Multiple sequence alignment - TraesCS2B01G217100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G217100 chr2B 100.000 4257 0 0 1 4257 204919520 204915264 0.000000e+00 7862.0
1 TraesCS2B01G217100 chr2B 97.753 3071 47 12 829 3890 203905423 203902366 0.000000e+00 5269.0
2 TraesCS2B01G217100 chr2B 90.843 830 49 15 1 824 697136913 697137721 0.000000e+00 1086.0
3 TraesCS2B01G217100 chr2B 93.297 731 43 5 1 727 96147129 96147857 0.000000e+00 1074.0
4 TraesCS2B01G217100 chr2B 76.588 1149 204 44 2230 3355 186403487 186404593 4.780000e-159 571.0
5 TraesCS2B01G217100 chr2B 76.432 1065 193 39 2207 3255 185762098 185761076 1.360000e-144 523.0
6 TraesCS2B01G217100 chr2B 82.687 335 52 4 3928 4257 43229136 43228803 4.160000e-75 292.0
7 TraesCS2B01G217100 chr2B 85.443 158 18 5 3567 3722 441867996 441867842 4.410000e-35 159.0
8 TraesCS2B01G217100 chr2B 79.612 206 33 6 2245 2444 799289779 799289981 5.740000e-29 139.0
9 TraesCS2B01G217100 chr2B 75.463 216 44 7 2250 2459 751812553 751812765 3.500000e-16 97.1
10 TraesCS2B01G217100 chr2B 75.000 228 43 12 2240 2459 751839984 751840205 4.530000e-15 93.5
11 TraesCS2B01G217100 chr6B 96.995 832 22 2 1 829 666777348 666778179 0.000000e+00 1395.0
12 TraesCS2B01G217100 chr7B 95.066 831 28 4 1 827 567570589 567571410 0.000000e+00 1295.0
13 TraesCS2B01G217100 chr7B 95.429 722 26 4 113 829 403410680 403411399 0.000000e+00 1144.0
14 TraesCS2B01G217100 chr7B 87.892 223 26 1 3567 3788 454528584 454528362 1.170000e-65 261.0
15 TraesCS2B01G217100 chr1B 93.870 832 43 6 1 828 527381126 527381953 0.000000e+00 1247.0
16 TraesCS2B01G217100 chr1B 92.197 833 37 8 1 827 108552472 108553282 0.000000e+00 1153.0
17 TraesCS2B01G217100 chr1B 95.994 699 24 3 134 829 660690713 660690016 0.000000e+00 1133.0
18 TraesCS2B01G217100 chr1B 76.611 1381 250 47 1999 3340 275458610 275459956 0.000000e+00 693.0
19 TraesCS2B01G217100 chr1B 76.843 1343 241 45 2035 3340 275553601 275554910 0.000000e+00 693.0
20 TraesCS2B01G217100 chr1B 76.539 1381 251 47 1999 3340 275358620 275359966 0.000000e+00 688.0
21 TraesCS2B01G217100 chr1B 76.694 1343 244 44 2035 3340 275672222 275673532 0.000000e+00 682.0
22 TraesCS2B01G217100 chr5B 89.172 785 70 10 60 829 92842246 92841462 0.000000e+00 965.0
23 TraesCS2B01G217100 chr5B 79.940 334 47 10 3928 4257 494034304 494034621 1.190000e-55 228.0
24 TraesCS2B01G217100 chr1A 76.392 1347 240 52 2035 3340 246129026 246127717 0.000000e+00 654.0
25 TraesCS2B01G217100 chr1A 82.511 223 29 5 3567 3787 278365275 278365489 2.020000e-43 187.0
26 TraesCS2B01G217100 chr1A 86.842 76 9 1 3715 3789 395201281 395201206 2.730000e-12 84.2
27 TraesCS2B01G217100 chr2A 77.360 1091 199 32 2205 3277 610177129 610178189 1.690000e-168 603.0
28 TraesCS2B01G217100 chr2A 81.548 336 54 7 3928 4257 93878186 93878519 1.950000e-68 270.0
29 TraesCS2B01G217100 chr2A 89.401 217 19 4 3573 3788 715268381 715268168 1.950000e-68 270.0
30 TraesCS2B01G217100 chr2A 82.727 220 29 8 3568 3786 566454629 566454418 2.020000e-43 187.0
31 TraesCS2B01G217100 chr2A 74.908 271 61 5 2245 2512 762497571 762497837 2.690000e-22 117.0
32 TraesCS2B01G217100 chr2A 73.953 215 45 9 2252 2459 746849162 746849372 4.560000e-10 76.8
33 TraesCS2B01G217100 chr2D 76.895 1095 191 38 2207 3280 131642728 131641675 7.990000e-157 564.0
34 TraesCS2B01G217100 chr2D 77.241 145 27 5 2318 2459 616632104 616632245 3.530000e-11 80.5
35 TraesCS2B01G217100 chr2D 78.095 105 22 1 2578 2682 381244591 381244488 9.880000e-07 65.8
36 TraesCS2B01G217100 chr5D 83.591 323 47 6 3928 4247 423970822 423970503 8.950000e-77 298.0
37 TraesCS2B01G217100 chr3B 82.335 334 53 6 3928 4257 377419676 377420007 6.970000e-73 285.0
38 TraesCS2B01G217100 chr3B 81.791 335 48 11 3928 4257 102576566 102576240 7.020000e-68 268.0
39 TraesCS2B01G217100 chr6A 82.716 324 44 7 3928 4243 606307025 606307344 1.170000e-70 278.0
40 TraesCS2B01G217100 chr6A 81.858 226 32 5 3567 3790 425891455 425891237 9.400000e-42 182.0
41 TraesCS2B01G217100 chr3D 81.602 337 48 12 3928 4257 349971336 349971665 2.520000e-67 267.0
42 TraesCS2B01G217100 chr4B 80.473 338 54 11 3929 4257 93621365 93621699 9.140000e-62 248.0
43 TraesCS2B01G217100 chr4A 79.710 345 47 13 3928 4257 459671526 459671190 1.190000e-55 228.0
44 TraesCS2B01G217100 chr7A 82.960 223 28 5 3567 3787 252951545 252951759 4.340000e-45 193.0
45 TraesCS2B01G217100 chr6D 85.635 181 20 5 3567 3746 86805779 86805604 7.270000e-43 185.0
46 TraesCS2B01G217100 chrUn 78.378 222 39 6 2245 2460 183018640 183018422 7.420000e-28 135.0
47 TraesCS2B01G217100 chr7D 78.673 211 40 4 3928 4134 104138131 104138340 7.420000e-28 135.0
48 TraesCS2B01G217100 chr1D 86.842 76 9 1 3715 3789 314730304 314730229 2.730000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G217100 chr2B 204915264 204919520 4256 True 7862 7862 100.000 1 4257 1 chr2B.!!$R4 4256
1 TraesCS2B01G217100 chr2B 203902366 203905423 3057 True 5269 5269 97.753 829 3890 1 chr2B.!!$R3 3061
2 TraesCS2B01G217100 chr2B 697136913 697137721 808 False 1086 1086 90.843 1 824 1 chr2B.!!$F3 823
3 TraesCS2B01G217100 chr2B 96147129 96147857 728 False 1074 1074 93.297 1 727 1 chr2B.!!$F1 726
4 TraesCS2B01G217100 chr2B 186403487 186404593 1106 False 571 571 76.588 2230 3355 1 chr2B.!!$F2 1125
5 TraesCS2B01G217100 chr2B 185761076 185762098 1022 True 523 523 76.432 2207 3255 1 chr2B.!!$R2 1048
6 TraesCS2B01G217100 chr6B 666777348 666778179 831 False 1395 1395 96.995 1 829 1 chr6B.!!$F1 828
7 TraesCS2B01G217100 chr7B 567570589 567571410 821 False 1295 1295 95.066 1 827 1 chr7B.!!$F2 826
8 TraesCS2B01G217100 chr7B 403410680 403411399 719 False 1144 1144 95.429 113 829 1 chr7B.!!$F1 716
9 TraesCS2B01G217100 chr1B 527381126 527381953 827 False 1247 1247 93.870 1 828 1 chr1B.!!$F6 827
10 TraesCS2B01G217100 chr1B 108552472 108553282 810 False 1153 1153 92.197 1 827 1 chr1B.!!$F1 826
11 TraesCS2B01G217100 chr1B 660690016 660690713 697 True 1133 1133 95.994 134 829 1 chr1B.!!$R1 695
12 TraesCS2B01G217100 chr1B 275458610 275459956 1346 False 693 693 76.611 1999 3340 1 chr1B.!!$F3 1341
13 TraesCS2B01G217100 chr1B 275553601 275554910 1309 False 693 693 76.843 2035 3340 1 chr1B.!!$F4 1305
14 TraesCS2B01G217100 chr1B 275358620 275359966 1346 False 688 688 76.539 1999 3340 1 chr1B.!!$F2 1341
15 TraesCS2B01G217100 chr1B 275672222 275673532 1310 False 682 682 76.694 2035 3340 1 chr1B.!!$F5 1305
16 TraesCS2B01G217100 chr5B 92841462 92842246 784 True 965 965 89.172 60 829 1 chr5B.!!$R1 769
17 TraesCS2B01G217100 chr1A 246127717 246129026 1309 True 654 654 76.392 2035 3340 1 chr1A.!!$R1 1305
18 TraesCS2B01G217100 chr2A 610177129 610178189 1060 False 603 603 77.360 2205 3277 1 chr2A.!!$F2 1072
19 TraesCS2B01G217100 chr2D 131641675 131642728 1053 True 564 564 76.895 2207 3280 1 chr2D.!!$R1 1073

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
722 757 2.882927 AAAACCCCGAAGAAACAAGC 57.117 45.000 0.0 0.0 0.0 4.01 F
1992 2031 4.933505 TTCACTCTCATATCAGCCTGAG 57.066 45.455 0.0 0.0 40.2 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2612 2685 3.240134 GAGACGGGCCAGTCAAGCA 62.240 63.158 33.24 0.0 43.24 3.91 R
3560 3656 0.301687 CACGTGTGACACTTGCAGAC 59.698 55.000 14.42 0.0 31.34 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.953868 CCCGTGTGCGTCCGAACA 62.954 66.667 0.00 0.00 36.15 3.18
232 240 3.187022 GCGGCAAATCTTCAAAAGCATTT 59.813 39.130 0.00 0.00 42.41 2.32
539 560 7.247728 TGAAGATTTTTGTAATATGCGGTGAC 58.752 34.615 0.00 0.00 0.00 3.67
722 757 2.882927 AAAACCCCGAAGAAACAAGC 57.117 45.000 0.00 0.00 0.00 4.01
1992 2031 4.933505 TTCACTCTCATATCAGCCTGAG 57.066 45.455 0.00 0.00 40.20 3.35
2214 2276 9.862149 TTCCTTCCTTCTCTGTTAAAGTAATTT 57.138 29.630 0.00 0.00 0.00 1.82
2495 2562 9.924650 CAAAAACTAACACTAGAGGTATGTACT 57.075 33.333 0.00 0.00 0.00 2.73
3302 3395 6.296026 TGTACTATGATATCCTTTGCCCAAC 58.704 40.000 0.00 0.00 0.00 3.77
3367 3460 5.233957 TGCATTTGTGCACTATGTGTATC 57.766 39.130 23.94 13.29 40.23 2.24
3387 3483 9.171701 GTGTATCGACTTCTGACTATTTGTATC 57.828 37.037 0.00 0.00 0.00 2.24
3415 3511 7.307493 TGTGTATCAACATCTGACTATTTGC 57.693 36.000 0.00 0.00 38.08 3.68
3419 3515 9.612066 TGTATCAACATCTGACTATTTGCATTA 57.388 29.630 0.00 0.00 36.69 1.90
3491 3587 6.588756 CAGTATGCAAAATGTCTTGATGCTTT 59.411 34.615 0.00 0.00 37.86 3.51
3497 3593 6.815142 GCAAAATGTCTTGATGCTTTCCTATT 59.185 34.615 0.00 0.00 34.29 1.73
3507 3603 7.230849 TGATGCTTTCCTATTGTTCATGTTT 57.769 32.000 0.00 0.00 0.00 2.83
3508 3604 7.669427 TGATGCTTTCCTATTGTTCATGTTTT 58.331 30.769 0.00 0.00 0.00 2.43
3509 3605 7.599621 TGATGCTTTCCTATTGTTCATGTTTTG 59.400 33.333 0.00 0.00 0.00 2.44
3510 3606 6.222389 TGCTTTCCTATTGTTCATGTTTTGG 58.778 36.000 0.00 0.00 0.00 3.28
3511 3607 6.183360 TGCTTTCCTATTGTTCATGTTTTGGT 60.183 34.615 0.00 0.00 0.00 3.67
3512 3608 6.705825 GCTTTCCTATTGTTCATGTTTTGGTT 59.294 34.615 0.00 0.00 0.00 3.67
3513 3609 7.870445 GCTTTCCTATTGTTCATGTTTTGGTTA 59.130 33.333 0.00 0.00 0.00 2.85
3514 3610 9.927668 CTTTCCTATTGTTCATGTTTTGGTTAT 57.072 29.630 0.00 0.00 0.00 1.89
3515 3611 9.921637 TTTCCTATTGTTCATGTTTTGGTTATC 57.078 29.630 0.00 0.00 0.00 1.75
3516 3612 8.642935 TCCTATTGTTCATGTTTTGGTTATCA 57.357 30.769 0.00 0.00 0.00 2.15
3517 3613 9.083422 TCCTATTGTTCATGTTTTGGTTATCAA 57.917 29.630 0.00 0.00 0.00 2.57
3518 3614 9.139174 CCTATTGTTCATGTTTTGGTTATCAAC 57.861 33.333 0.00 0.00 34.67 3.18
3519 3615 9.912634 CTATTGTTCATGTTTTGGTTATCAACT 57.087 29.630 0.00 0.00 34.67 3.16
3522 3618 8.006298 TGTTCATGTTTTGGTTATCAACTTCT 57.994 30.769 0.00 0.00 34.67 2.85
3537 3633 6.346477 TCAACTTCTGTCTAGCATGTTACT 57.654 37.500 0.00 0.00 0.00 2.24
3538 3634 6.390721 TCAACTTCTGTCTAGCATGTTACTC 58.609 40.000 0.00 0.00 0.00 2.59
3544 3640 5.124936 TCTGTCTAGCATGTTACTCGCTTTA 59.875 40.000 4.61 0.00 37.20 1.85
3604 3700 3.751621 CATGAAGCAATTTCGTCCTGAC 58.248 45.455 0.00 0.00 38.71 3.51
3679 3776 4.952071 TGGCAAATTTCTGTTTGGATGA 57.048 36.364 0.00 0.00 39.03 2.92
3705 3802 6.446659 AGTTTCAGTTGTTTTTGTGTTTCG 57.553 33.333 0.00 0.00 0.00 3.46
3711 3808 7.338462 TCAGTTGTTTTTGTGTTTCGTTTTTC 58.662 30.769 0.00 0.00 0.00 2.29
3713 3810 7.525854 CAGTTGTTTTTGTGTTTCGTTTTTCTC 59.474 33.333 0.00 0.00 0.00 2.87
3722 3820 1.438651 TCGTTTTTCTCGGATGGCAG 58.561 50.000 0.00 0.00 0.00 4.85
3749 3847 4.215109 AGTTGTAAAAATGTCAGGGCAGT 58.785 39.130 0.00 0.00 0.00 4.40
3757 3855 2.543777 TGTCAGGGCAGTGTTACTTC 57.456 50.000 0.00 0.00 0.00 3.01
3759 3857 0.320421 TCAGGGCAGTGTTACTTCGC 60.320 55.000 0.00 0.00 0.00 4.70
3789 3887 3.772387 TGTGGCACTTATCATTTGGGAA 58.228 40.909 19.83 0.00 0.00 3.97
3790 3888 4.352009 TGTGGCACTTATCATTTGGGAAT 58.648 39.130 19.83 0.00 0.00 3.01
3847 3945 2.368439 TGAGCTGCAACAACATATCCC 58.632 47.619 1.02 0.00 0.00 3.85
3866 3964 2.231235 CCCGCTTATGTTTTGAAGCCTT 59.769 45.455 1.30 0.00 44.25 4.35
3875 3973 6.715347 ATGTTTTGAAGCCTTTGTAACTCT 57.285 33.333 0.00 0.00 0.00 3.24
3890 3988 5.784177 TGTAACTCTCAGCCACTAGAAAAG 58.216 41.667 0.00 0.00 0.00 2.27
3891 3989 4.965200 AACTCTCAGCCACTAGAAAAGT 57.035 40.909 0.00 0.00 39.81 2.66
3892 3990 4.529109 ACTCTCAGCCACTAGAAAAGTC 57.471 45.455 0.00 0.00 35.76 3.01
3893 3991 4.156477 ACTCTCAGCCACTAGAAAAGTCT 58.844 43.478 0.00 0.00 35.76 3.24
3894 3992 4.591072 ACTCTCAGCCACTAGAAAAGTCTT 59.409 41.667 0.00 0.00 35.76 3.01
3895 3993 5.071115 ACTCTCAGCCACTAGAAAAGTCTTT 59.929 40.000 0.00 0.00 35.76 2.52
3896 3994 5.300752 TCTCAGCCACTAGAAAAGTCTTTG 58.699 41.667 0.00 0.00 35.76 2.77
3897 3995 5.036117 TCAGCCACTAGAAAAGTCTTTGT 57.964 39.130 0.00 0.00 35.76 2.83
3898 3996 5.437060 TCAGCCACTAGAAAAGTCTTTGTT 58.563 37.500 0.00 0.00 35.76 2.83
3899 3997 5.527582 TCAGCCACTAGAAAAGTCTTTGTTC 59.472 40.000 0.00 0.00 35.76 3.18
3900 3998 5.529060 CAGCCACTAGAAAAGTCTTTGTTCT 59.471 40.000 0.00 1.89 35.76 3.01
3901 3999 5.529060 AGCCACTAGAAAAGTCTTTGTTCTG 59.471 40.000 9.04 3.70 35.76 3.02
3902 4000 5.752712 CCACTAGAAAAGTCTTTGTTCTGC 58.247 41.667 9.04 0.00 35.76 4.26
3903 4001 5.278022 CCACTAGAAAAGTCTTTGTTCTGCC 60.278 44.000 9.04 0.00 35.76 4.85
3904 4002 5.296780 CACTAGAAAAGTCTTTGTTCTGCCA 59.703 40.000 9.04 0.00 35.76 4.92
3905 4003 4.639135 AGAAAAGTCTTTGTTCTGCCAC 57.361 40.909 0.00 0.00 30.48 5.01
3906 4004 4.273318 AGAAAAGTCTTTGTTCTGCCACT 58.727 39.130 0.00 0.00 30.48 4.00
3907 4005 5.437060 AGAAAAGTCTTTGTTCTGCCACTA 58.563 37.500 0.00 0.00 30.48 2.74
3908 4006 5.529060 AGAAAAGTCTTTGTTCTGCCACTAG 59.471 40.000 0.00 0.00 30.48 2.57
3909 4007 4.689612 AAGTCTTTGTTCTGCCACTAGA 57.310 40.909 0.00 0.00 0.00 2.43
3910 4008 4.689612 AGTCTTTGTTCTGCCACTAGAA 57.310 40.909 0.00 0.00 34.46 2.10
3911 4009 5.036117 AGTCTTTGTTCTGCCACTAGAAA 57.964 39.130 0.00 0.00 38.33 2.52
3912 4010 5.437060 AGTCTTTGTTCTGCCACTAGAAAA 58.563 37.500 0.00 0.00 38.33 2.29
3913 4011 5.885912 AGTCTTTGTTCTGCCACTAGAAAAA 59.114 36.000 0.00 0.00 38.33 1.94
3914 4012 6.547510 AGTCTTTGTTCTGCCACTAGAAAAAT 59.452 34.615 0.00 0.00 38.33 1.82
3915 4013 6.638468 GTCTTTGTTCTGCCACTAGAAAAATG 59.362 38.462 0.00 0.00 38.33 2.32
3916 4014 5.452078 TTGTTCTGCCACTAGAAAAATGG 57.548 39.130 0.00 0.00 38.33 3.16
3917 4015 4.469657 TGTTCTGCCACTAGAAAAATGGT 58.530 39.130 0.00 0.00 38.33 3.55
3918 4016 4.892934 TGTTCTGCCACTAGAAAAATGGTT 59.107 37.500 0.00 0.00 38.33 3.67
3919 4017 5.009610 TGTTCTGCCACTAGAAAAATGGTTC 59.990 40.000 0.00 0.00 38.33 3.62
3920 4018 4.724399 TCTGCCACTAGAAAAATGGTTCA 58.276 39.130 0.00 0.00 35.79 3.18
3921 4019 5.324409 TCTGCCACTAGAAAAATGGTTCAT 58.676 37.500 0.00 0.00 35.79 2.57
3922 4020 5.183713 TCTGCCACTAGAAAAATGGTTCATG 59.816 40.000 0.00 0.00 35.79 3.07
3923 4021 4.176271 GCCACTAGAAAAATGGTTCATGC 58.824 43.478 0.00 0.00 35.79 4.06
3924 4022 4.747810 CCACTAGAAAAATGGTTCATGCC 58.252 43.478 0.00 0.00 0.00 4.40
3925 4023 4.381932 CCACTAGAAAAATGGTTCATGCCC 60.382 45.833 0.00 0.00 0.00 5.36
3926 4024 4.463891 CACTAGAAAAATGGTTCATGCCCT 59.536 41.667 0.00 0.00 0.00 5.19
3927 4025 3.967332 AGAAAAATGGTTCATGCCCTG 57.033 42.857 3.34 0.00 0.00 4.45
3928 4026 3.509442 AGAAAAATGGTTCATGCCCTGA 58.491 40.909 3.34 0.00 0.00 3.86
3929 4027 3.903090 AGAAAAATGGTTCATGCCCTGAA 59.097 39.130 3.34 0.00 41.61 3.02
3930 4028 4.347583 AGAAAAATGGTTCATGCCCTGAAA 59.652 37.500 0.79 0.00 45.27 2.69
3931 4029 4.703379 AAAATGGTTCATGCCCTGAAAA 57.297 36.364 0.79 0.00 45.27 2.29
3932 4030 4.914177 AAATGGTTCATGCCCTGAAAAT 57.086 36.364 0.79 0.00 45.27 1.82
3933 4031 6.371595 AAAATGGTTCATGCCCTGAAAATA 57.628 33.333 0.79 0.00 45.27 1.40
3934 4032 5.343307 AATGGTTCATGCCCTGAAAATAC 57.657 39.130 0.79 0.00 45.27 1.89
3935 4033 3.772387 TGGTTCATGCCCTGAAAATACA 58.228 40.909 0.79 0.00 45.27 2.29
3936 4034 3.509575 TGGTTCATGCCCTGAAAATACAC 59.490 43.478 0.79 0.00 45.27 2.90
3937 4035 3.509575 GGTTCATGCCCTGAAAATACACA 59.490 43.478 0.79 0.00 45.27 3.72
3938 4036 4.021544 GGTTCATGCCCTGAAAATACACAA 60.022 41.667 0.79 0.00 45.27 3.33
3939 4037 5.163513 GTTCATGCCCTGAAAATACACAAG 58.836 41.667 0.79 0.00 45.27 3.16
3940 4038 4.661222 TCATGCCCTGAAAATACACAAGA 58.339 39.130 0.00 0.00 0.00 3.02
3941 4039 4.701651 TCATGCCCTGAAAATACACAAGAG 59.298 41.667 0.00 0.00 0.00 2.85
3942 4040 2.819608 TGCCCTGAAAATACACAAGAGC 59.180 45.455 0.00 0.00 0.00 4.09
3943 4041 3.084786 GCCCTGAAAATACACAAGAGCT 58.915 45.455 0.00 0.00 0.00 4.09
3944 4042 3.127721 GCCCTGAAAATACACAAGAGCTC 59.872 47.826 5.27 5.27 0.00 4.09
3945 4043 4.583871 CCCTGAAAATACACAAGAGCTCT 58.416 43.478 11.45 11.45 0.00 4.09
3946 4044 5.006386 CCCTGAAAATACACAAGAGCTCTT 58.994 41.667 23.49 23.49 36.45 2.85
3956 4054 3.072476 GAGCTCTTGGGTGCTCCA 58.928 61.111 6.43 0.85 46.93 3.86
3957 4055 1.606531 GAGCTCTTGGGTGCTCCAT 59.393 57.895 6.43 0.00 46.93 3.41
3958 4056 0.833287 GAGCTCTTGGGTGCTCCATA 59.167 55.000 6.43 0.00 46.93 2.74
3959 4057 0.543749 AGCTCTTGGGTGCTCCATAC 59.456 55.000 7.20 0.00 46.52 2.39
3960 4058 0.464554 GCTCTTGGGTGCTCCATACC 60.465 60.000 7.20 0.00 46.52 2.73
3968 4066 1.549170 GGTGCTCCATACCCCTATACG 59.451 57.143 0.00 0.00 31.89 3.06
3969 4067 2.522185 GTGCTCCATACCCCTATACGA 58.478 52.381 0.00 0.00 0.00 3.43
3970 4068 2.895404 GTGCTCCATACCCCTATACGAA 59.105 50.000 0.00 0.00 0.00 3.85
3971 4069 3.514309 GTGCTCCATACCCCTATACGAAT 59.486 47.826 0.00 0.00 0.00 3.34
3972 4070 4.708421 GTGCTCCATACCCCTATACGAATA 59.292 45.833 0.00 0.00 0.00 1.75
3973 4071 5.363005 GTGCTCCATACCCCTATACGAATAT 59.637 44.000 0.00 0.00 0.00 1.28
3974 4072 5.962031 TGCTCCATACCCCTATACGAATATT 59.038 40.000 0.00 0.00 0.00 1.28
3975 4073 7.069085 GTGCTCCATACCCCTATACGAATATTA 59.931 40.741 0.00 0.00 0.00 0.98
3976 4074 7.620491 TGCTCCATACCCCTATACGAATATTAA 59.380 37.037 0.00 0.00 0.00 1.40
3977 4075 8.480501 GCTCCATACCCCTATACGAATATTAAA 58.519 37.037 0.00 0.00 0.00 1.52
3978 4076 9.813446 CTCCATACCCCTATACGAATATTAAAC 57.187 37.037 0.00 0.00 0.00 2.01
3979 4077 8.469200 TCCATACCCCTATACGAATATTAAACG 58.531 37.037 0.00 0.00 0.00 3.60
3980 4078 8.253113 CCATACCCCTATACGAATATTAAACGT 58.747 37.037 6.04 6.04 42.70 3.99
3992 4090 8.664798 ACGAATATTAAACGTAAAAAGTACCCC 58.335 33.333 0.00 0.00 38.47 4.95
3993 4091 8.122330 CGAATATTAAACGTAAAAAGTACCCCC 58.878 37.037 0.00 0.00 0.00 5.40
3994 4092 8.876303 AATATTAAACGTAAAAAGTACCCCCA 57.124 30.769 0.00 0.00 0.00 4.96
3995 4093 8.876303 ATATTAAACGTAAAAAGTACCCCCAA 57.124 30.769 0.00 0.00 0.00 4.12
3996 4094 7.594351 ATTAAACGTAAAAAGTACCCCCAAA 57.406 32.000 0.00 0.00 0.00 3.28
3997 4095 5.929058 AAACGTAAAAAGTACCCCCAAAA 57.071 34.783 0.00 0.00 0.00 2.44
3998 4096 5.929058 AACGTAAAAAGTACCCCCAAAAA 57.071 34.783 0.00 0.00 0.00 1.94
3999 4097 6.482898 AACGTAAAAAGTACCCCCAAAAAT 57.517 33.333 0.00 0.00 0.00 1.82
4000 4098 6.482898 ACGTAAAAAGTACCCCCAAAAATT 57.517 33.333 0.00 0.00 0.00 1.82
4001 4099 7.594351 ACGTAAAAAGTACCCCCAAAAATTA 57.406 32.000 0.00 0.00 0.00 1.40
4002 4100 8.192743 ACGTAAAAAGTACCCCCAAAAATTAT 57.807 30.769 0.00 0.00 0.00 1.28
4003 4101 8.649591 ACGTAAAAAGTACCCCCAAAAATTATT 58.350 29.630 0.00 0.00 0.00 1.40
4004 4102 9.491675 CGTAAAAAGTACCCCCAAAAATTATTT 57.508 29.630 0.00 0.00 0.00 1.40
4031 4129 7.809546 TTTTTAAATTTGGGGATGTCAAACC 57.190 32.000 0.00 0.00 37.00 3.27
4032 4130 6.755542 TTTAAATTTGGGGATGTCAAACCT 57.244 33.333 0.00 0.00 37.00 3.50
4033 4131 4.622260 AAATTTGGGGATGTCAAACCTG 57.378 40.909 0.00 0.00 37.00 4.00
4034 4132 2.008242 TTTGGGGATGTCAAACCTGG 57.992 50.000 0.00 0.00 0.00 4.45
4035 4133 0.114168 TTGGGGATGTCAAACCTGGG 59.886 55.000 0.00 0.00 0.00 4.45
4036 4134 1.682344 GGGGATGTCAAACCTGGGC 60.682 63.158 0.00 0.00 0.00 5.36
4037 4135 1.384191 GGGATGTCAAACCTGGGCT 59.616 57.895 0.00 0.00 0.00 5.19
4038 4136 0.681243 GGGATGTCAAACCTGGGCTC 60.681 60.000 0.00 0.00 0.00 4.70
4039 4137 0.329596 GGATGTCAAACCTGGGCTCT 59.670 55.000 0.00 0.00 0.00 4.09
4040 4138 1.680249 GGATGTCAAACCTGGGCTCTC 60.680 57.143 0.00 0.00 0.00 3.20
4041 4139 0.036010 ATGTCAAACCTGGGCTCTCG 60.036 55.000 0.00 0.00 0.00 4.04
4042 4140 1.118965 TGTCAAACCTGGGCTCTCGA 61.119 55.000 0.00 0.00 0.00 4.04
4043 4141 0.250513 GTCAAACCTGGGCTCTCGAT 59.749 55.000 0.00 0.00 0.00 3.59
4044 4142 0.537188 TCAAACCTGGGCTCTCGATC 59.463 55.000 0.00 0.00 0.00 3.69
4045 4143 0.539051 CAAACCTGGGCTCTCGATCT 59.461 55.000 0.00 0.00 0.00 2.75
4046 4144 1.757118 CAAACCTGGGCTCTCGATCTA 59.243 52.381 0.00 0.00 0.00 1.98
4047 4145 1.404843 AACCTGGGCTCTCGATCTAC 58.595 55.000 0.00 0.00 0.00 2.59
4048 4146 0.553819 ACCTGGGCTCTCGATCTACT 59.446 55.000 0.00 0.00 0.00 2.57
4049 4147 1.243902 CCTGGGCTCTCGATCTACTC 58.756 60.000 0.00 0.00 0.00 2.59
4050 4148 1.243902 CTGGGCTCTCGATCTACTCC 58.756 60.000 0.00 0.00 0.00 3.85
4051 4149 0.178987 TGGGCTCTCGATCTACTCCC 60.179 60.000 0.00 0.00 0.00 4.30
4052 4150 1.238625 GGGCTCTCGATCTACTCCCG 61.239 65.000 0.00 0.00 0.00 5.14
4053 4151 0.535553 GGCTCTCGATCTACTCCCGT 60.536 60.000 0.00 0.00 0.00 5.28
4054 4152 0.589223 GCTCTCGATCTACTCCCGTG 59.411 60.000 0.00 0.00 0.00 4.94
4055 4153 0.589223 CTCTCGATCTACTCCCGTGC 59.411 60.000 0.00 0.00 0.00 5.34
4056 4154 1.158484 TCTCGATCTACTCCCGTGCG 61.158 60.000 0.00 0.00 0.00 5.34
4057 4155 1.153309 TCGATCTACTCCCGTGCGA 60.153 57.895 0.00 0.00 0.00 5.10
4058 4156 0.745486 TCGATCTACTCCCGTGCGAA 60.745 55.000 0.00 0.00 0.00 4.70
4059 4157 0.099968 CGATCTACTCCCGTGCGAAA 59.900 55.000 0.00 0.00 0.00 3.46
4060 4158 1.269102 CGATCTACTCCCGTGCGAAAT 60.269 52.381 0.00 0.00 0.00 2.17
4061 4159 2.798499 CGATCTACTCCCGTGCGAAATT 60.798 50.000 0.00 0.00 0.00 1.82
4062 4160 2.754946 TCTACTCCCGTGCGAAATTT 57.245 45.000 0.00 0.00 0.00 1.82
4063 4161 2.613691 TCTACTCCCGTGCGAAATTTC 58.386 47.619 8.20 8.20 0.00 2.17
4077 4175 5.321983 CGAAATTTCGTTCAAAAATGCCA 57.678 34.783 28.21 0.00 45.09 4.92
4078 4176 5.129834 CGAAATTTCGTTCAAAAATGCCAC 58.870 37.500 28.21 0.00 45.09 5.01
4079 4177 4.707210 AATTTCGTTCAAAAATGCCACG 57.293 36.364 0.00 0.00 0.00 4.94
4080 4178 3.422417 TTTCGTTCAAAAATGCCACGA 57.578 38.095 0.00 0.00 38.07 4.35
4081 4179 3.422417 TTCGTTCAAAAATGCCACGAA 57.578 38.095 1.52 1.52 45.07 3.85
4082 4180 3.422417 TCGTTCAAAAATGCCACGAAA 57.578 38.095 0.00 0.00 36.96 3.46
4083 4181 3.109619 TCGTTCAAAAATGCCACGAAAC 58.890 40.909 0.00 0.00 36.96 2.78
4084 4182 2.854777 CGTTCAAAAATGCCACGAAACA 59.145 40.909 0.00 0.00 32.51 2.83
4085 4183 3.489047 CGTTCAAAAATGCCACGAAACAT 59.511 39.130 0.00 0.00 32.51 2.71
4086 4184 4.677378 CGTTCAAAAATGCCACGAAACATA 59.323 37.500 0.00 0.00 32.51 2.29
4087 4185 5.344665 CGTTCAAAAATGCCACGAAACATAT 59.655 36.000 0.00 0.00 32.51 1.78
4088 4186 6.452350 CGTTCAAAAATGCCACGAAACATATC 60.452 38.462 0.00 0.00 32.51 1.63
4089 4187 5.406649 TCAAAAATGCCACGAAACATATCC 58.593 37.500 0.00 0.00 0.00 2.59
4090 4188 5.047731 TCAAAAATGCCACGAAACATATCCA 60.048 36.000 0.00 0.00 0.00 3.41
4091 4189 4.370364 AAATGCCACGAAACATATCCAC 57.630 40.909 0.00 0.00 0.00 4.02
4092 4190 1.364721 TGCCACGAAACATATCCACG 58.635 50.000 0.00 0.00 0.00 4.94
4093 4191 0.655733 GCCACGAAACATATCCACGG 59.344 55.000 0.00 0.00 0.00 4.94
4094 4192 1.295792 CCACGAAACATATCCACGGG 58.704 55.000 0.00 0.00 0.00 5.28
4095 4193 1.134640 CCACGAAACATATCCACGGGA 60.135 52.381 0.00 0.00 35.55 5.14
4096 4194 2.623535 CACGAAACATATCCACGGGAA 58.376 47.619 0.00 0.00 34.34 3.97
4097 4195 2.607635 CACGAAACATATCCACGGGAAG 59.392 50.000 0.00 0.00 34.34 3.46
4098 4196 2.210116 CGAAACATATCCACGGGAAGG 58.790 52.381 0.00 0.00 34.34 3.46
4099 4197 2.159014 CGAAACATATCCACGGGAAGGA 60.159 50.000 0.00 0.00 39.97 3.36
4100 4198 3.680475 CGAAACATATCCACGGGAAGGAA 60.680 47.826 0.00 0.00 38.93 3.36
4101 4199 4.266714 GAAACATATCCACGGGAAGGAAA 58.733 43.478 0.00 0.00 38.93 3.13
4102 4200 4.519906 AACATATCCACGGGAAGGAAAT 57.480 40.909 0.00 0.00 38.93 2.17
4103 4201 5.640158 AACATATCCACGGGAAGGAAATA 57.360 39.130 0.00 0.00 38.93 1.40
4104 4202 5.843019 ACATATCCACGGGAAGGAAATAT 57.157 39.130 0.00 0.00 38.93 1.28
4105 4203 6.200878 ACATATCCACGGGAAGGAAATATT 57.799 37.500 0.00 0.00 38.93 1.28
4106 4204 6.003950 ACATATCCACGGGAAGGAAATATTG 58.996 40.000 0.00 0.00 38.93 1.90
4107 4205 4.519906 ATCCACGGGAAGGAAATATTGT 57.480 40.909 0.00 0.00 38.93 2.71
4108 4206 3.881220 TCCACGGGAAGGAAATATTGTC 58.119 45.455 0.00 0.00 30.71 3.18
4109 4207 2.949644 CCACGGGAAGGAAATATTGTCC 59.050 50.000 0.00 8.01 35.17 4.02
4110 4208 3.616219 CACGGGAAGGAAATATTGTCCA 58.384 45.455 14.95 0.00 37.65 4.02
4111 4209 4.013728 CACGGGAAGGAAATATTGTCCAA 58.986 43.478 14.95 0.00 37.65 3.53
4112 4210 4.461081 CACGGGAAGGAAATATTGTCCAAA 59.539 41.667 14.95 0.00 37.65 3.28
4113 4211 4.461431 ACGGGAAGGAAATATTGTCCAAAC 59.539 41.667 14.95 8.24 37.65 2.93
4114 4212 4.461081 CGGGAAGGAAATATTGTCCAAACA 59.539 41.667 14.95 0.00 37.65 2.83
4126 4224 5.620738 TTGTCCAAACAAAAATCCATCCA 57.379 34.783 0.00 0.00 42.34 3.41
4127 4225 5.620738 TGTCCAAACAAAAATCCATCCAA 57.379 34.783 0.00 0.00 30.70 3.53
4128 4226 5.994250 TGTCCAAACAAAAATCCATCCAAA 58.006 33.333 0.00 0.00 30.70 3.28
4129 4227 5.819901 TGTCCAAACAAAAATCCATCCAAAC 59.180 36.000 0.00 0.00 30.70 2.93
4130 4228 5.819901 GTCCAAACAAAAATCCATCCAAACA 59.180 36.000 0.00 0.00 0.00 2.83
4131 4229 6.018016 GTCCAAACAAAAATCCATCCAAACAG 60.018 38.462 0.00 0.00 0.00 3.16
4132 4230 5.821995 CCAAACAAAAATCCATCCAAACAGT 59.178 36.000 0.00 0.00 0.00 3.55
4133 4231 6.318396 CCAAACAAAAATCCATCCAAACAGTT 59.682 34.615 0.00 0.00 0.00 3.16
4134 4232 7.148103 CCAAACAAAAATCCATCCAAACAGTTT 60.148 33.333 0.00 0.00 0.00 2.66
4135 4233 7.936496 AACAAAAATCCATCCAAACAGTTTT 57.064 28.000 0.00 0.00 0.00 2.43
4136 4234 7.936496 ACAAAAATCCATCCAAACAGTTTTT 57.064 28.000 0.00 0.00 0.00 1.94
4166 4264 7.728847 ACATAGAATTTTTGTCCTTTTTGCC 57.271 32.000 0.00 0.00 0.00 4.52
4167 4265 7.278875 ACATAGAATTTTTGTCCTTTTTGCCA 58.721 30.769 0.00 0.00 0.00 4.92
4168 4266 7.938490 ACATAGAATTTTTGTCCTTTTTGCCAT 59.062 29.630 0.00 0.00 0.00 4.40
4169 4267 6.622833 AGAATTTTTGTCCTTTTTGCCATG 57.377 33.333 0.00 0.00 0.00 3.66
4170 4268 6.355747 AGAATTTTTGTCCTTTTTGCCATGA 58.644 32.000 0.00 0.00 0.00 3.07
4171 4269 6.827762 AGAATTTTTGTCCTTTTTGCCATGAA 59.172 30.769 0.00 0.00 0.00 2.57
4172 4270 7.503230 AGAATTTTTGTCCTTTTTGCCATGAAT 59.497 29.630 0.00 0.00 0.00 2.57
4173 4271 8.688747 AATTTTTGTCCTTTTTGCCATGAATA 57.311 26.923 0.00 0.00 0.00 1.75
4174 4272 7.489574 TTTTTGTCCTTTTTGCCATGAATAC 57.510 32.000 0.00 0.00 0.00 1.89
4175 4273 5.798125 TTGTCCTTTTTGCCATGAATACA 57.202 34.783 0.00 0.00 0.00 2.29
4176 4274 5.999205 TGTCCTTTTTGCCATGAATACAT 57.001 34.783 0.00 0.00 37.19 2.29
4177 4275 6.357579 TGTCCTTTTTGCCATGAATACATT 57.642 33.333 0.00 0.00 34.15 2.71
4178 4276 6.767456 TGTCCTTTTTGCCATGAATACATTT 58.233 32.000 0.00 0.00 34.15 2.32
4179 4277 6.873076 TGTCCTTTTTGCCATGAATACATTTC 59.127 34.615 0.00 0.00 34.15 2.17
4180 4278 7.099120 GTCCTTTTTGCCATGAATACATTTCT 58.901 34.615 0.00 0.00 34.15 2.52
4181 4279 7.603784 GTCCTTTTTGCCATGAATACATTTCTT 59.396 33.333 0.00 0.00 34.15 2.52
4182 4280 7.603404 TCCTTTTTGCCATGAATACATTTCTTG 59.397 33.333 0.00 0.00 34.15 3.02
4183 4281 7.148373 CCTTTTTGCCATGAATACATTTCTTGG 60.148 37.037 13.19 13.19 42.98 3.61
4184 4282 5.999205 TTGCCATGAATACATTTCTTGGT 57.001 34.783 16.80 0.00 42.44 3.67
4185 4283 7.473735 TTTGCCATGAATACATTTCTTGGTA 57.526 32.000 16.80 12.11 42.44 3.25
4186 4284 7.658525 TTGCCATGAATACATTTCTTGGTAT 57.341 32.000 16.80 0.00 42.44 2.73
4187 4285 7.658525 TGCCATGAATACATTTCTTGGTATT 57.341 32.000 16.80 0.00 42.44 1.89
4188 4286 8.076910 TGCCATGAATACATTTCTTGGTATTT 57.923 30.769 16.80 0.00 42.44 1.40
4189 4287 8.538701 TGCCATGAATACATTTCTTGGTATTTT 58.461 29.630 16.80 0.00 42.44 1.82
4190 4288 9.382275 GCCATGAATACATTTCTTGGTATTTTT 57.618 29.630 16.80 0.00 42.44 1.94
4210 4308 6.416631 TTTTTCATGAAATGTCACATGGGA 57.583 33.333 21.10 0.00 46.80 4.37
4211 4309 5.648178 TTTCATGAAATGTCACATGGGAG 57.352 39.130 16.91 0.00 46.80 4.30
4212 4310 4.305539 TCATGAAATGTCACATGGGAGT 57.694 40.909 0.00 0.00 46.80 3.85
4213 4311 5.434182 TCATGAAATGTCACATGGGAGTA 57.566 39.130 0.00 0.00 46.80 2.59
4214 4312 5.430886 TCATGAAATGTCACATGGGAGTAG 58.569 41.667 0.00 0.00 46.80 2.57
4215 4313 5.189539 TCATGAAATGTCACATGGGAGTAGA 59.810 40.000 0.00 0.00 46.80 2.59
4216 4314 5.698741 TGAAATGTCACATGGGAGTAGAT 57.301 39.130 0.00 0.00 0.00 1.98
4217 4315 6.065976 TGAAATGTCACATGGGAGTAGATT 57.934 37.500 0.00 0.00 0.00 2.40
4218 4316 5.882000 TGAAATGTCACATGGGAGTAGATTG 59.118 40.000 0.00 0.00 0.00 2.67
4219 4317 5.441718 AATGTCACATGGGAGTAGATTGT 57.558 39.130 0.00 0.00 0.00 2.71
4220 4318 4.206477 TGTCACATGGGAGTAGATTGTG 57.794 45.455 0.00 0.00 39.16 3.33
4221 4319 3.837731 TGTCACATGGGAGTAGATTGTGA 59.162 43.478 0.00 0.24 43.07 3.58
4222 4320 4.285775 TGTCACATGGGAGTAGATTGTGAA 59.714 41.667 0.00 0.00 45.73 3.18
4223 4321 5.045651 TGTCACATGGGAGTAGATTGTGAAT 60.046 40.000 0.00 0.00 45.73 2.57
4224 4322 5.525378 GTCACATGGGAGTAGATTGTGAATC 59.475 44.000 0.00 0.00 45.73 2.52
4225 4323 4.818546 CACATGGGAGTAGATTGTGAATCC 59.181 45.833 0.00 0.00 39.98 3.01
4226 4324 4.474651 ACATGGGAGTAGATTGTGAATCCA 59.525 41.667 0.00 0.00 38.71 3.41
4227 4325 4.760530 TGGGAGTAGATTGTGAATCCAG 57.239 45.455 0.00 0.00 38.71 3.86
4228 4326 3.455910 TGGGAGTAGATTGTGAATCCAGG 59.544 47.826 0.00 0.00 38.71 4.45
4229 4327 3.456277 GGGAGTAGATTGTGAATCCAGGT 59.544 47.826 0.00 0.00 38.71 4.00
4230 4328 4.080299 GGGAGTAGATTGTGAATCCAGGTT 60.080 45.833 0.00 0.00 38.71 3.50
4231 4329 5.501156 GGAGTAGATTGTGAATCCAGGTTT 58.499 41.667 0.00 0.00 38.71 3.27
4232 4330 5.355350 GGAGTAGATTGTGAATCCAGGTTTG 59.645 44.000 0.00 0.00 38.71 2.93
4233 4331 6.126863 AGTAGATTGTGAATCCAGGTTTGA 57.873 37.500 0.00 0.00 38.71 2.69
4234 4332 6.725364 AGTAGATTGTGAATCCAGGTTTGAT 58.275 36.000 0.00 0.00 38.71 2.57
4235 4333 7.861629 AGTAGATTGTGAATCCAGGTTTGATA 58.138 34.615 0.00 0.00 38.71 2.15
4236 4334 8.497745 AGTAGATTGTGAATCCAGGTTTGATAT 58.502 33.333 0.00 0.00 38.71 1.63
4237 4335 7.814264 AGATTGTGAATCCAGGTTTGATATC 57.186 36.000 0.00 0.00 38.71 1.63
4238 4336 6.774656 AGATTGTGAATCCAGGTTTGATATCC 59.225 38.462 0.00 0.00 38.71 2.59
4239 4337 4.792068 TGTGAATCCAGGTTTGATATCCC 58.208 43.478 0.00 0.00 0.00 3.85
4240 4338 4.229353 TGTGAATCCAGGTTTGATATCCCA 59.771 41.667 0.00 0.00 0.00 4.37
4241 4339 5.200483 GTGAATCCAGGTTTGATATCCCAA 58.800 41.667 0.00 0.00 0.00 4.12
4242 4340 5.656416 GTGAATCCAGGTTTGATATCCCAAA 59.344 40.000 0.00 0.00 34.03 3.28
4243 4341 6.154363 GTGAATCCAGGTTTGATATCCCAAAA 59.846 38.462 0.00 0.00 37.72 2.44
4244 4342 6.902416 TGAATCCAGGTTTGATATCCCAAAAT 59.098 34.615 0.00 0.00 37.72 1.82
4245 4343 6.983906 ATCCAGGTTTGATATCCCAAAATC 57.016 37.500 0.00 0.00 37.72 2.17
4246 4344 6.091076 TCCAGGTTTGATATCCCAAAATCT 57.909 37.500 0.00 0.00 37.72 2.40
4247 4345 6.502138 TCCAGGTTTGATATCCCAAAATCTT 58.498 36.000 0.00 0.00 37.72 2.40
4248 4346 7.647827 TCCAGGTTTGATATCCCAAAATCTTA 58.352 34.615 0.00 0.00 37.72 2.10
4249 4347 7.779798 TCCAGGTTTGATATCCCAAAATCTTAG 59.220 37.037 0.00 0.00 37.72 2.18
4250 4348 7.779798 CCAGGTTTGATATCCCAAAATCTTAGA 59.220 37.037 0.00 0.00 37.72 2.10
4251 4349 9.359653 CAGGTTTGATATCCCAAAATCTTAGAT 57.640 33.333 0.00 0.00 37.72 1.98
4252 4350 9.942526 AGGTTTGATATCCCAAAATCTTAGATT 57.057 29.630 0.99 0.99 37.72 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 1.283613 TCACCGCTTGATAATGGGGTT 59.716 47.619 2.07 0.00 45.34 4.11
58 60 3.763097 TTTGCTCACCGCTTGATAATG 57.237 42.857 0.00 0.00 40.11 1.90
722 757 1.919918 TTTGGTTTCGCTGCTGTTTG 58.080 45.000 0.00 0.00 0.00 2.93
1992 2031 3.615155 CTCATCCTGTTCCTCCTTTTCC 58.385 50.000 0.00 0.00 0.00 3.13
2612 2685 3.240134 GAGACGGGCCAGTCAAGCA 62.240 63.158 33.24 0.00 43.24 3.91
3359 3452 7.548097 ACAAATAGTCAGAAGTCGATACACAT 58.452 34.615 0.00 0.00 0.00 3.21
3361 3454 9.171701 GATACAAATAGTCAGAAGTCGATACAC 57.828 37.037 0.00 0.00 0.00 2.90
3365 3458 7.028926 ACGATACAAATAGTCAGAAGTCGAT 57.971 36.000 0.00 0.00 0.00 3.59
3367 3460 7.856398 ACATACGATACAAATAGTCAGAAGTCG 59.144 37.037 0.00 0.00 0.00 4.18
3387 3483 8.803201 AATAGTCAGATGTTGATACACATACG 57.197 34.615 0.00 0.00 37.52 3.06
3491 3587 8.642935 TGATAACCAAAACATGAACAATAGGA 57.357 30.769 0.00 0.00 0.00 2.94
3497 3593 7.920151 CAGAAGTTGATAACCAAAACATGAACA 59.080 33.333 0.00 0.00 36.36 3.18
3507 3603 6.109156 TGCTAGACAGAAGTTGATAACCAA 57.891 37.500 0.00 0.00 0.00 3.67
3508 3604 5.738619 TGCTAGACAGAAGTTGATAACCA 57.261 39.130 0.00 0.00 0.00 3.67
3509 3605 6.109359 ACATGCTAGACAGAAGTTGATAACC 58.891 40.000 0.00 0.00 0.00 2.85
3510 3606 7.602517 AACATGCTAGACAGAAGTTGATAAC 57.397 36.000 0.00 0.00 0.00 1.89
3511 3607 8.531982 AGTAACATGCTAGACAGAAGTTGATAA 58.468 33.333 0.00 0.00 0.00 1.75
3512 3608 8.067751 AGTAACATGCTAGACAGAAGTTGATA 57.932 34.615 0.00 0.00 0.00 2.15
3513 3609 6.940739 AGTAACATGCTAGACAGAAGTTGAT 58.059 36.000 0.00 0.00 0.00 2.57
3514 3610 6.346477 AGTAACATGCTAGACAGAAGTTGA 57.654 37.500 0.00 0.00 0.00 3.18
3515 3611 5.287274 CGAGTAACATGCTAGACAGAAGTTG 59.713 44.000 0.00 0.00 0.00 3.16
3516 3612 5.403246 CGAGTAACATGCTAGACAGAAGTT 58.597 41.667 0.00 1.64 0.00 2.66
3517 3613 4.675671 GCGAGTAACATGCTAGACAGAAGT 60.676 45.833 0.00 0.00 0.00 3.01
3518 3614 3.794028 GCGAGTAACATGCTAGACAGAAG 59.206 47.826 0.00 0.00 0.00 2.85
3519 3615 3.444034 AGCGAGTAACATGCTAGACAGAA 59.556 43.478 0.00 0.00 37.15 3.02
3522 3618 3.868757 AAGCGAGTAACATGCTAGACA 57.131 42.857 0.00 0.00 38.17 3.41
3537 3633 5.710099 ACTCCAAAATCTTTGGATAAAGCGA 59.290 36.000 18.64 0.00 46.47 4.93
3538 3634 5.954335 ACTCCAAAATCTTTGGATAAAGCG 58.046 37.500 18.64 10.17 46.47 4.68
3544 3640 4.410099 TGCAGACTCCAAAATCTTTGGAT 58.590 39.130 18.64 10.66 46.47 3.41
3560 3656 0.301687 CACGTGTGACACTTGCAGAC 59.698 55.000 14.42 0.00 31.34 3.51
3616 3712 2.477845 TCCCGGGTAACTAAAGTTGC 57.522 50.000 22.86 4.10 38.90 4.17
3679 3776 7.515998 CGAAACACAAAAACAACTGAAACTTGT 60.516 33.333 0.00 0.00 33.09 3.16
3705 3802 3.643159 AAACTGCCATCCGAGAAAAAC 57.357 42.857 0.00 0.00 0.00 2.43
3711 3808 3.074412 ACAACTAAAACTGCCATCCGAG 58.926 45.455 0.00 0.00 0.00 4.63
3713 3810 5.365403 TTTACAACTAAAACTGCCATCCG 57.635 39.130 0.00 0.00 0.00 4.18
3722 3820 6.981559 TGCCCTGACATTTTTACAACTAAAAC 59.018 34.615 0.00 0.00 32.59 2.43
3749 3847 0.531090 AAGTGTGGCGCGAAGTAACA 60.531 50.000 12.10 2.63 0.00 2.41
3813 3911 3.008375 TGCAGCTCAAGTTCTGAATACCT 59.992 43.478 0.00 0.00 32.17 3.08
3815 3913 4.214119 TGTTGCAGCTCAAGTTCTGAATAC 59.786 41.667 1.17 0.00 34.91 1.89
3817 3915 3.216800 TGTTGCAGCTCAAGTTCTGAAT 58.783 40.909 1.17 0.00 34.91 2.57
3818 3916 2.642427 TGTTGCAGCTCAAGTTCTGAA 58.358 42.857 1.17 0.00 34.91 3.02
3866 3964 5.801531 TTTCTAGTGGCTGAGAGTTACAA 57.198 39.130 0.00 0.00 0.00 2.41
3875 3973 5.036117 ACAAAGACTTTTCTAGTGGCTGA 57.964 39.130 0.00 0.00 37.17 4.26
3890 3988 5.751243 TTTTCTAGTGGCAGAACAAAGAC 57.249 39.130 0.00 0.00 34.31 3.01
3891 3989 6.239008 CCATTTTTCTAGTGGCAGAACAAAGA 60.239 38.462 0.00 0.00 34.31 2.52
3892 3990 5.922544 CCATTTTTCTAGTGGCAGAACAAAG 59.077 40.000 0.00 0.00 34.31 2.77
3893 3991 5.362430 ACCATTTTTCTAGTGGCAGAACAAA 59.638 36.000 0.00 0.00 34.31 2.83
3894 3992 4.892934 ACCATTTTTCTAGTGGCAGAACAA 59.107 37.500 0.00 0.00 34.31 2.83
3895 3993 4.469657 ACCATTTTTCTAGTGGCAGAACA 58.530 39.130 0.00 0.00 34.31 3.18
3896 3994 5.009610 TGAACCATTTTTCTAGTGGCAGAAC 59.990 40.000 0.00 0.00 34.31 3.01
3897 3995 5.136828 TGAACCATTTTTCTAGTGGCAGAA 58.863 37.500 0.00 0.00 36.47 3.02
3898 3996 4.724399 TGAACCATTTTTCTAGTGGCAGA 58.276 39.130 0.00 0.00 36.47 4.26
3899 3997 5.404946 CATGAACCATTTTTCTAGTGGCAG 58.595 41.667 0.00 0.00 36.47 4.85
3900 3998 4.321899 GCATGAACCATTTTTCTAGTGGCA 60.322 41.667 0.00 0.00 36.47 4.92
3901 3999 4.176271 GCATGAACCATTTTTCTAGTGGC 58.824 43.478 0.00 0.00 36.47 5.01
3902 4000 4.381932 GGGCATGAACCATTTTTCTAGTGG 60.382 45.833 0.00 0.00 38.96 4.00
3903 4001 4.463891 AGGGCATGAACCATTTTTCTAGTG 59.536 41.667 0.00 0.00 0.00 2.74
3904 4002 4.463891 CAGGGCATGAACCATTTTTCTAGT 59.536 41.667 0.00 0.00 0.00 2.57
3905 4003 4.706476 TCAGGGCATGAACCATTTTTCTAG 59.294 41.667 0.00 0.00 34.02 2.43
3906 4004 4.671831 TCAGGGCATGAACCATTTTTCTA 58.328 39.130 0.00 0.00 34.02 2.10
3907 4005 3.509442 TCAGGGCATGAACCATTTTTCT 58.491 40.909 0.00 0.00 34.02 2.52
3908 4006 3.959535 TCAGGGCATGAACCATTTTTC 57.040 42.857 0.00 0.00 34.02 2.29
3917 4015 5.076182 TCTTGTGTATTTTCAGGGCATGAA 58.924 37.500 10.99 10.99 46.31 2.57
3918 4016 4.661222 TCTTGTGTATTTTCAGGGCATGA 58.339 39.130 0.00 0.00 35.62 3.07
3919 4017 4.676196 GCTCTTGTGTATTTTCAGGGCATG 60.676 45.833 0.00 0.00 0.00 4.06
3920 4018 3.445096 GCTCTTGTGTATTTTCAGGGCAT 59.555 43.478 0.00 0.00 0.00 4.40
3921 4019 2.819608 GCTCTTGTGTATTTTCAGGGCA 59.180 45.455 0.00 0.00 0.00 5.36
3922 4020 3.084786 AGCTCTTGTGTATTTTCAGGGC 58.915 45.455 0.00 0.00 0.00 5.19
3923 4021 4.583871 AGAGCTCTTGTGTATTTTCAGGG 58.416 43.478 11.45 0.00 0.00 4.45
3924 4022 5.936054 CAAGAGCTCTTGTGTATTTTCAGG 58.064 41.667 37.56 15.69 46.11 3.86
3948 4046 1.549170 CGTATAGGGGTATGGAGCACC 59.451 57.143 0.00 0.00 35.15 5.01
3949 4047 2.522185 TCGTATAGGGGTATGGAGCAC 58.478 52.381 0.00 0.00 0.00 4.40
3950 4048 2.984435 TCGTATAGGGGTATGGAGCA 57.016 50.000 0.00 0.00 0.00 4.26
3951 4049 6.481434 AATATTCGTATAGGGGTATGGAGC 57.519 41.667 0.00 0.00 0.00 4.70
3952 4050 9.813446 GTTTAATATTCGTATAGGGGTATGGAG 57.187 37.037 0.00 0.00 0.00 3.86
3953 4051 8.469200 CGTTTAATATTCGTATAGGGGTATGGA 58.531 37.037 0.00 0.00 0.00 3.41
3954 4052 8.253113 ACGTTTAATATTCGTATAGGGGTATGG 58.747 37.037 0.00 0.00 36.05 2.74
3966 4064 8.664798 GGGGTACTTTTTACGTTTAATATTCGT 58.335 33.333 0.00 6.04 40.78 3.85
3967 4065 8.122330 GGGGGTACTTTTTACGTTTAATATTCG 58.878 37.037 0.00 0.00 0.00 3.34
3968 4066 8.955388 TGGGGGTACTTTTTACGTTTAATATTC 58.045 33.333 0.00 0.00 0.00 1.75
3969 4067 8.876303 TGGGGGTACTTTTTACGTTTAATATT 57.124 30.769 0.00 0.00 0.00 1.28
3970 4068 8.876303 TTGGGGGTACTTTTTACGTTTAATAT 57.124 30.769 0.00 0.00 0.00 1.28
3971 4069 8.697507 TTTGGGGGTACTTTTTACGTTTAATA 57.302 30.769 0.00 0.00 0.00 0.98
3972 4070 7.594351 TTTGGGGGTACTTTTTACGTTTAAT 57.406 32.000 0.00 0.00 0.00 1.40
3973 4071 7.410120 TTTTGGGGGTACTTTTTACGTTTAA 57.590 32.000 0.00 0.00 0.00 1.52
3974 4072 7.410120 TTTTTGGGGGTACTTTTTACGTTTA 57.590 32.000 0.00 0.00 0.00 2.01
3975 4073 5.929058 TTTTGGGGGTACTTTTTACGTTT 57.071 34.783 0.00 0.00 0.00 3.60
3976 4074 5.929058 TTTTTGGGGGTACTTTTTACGTT 57.071 34.783 0.00 0.00 0.00 3.99
3977 4075 6.482898 AATTTTTGGGGGTACTTTTTACGT 57.517 33.333 0.00 0.00 0.00 3.57
3978 4076 9.491675 AAATAATTTTTGGGGGTACTTTTTACG 57.508 29.630 0.00 0.00 0.00 3.18
4007 4105 7.500559 CAGGTTTGACATCCCCAAATTTAAAAA 59.499 33.333 0.00 0.00 36.14 1.94
4008 4106 6.995091 CAGGTTTGACATCCCCAAATTTAAAA 59.005 34.615 0.00 0.00 36.14 1.52
4009 4107 6.465035 CCAGGTTTGACATCCCCAAATTTAAA 60.465 38.462 0.00 0.00 36.14 1.52
4010 4108 5.012561 CCAGGTTTGACATCCCCAAATTTAA 59.987 40.000 0.00 0.00 36.14 1.52
4011 4109 4.530161 CCAGGTTTGACATCCCCAAATTTA 59.470 41.667 0.00 0.00 36.14 1.40
4012 4110 3.327464 CCAGGTTTGACATCCCCAAATTT 59.673 43.478 0.00 0.00 36.14 1.82
4013 4111 2.905736 CCAGGTTTGACATCCCCAAATT 59.094 45.455 0.00 0.00 36.14 1.82
4014 4112 2.539302 CCAGGTTTGACATCCCCAAAT 58.461 47.619 0.00 0.00 36.14 2.32
4015 4113 1.482177 CCCAGGTTTGACATCCCCAAA 60.482 52.381 0.00 0.00 0.00 3.28
4016 4114 0.114168 CCCAGGTTTGACATCCCCAA 59.886 55.000 0.00 0.00 0.00 4.12
4017 4115 1.773635 CCCAGGTTTGACATCCCCA 59.226 57.895 0.00 0.00 0.00 4.96
4018 4116 1.682344 GCCCAGGTTTGACATCCCC 60.682 63.158 0.00 0.00 0.00 4.81
4019 4117 0.681243 GAGCCCAGGTTTGACATCCC 60.681 60.000 0.00 0.00 0.00 3.85
4020 4118 0.329596 AGAGCCCAGGTTTGACATCC 59.670 55.000 0.00 0.00 0.00 3.51
4021 4119 1.743996 GAGAGCCCAGGTTTGACATC 58.256 55.000 0.00 0.00 0.00 3.06
4022 4120 0.036010 CGAGAGCCCAGGTTTGACAT 60.036 55.000 0.00 0.00 0.00 3.06
4023 4121 1.118965 TCGAGAGCCCAGGTTTGACA 61.119 55.000 0.00 0.00 0.00 3.58
4024 4122 0.250513 ATCGAGAGCCCAGGTTTGAC 59.749 55.000 0.00 0.00 0.00 3.18
4025 4123 0.537188 GATCGAGAGCCCAGGTTTGA 59.463 55.000 0.00 0.00 0.00 2.69
4026 4124 0.539051 AGATCGAGAGCCCAGGTTTG 59.461 55.000 0.00 0.00 0.00 2.93
4027 4125 1.757699 GTAGATCGAGAGCCCAGGTTT 59.242 52.381 0.00 0.00 0.00 3.27
4028 4126 1.063567 AGTAGATCGAGAGCCCAGGTT 60.064 52.381 0.00 0.00 0.00 3.50
4029 4127 0.553819 AGTAGATCGAGAGCCCAGGT 59.446 55.000 0.00 0.00 0.00 4.00
4030 4128 1.243902 GAGTAGATCGAGAGCCCAGG 58.756 60.000 0.00 0.00 0.00 4.45
4031 4129 1.243902 GGAGTAGATCGAGAGCCCAG 58.756 60.000 0.00 0.00 0.00 4.45
4032 4130 0.178987 GGGAGTAGATCGAGAGCCCA 60.179 60.000 0.00 0.00 34.25 5.36
4033 4131 1.238625 CGGGAGTAGATCGAGAGCCC 61.239 65.000 0.00 0.00 0.00 5.19
4034 4132 0.535553 ACGGGAGTAGATCGAGAGCC 60.536 60.000 0.00 0.00 44.60 4.70
4035 4133 0.589223 CACGGGAGTAGATCGAGAGC 59.411 60.000 0.00 0.00 44.67 4.09
4036 4134 0.589223 GCACGGGAGTAGATCGAGAG 59.411 60.000 0.00 0.00 44.67 3.20
4037 4135 1.158484 CGCACGGGAGTAGATCGAGA 61.158 60.000 0.00 0.00 44.67 4.04
4038 4136 1.158484 TCGCACGGGAGTAGATCGAG 61.158 60.000 0.00 0.00 44.67 4.04
4039 4137 0.745486 TTCGCACGGGAGTAGATCGA 60.745 55.000 0.00 0.00 44.67 3.59
4040 4138 0.099968 TTTCGCACGGGAGTAGATCG 59.900 55.000 0.00 0.00 44.67 3.69
4041 4139 2.510768 ATTTCGCACGGGAGTAGATC 57.489 50.000 0.00 0.00 44.67 2.75
4042 4140 2.981859 AATTTCGCACGGGAGTAGAT 57.018 45.000 0.00 0.00 44.67 1.98
4043 4141 2.613691 GAAATTTCGCACGGGAGTAGA 58.386 47.619 1.68 0.00 44.67 2.59
4044 4142 1.323534 CGAAATTTCGCACGGGAGTAG 59.676 52.381 26.01 0.00 44.26 2.57
4045 4143 1.352114 CGAAATTTCGCACGGGAGTA 58.648 50.000 26.01 0.00 44.26 2.59
4046 4144 2.159181 CGAAATTTCGCACGGGAGT 58.841 52.632 26.01 0.00 44.26 3.85
4056 4154 5.051374 TCGTGGCATTTTTGAACGAAATTTC 60.051 36.000 8.20 8.20 40.03 2.17
4057 4155 4.806247 TCGTGGCATTTTTGAACGAAATTT 59.194 33.333 0.00 0.00 40.03 1.82
4058 4156 4.363999 TCGTGGCATTTTTGAACGAAATT 58.636 34.783 0.00 0.00 40.03 1.82
4059 4157 3.971150 TCGTGGCATTTTTGAACGAAAT 58.029 36.364 0.00 0.00 40.03 2.17
4060 4158 3.422417 TCGTGGCATTTTTGAACGAAA 57.578 38.095 0.00 0.00 40.03 3.46
4062 4160 3.109619 GTTTCGTGGCATTTTTGAACGA 58.890 40.909 0.00 0.00 41.12 3.85
4063 4161 2.854777 TGTTTCGTGGCATTTTTGAACG 59.145 40.909 0.00 0.00 35.64 3.95
4064 4162 6.183360 GGATATGTTTCGTGGCATTTTTGAAC 60.183 38.462 0.00 0.00 0.00 3.18
4065 4163 5.866633 GGATATGTTTCGTGGCATTTTTGAA 59.133 36.000 0.00 0.00 0.00 2.69
4066 4164 5.047731 TGGATATGTTTCGTGGCATTTTTGA 60.048 36.000 0.00 0.00 0.00 2.69
4067 4165 5.062058 GTGGATATGTTTCGTGGCATTTTTG 59.938 40.000 0.00 0.00 0.00 2.44
4068 4166 5.167845 GTGGATATGTTTCGTGGCATTTTT 58.832 37.500 0.00 0.00 0.00 1.94
4069 4167 4.674101 CGTGGATATGTTTCGTGGCATTTT 60.674 41.667 0.00 0.00 0.00 1.82
4070 4168 3.181501 CGTGGATATGTTTCGTGGCATTT 60.182 43.478 0.00 0.00 0.00 2.32
4071 4169 2.354510 CGTGGATATGTTTCGTGGCATT 59.645 45.455 0.00 0.00 0.00 3.56
4072 4170 1.939934 CGTGGATATGTTTCGTGGCAT 59.060 47.619 0.00 0.00 0.00 4.40
4073 4171 1.364721 CGTGGATATGTTTCGTGGCA 58.635 50.000 0.00 0.00 0.00 4.92
4074 4172 0.655733 CCGTGGATATGTTTCGTGGC 59.344 55.000 0.00 0.00 0.00 5.01
4075 4173 1.134640 TCCCGTGGATATGTTTCGTGG 60.135 52.381 0.00 0.00 0.00 4.94
4076 4174 2.303163 TCCCGTGGATATGTTTCGTG 57.697 50.000 0.00 0.00 0.00 4.35
4077 4175 2.419574 CCTTCCCGTGGATATGTTTCGT 60.420 50.000 0.00 0.00 0.00 3.85
4078 4176 2.159014 TCCTTCCCGTGGATATGTTTCG 60.159 50.000 0.00 0.00 0.00 3.46
4079 4177 3.553828 TCCTTCCCGTGGATATGTTTC 57.446 47.619 0.00 0.00 0.00 2.78
4080 4178 4.310022 TTTCCTTCCCGTGGATATGTTT 57.690 40.909 0.00 0.00 33.09 2.83
4081 4179 4.519906 ATTTCCTTCCCGTGGATATGTT 57.480 40.909 0.00 0.00 33.09 2.71
4082 4180 5.843019 ATATTTCCTTCCCGTGGATATGT 57.157 39.130 0.00 0.00 33.09 2.29
4083 4181 6.003950 ACAATATTTCCTTCCCGTGGATATG 58.996 40.000 0.00 0.00 33.09 1.78
4084 4182 6.200878 ACAATATTTCCTTCCCGTGGATAT 57.799 37.500 0.00 0.00 33.09 1.63
4085 4183 5.455612 GGACAATATTTCCTTCCCGTGGATA 60.456 44.000 8.56 0.00 33.09 2.59
4086 4184 4.461198 GACAATATTTCCTTCCCGTGGAT 58.539 43.478 0.00 0.00 33.09 3.41
4087 4185 3.371166 GGACAATATTTCCTTCCCGTGGA 60.371 47.826 8.56 0.00 0.00 4.02
4088 4186 2.949644 GGACAATATTTCCTTCCCGTGG 59.050 50.000 8.56 0.00 0.00 4.94
4089 4187 3.616219 TGGACAATATTTCCTTCCCGTG 58.384 45.455 14.07 0.00 33.84 4.94
4090 4188 4.310022 TTGGACAATATTTCCTTCCCGT 57.690 40.909 14.07 0.00 33.84 5.28
4091 4189 4.461081 TGTTTGGACAATATTTCCTTCCCG 59.539 41.667 14.07 0.00 33.84 5.14
4092 4190 5.993748 TGTTTGGACAATATTTCCTTCCC 57.006 39.130 14.07 0.00 33.84 3.97
4093 4191 8.669946 TTTTTGTTTGGACAATATTTCCTTCC 57.330 30.769 14.07 6.69 44.71 3.46
4095 4193 9.283768 GGATTTTTGTTTGGACAATATTTCCTT 57.716 29.630 14.07 0.00 44.71 3.36
4096 4194 8.435982 TGGATTTTTGTTTGGACAATATTTCCT 58.564 29.630 14.07 0.00 44.71 3.36
4097 4195 8.614469 TGGATTTTTGTTTGGACAATATTTCC 57.386 30.769 8.79 8.79 44.71 3.13
4099 4197 9.230122 GGATGGATTTTTGTTTGGACAATATTT 57.770 29.630 0.00 0.00 44.71 1.40
4100 4198 8.381636 TGGATGGATTTTTGTTTGGACAATATT 58.618 29.630 0.00 0.00 44.71 1.28
4101 4199 7.915930 TGGATGGATTTTTGTTTGGACAATAT 58.084 30.769 0.00 0.00 44.71 1.28
4102 4200 7.308450 TGGATGGATTTTTGTTTGGACAATA 57.692 32.000 0.00 0.00 44.71 1.90
4103 4201 6.185114 TGGATGGATTTTTGTTTGGACAAT 57.815 33.333 0.00 0.00 44.71 2.71
4104 4202 5.620738 TGGATGGATTTTTGTTTGGACAA 57.379 34.783 0.00 0.00 43.73 3.18
4105 4203 5.620738 TTGGATGGATTTTTGTTTGGACA 57.379 34.783 0.00 0.00 0.00 4.02
4106 4204 5.819901 TGTTTGGATGGATTTTTGTTTGGAC 59.180 36.000 0.00 0.00 0.00 4.02
4107 4205 5.994250 TGTTTGGATGGATTTTTGTTTGGA 58.006 33.333 0.00 0.00 0.00 3.53
4108 4206 5.821995 ACTGTTTGGATGGATTTTTGTTTGG 59.178 36.000 0.00 0.00 0.00 3.28
4109 4207 6.923928 ACTGTTTGGATGGATTTTTGTTTG 57.076 33.333 0.00 0.00 0.00 2.93
4110 4208 7.936496 AAACTGTTTGGATGGATTTTTGTTT 57.064 28.000 4.73 0.00 0.00 2.83
4111 4209 7.936496 AAAACTGTTTGGATGGATTTTTGTT 57.064 28.000 6.53 0.00 0.00 2.83
4112 4210 7.936496 AAAAACTGTTTGGATGGATTTTTGT 57.064 28.000 6.53 0.00 0.00 2.83
4140 4238 9.435688 GGCAAAAAGGACAAAAATTCTATGTAT 57.564 29.630 0.00 0.00 0.00 2.29
4141 4239 8.424918 TGGCAAAAAGGACAAAAATTCTATGTA 58.575 29.630 0.00 0.00 0.00 2.29
4142 4240 7.278875 TGGCAAAAAGGACAAAAATTCTATGT 58.721 30.769 0.00 0.00 0.00 2.29
4143 4241 7.727331 TGGCAAAAAGGACAAAAATTCTATG 57.273 32.000 0.00 0.00 0.00 2.23
4144 4242 8.156165 TCATGGCAAAAAGGACAAAAATTCTAT 58.844 29.630 0.00 0.00 0.00 1.98
4145 4243 7.504403 TCATGGCAAAAAGGACAAAAATTCTA 58.496 30.769 0.00 0.00 0.00 2.10
4146 4244 6.355747 TCATGGCAAAAAGGACAAAAATTCT 58.644 32.000 0.00 0.00 0.00 2.40
4147 4245 6.616774 TCATGGCAAAAAGGACAAAAATTC 57.383 33.333 0.00 0.00 0.00 2.17
4148 4246 7.585579 ATTCATGGCAAAAAGGACAAAAATT 57.414 28.000 0.00 0.00 0.00 1.82
4149 4247 7.718753 TGTATTCATGGCAAAAAGGACAAAAAT 59.281 29.630 0.00 0.00 0.00 1.82
4150 4248 7.050377 TGTATTCATGGCAAAAAGGACAAAAA 58.950 30.769 0.00 0.00 0.00 1.94
4151 4249 6.586344 TGTATTCATGGCAAAAAGGACAAAA 58.414 32.000 0.00 0.00 0.00 2.44
4152 4250 6.166984 TGTATTCATGGCAAAAAGGACAAA 57.833 33.333 0.00 0.00 0.00 2.83
4153 4251 5.798125 TGTATTCATGGCAAAAAGGACAA 57.202 34.783 0.00 0.00 0.00 3.18
4154 4252 5.999205 ATGTATTCATGGCAAAAAGGACA 57.001 34.783 0.00 0.00 32.51 4.02
4155 4253 7.099120 AGAAATGTATTCATGGCAAAAAGGAC 58.901 34.615 0.00 0.00 34.19 3.85
4156 4254 7.243604 AGAAATGTATTCATGGCAAAAAGGA 57.756 32.000 0.00 0.00 34.19 3.36
4157 4255 7.148373 CCAAGAAATGTATTCATGGCAAAAAGG 60.148 37.037 0.00 0.00 31.68 3.11
4158 4256 7.388500 ACCAAGAAATGTATTCATGGCAAAAAG 59.612 33.333 11.23 0.00 40.00 2.27
4159 4257 7.222872 ACCAAGAAATGTATTCATGGCAAAAA 58.777 30.769 11.23 0.00 40.00 1.94
4160 4258 6.767456 ACCAAGAAATGTATTCATGGCAAAA 58.233 32.000 11.23 0.00 40.00 2.44
4161 4259 6.357579 ACCAAGAAATGTATTCATGGCAAA 57.642 33.333 11.23 0.00 40.00 3.68
4162 4260 5.999205 ACCAAGAAATGTATTCATGGCAA 57.001 34.783 11.23 0.00 40.00 4.52
4163 4261 7.658525 AATACCAAGAAATGTATTCATGGCA 57.341 32.000 11.23 0.00 40.00 4.92
4164 4262 8.947055 AAAATACCAAGAAATGTATTCATGGC 57.053 30.769 11.23 0.00 40.00 4.40
4187 4285 6.041865 ACTCCCATGTGACATTTCATGAAAAA 59.958 34.615 23.91 3.45 42.52 1.94
4188 4286 5.539574 ACTCCCATGTGACATTTCATGAAAA 59.460 36.000 23.91 7.66 42.52 2.29
4189 4287 5.078949 ACTCCCATGTGACATTTCATGAAA 58.921 37.500 22.52 22.52 42.52 2.69
4190 4288 4.665451 ACTCCCATGTGACATTTCATGAA 58.335 39.130 3.38 3.38 42.52 2.57
4191 4289 4.305539 ACTCCCATGTGACATTTCATGA 57.694 40.909 0.00 0.00 42.52 3.07
4192 4290 5.430886 TCTACTCCCATGTGACATTTCATG 58.569 41.667 0.00 0.00 40.46 3.07
4193 4291 5.698741 TCTACTCCCATGTGACATTTCAT 57.301 39.130 0.00 0.00 33.11 2.57
4194 4292 5.698741 ATCTACTCCCATGTGACATTTCA 57.301 39.130 0.00 0.00 0.00 2.69
4195 4293 5.882557 ACAATCTACTCCCATGTGACATTTC 59.117 40.000 0.00 0.00 0.00 2.17
4196 4294 5.649395 CACAATCTACTCCCATGTGACATTT 59.351 40.000 0.00 0.00 43.01 2.32
4197 4295 5.045651 TCACAATCTACTCCCATGTGACATT 60.046 40.000 0.00 0.00 43.79 2.71
4198 4296 4.471025 TCACAATCTACTCCCATGTGACAT 59.529 41.667 3.01 0.00 43.79 3.06
4199 4297 3.837731 TCACAATCTACTCCCATGTGACA 59.162 43.478 3.01 0.00 43.79 3.58
4200 4298 4.471904 TCACAATCTACTCCCATGTGAC 57.528 45.455 3.01 0.00 43.79 3.67
4201 4299 5.396772 GGATTCACAATCTACTCCCATGTGA 60.397 44.000 3.01 3.01 46.12 3.58
4202 4300 4.818546 GGATTCACAATCTACTCCCATGTG 59.181 45.833 0.00 0.00 42.01 3.21
4203 4301 4.474651 TGGATTCACAATCTACTCCCATGT 59.525 41.667 0.00 0.00 38.01 3.21
4204 4302 5.039920 TGGATTCACAATCTACTCCCATG 57.960 43.478 0.00 0.00 38.01 3.66
4205 4303 4.103785 CCTGGATTCACAATCTACTCCCAT 59.896 45.833 0.00 0.00 38.01 4.00
4206 4304 3.455910 CCTGGATTCACAATCTACTCCCA 59.544 47.826 0.00 0.00 38.01 4.37
4207 4305 3.456277 ACCTGGATTCACAATCTACTCCC 59.544 47.826 0.00 0.00 38.01 4.30
4208 4306 4.762289 ACCTGGATTCACAATCTACTCC 57.238 45.455 0.00 0.00 38.01 3.85
4209 4307 6.173339 TCAAACCTGGATTCACAATCTACTC 58.827 40.000 0.00 0.00 38.01 2.59
4210 4308 6.126863 TCAAACCTGGATTCACAATCTACT 57.873 37.500 0.00 0.00 38.01 2.57
4211 4309 8.682936 ATATCAAACCTGGATTCACAATCTAC 57.317 34.615 0.00 0.00 38.01 2.59
4212 4310 7.939039 GGATATCAAACCTGGATTCACAATCTA 59.061 37.037 0.00 0.00 38.01 1.98
4213 4311 6.774656 GGATATCAAACCTGGATTCACAATCT 59.225 38.462 0.00 0.00 38.01 2.40
4214 4312 6.015940 GGGATATCAAACCTGGATTCACAATC 60.016 42.308 0.00 0.00 37.17 2.67
4215 4313 5.835280 GGGATATCAAACCTGGATTCACAAT 59.165 40.000 0.00 0.00 0.00 2.71
4216 4314 5.200483 GGGATATCAAACCTGGATTCACAA 58.800 41.667 0.00 0.00 0.00 3.33
4217 4315 4.229353 TGGGATATCAAACCTGGATTCACA 59.771 41.667 0.00 0.00 0.00 3.58
4218 4316 4.792068 TGGGATATCAAACCTGGATTCAC 58.208 43.478 0.00 0.00 0.00 3.18
4219 4317 5.464588 TTGGGATATCAAACCTGGATTCA 57.535 39.130 0.00 0.00 0.00 2.57
4220 4318 6.790232 TTTTGGGATATCAAACCTGGATTC 57.210 37.500 0.00 0.00 36.49 2.52
4221 4319 7.134842 AGATTTTGGGATATCAAACCTGGATT 58.865 34.615 0.00 0.00 36.49 3.01
4222 4320 6.686544 AGATTTTGGGATATCAAACCTGGAT 58.313 36.000 0.00 0.00 36.49 3.41
4223 4321 6.091076 AGATTTTGGGATATCAAACCTGGA 57.909 37.500 0.00 0.00 36.49 3.86
4224 4322 6.796785 AAGATTTTGGGATATCAAACCTGG 57.203 37.500 4.83 0.00 36.49 4.45
4225 4323 8.752005 TCTAAGATTTTGGGATATCAAACCTG 57.248 34.615 4.83 0.00 36.49 4.00
4226 4324 9.942526 AATCTAAGATTTTGGGATATCAAACCT 57.057 29.630 4.83 0.00 36.49 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.