCG 60.202 61.111 22.84 21.29 35.36 5.34
222 223 0.318107 AAACGACATTGCTGCAGTGC 60.318 50.000 22.84 8.58 0.00 4.40
223 224 1.678360 GAAACGACATTGCTGCAGTG 58.322 50.000 21.57 21.57 0.00 3.66
224 225 0.235665 CGAAACGACATTGCTGCAGT 59.764 50.000 16.64 0.00 0.00 4.40
225 226 1.061799 GCGAAACGACATTGCTGCAG 61.062 55.000 10.11 10.11 0.00 4.41
226 227 1.082169 GCGAAACGACATTGCTGCA 60.082 52.632 0.00 0.00 0.00 4.41
227 228 1.797537 GGCGAAACGACATTGCTGC 60.798 57.895 0.00 0.00 33.63 5.25
228 229 0.453282 CAGGCGAAACGACATTGCTG 60.453 55.000 0.00 0.00 37.34 4.41
229 230 1.577328 CCAGGCGAAACGACATTGCT 61.577 55.000 0.00 0.00 37.34 3.91
230 231 1.154225 CCAGGCGAAACGACATTGC 60.154 57.895 0.00 0.00 37.34 3.56
231 232 1.234615 ACCCAGGCGAAACGACATTG 61.235 55.000 0.00 0.00 37.34 2.82
232 233 1.072505 ACCCAGGCGAAACGACATT 59.927 52.632 0.00 0.00 37.34 2.71
233 234 1.671054 CACCCAGGCGAAACGACAT 60.671 57.895 0.00 0.00 37.34 3.06
234 235 2.280524 CACCCAGGCGAAACGACA 60.281 61.111 0.00 0.00 37.34 4.35
235 236 3.047877 CCACCCAGGCGAAACGAC 61.048 66.667 0.00 0.00 33.59 4.34
304 305 4.961511 GACAGGCGACACGTGGCA 62.962 66.667 23.63 0.00 42.04 4.92
336 337 3.219788 AAAAAGGACCCCCTCGCCC 62.220 63.158 0.00 0.00 43.48 6.13
337 338 1.977009 CAAAAAGGACCCCCTCGCC 60.977 63.158 0.00 0.00 43.48 5.54
338 339 1.228459 ACAAAAAGGACCCCCTCGC 60.228 57.895 0.00 0.00 43.48 5.03
339 340 0.109723 TGACAAAAAGGACCCCCTCG 59.890 55.000 0.00 0.00 43.48 4.63
340 341 2.375014 TTGACAAAAAGGACCCCCTC 57.625 50.000 0.00 0.00 43.48 4.30
342 343 3.389656 TGAATTTGACAAAAAGGACCCCC 59.610 43.478 4.41 0.00 0.00 5.40
343 344 4.681074 TGAATTTGACAAAAAGGACCCC 57.319 40.909 4.41 0.00 0.00 4.95
344 345 6.101650 AGATGAATTTGACAAAAAGGACCC 57.898 37.500 4.41 0.00 0.00 4.46
345 346 7.657336 TGTAGATGAATTTGACAAAAAGGACC 58.343 34.615 4.41 0.00 0.00 4.46
346 347 7.809806 CCTGTAGATGAATTTGACAAAAAGGAC 59.190 37.037 4.41 0.00 0.00 3.85
347 348 7.505585 ACCTGTAGATGAATTTGACAAAAAGGA 59.494 33.333 4.41 0.00 0.00 3.36
348 349 7.596248 CACCTGTAGATGAATTTGACAAAAAGG 59.404 37.037 4.41 0.00 0.00 3.11
349 350 7.596248 CCACCTGTAGATGAATTTGACAAAAAG 59.404 37.037 4.41 0.00 0.00 2.27
350 351 7.069331 ACCACCTGTAGATGAATTTGACAAAAA 59.931 33.333 4.41 0.00 0.00 1.94
351 352 6.549364 ACCACCTGTAGATGAATTTGACAAAA 59.451 34.615 4.41 0.00 0.00 2.44
352 353 6.068010 ACCACCTGTAGATGAATTTGACAAA 58.932 36.000 2.48 2.48 0.00 2.83
353 354 5.630121 ACCACCTGTAGATGAATTTGACAA 58.370 37.500 0.00 0.00 0.00 3.18
354 355 5.013079 AGACCACCTGTAGATGAATTTGACA 59.987 40.000 0.00 0.00 0.00 3.58
355 356 5.491982 AGACCACCTGTAGATGAATTTGAC 58.508 41.667 0.00 0.00 0.00 3.18
356 357 5.762179 AGACCACCTGTAGATGAATTTGA 57.238 39.130 0.00 0.00 0.00 2.69
357 358 6.824305 AAAGACCACCTGTAGATGAATTTG 57.176 37.500 0.00 0.00 0.00 2.32
358 359 7.175641 CAGAAAAGACCACCTGTAGATGAATTT 59.824 37.037 0.00 0.00 0.00 1.82
359 360 6.656693 CAGAAAAGACCACCTGTAGATGAATT 59.343 38.462 0.00 0.00 0.00 2.17
360 361 6.176183 CAGAAAAGACCACCTGTAGATGAAT 58.824 40.000 0.00 0.00 0.00 2.57
361 362 5.513094 CCAGAAAAGACCACCTGTAGATGAA 60.513 44.000 0.00 0.00 0.00 2.57
362 363 4.020218 CCAGAAAAGACCACCTGTAGATGA 60.020 45.833 0.00 0.00 0.00 2.92
363 364 4.256920 CCAGAAAAGACCACCTGTAGATG 58.743 47.826 0.00 0.00 0.00 2.90
364 365 3.307762 GCCAGAAAAGACCACCTGTAGAT 60.308 47.826 0.00 0.00 0.00 1.98
365 366 2.038557 GCCAGAAAAGACCACCTGTAGA 59.961 50.000 0.00 0.00 0.00 2.59
366 367 2.224523 TGCCAGAAAAGACCACCTGTAG 60.225 50.000 0.00 0.00 0.00 2.74
367 368 1.771854 TGCCAGAAAAGACCACCTGTA 59.228 47.619 0.00 0.00 0.00 2.74
368 369 0.550914 TGCCAGAAAAGACCACCTGT 59.449 50.000 0.00 0.00 0.00 4.00
369 370 1.691196 TTGCCAGAAAAGACCACCTG 58.309 50.000 0.00 0.00 0.00 4.00
370 371 2.683211 ATTGCCAGAAAAGACCACCT 57.317 45.000 0.00 0.00 0.00 4.00
371 372 2.029020 GGAATTGCCAGAAAAGACCACC 60.029 50.000 0.00 0.00 36.34 4.61
372 373 2.627699 TGGAATTGCCAGAAAAGACCAC 59.372 45.455 0.00 0.00 43.33 4.16
373 374 2.956132 TGGAATTGCCAGAAAAGACCA 58.044 42.857 0.00 0.00 43.33 4.02
384 385 0.614812 ACTTGCCCATTGGAATTGCC 59.385 50.000 3.62 0.00 37.10 4.52
385 386 1.676615 CCACTTGCCCATTGGAATTGC 60.677 52.381 3.62 0.00 31.39 3.56
386 387 1.624813 ACCACTTGCCCATTGGAATTG 59.375 47.619 3.62 0.00 34.24 2.32
387 388 1.901833 GACCACTTGCCCATTGGAATT 59.098 47.619 3.62 0.00 34.24 2.17
388 389 1.077663 AGACCACTTGCCCATTGGAAT 59.922 47.619 3.62 0.00 34.24 3.01
389 390 0.482446 AGACCACTTGCCCATTGGAA 59.518 50.000 3.62 0.00 34.24 3.53
390 391 0.482446 AAGACCACTTGCCCATTGGA 59.518 50.000 3.62 0.00 34.80 3.53
391 392 1.341080 AAAGACCACTTGCCCATTGG 58.659 50.000 0.00 0.00 36.39 3.16
392 393 3.473923 AAAAAGACCACTTGCCCATTG 57.526 42.857 0.00 0.00 36.39 2.82
438 439 1.822990 TGCGGACGGAGAAAGAGTATT 59.177 47.619 0.00 0.00 0.00 1.89
570 572 3.383505 GGGAAGCTTAGAGGAGAGAGAAC 59.616 52.174 0.00 0.00 0.00 3.01
593 595 1.141254 AGAGCATGGCTGAGAGGAATG 59.859 52.381 0.00 0.00 39.88 2.67
810 812 6.385443 TCTCTCTCTCTCTCTCTCTCCTTAT 58.615 44.000 0.00 0.00 0.00 1.73
832 834 4.037222 GGGGAATCCTTCTCTTCTTCTCT 58.963 47.826 0.00 0.00 0.00 3.10
833 835 3.181470 CGGGGAATCCTTCTCTTCTTCTC 60.181 52.174 0.00 0.00 0.00 2.87
834 836 2.769095 CGGGGAATCCTTCTCTTCTTCT 59.231 50.000 0.00 0.00 0.00 2.85
835 837 2.743510 GCGGGGAATCCTTCTCTTCTTC 60.744 54.545 0.00 0.00 0.00 2.87
836 838 1.210722 GCGGGGAATCCTTCTCTTCTT 59.789 52.381 0.00 0.00 0.00 2.52
837 839 0.833949 GCGGGGAATCCTTCTCTTCT 59.166 55.000 0.00 0.00 0.00 2.85
838 840 0.541863 TGCGGGGAATCCTTCTCTTC 59.458 55.000 0.00 0.00 0.00 2.87
839 841 0.253327 GTGCGGGGAATCCTTCTCTT 59.747 55.000 0.00 0.00 0.00 2.85
840 842 1.908483 GTGCGGGGAATCCTTCTCT 59.092 57.895 0.00 0.00 0.00 3.10
841 843 1.521681 CGTGCGGGGAATCCTTCTC 60.522 63.158 0.00 0.00 0.00 2.87
890 892 2.807108 GCTAAAATTCCTCTCCGGCGAT 60.807 50.000 9.30 0.00 0.00 4.58
1275 1284 2.435069 TCAAATATCTAAACGGGGGCGA 59.565 45.455 0.00 0.00 0.00 5.54
1339 1348 1.944024 TGTTGAGGTGGTTTACTTGCG 59.056 47.619 0.00 0.00 0.00 4.85
1392 1401 4.933330 TGAACTAGTCACCGATTGCTATC 58.067 43.478 0.00 0.00 0.00 2.08
1396 1405 3.932710 TGAATGAACTAGTCACCGATTGC 59.067 43.478 0.00 0.00 39.72 3.56
1493 1503 2.489971 TGAAAACCAGTTCCGCTACAG 58.510 47.619 0.00 0.00 0.00 2.74
1535 1545 2.745100 GGCCCGTCGTTTTCCTCC 60.745 66.667 0.00 0.00 0.00 4.30
1616 1626 1.476891 GTCATAGACCGGTTGAGCTCA 59.523 52.381 13.74 13.74 0.00 4.26
1746 1756 6.515272 ACTTTCAGCAATGGTACCATTTAG 57.485 37.500 33.10 24.39 43.32 1.85
1747 1757 7.120579 CACTACTTTCAGCAATGGTACCATTTA 59.879 37.037 33.10 20.20 43.32 1.40
1748 1758 6.010219 ACTACTTTCAGCAATGGTACCATTT 58.990 36.000 33.10 19.83 43.32 2.32
1749 1759 5.415701 CACTACTTTCAGCAATGGTACCATT 59.584 40.000 30.66 30.66 46.35 3.16
1750 1760 4.943705 CACTACTTTCAGCAATGGTACCAT 59.056 41.667 22.23 22.23 38.46 3.55
1751 1761 4.323417 CACTACTTTCAGCAATGGTACCA 58.677 43.478 18.99 18.99 0.00 3.25
1752 1762 3.689649 CCACTACTTTCAGCAATGGTACC 59.310 47.826 4.43 4.43 0.00 3.34
1753 1763 3.689649 CCCACTACTTTCAGCAATGGTAC 59.310 47.826 0.00 0.00 0.00 3.34
1754 1764 3.308117 CCCCACTACTTTCAGCAATGGTA 60.308 47.826 0.00 0.00 0.00 3.25
1856 1866 1.467875 CAAATACTCTCGACTCGGCG 58.532 55.000 0.00 0.00 0.00 6.46
1960 1976 2.924757 ATCCGTGATCATGTCAGCAT 57.075 45.000 13.81 0.00 37.56 3.79
1998 2014 3.447586 TGACCTAGTACAGCATTCCTCAC 59.552 47.826 0.00 0.00 0.00 3.51
2770 2829 6.453943 TGCATTAACAGCATTTCTTTAGCAA 58.546 32.000 0.57 0.00 37.02 3.91
2771 2830 6.023357 TGCATTAACAGCATTTCTTTAGCA 57.977 33.333 0.57 0.00 37.02 3.49
3529 3605 1.553706 TTGGAACGGAGGGAGTAGAC 58.446 55.000 0.00 0.00 0.00 2.59
3586 3662 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
3587 3663 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
3588 3664 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
3589 3665 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
3590 3666 7.535258 CGTTCCAAAATAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
3592 3668 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
3594 3670 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
3595 3671 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
3596 3672 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
3597 3673 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
3598 3674 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
3600 3676 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3601 3677 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3602 3678 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3603 3679 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3604 3680 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3605 3681 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
3606 3682 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
3609 3685 2.225091 TGTACTACTCCCTCCGTTCCAA 60.225 50.000 0.00 0.00 0.00 3.53
3610 3686 1.355381 TGTACTACTCCCTCCGTTCCA 59.645 52.381 0.00 0.00 0.00 3.53
3810 3954 5.091261 AGGTCATCTATCAACCAAGTGTC 57.909 43.478 0.00 0.00 35.43 3.67
4179 4323 4.697352 AGAAATCTCCTCAAACATTCGTGG 59.303 41.667 0.00 0.00 0.00 4.94
4209 4353 8.007405 TCCTCGTTCAAACATAATGATCTAGA 57.993 34.615 0.00 0.00 0.00 2.43
4229 4373 2.544267 GACAACACTTTCACCTTCCTCG 59.456 50.000 0.00 0.00 0.00 4.63
4247 4391 4.384537 CCAGATTCCCTATGCTCAAAGACA 60.385 45.833 0.00 0.00 0.00 3.41
5008 5231 4.392047 CCCAAGCAGCATCTGACATAATA 58.608 43.478 0.00 0.00 32.44 0.98
5419 5642 7.888021 GTCCATGGACATAATATTATTCACCCA 59.112 37.037 35.21 10.19 44.02 4.51
5474 5778 6.013379 TCAGATATCTCCCAGTGTAAGGATC 58.987 44.000 1.03 0.00 0.00 3.36
5636 5941 8.137437 ACATGTGTAATCCTTGAACAAGAAAAG 58.863 33.333 14.99 0.18 40.79 2.27
5934 6268 4.901849 TGGGTTTTCCAATATTTGTGTCCA 59.098 37.500 0.00 0.00 43.84 4.02
6915 7285 5.357742 TGGACAGCATTTATCTCTAAGCA 57.642 39.130 0.00 0.00 0.00 3.91
7163 7533 7.336931 AGGCAAAGTACAACAAACCTGATATAG 59.663 37.037 0.00 0.00 0.00 1.31
7792 8162 5.348451 GGTTAAAACAGCATGCATAACAAGG 59.652 40.000 21.98 1.03 42.53 3.61
7898 8351 8.758633 AAACAGTACACACAGAAGACATATAC 57.241 34.615 0.00 0.00 0.00 1.47
7914 8367 6.636705 ACTGTCAAGTCAGTTAAACAGTACA 58.363 36.000 9.75 0.00 44.92 2.90
8058 8512 5.642491 GGTAGACTTGGATGGTTCTTGTTAC 59.358 44.000 0.00 0.00 0.00 2.50
8195 8649 2.221169 TGAGTCACATGGCTTTCACAC 58.779 47.619 0.00 0.00 0.00 3.82
8220 8674 3.482436 ACGTGAACTCCTAAAATTGCCA 58.518 40.909 0.00 0.00 0.00 4.92
8250 8704 9.927668 AGAATTACATCCGTCATTTTTCATTTT 57.072 25.926 0.00 0.00 0.00 1.82
8254 8708 9.613428 AGATAGAATTACATCCGTCATTTTTCA 57.387 29.630 0.00 0.00 0.00 2.69
8282 8736 1.573829 GACATCCGCCGACTGCAAAA 61.574 55.000 0.00 0.00 41.33 2.44
8397 8851 1.202818 GCCTTCACCCAAGTCTCAAGT 60.203 52.381 0.00 0.00 0.00 3.16
8591 9045 1.133253 CTCACCGCAACATTCGCTG 59.867 57.895 0.00 0.00 0.00 5.18
8828 9282 7.142680 GGAGTATATTGCACACTTCTCTACTC 58.857 42.308 0.00 0.00 34.50 2.59
8851 9305 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
8852 9306 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
8853 9307 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
8854 9308 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
8855 9309 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
8856 9310 1.135315 TCGACAAGTATTTCCGGACGG 60.135 52.381 1.83 3.96 0.00 4.79
8857 9311 2.267188 TCGACAAGTATTTCCGGACG 57.733 50.000 1.83 0.27 0.00 4.79
8858 9312 3.841643 TCTTCGACAAGTATTTCCGGAC 58.158 45.455 1.83 0.00 0.00 4.79
8859 9313 4.524316 TTCTTCGACAAGTATTTCCGGA 57.476 40.909 0.00 0.00 0.00 5.14
8860 9314 5.447279 CCATTTCTTCGACAAGTATTTCCGG 60.447 44.000 0.00 0.00 0.00 5.14
8861 9315 5.350365 TCCATTTCTTCGACAAGTATTTCCG 59.650 40.000 0.00 0.00 0.00 4.30
8862 9316 6.737254 TCCATTTCTTCGACAAGTATTTCC 57.263 37.500 0.00 0.00 0.00 3.13
8863 9317 7.752695 ACATCCATTTCTTCGACAAGTATTTC 58.247 34.615 0.00 0.00 0.00 2.17
8864 9318 7.687941 ACATCCATTTCTTCGACAAGTATTT 57.312 32.000 0.00 0.00 0.00 1.40
8865 9319 8.964476 ATACATCCATTTCTTCGACAAGTATT 57.036 30.769 0.00 0.00 0.00 1.89
8866 9320 8.424918 AGATACATCCATTTCTTCGACAAGTAT 58.575 33.333 0.00 0.00 0.00 2.12
8867 9321 7.782049 AGATACATCCATTTCTTCGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
8868 9322 6.644347 AGATACATCCATTTCTTCGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
8869 9323 8.138074 TCTAGATACATCCATTTCTTCGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
8870 9324 7.921214 GTCTAGATACATCCATTTCTTCGACAA 59.079 37.037 0.00 0.00 0.00 3.18
8871 9325 7.426410 GTCTAGATACATCCATTTCTTCGACA 58.574 38.462 0.00 0.00 0.00 4.35
8872 9326 6.579292 CGTCTAGATACATCCATTTCTTCGAC 59.421 42.308 0.00 0.00 0.00 4.20
8873 9327 6.669278 CGTCTAGATACATCCATTTCTTCGA 58.331 40.000 0.00 0.00 0.00 3.71
8874 9328 5.343593 GCGTCTAGATACATCCATTTCTTCG 59.656 44.000 0.00 0.00 0.00 3.79
8875 9329 6.216569 TGCGTCTAGATACATCCATTTCTTC 58.783 40.000 0.00 0.00 0.00 2.87
8876 9330 6.161855 TGCGTCTAGATACATCCATTTCTT 57.838 37.500 0.00 0.00 0.00 2.52
8877 9331 5.791336 TGCGTCTAGATACATCCATTTCT 57.209 39.130 0.00 0.00 0.00 2.52
8878 9332 7.426929 AAATGCGTCTAGATACATCCATTTC 57.573 36.000 10.00 0.00 0.00 2.17
8879 9333 7.807977 AAAATGCGTCTAGATACATCCATTT 57.192 32.000 10.00 9.00 0.00 2.32
8880 9334 8.150945 ACTAAAATGCGTCTAGATACATCCATT 58.849 33.333 10.00 8.72 0.00 3.16
8881 9335 7.671302 ACTAAAATGCGTCTAGATACATCCAT 58.329 34.615 10.00 4.20 0.00 3.41
8882 9336 7.050970 ACTAAAATGCGTCTAGATACATCCA 57.949 36.000 10.00 0.00 0.00 3.41
8883 9337 7.868415 AGAACTAAAATGCGTCTAGATACATCC 59.132 37.037 10.00 0.00 0.00 3.51
8884 9338 8.804688 AGAACTAAAATGCGTCTAGATACATC 57.195 34.615 10.00 0.00 0.00 3.06
8885 9339 9.900710 CTAGAACTAAAATGCGTCTAGATACAT 57.099 33.333 0.00 0.00 0.00 2.29
8886 9340 9.117183 TCTAGAACTAAAATGCGTCTAGATACA 57.883 33.333 0.00 0.00 32.48 2.29
8890 9344 9.117183 TGTATCTAGAACTAAAATGCGTCTAGA 57.883 33.333 10.27 10.27 38.94 2.43
8891 9345 9.900710 ATGTATCTAGAACTAAAATGCGTCTAG 57.099 33.333 0.00 0.00 0.00 2.43
8892 9346 9.894783 GATGTATCTAGAACTAAAATGCGTCTA 57.105 33.333 0.00 0.00 0.00 2.59
8893 9347 7.868415 GGATGTATCTAGAACTAAAATGCGTCT 59.132 37.037 0.00 0.00 0.00 4.18
8894 9348 7.652105 TGGATGTATCTAGAACTAAAATGCGTC 59.348 37.037 0.00 0.00 0.00 5.19
8895 9349 7.497595 TGGATGTATCTAGAACTAAAATGCGT 58.502 34.615 0.00 0.00 0.00 5.24
8896 9350 7.946655 TGGATGTATCTAGAACTAAAATGCG 57.053 36.000 0.00 0.00 0.00 4.73
8912 9366 9.284968 CGGAGAAATAGGTAAAAATGGATGTAT 57.715 33.333 0.00 0.00 0.00 2.29
8913 9367 8.487848 TCGGAGAAATAGGTAAAAATGGATGTA 58.512 33.333 0.00 0.00 0.00 2.29
8914 9368 7.282450 GTCGGAGAAATAGGTAAAAATGGATGT 59.718 37.037 0.00 0.00 39.69 3.06
8915 9369 7.282224 TGTCGGAGAAATAGGTAAAAATGGATG 59.718 37.037 0.00 0.00 39.69 3.51
8916 9370 7.343357 TGTCGGAGAAATAGGTAAAAATGGAT 58.657 34.615 0.00 0.00 39.69 3.41
8917 9371 6.713276 TGTCGGAGAAATAGGTAAAAATGGA 58.287 36.000 0.00 0.00 39.69 3.41
8918 9372 6.995511 TGTCGGAGAAATAGGTAAAAATGG 57.004 37.500 0.00 0.00 39.69 3.16
8919 9373 8.040716 ACTTGTCGGAGAAATAGGTAAAAATG 57.959 34.615 0.00 0.00 39.69 2.32
8920 9374 9.901172 ATACTTGTCGGAGAAATAGGTAAAAAT 57.099 29.630 0.00 0.00 39.69 1.82
8921 9375 9.729281 AATACTTGTCGGAGAAATAGGTAAAAA 57.271 29.630 0.00 0.00 39.69 1.94
8922 9376 9.729281 AAATACTTGTCGGAGAAATAGGTAAAA 57.271 29.630 0.00 0.00 39.69 1.52
8923 9377 9.729281 AAAATACTTGTCGGAGAAATAGGTAAA 57.271 29.630 0.00 0.00 39.69 2.01
8924 9378 9.374838 GAAAATACTTGTCGGAGAAATAGGTAA 57.625 33.333 0.00 0.00 39.69 2.85
8925 9379 8.533657 TGAAAATACTTGTCGGAGAAATAGGTA 58.466 33.333 0.00 0.00 39.69 3.08
8926 9380 7.391620 TGAAAATACTTGTCGGAGAAATAGGT 58.608 34.615 0.00 0.00 39.69 3.08
8927 9381 7.764443 TCTGAAAATACTTGTCGGAGAAATAGG 59.236 37.037 0.00 0.00 39.69 2.57
8928 9382 8.596380 GTCTGAAAATACTTGTCGGAGAAATAG 58.404 37.037 0.00 0.00 39.69 1.73
8929 9383 7.274904 CGTCTGAAAATACTTGTCGGAGAAATA 59.725 37.037 0.00 0.00 39.69 1.40
8930 9384 6.090898 CGTCTGAAAATACTTGTCGGAGAAAT 59.909 38.462 0.00 0.00 39.69 2.17
8931 9385 5.404366 CGTCTGAAAATACTTGTCGGAGAAA 59.596 40.000 0.00 0.00 39.69 2.52
8932 9386 4.921515 CGTCTGAAAATACTTGTCGGAGAA 59.078 41.667 0.00 0.00 39.69 2.87
8933 9387 4.482386 CGTCTGAAAATACTTGTCGGAGA 58.518 43.478 0.00 0.00 0.00 3.71
8934 9388 3.612860 CCGTCTGAAAATACTTGTCGGAG 59.387 47.826 0.00 0.00 38.03 4.63
8935 9389 3.256383 TCCGTCTGAAAATACTTGTCGGA 59.744 43.478 0.00 0.00 41.50 4.55
8936 9390 3.581755 TCCGTCTGAAAATACTTGTCGG 58.418 45.455 0.00 0.00 37.29 4.79
8937 9391 3.612860 CCTCCGTCTGAAAATACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
8938 9392 3.933332 CCCTCCGTCTGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
8939 9393 3.581332 TCCCTCCGTCTGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
8940 9394 4.184629 CTCCCTCCGTCTGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
8941 9395 3.838903 ACTCCCTCCGTCTGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
8942 9396 3.442076 ACTCCCTCCGTCTGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
8943 9397 3.889520 ACTCCCTCCGTCTGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
8944 9398 3.379372 CGTACTCCCTCCGTCTGAAAATA 59.621 47.826 0.00 0.00 0.00 1.40
8945 9399 2.165845 CGTACTCCCTCCGTCTGAAAAT 59.834 50.000 0.00 0.00 0.00 1.82
8946 9400 1.542915 CGTACTCCCTCCGTCTGAAAA 59.457 52.381 0.00 0.00 0.00 2.29
8947 9401 1.171308 CGTACTCCCTCCGTCTGAAA 58.829 55.000 0.00 0.00 0.00 2.69
8948 9402 0.325933 TCGTACTCCCTCCGTCTGAA 59.674 55.000 0.00 0.00 0.00 3.02
8949 9403 0.325933 TTCGTACTCCCTCCGTCTGA 59.674 55.000 0.00 0.00 0.00 3.27
8950 9404 1.171308 TTTCGTACTCCCTCCGTCTG 58.829 55.000 0.00 0.00 0.00 3.51
8951 9405 2.140839 ATTTCGTACTCCCTCCGTCT 57.859 50.000 0.00 0.00 0.00 4.18
8952 9406 3.379688 ACTTATTTCGTACTCCCTCCGTC 59.620 47.826 0.00 0.00 0.00 4.79
8953 9407 3.129988 CACTTATTTCGTACTCCCTCCGT 59.870 47.826 0.00 0.00 0.00 4.69
8954 9408 3.703420 CACTTATTTCGTACTCCCTCCG 58.297 50.000 0.00 0.00 0.00 4.63
8955 9409 3.118884 TGCACTTATTTCGTACTCCCTCC 60.119 47.826 0.00 0.00 0.00 4.30
8956 9410 4.119442 TGCACTTATTTCGTACTCCCTC 57.881 45.455 0.00 0.00 0.00 4.30
8957 9411 4.755266 ATGCACTTATTTCGTACTCCCT 57.245 40.909 0.00 0.00 0.00 4.20
8958 9412 4.873827 TGAATGCACTTATTTCGTACTCCC 59.126 41.667 0.00 0.00 0.00 4.30
8959 9413 5.502544 GCTGAATGCACTTATTTCGTACTCC 60.503 44.000 0.00 0.00 42.31 3.85
8960 9414 5.493735 GCTGAATGCACTTATTTCGTACTC 58.506 41.667 0.00 0.00 42.31 2.59
8961 9415 4.032900 CGCTGAATGCACTTATTTCGTACT 59.967 41.667 0.00 0.00 43.06 2.73
8962 9416 4.263800 CGCTGAATGCACTTATTTCGTAC 58.736 43.478 0.00 0.00 43.06 3.67
8963 9417 3.308595 CCGCTGAATGCACTTATTTCGTA 59.691 43.478 0.00 0.00 43.06 3.43
8964 9418 2.095853 CCGCTGAATGCACTTATTTCGT 59.904 45.455 0.00 0.00 43.06 3.85
8965 9419 2.708514 CCGCTGAATGCACTTATTTCG 58.291 47.619 0.00 0.00 43.06 3.46
8982 9436 3.393800 AGATGATATGTAAGTGTGCCGC 58.606 45.455 0.00 0.00 0.00 6.53
9332 9788 9.658475 GTTTTGGCAAATTAAATTAAACTGTCC 57.342 29.630 14.29 0.00 0.00 4.02
9393 9849 9.703892 TTATCATTAATCACCAAACAAAACCAG 57.296 29.630 0.00 0.00 0.00 4.00
9498 9954 0.897863 AAGCACAAAAGGCGGGCATA 60.898 50.000 3.78 0.00 36.08 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.