Multiple sequence alignment - TraesCS2B01G216900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G216900 chr2B 100.000 4257 0 0 1 4257 203906248 203901992 0.000000e+00 7862.0
1 TraesCS2B01G216900 chr2B 97.753 3071 47 12 826 3883 204918692 204915631 0.000000e+00 5269.0
2 TraesCS2B01G216900 chr2B 77.589 1062 198 29 2237 3284 545152922 545153957 1.310000e-169 606.0
3 TraesCS2B01G216900 chr2B 75.935 1176 211 50 2207 3355 186403463 186404593 4.840000e-149 538.0
4 TraesCS2B01G216900 chr2B 92.031 389 19 11 453 834 204920113 204919730 1.740000e-148 536.0
5 TraesCS2B01G216900 chr2B 76.030 1068 192 42 2207 3255 185762098 185761076 2.960000e-136 496.0
6 TraesCS2B01G216900 chr2B 95.489 266 12 0 210 475 204920316 204920051 3.930000e-115 425.0
7 TraesCS2B01G216900 chr2B 89.520 229 24 0 45 273 204921265 204921037 1.500000e-74 291.0
8 TraesCS2B01G216900 chr2B 89.520 229 23 1 45 273 204920515 204920288 5.390000e-74 289.0
9 TraesCS2B01G216900 chr2B 89.083 229 25 0 45 273 204922015 204921787 6.970000e-73 285.0
10 TraesCS2B01G216900 chr2B 86.290 248 22 11 3545 3788 667259191 667259430 4.220000e-65 259.0
11 TraesCS2B01G216900 chr2B 90.960 177 16 0 200 376 204921075 204920899 5.500000e-59 239.0
12 TraesCS2B01G216900 chr2B 90.960 177 16 0 200 376 204921825 204921649 5.500000e-59 239.0
13 TraesCS2B01G216900 chr2B 79.186 221 37 6 2245 2459 799289779 799289996 1.230000e-30 145.0
14 TraesCS2B01G216900 chr2B 97.059 68 2 0 767 834 204919604 204919537 9.670000e-22 115.0
15 TraesCS2B01G216900 chr2B 75.926 216 43 7 2250 2459 751812553 751812765 7.530000e-18 102.0
16 TraesCS2B01G216900 chr2B 75.439 228 42 12 2240 2459 751839984 751840205 9.740000e-17 99.0
17 TraesCS2B01G216900 chr2B 97.561 41 1 0 3015 3055 617527227 617527187 2.120000e-08 71.3
18 TraesCS2B01G216900 chr6D 81.356 236 33 9 3550 3781 66250185 66250413 9.400000e-42 182.0
19 TraesCS2B01G216900 chr6B 82.326 215 32 5 3568 3781 6629647 6629856 9.400000e-42 182.0
20 TraesCS2B01G216900 chr5A 85.119 168 22 3 3565 3731 462829620 462829785 7.320000e-38 169.0
21 TraesCS2B01G216900 chr2A 79.741 232 38 6 3549 3779 566454641 566454418 4.410000e-35 159.0
22 TraesCS2B01G216900 chr2A 74.733 281 63 6 2245 2521 762497571 762497847 7.480000e-23 119.0
23 TraesCS2B01G216900 chr2A 74.419 215 44 9 2252 2459 746849162 746849372 9.810000e-12 82.4
24 TraesCS2B01G216900 chr2A 91.489 47 4 0 2598 2644 649004939 649004893 9.880000e-07 65.8
25 TraesCS2B01G216900 chr3D 80.097 206 33 6 3567 3770 495808689 495808888 3.430000e-31 147.0
26 TraesCS2B01G216900 chr3D 77.570 214 43 5 3567 3779 539240359 539240150 1.610000e-24 124.0
27 TraesCS2B01G216900 chrUn 78.829 222 38 6 2245 2460 183018640 183018422 1.600000e-29 141.0
28 TraesCS2B01G216900 chrUn 80.000 110 19 3 2577 2685 31593528 31593635 1.270000e-10 78.7
29 TraesCS2B01G216900 chrUn 78.947 114 22 1 9 122 21552019 21551908 4.560000e-10 76.8
30 TraesCS2B01G216900 chr3B 82.738 168 20 5 3627 3793 5697450 5697291 1.600000e-29 141.0
31 TraesCS2B01G216900 chr7D 89.011 91 4 2 594 678 10055376 10055466 1.620000e-19 108.0
32 TraesCS2B01G216900 chr7D 90.789 76 6 1 614 689 395073705 395073779 2.710000e-17 100.0
33 TraesCS2B01G216900 chr4A 95.455 66 3 0 616 681 500769969 500770034 5.820000e-19 106.0
34 TraesCS2B01G216900 chr2D 87.912 91 9 2 3671 3760 37392461 37392550 5.820000e-19 106.0
35 TraesCS2B01G216900 chr2D 77.931 145 26 5 2318 2459 616632104 616632245 7.580000e-13 86.1
36 TraesCS2B01G216900 chr2D 79.630 108 19 3 2579 2685 642985074 642985179 1.640000e-09 75.0
37 TraesCS2B01G216900 chr2D 95.122 41 2 0 3015 3055 523308960 523308920 9.880000e-07 65.8
38 TraesCS2B01G216900 chr2D 82.090 67 12 0 2614 2680 381244556 381244490 1.650000e-04 58.4
39 TraesCS2B01G216900 chr5B 92.000 75 5 1 616 689 362031139 362031213 2.090000e-18 104.0
40 TraesCS2B01G216900 chr5B 86.667 90 6 5 593 676 609607700 609607611 1.260000e-15 95.3
41 TraesCS2B01G216900 chr1A 96.721 61 2 0 616 676 590991896 590991956 7.530000e-18 102.0
42 TraesCS2B01G216900 chr4B 87.778 90 5 2 595 678 432817379 432817290 2.710000e-17 100.0
43 TraesCS2B01G216900 chr7B 86.813 91 5 7 596 679 245854333 245854423 1.260000e-15 95.3
44 TraesCS2B01G216900 chr4D 79.808 104 5 9 590 677 310484133 310484236 1.280000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G216900 chr2B 203901992 203906248 4256 True 7862.000000 7862 100.000000 1 4257 1 chr2B.!!$R2 4256
1 TraesCS2B01G216900 chr2B 204915631 204922015 6384 True 854.222222 5269 92.486111 45 3883 9 chr2B.!!$R4 3838
2 TraesCS2B01G216900 chr2B 545152922 545153957 1035 False 606.000000 606 77.589000 2237 3284 1 chr2B.!!$F2 1047
3 TraesCS2B01G216900 chr2B 186403463 186404593 1130 False 538.000000 538 75.935000 2207 3355 1 chr2B.!!$F1 1148
4 TraesCS2B01G216900 chr2B 185761076 185762098 1022 True 496.000000 496 76.030000 2207 3255 1 chr2B.!!$R1 1048

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
353 1844 0.753262 ATCGCTCTAATTCACCGCCT 59.247 50.000 0.0 0.0 0.0 5.52 F
793 2479 2.675371 GGCCCAGAACCTACACCC 59.325 66.667 0.0 0.0 0.0 4.61 F
2454 4994 2.546789 CGCAACCTTCTTTACTTTCGGT 59.453 45.455 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2294 4834 2.030571 GCATTGCCTGGGATGATTCCA 61.031 52.381 0.0 0.0 44.6 3.53 R
2680 5227 0.606673 GAGACCCTGTTGTGCCCTTC 60.607 60.000 0.0 0.0 0.0 3.46 R
4115 6694 0.034896 AACCAAGCACCCTAGACACG 59.965 55.000 0.0 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.291888 TGATGTAAAAATTTGTTGAACATCCG 57.708 30.769 15.51 0.00 40.48 4.18
28 29 7.383572 TGATGTAAAAATTTGTTGAACATCCGG 59.616 33.333 15.51 0.00 40.48 5.14
29 30 6.574350 TGTAAAAATTTGTTGAACATCCGGT 58.426 32.000 0.00 0.00 0.00 5.28
30 31 7.042335 TGTAAAAATTTGTTGAACATCCGGTT 58.958 30.769 0.00 0.00 44.10 4.44
44 45 6.540438 ACATCCGGTTCTTTTGATAGTAGA 57.460 37.500 0.00 0.00 0.00 2.59
45 46 7.125792 ACATCCGGTTCTTTTGATAGTAGAT 57.874 36.000 0.00 0.00 0.00 1.98
46 47 6.986817 ACATCCGGTTCTTTTGATAGTAGATG 59.013 38.462 0.00 0.00 34.01 2.90
47 48 5.357257 TCCGGTTCTTTTGATAGTAGATGC 58.643 41.667 0.00 0.00 0.00 3.91
48 49 5.105106 TCCGGTTCTTTTGATAGTAGATGCA 60.105 40.000 0.00 0.00 0.00 3.96
84 791 7.816640 ACTATTTAATTGCACAATCAGAACGT 58.183 30.769 0.00 0.00 0.00 3.99
129 836 1.194781 ACAACAGAGGCCGGATGAGT 61.195 55.000 5.05 6.84 0.00 3.41
193 1649 1.827399 ATGCTCCCCGACACGTCTTT 61.827 55.000 0.00 0.00 0.00 2.52
215 1706 3.557228 AACATTGGAGAGGCTCTGATC 57.443 47.619 24.21 11.63 0.00 2.92
241 1732 2.753416 CGACAACGTTGTTGAAGCG 58.247 52.632 35.33 27.54 43.74 4.68
244 1735 1.657181 CAACGTTGTTGAAGCGGCC 60.657 57.895 20.21 0.00 0.00 6.13
260 1751 3.147595 CCCCGATGAGGCAGACGA 61.148 66.667 0.00 0.00 39.21 4.20
265 1756 1.406219 CGATGAGGCAGACGACAACG 61.406 60.000 0.00 0.00 45.75 4.10
331 1822 4.164796 TCCATGCCCTTATCCAGCATATAG 59.835 45.833 0.00 0.00 45.16 1.31
353 1844 0.753262 ATCGCTCTAATTCACCGCCT 59.247 50.000 0.00 0.00 0.00 5.52
579 2070 8.110860 TGGATCATGAAAAGGAAGTAAGAAAC 57.889 34.615 0.00 0.00 0.00 2.78
620 2111 5.043762 ACTCCCTCCATCCCAAAATACTAA 58.956 41.667 0.00 0.00 0.00 2.24
669 2160 5.470368 TGAGTCACTTATTTTGAGACGGAG 58.530 41.667 0.00 0.00 34.56 4.63
695 2187 6.815142 GGAGTATAACAGAAGAAAACCGCTTA 59.185 38.462 0.00 0.00 0.00 3.09
703 2195 6.147985 ACAGAAGAAAACCGCTTATTTCTCTC 59.852 38.462 7.61 7.77 43.24 3.20
706 2198 7.445707 AGAAGAAAACCGCTTATTTCTCTCTTT 59.554 33.333 7.61 0.00 43.24 2.52
707 2199 7.511959 AGAAAACCGCTTATTTCTCTCTTTT 57.488 32.000 0.00 0.00 40.87 2.27
738 2230 5.123502 GGGAAGAAGAAAACCGAATAGAACC 59.876 44.000 0.00 0.00 0.00 3.62
793 2479 2.675371 GGCCCAGAACCTACACCC 59.325 66.667 0.00 0.00 0.00 4.61
1992 4531 5.396101 CCTTTCACTCTCATATCAGCCTGAA 60.396 44.000 0.00 0.00 0.00 3.02
2294 4834 2.878406 GCACTTCACACATTGTACACCT 59.122 45.455 0.00 0.00 0.00 4.00
2454 4994 2.546789 CGCAACCTTCTTTACTTTCGGT 59.453 45.455 0.00 0.00 0.00 4.69
3049 5608 2.622942 TCTGTCAAGGCATGTTGTTTCC 59.377 45.455 0.00 0.00 0.00 3.13
3263 5828 6.462552 TTGAAGGACATGTTTGATTGTTCA 57.537 33.333 0.00 0.00 0.00 3.18
3345 5912 3.537580 TGTGGTTTGTGTAACTCTGGAC 58.462 45.455 0.00 0.00 38.04 4.02
3359 5926 0.386352 CTGGACGCATTTGTGCACTG 60.386 55.000 19.41 9.38 35.11 3.66
3361 5928 0.871722 GGACGCATTTGTGCACTGTA 59.128 50.000 19.41 3.40 34.41 2.74
3446 6013 7.698628 TCTATCTGTATCAACTTCTGACTTCG 58.301 38.462 0.00 0.00 36.69 3.79
3494 6061 6.034577 CAGTATGCAAAATGTCTTGATGCTTG 59.965 38.462 0.00 0.00 37.86 4.01
3500 6067 6.681120 GCAAAATGTCTTGATGCTTGCCTATA 60.681 38.462 0.00 0.00 33.31 1.31
3510 6077 6.591001 TGATGCTTGCCTATAGTTCATGTTA 58.409 36.000 0.00 0.00 0.00 2.41
3511 6078 6.707608 TGATGCTTGCCTATAGTTCATGTTAG 59.292 38.462 0.00 0.00 0.00 2.34
3514 6092 6.049149 GCTTGCCTATAGTTCATGTTAGTCA 58.951 40.000 0.00 0.00 0.00 3.41
3529 6107 5.962433 TGTTAGTCAGTCTAGCATGTTACC 58.038 41.667 0.00 0.00 35.50 2.85
3530 6108 5.715279 TGTTAGTCAGTCTAGCATGTTACCT 59.285 40.000 0.00 0.00 35.50 3.08
3552 6130 5.200368 TGCTTTCTCCAAAGATTTTGGAC 57.800 39.130 17.01 9.32 43.17 4.02
3592 6170 3.727419 GCATGAAGCAATTTCGCCT 57.273 47.368 0.00 0.00 44.79 5.52
3623 6202 3.659786 TGATGACAACTTCAGTTACCCG 58.340 45.455 0.00 0.00 37.77 5.28
3671 6250 4.005487 TGGCAAATTTCTGTTTGGATGG 57.995 40.909 0.00 0.00 39.03 3.51
3697 6276 7.518211 GCAAGTTTCAGTTGTTTTTGTGTTTCT 60.518 33.333 0.00 0.00 31.33 2.52
3742 6321 3.005791 AGTTGTAAAAATGTCAGGGCAGC 59.994 43.478 0.00 0.00 0.00 5.25
3750 6329 0.107831 TGTCAGGGCAGCGTTACTTT 59.892 50.000 0.00 0.00 0.00 2.66
3752 6331 0.107831 TCAGGGCAGCGTTACTTTGT 59.892 50.000 0.00 0.00 0.00 2.83
3782 6361 0.327924 TGGCACTCGTCATTTGGGAT 59.672 50.000 0.00 0.00 0.00 3.85
3783 6362 0.734889 GGCACTCGTCATTTGGGATG 59.265 55.000 0.00 0.00 0.00 3.51
3811 6390 8.810652 TTTTACAACTAAAATCAGATGGTTGC 57.189 30.769 13.87 0.00 37.95 4.17
3840 6419 3.354948 TGAGCTGCAACAACATATCCT 57.645 42.857 1.02 0.00 0.00 3.24
3859 6438 4.917385 TCCTGCTTATGTTTTGAAGCCTA 58.083 39.130 4.31 0.00 46.12 3.93
3868 6447 6.759497 ATGTTTTGAAGCCTATGTAACTCC 57.241 37.500 0.00 0.00 0.00 3.85
3883 6462 3.876309 AACTCCCAGCCACTAGAAAAA 57.124 42.857 0.00 0.00 0.00 1.94
3884 6463 3.141767 ACTCCCAGCCACTAGAAAAAC 57.858 47.619 0.00 0.00 0.00 2.43
3885 6464 2.076863 CTCCCAGCCACTAGAAAAACG 58.923 52.381 0.00 0.00 0.00 3.60
3886 6465 1.165270 CCCAGCCACTAGAAAAACGG 58.835 55.000 0.00 0.00 0.00 4.44
3887 6466 1.544759 CCCAGCCACTAGAAAAACGGT 60.545 52.381 0.00 0.00 0.00 4.83
3888 6467 2.227194 CCAGCCACTAGAAAAACGGTT 58.773 47.619 0.00 0.00 0.00 4.44
3889 6468 2.225727 CCAGCCACTAGAAAAACGGTTC 59.774 50.000 0.00 0.00 0.00 3.62
3890 6469 2.096417 CAGCCACTAGAAAAACGGTTCG 60.096 50.000 0.00 0.00 32.50 3.95
3891 6470 1.869132 GCCACTAGAAAAACGGTTCGT 59.131 47.619 0.00 0.00 43.97 3.85
3892 6471 2.349155 GCCACTAGAAAAACGGTTCGTG 60.349 50.000 0.00 0.00 39.99 4.35
3893 6472 2.349155 CCACTAGAAAAACGGTTCGTGC 60.349 50.000 0.00 0.00 39.99 5.34
3894 6473 1.869132 ACTAGAAAAACGGTTCGTGCC 59.131 47.619 0.00 0.00 39.99 5.01
3895 6474 1.196127 CTAGAAAAACGGTTCGTGCCC 59.804 52.381 0.00 0.00 39.99 5.36
3896 6475 1.008194 GAAAAACGGTTCGTGCCCC 60.008 57.895 0.00 0.00 39.99 5.80
3897 6476 2.410638 GAAAAACGGTTCGTGCCCCC 62.411 60.000 0.00 0.00 39.99 5.40
3898 6477 3.717924 AAAACGGTTCGTGCCCCCA 62.718 57.895 0.00 0.00 39.99 4.96
3899 6478 4.636435 AACGGTTCGTGCCCCCAG 62.636 66.667 0.00 0.00 39.99 4.45
3901 6480 4.636435 CGGTTCGTGCCCCCAGTT 62.636 66.667 0.00 0.00 0.00 3.16
3902 6481 2.203437 GGTTCGTGCCCCCAGTTT 60.203 61.111 0.00 0.00 0.00 2.66
3903 6482 1.830847 GGTTCGTGCCCCCAGTTTT 60.831 57.895 0.00 0.00 0.00 2.43
3904 6483 0.537828 GGTTCGTGCCCCCAGTTTTA 60.538 55.000 0.00 0.00 0.00 1.52
3905 6484 0.594602 GTTCGTGCCCCCAGTTTTAC 59.405 55.000 0.00 0.00 0.00 2.01
3906 6485 0.475044 TTCGTGCCCCCAGTTTTACT 59.525 50.000 0.00 0.00 0.00 2.24
3907 6486 1.350071 TCGTGCCCCCAGTTTTACTA 58.650 50.000 0.00 0.00 0.00 1.82
3908 6487 1.698532 TCGTGCCCCCAGTTTTACTAA 59.301 47.619 0.00 0.00 0.00 2.24
3909 6488 2.081462 CGTGCCCCCAGTTTTACTAAG 58.919 52.381 0.00 0.00 0.00 2.18
3910 6489 2.551504 CGTGCCCCCAGTTTTACTAAGT 60.552 50.000 0.00 0.00 0.00 2.24
3911 6490 3.079578 GTGCCCCCAGTTTTACTAAGTC 58.920 50.000 0.00 0.00 0.00 3.01
3912 6491 2.712087 TGCCCCCAGTTTTACTAAGTCA 59.288 45.455 0.00 0.00 0.00 3.41
3913 6492 3.244770 TGCCCCCAGTTTTACTAAGTCAG 60.245 47.826 0.00 0.00 0.00 3.51
3914 6493 3.344515 CCCCCAGTTTTACTAAGTCAGC 58.655 50.000 0.00 0.00 0.00 4.26
3915 6494 3.009143 CCCCCAGTTTTACTAAGTCAGCT 59.991 47.826 0.00 0.00 0.00 4.24
3916 6495 4.506802 CCCCCAGTTTTACTAAGTCAGCTT 60.507 45.833 0.00 0.00 38.66 3.74
3917 6496 4.455877 CCCCAGTTTTACTAAGTCAGCTTG 59.544 45.833 0.00 0.00 36.22 4.01
3918 6497 5.063880 CCCAGTTTTACTAAGTCAGCTTGT 58.936 41.667 0.00 0.00 36.22 3.16
3919 6498 6.228258 CCCAGTTTTACTAAGTCAGCTTGTA 58.772 40.000 0.00 0.00 36.22 2.41
3920 6499 6.147328 CCCAGTTTTACTAAGTCAGCTTGTAC 59.853 42.308 0.00 0.00 36.22 2.90
3921 6500 6.704493 CCAGTTTTACTAAGTCAGCTTGTACA 59.296 38.462 0.00 0.00 36.22 2.90
3922 6501 7.387948 CCAGTTTTACTAAGTCAGCTTGTACAT 59.612 37.037 0.00 0.00 36.22 2.29
3923 6502 8.436200 CAGTTTTACTAAGTCAGCTTGTACATC 58.564 37.037 0.00 0.00 36.22 3.06
3924 6503 8.368668 AGTTTTACTAAGTCAGCTTGTACATCT 58.631 33.333 0.00 0.00 36.22 2.90
3925 6504 9.635520 GTTTTACTAAGTCAGCTTGTACATCTA 57.364 33.333 0.00 0.00 36.22 1.98
3926 6505 9.635520 TTTTACTAAGTCAGCTTGTACATCTAC 57.364 33.333 0.00 0.00 36.22 2.59
3927 6506 6.835819 ACTAAGTCAGCTTGTACATCTACA 57.164 37.500 0.00 0.00 36.22 2.74
3928 6507 7.411486 ACTAAGTCAGCTTGTACATCTACAT 57.589 36.000 0.00 0.00 36.22 2.29
3929 6508 7.484975 ACTAAGTCAGCTTGTACATCTACATC 58.515 38.462 0.00 0.00 36.22 3.06
3930 6509 5.921962 AGTCAGCTTGTACATCTACATCA 57.078 39.130 0.00 0.00 32.70 3.07
3931 6510 6.286240 AGTCAGCTTGTACATCTACATCAA 57.714 37.500 0.00 0.00 32.70 2.57
3932 6511 6.102663 AGTCAGCTTGTACATCTACATCAAC 58.897 40.000 0.00 0.00 32.70 3.18
3933 6512 6.071108 AGTCAGCTTGTACATCTACATCAACT 60.071 38.462 0.00 0.00 32.70 3.16
3934 6513 7.122799 AGTCAGCTTGTACATCTACATCAACTA 59.877 37.037 0.00 0.00 32.70 2.24
3935 6514 7.923344 GTCAGCTTGTACATCTACATCAACTAT 59.077 37.037 0.00 0.00 32.70 2.12
3936 6515 9.131791 TCAGCTTGTACATCTACATCAACTATA 57.868 33.333 0.00 0.00 32.70 1.31
3937 6516 9.920133 CAGCTTGTACATCTACATCAACTATAT 57.080 33.333 0.00 0.00 32.70 0.86
3938 6517 9.920133 AGCTTGTACATCTACATCAACTATATG 57.080 33.333 0.00 0.00 32.70 1.78
3939 6518 9.698309 GCTTGTACATCTACATCAACTATATGT 57.302 33.333 0.00 0.00 40.57 2.29
3941 6520 9.981114 TTGTACATCTACATCAACTATATGTGG 57.019 33.333 0.00 0.00 38.05 4.17
3942 6521 9.362151 TGTACATCTACATCAACTATATGTGGA 57.638 33.333 5.00 5.00 45.25 4.02
3945 6524 9.093458 ACATCTACATCAACTATATGTGGATCA 57.907 33.333 10.85 0.00 46.46 2.92
3948 6527 9.093458 TCTACATCAACTATATGTGGATCATGT 57.907 33.333 0.00 0.00 39.16 3.21
3949 6528 9.716531 CTACATCAACTATATGTGGATCATGTT 57.283 33.333 0.00 0.00 37.23 2.71
3950 6529 8.985315 ACATCAACTATATGTGGATCATGTTT 57.015 30.769 0.00 0.00 37.23 2.83
3951 6530 9.060347 ACATCAACTATATGTGGATCATGTTTC 57.940 33.333 0.00 0.00 37.23 2.78
3952 6531 9.059260 CATCAACTATATGTGGATCATGTTTCA 57.941 33.333 0.00 0.00 37.23 2.69
3953 6532 8.667076 TCAACTATATGTGGATCATGTTTCAG 57.333 34.615 0.00 0.00 37.91 3.02
3954 6533 8.267183 TCAACTATATGTGGATCATGTTTCAGT 58.733 33.333 0.00 0.00 37.91 3.41
3955 6534 8.896744 CAACTATATGTGGATCATGTTTCAGTT 58.103 33.333 0.00 0.00 37.91 3.16
3956 6535 9.466497 AACTATATGTGGATCATGTTTCAGTTT 57.534 29.630 0.00 0.00 37.91 2.66
3957 6536 9.466497 ACTATATGTGGATCATGTTTCAGTTTT 57.534 29.630 0.00 0.00 37.91 2.43
3960 6539 7.765695 ATGTGGATCATGTTTCAGTTTTACT 57.234 32.000 0.00 0.00 35.19 2.24
3961 6540 8.862325 ATGTGGATCATGTTTCAGTTTTACTA 57.138 30.769 0.00 0.00 35.19 1.82
3962 6541 8.684386 TGTGGATCATGTTTCAGTTTTACTAA 57.316 30.769 0.00 0.00 0.00 2.24
3963 6542 8.783093 TGTGGATCATGTTTCAGTTTTACTAAG 58.217 33.333 0.00 0.00 0.00 2.18
3964 6543 8.784043 GTGGATCATGTTTCAGTTTTACTAAGT 58.216 33.333 0.00 0.00 0.00 2.24
3965 6544 8.999431 TGGATCATGTTTCAGTTTTACTAAGTC 58.001 33.333 0.00 0.00 0.00 3.01
3966 6545 8.999431 GGATCATGTTTCAGTTTTACTAAGTCA 58.001 33.333 0.00 0.00 0.00 3.41
3968 6547 7.861630 TCATGTTTCAGTTTTACTAAGTCAGC 58.138 34.615 0.00 0.00 0.00 4.26
3969 6548 7.715249 TCATGTTTCAGTTTTACTAAGTCAGCT 59.285 33.333 0.00 0.00 0.00 4.24
3970 6549 7.859325 TGTTTCAGTTTTACTAAGTCAGCTT 57.141 32.000 0.00 0.00 38.66 3.74
3971 6550 7.693952 TGTTTCAGTTTTACTAAGTCAGCTTG 58.306 34.615 0.00 0.00 36.22 4.01
3972 6551 7.335924 TGTTTCAGTTTTACTAAGTCAGCTTGT 59.664 33.333 0.00 0.00 36.22 3.16
3973 6552 8.823818 GTTTCAGTTTTACTAAGTCAGCTTGTA 58.176 33.333 0.00 0.00 36.22 2.41
3974 6553 7.941795 TCAGTTTTACTAAGTCAGCTTGTAC 57.058 36.000 0.00 0.00 36.22 2.90
3975 6554 7.494211 TCAGTTTTACTAAGTCAGCTTGTACA 58.506 34.615 0.00 0.00 36.22 2.90
3976 6555 8.148351 TCAGTTTTACTAAGTCAGCTTGTACAT 58.852 33.333 0.00 0.00 36.22 2.29
3977 6556 8.436200 CAGTTTTACTAAGTCAGCTTGTACATC 58.564 37.037 0.00 0.00 36.22 3.06
3978 6557 8.148351 AGTTTTACTAAGTCAGCTTGTACATCA 58.852 33.333 0.00 0.00 36.22 3.07
3979 6558 8.770828 GTTTTACTAAGTCAGCTTGTACATCAA 58.229 33.333 0.00 0.00 36.22 2.57
3980 6559 7.884816 TTACTAAGTCAGCTTGTACATCAAC 57.115 36.000 0.00 0.00 36.22 3.18
3981 6560 6.102897 ACTAAGTCAGCTTGTACATCAACT 57.897 37.500 0.00 0.00 36.22 3.16
3982 6561 7.228314 ACTAAGTCAGCTTGTACATCAACTA 57.772 36.000 0.00 0.00 36.22 2.24
3983 6562 7.091443 ACTAAGTCAGCTTGTACATCAACTAC 58.909 38.462 0.00 0.00 36.22 2.73
3984 6563 5.468540 AGTCAGCTTGTACATCAACTACA 57.531 39.130 0.00 0.00 32.18 2.74
3985 6564 6.042638 AGTCAGCTTGTACATCAACTACAT 57.957 37.500 0.00 0.00 32.18 2.29
3986 6565 5.871524 AGTCAGCTTGTACATCAACTACATG 59.128 40.000 0.00 0.00 32.18 3.21
3987 6566 5.639506 GTCAGCTTGTACATCAACTACATGT 59.360 40.000 2.69 2.69 38.13 3.21
3988 6567 5.639082 TCAGCTTGTACATCAACTACATGTG 59.361 40.000 9.11 0.93 35.95 3.21
3989 6568 4.937620 AGCTTGTACATCAACTACATGTGG 59.062 41.667 9.11 8.41 35.95 4.17
3990 6569 4.935205 GCTTGTACATCAACTACATGTGGA 59.065 41.667 16.98 5.08 35.95 4.02
3991 6570 5.586243 GCTTGTACATCAACTACATGTGGAT 59.414 40.000 16.98 0.19 39.84 3.41
3992 6571 6.238211 GCTTGTACATCAACTACATGTGGATC 60.238 42.308 16.98 0.34 37.23 3.36
3993 6572 6.293004 TGTACATCAACTACATGTGGATCA 57.707 37.500 16.98 0.00 37.23 2.92
3994 6573 6.888105 TGTACATCAACTACATGTGGATCAT 58.112 36.000 16.98 0.00 37.23 2.45
4005 6584 5.381174 CATGTGGATCATGTTTCACTTGT 57.619 39.130 17.28 3.82 46.18 3.16
4006 6585 4.834357 TGTGGATCATGTTTCACTTGTG 57.166 40.909 14.84 0.00 0.00 3.33
4007 6586 4.206375 TGTGGATCATGTTTCACTTGTGT 58.794 39.130 14.84 0.00 0.00 3.72
4008 6587 4.275689 TGTGGATCATGTTTCACTTGTGTC 59.724 41.667 14.84 0.00 0.00 3.67
4009 6588 3.498018 TGGATCATGTTTCACTTGTGTCG 59.502 43.478 0.00 0.00 0.00 4.35
4010 6589 3.120199 GGATCATGTTTCACTTGTGTCGG 60.120 47.826 0.00 0.00 0.00 4.79
4011 6590 3.186702 TCATGTTTCACTTGTGTCGGA 57.813 42.857 0.46 0.00 0.00 4.55
4012 6591 3.536570 TCATGTTTCACTTGTGTCGGAA 58.463 40.909 0.46 0.00 0.00 4.30
4013 6592 3.559655 TCATGTTTCACTTGTGTCGGAAG 59.440 43.478 0.46 0.00 0.00 3.46
4014 6593 3.254470 TGTTTCACTTGTGTCGGAAGA 57.746 42.857 0.46 0.00 38.16 2.87
4015 6594 3.601435 TGTTTCACTTGTGTCGGAAGAA 58.399 40.909 0.46 0.00 45.01 2.52
4016 6595 4.004314 TGTTTCACTTGTGTCGGAAGAAA 58.996 39.130 0.46 0.00 45.01 2.52
4026 6605 5.003061 GTGTCGGAAGAAACTAAGAAACG 57.997 43.478 0.00 0.00 45.07 3.60
4027 6606 4.741676 GTGTCGGAAGAAACTAAGAAACGA 59.258 41.667 0.00 0.00 45.07 3.85
4028 6607 5.232838 GTGTCGGAAGAAACTAAGAAACGAA 59.767 40.000 0.00 0.00 45.07 3.85
4029 6608 5.461078 TGTCGGAAGAAACTAAGAAACGAAG 59.539 40.000 0.00 0.00 45.01 3.79
4030 6609 4.446719 TCGGAAGAAACTAAGAAACGAAGC 59.553 41.667 0.00 0.00 37.03 3.86
4031 6610 4.210537 CGGAAGAAACTAAGAAACGAAGCA 59.789 41.667 0.00 0.00 0.00 3.91
4032 6611 5.107065 CGGAAGAAACTAAGAAACGAAGCAT 60.107 40.000 0.00 0.00 0.00 3.79
4033 6612 6.080406 GGAAGAAACTAAGAAACGAAGCATG 58.920 40.000 0.00 0.00 0.00 4.06
4034 6613 6.073222 GGAAGAAACTAAGAAACGAAGCATGA 60.073 38.462 0.00 0.00 0.00 3.07
4035 6614 6.229561 AGAAACTAAGAAACGAAGCATGAC 57.770 37.500 0.00 0.00 0.00 3.06
4036 6615 5.179555 AGAAACTAAGAAACGAAGCATGACC 59.820 40.000 0.00 0.00 0.00 4.02
4037 6616 4.002906 ACTAAGAAACGAAGCATGACCA 57.997 40.909 0.00 0.00 0.00 4.02
4038 6617 3.997021 ACTAAGAAACGAAGCATGACCAG 59.003 43.478 0.00 0.00 0.00 4.00
4039 6618 2.839486 AGAAACGAAGCATGACCAGA 57.161 45.000 0.00 0.00 0.00 3.86
4040 6619 3.126001 AGAAACGAAGCATGACCAGAA 57.874 42.857 0.00 0.00 0.00 3.02
4041 6620 2.808543 AGAAACGAAGCATGACCAGAAC 59.191 45.455 0.00 0.00 0.00 3.01
4042 6621 2.254546 AACGAAGCATGACCAGAACA 57.745 45.000 0.00 0.00 0.00 3.18
4043 6622 1.512926 ACGAAGCATGACCAGAACAC 58.487 50.000 0.00 0.00 0.00 3.32
4044 6623 1.070758 ACGAAGCATGACCAGAACACT 59.929 47.619 0.00 0.00 0.00 3.55
4045 6624 2.299013 ACGAAGCATGACCAGAACACTA 59.701 45.455 0.00 0.00 0.00 2.74
4046 6625 3.244078 ACGAAGCATGACCAGAACACTAA 60.244 43.478 0.00 0.00 0.00 2.24
4047 6626 3.935203 CGAAGCATGACCAGAACACTAAT 59.065 43.478 0.00 0.00 0.00 1.73
4048 6627 4.393062 CGAAGCATGACCAGAACACTAATT 59.607 41.667 0.00 0.00 0.00 1.40
4049 6628 5.580691 CGAAGCATGACCAGAACACTAATTA 59.419 40.000 0.00 0.00 0.00 1.40
4050 6629 6.092122 CGAAGCATGACCAGAACACTAATTAA 59.908 38.462 0.00 0.00 0.00 1.40
4051 6630 7.360861 CGAAGCATGACCAGAACACTAATTAAA 60.361 37.037 0.00 0.00 0.00 1.52
4052 6631 7.944729 AGCATGACCAGAACACTAATTAAAT 57.055 32.000 0.00 0.00 0.00 1.40
4053 6632 7.989826 AGCATGACCAGAACACTAATTAAATC 58.010 34.615 0.00 0.00 0.00 2.17
4054 6633 7.067494 AGCATGACCAGAACACTAATTAAATCC 59.933 37.037 0.00 0.00 0.00 3.01
4055 6634 7.682021 GCATGACCAGAACACTAATTAAATCCC 60.682 40.741 0.00 0.00 0.00 3.85
4056 6635 6.184789 TGACCAGAACACTAATTAAATCCCC 58.815 40.000 0.00 0.00 0.00 4.81
4057 6636 6.147437 ACCAGAACACTAATTAAATCCCCA 57.853 37.500 0.00 0.00 0.00 4.96
4058 6637 6.187682 ACCAGAACACTAATTAAATCCCCAG 58.812 40.000 0.00 0.00 0.00 4.45
4059 6638 6.011981 ACCAGAACACTAATTAAATCCCCAGA 60.012 38.462 0.00 0.00 0.00 3.86
4060 6639 6.889722 CCAGAACACTAATTAAATCCCCAGAA 59.110 38.462 0.00 0.00 0.00 3.02
4061 6640 7.396055 CCAGAACACTAATTAAATCCCCAGAAA 59.604 37.037 0.00 0.00 0.00 2.52
4062 6641 8.802267 CAGAACACTAATTAAATCCCCAGAAAA 58.198 33.333 0.00 0.00 0.00 2.29
4063 6642 8.803235 AGAACACTAATTAAATCCCCAGAAAAC 58.197 33.333 0.00 0.00 0.00 2.43
4064 6643 8.721133 AACACTAATTAAATCCCCAGAAAACT 57.279 30.769 0.00 0.00 0.00 2.66
4065 6644 9.816787 AACACTAATTAAATCCCCAGAAAACTA 57.183 29.630 0.00 0.00 0.00 2.24
4066 6645 9.816787 ACACTAATTAAATCCCCAGAAAACTAA 57.183 29.630 0.00 0.00 0.00 2.24
4072 6651 9.772973 ATTAAATCCCCAGAAAACTAAAACAAC 57.227 29.630 0.00 0.00 0.00 3.32
4073 6652 4.904253 TCCCCAGAAAACTAAAACAACG 57.096 40.909 0.00 0.00 0.00 4.10
4074 6653 3.067040 TCCCCAGAAAACTAAAACAACGC 59.933 43.478 0.00 0.00 0.00 4.84
4075 6654 3.067601 CCCCAGAAAACTAAAACAACGCT 59.932 43.478 0.00 0.00 0.00 5.07
4076 6655 4.276431 CCCCAGAAAACTAAAACAACGCTA 59.724 41.667 0.00 0.00 0.00 4.26
4077 6656 5.449304 CCCAGAAAACTAAAACAACGCTAG 58.551 41.667 0.00 0.00 0.00 3.42
4078 6657 4.909880 CCAGAAAACTAAAACAACGCTAGC 59.090 41.667 4.06 4.06 0.00 3.42
4079 6658 4.607235 CAGAAAACTAAAACAACGCTAGCG 59.393 41.667 34.27 34.27 46.03 4.26
4102 6681 2.884207 CCTTCGGGCGTCGCTAAC 60.884 66.667 18.11 7.09 39.05 2.34
4123 6702 3.231260 CGCGTGCGTCGTGTCTAG 61.231 66.667 6.00 0.00 43.87 2.43
4124 6703 2.874780 GCGTGCGTCGTGTCTAGG 60.875 66.667 0.00 0.00 42.13 3.02
4125 6704 2.202440 CGTGCGTCGTGTCTAGGG 60.202 66.667 0.00 0.00 34.52 3.53
4126 6705 2.960170 GTGCGTCGTGTCTAGGGT 59.040 61.111 0.00 0.00 0.00 4.34
4127 6706 1.443872 GTGCGTCGTGTCTAGGGTG 60.444 63.158 0.00 0.00 0.00 4.61
4128 6707 2.506438 GCGTCGTGTCTAGGGTGC 60.506 66.667 0.00 0.00 0.00 5.01
4129 6708 2.991076 GCGTCGTGTCTAGGGTGCT 61.991 63.158 0.00 0.00 0.00 4.40
4130 6709 1.585006 CGTCGTGTCTAGGGTGCTT 59.415 57.895 0.00 0.00 0.00 3.91
4131 6710 0.732880 CGTCGTGTCTAGGGTGCTTG 60.733 60.000 0.00 0.00 0.00 4.01
4132 6711 0.389948 GTCGTGTCTAGGGTGCTTGG 60.390 60.000 0.00 0.00 0.00 3.61
4133 6712 0.830444 TCGTGTCTAGGGTGCTTGGT 60.830 55.000 0.00 0.00 0.00 3.67
4134 6713 0.034896 CGTGTCTAGGGTGCTTGGTT 59.965 55.000 0.00 0.00 0.00 3.67
4135 6714 1.274167 CGTGTCTAGGGTGCTTGGTTA 59.726 52.381 0.00 0.00 0.00 2.85
4136 6715 2.696506 GTGTCTAGGGTGCTTGGTTAC 58.303 52.381 0.00 0.00 0.00 2.50
4137 6716 1.626825 TGTCTAGGGTGCTTGGTTACC 59.373 52.381 0.00 0.00 36.21 2.85
4138 6717 1.907255 GTCTAGGGTGCTTGGTTACCT 59.093 52.381 2.07 0.00 37.15 3.08
4139 6718 2.093606 GTCTAGGGTGCTTGGTTACCTC 60.094 54.545 2.07 0.00 37.15 3.85
4140 6719 0.899720 TAGGGTGCTTGGTTACCTCG 59.100 55.000 2.07 0.00 37.15 4.63
4141 6720 0.834687 AGGGTGCTTGGTTACCTCGA 60.835 55.000 2.07 0.00 37.15 4.04
4142 6721 0.252197 GGGTGCTTGGTTACCTCGAT 59.748 55.000 2.07 0.00 37.15 3.59
4143 6722 1.339727 GGGTGCTTGGTTACCTCGATT 60.340 52.381 2.07 0.00 37.15 3.34
4144 6723 2.093341 GGGTGCTTGGTTACCTCGATTA 60.093 50.000 2.07 0.00 37.15 1.75
4145 6724 3.195661 GGTGCTTGGTTACCTCGATTAG 58.804 50.000 2.07 0.00 34.11 1.73
4157 6736 4.148563 CCTCGATTAGGTAGATCACGTG 57.851 50.000 9.94 9.94 40.94 4.49
4158 6737 3.556513 CTCGATTAGGTAGATCACGTGC 58.443 50.000 11.67 0.00 0.00 5.34
4159 6738 3.211865 TCGATTAGGTAGATCACGTGCT 58.788 45.455 11.67 0.00 0.00 4.40
4160 6739 4.383173 TCGATTAGGTAGATCACGTGCTA 58.617 43.478 11.67 4.63 0.00 3.49
4161 6740 4.451435 TCGATTAGGTAGATCACGTGCTAG 59.549 45.833 11.67 0.00 0.00 3.42
4162 6741 4.213694 CGATTAGGTAGATCACGTGCTAGT 59.786 45.833 11.67 1.98 0.00 2.57
4163 6742 5.615106 CGATTAGGTAGATCACGTGCTAGTC 60.615 48.000 11.67 10.28 0.00 2.59
4164 6743 2.299521 AGGTAGATCACGTGCTAGTCC 58.700 52.381 11.67 10.39 0.00 3.85
4165 6744 2.022195 GGTAGATCACGTGCTAGTCCA 58.978 52.381 11.67 0.00 0.00 4.02
4166 6745 2.623889 GGTAGATCACGTGCTAGTCCAT 59.376 50.000 11.67 0.00 0.00 3.41
4167 6746 3.819337 GGTAGATCACGTGCTAGTCCATA 59.181 47.826 11.67 0.00 0.00 2.74
4168 6747 4.459685 GGTAGATCACGTGCTAGTCCATAT 59.540 45.833 11.67 0.00 0.00 1.78
4169 6748 5.047943 GGTAGATCACGTGCTAGTCCATATT 60.048 44.000 11.67 0.00 0.00 1.28
4170 6749 5.127693 AGATCACGTGCTAGTCCATATTC 57.872 43.478 11.67 0.00 0.00 1.75
4171 6750 3.728076 TCACGTGCTAGTCCATATTCC 57.272 47.619 11.67 0.00 0.00 3.01
4172 6751 2.364324 TCACGTGCTAGTCCATATTCCC 59.636 50.000 11.67 0.00 0.00 3.97
4173 6752 1.692519 ACGTGCTAGTCCATATTCCCC 59.307 52.381 0.00 0.00 0.00 4.81
4174 6753 1.691976 CGTGCTAGTCCATATTCCCCA 59.308 52.381 0.00 0.00 0.00 4.96
4175 6754 2.303022 CGTGCTAGTCCATATTCCCCAT 59.697 50.000 0.00 0.00 0.00 4.00
4176 6755 3.244561 CGTGCTAGTCCATATTCCCCATT 60.245 47.826 0.00 0.00 0.00 3.16
4177 6756 4.729868 GTGCTAGTCCATATTCCCCATTT 58.270 43.478 0.00 0.00 0.00 2.32
4178 6757 4.762251 GTGCTAGTCCATATTCCCCATTTC 59.238 45.833 0.00 0.00 0.00 2.17
4179 6758 4.202567 TGCTAGTCCATATTCCCCATTTCC 60.203 45.833 0.00 0.00 0.00 3.13
4180 6759 4.043435 GCTAGTCCATATTCCCCATTTCCT 59.957 45.833 0.00 0.00 0.00 3.36
4181 6760 5.458215 GCTAGTCCATATTCCCCATTTCCTT 60.458 44.000 0.00 0.00 0.00 3.36
4182 6761 6.240176 GCTAGTCCATATTCCCCATTTCCTTA 60.240 42.308 0.00 0.00 0.00 2.69
4183 6762 6.606241 AGTCCATATTCCCCATTTCCTTAA 57.394 37.500 0.00 0.00 0.00 1.85
4184 6763 6.373759 AGTCCATATTCCCCATTTCCTTAAC 58.626 40.000 0.00 0.00 0.00 2.01
4185 6764 5.240844 GTCCATATTCCCCATTTCCTTAACG 59.759 44.000 0.00 0.00 0.00 3.18
4186 6765 5.132985 TCCATATTCCCCATTTCCTTAACGA 59.867 40.000 0.00 0.00 0.00 3.85
4187 6766 5.240844 CCATATTCCCCATTTCCTTAACGAC 59.759 44.000 0.00 0.00 0.00 4.34
4188 6767 3.791953 TTCCCCATTTCCTTAACGACA 57.208 42.857 0.00 0.00 0.00 4.35
4189 6768 3.791953 TCCCCATTTCCTTAACGACAA 57.208 42.857 0.00 0.00 0.00 3.18
4190 6769 4.101645 TCCCCATTTCCTTAACGACAAA 57.898 40.909 0.00 0.00 0.00 2.83
4191 6770 4.471548 TCCCCATTTCCTTAACGACAAAA 58.528 39.130 0.00 0.00 0.00 2.44
4192 6771 5.081032 TCCCCATTTCCTTAACGACAAAAT 58.919 37.500 0.00 0.00 0.00 1.82
4193 6772 5.540719 TCCCCATTTCCTTAACGACAAAATT 59.459 36.000 0.00 0.00 0.00 1.82
4194 6773 6.042208 TCCCCATTTCCTTAACGACAAAATTT 59.958 34.615 0.00 0.00 0.00 1.82
4195 6774 7.232941 TCCCCATTTCCTTAACGACAAAATTTA 59.767 33.333 0.00 0.00 0.00 1.40
4196 6775 7.544217 CCCCATTTCCTTAACGACAAAATTTAG 59.456 37.037 0.00 0.00 0.00 1.85
4197 6776 8.085909 CCCATTTCCTTAACGACAAAATTTAGT 58.914 33.333 0.00 0.00 0.00 2.24
4208 6787 7.672738 ACGACAAAATTTAGTACTAGAATGCG 58.327 34.615 2.23 9.69 0.00 4.73
4209 6788 7.543172 ACGACAAAATTTAGTACTAGAATGCGA 59.457 33.333 2.23 0.00 0.00 5.10
4210 6789 8.050750 CGACAAAATTTAGTACTAGAATGCGAG 58.949 37.037 2.23 2.27 0.00 5.03
4211 6790 7.685594 ACAAAATTTAGTACTAGAATGCGAGC 58.314 34.615 2.23 0.00 0.00 5.03
4212 6791 6.512177 AAATTTAGTACTAGAATGCGAGCG 57.488 37.500 2.23 0.00 0.00 5.03
4213 6792 2.682952 TAGTACTAGAATGCGAGCGC 57.317 50.000 8.08 8.08 42.35 5.92
4214 6793 1.025812 AGTACTAGAATGCGAGCGCT 58.974 50.000 11.27 11.27 42.51 5.92
4215 6794 1.124462 GTACTAGAATGCGAGCGCTG 58.876 55.000 18.48 8.79 42.51 5.18
4216 6795 0.738975 TACTAGAATGCGAGCGCTGT 59.261 50.000 18.48 5.40 42.51 4.40
4217 6796 0.108615 ACTAGAATGCGAGCGCTGTT 60.109 50.000 18.48 3.81 42.51 3.16
4218 6797 0.574454 CTAGAATGCGAGCGCTGTTC 59.426 55.000 18.48 13.69 42.51 3.18
4219 6798 0.806102 TAGAATGCGAGCGCTGTTCC 60.806 55.000 18.48 0.00 42.51 3.62
4220 6799 3.100862 GAATGCGAGCGCTGTTCCC 62.101 63.158 18.48 0.00 42.51 3.97
4221 6800 3.612247 AATGCGAGCGCTGTTCCCT 62.612 57.895 18.48 0.00 42.51 4.20
4222 6801 3.612247 ATGCGAGCGCTGTTCCCTT 62.612 57.895 18.48 0.00 42.51 3.95
4223 6802 3.050275 GCGAGCGCTGTTCCCTTT 61.050 61.111 18.48 0.00 38.26 3.11
4224 6803 3.028366 GCGAGCGCTGTTCCCTTTC 62.028 63.158 18.48 0.00 38.26 2.62
4225 6804 2.391389 CGAGCGCTGTTCCCTTTCC 61.391 63.158 18.48 0.00 0.00 3.13
4226 6805 1.302511 GAGCGCTGTTCCCTTTCCA 60.303 57.895 18.48 0.00 0.00 3.53
4227 6806 0.889186 GAGCGCTGTTCCCTTTCCAA 60.889 55.000 18.48 0.00 0.00 3.53
4228 6807 0.890996 AGCGCTGTTCCCTTTCCAAG 60.891 55.000 10.39 0.00 0.00 3.61
4229 6808 1.172812 GCGCTGTTCCCTTTCCAAGT 61.173 55.000 0.00 0.00 0.00 3.16
4230 6809 0.875059 CGCTGTTCCCTTTCCAAGTC 59.125 55.000 0.00 0.00 0.00 3.01
4231 6810 0.875059 GCTGTTCCCTTTCCAAGTCG 59.125 55.000 0.00 0.00 0.00 4.18
4232 6811 1.523758 CTGTTCCCTTTCCAAGTCGG 58.476 55.000 0.00 0.00 0.00 4.79
4233 6812 0.841289 TGTTCCCTTTCCAAGTCGGT 59.159 50.000 0.00 0.00 35.57 4.69
4234 6813 1.202722 TGTTCCCTTTCCAAGTCGGTC 60.203 52.381 0.00 0.00 35.57 4.79
4235 6814 1.071857 GTTCCCTTTCCAAGTCGGTCT 59.928 52.381 0.00 0.00 35.57 3.85
4236 6815 0.974383 TCCCTTTCCAAGTCGGTCTC 59.026 55.000 0.00 0.00 35.57 3.36
4237 6816 0.389948 CCCTTTCCAAGTCGGTCTCG 60.390 60.000 0.00 0.00 35.57 4.04
4238 6817 1.014564 CCTTTCCAAGTCGGTCTCGC 61.015 60.000 0.00 0.00 36.13 5.03
4239 6818 1.344942 CTTTCCAAGTCGGTCTCGCG 61.345 60.000 0.00 0.00 36.13 5.87
4240 6819 1.798234 TTTCCAAGTCGGTCTCGCGA 61.798 55.000 9.26 9.26 36.13 5.87
4241 6820 1.798234 TTCCAAGTCGGTCTCGCGAA 61.798 55.000 11.33 0.00 36.13 4.70
4242 6821 2.087009 CCAAGTCGGTCTCGCGAAC 61.087 63.158 11.33 11.39 36.13 3.95
4248 6827 4.736896 GGTCTCGCGAACGGGCTT 62.737 66.667 11.33 0.00 40.58 4.35
4249 6828 3.479269 GTCTCGCGAACGGGCTTG 61.479 66.667 11.33 0.00 40.58 4.01
4250 6829 4.735132 TCTCGCGAACGGGCTTGG 62.735 66.667 11.33 0.00 40.58 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.383572 CCGGATGTTCAACAAATTTTTACATCA 59.616 33.333 15.50 3.10 41.14 3.07
3 4 7.383843 ACCGGATGTTCAACAAATTTTTACATC 59.616 33.333 9.46 9.01 39.56 3.06
6 7 7.471657 AACCGGATGTTCAACAAATTTTTAC 57.528 32.000 9.46 0.00 28.45 2.01
20 21 6.942976 TCTACTATCAAAAGAACCGGATGTT 58.057 36.000 9.46 0.00 40.81 2.71
21 22 6.540438 TCTACTATCAAAAGAACCGGATGT 57.460 37.500 9.46 0.00 0.00 3.06
22 23 6.073548 GCATCTACTATCAAAAGAACCGGATG 60.074 42.308 9.46 0.00 0.00 3.51
25 26 5.116180 TGCATCTACTATCAAAAGAACCGG 58.884 41.667 0.00 0.00 0.00 5.28
26 27 6.851222 ATGCATCTACTATCAAAAGAACCG 57.149 37.500 0.00 0.00 0.00 4.44
27 28 8.462016 ACAAATGCATCTACTATCAAAAGAACC 58.538 33.333 0.00 0.00 0.00 3.62
28 29 9.846248 AACAAATGCATCTACTATCAAAAGAAC 57.154 29.630 0.00 0.00 0.00 3.01
30 31 9.844790 CAAACAAATGCATCTACTATCAAAAGA 57.155 29.630 0.00 0.00 0.00 2.52
31 32 8.589629 GCAAACAAATGCATCTACTATCAAAAG 58.410 33.333 0.00 0.00 45.70 2.27
32 33 8.464770 GCAAACAAATGCATCTACTATCAAAA 57.535 30.769 0.00 0.00 45.70 2.44
102 809 2.556622 CCGGCCTCTGTTGTTTGTAAAT 59.443 45.455 0.00 0.00 0.00 1.40
105 812 0.759959 TCCGGCCTCTGTTGTTTGTA 59.240 50.000 0.00 0.00 0.00 2.41
129 836 1.002624 GAGTGGCCAAATGTCCGGA 60.003 57.895 7.24 0.00 0.00 5.14
133 840 2.749621 CCAACTAGAGTGGCCAAATGTC 59.250 50.000 7.24 1.70 0.00 3.06
181 1637 3.495377 TCCAATGTTTAAAGACGTGTCGG 59.505 43.478 0.00 0.00 34.09 4.79
182 1638 4.446385 TCTCCAATGTTTAAAGACGTGTCG 59.554 41.667 0.00 0.00 34.09 4.35
193 1649 4.471025 TGATCAGAGCCTCTCCAATGTTTA 59.529 41.667 0.00 0.00 0.00 2.01
244 1735 2.105128 GTCGTCTGCCTCATCGGG 59.895 66.667 0.00 0.00 0.00 5.14
260 1751 2.288961 ACTTGTCTCAACGACGTTGT 57.711 45.000 32.97 14.78 45.87 3.32
265 1756 1.940613 AGGCAAACTTGTCTCAACGAC 59.059 47.619 0.00 0.00 39.25 4.34
278 1769 2.546778 TCACCGATATTCGAGGCAAAC 58.453 47.619 0.00 0.00 43.74 2.93
331 1822 1.523095 GCGGTGAATTAGAGCGATGTC 59.477 52.381 11.57 0.00 36.43 3.06
353 1844 2.821969 GTGAGGGTAACGTGAAGGAGTA 59.178 50.000 0.00 0.00 37.60 2.59
579 2070 6.030082 AGGGAGTATATAGTATTGGGGTTGG 58.970 44.000 0.00 0.00 0.00 3.77
644 2135 6.464222 TCCGTCTCAAAATAAGTGACTCAAT 58.536 36.000 0.00 0.00 0.00 2.57
661 2152 3.818180 TCTGTTATACTCCCTCCGTCTC 58.182 50.000 0.00 0.00 0.00 3.36
669 2160 4.331992 GCGGTTTTCTTCTGTTATACTCCC 59.668 45.833 0.00 0.00 0.00 4.30
707 2199 5.447757 TCGGTTTTCTTCTTCCCCTAAAAA 58.552 37.500 0.00 0.00 0.00 1.94
780 2273 2.567169 TCTGACATGGGTGTAGGTTCTG 59.433 50.000 0.00 0.00 39.09 3.02
793 2479 4.049869 CTCGAGATGGTGAATCTGACATG 58.950 47.826 6.58 0.00 46.12 3.21
941 3480 2.408612 GCTTTGCGTCTCGTATAATCGC 60.409 50.000 0.00 0.00 45.70 4.58
942 3481 2.153247 GGCTTTGCGTCTCGTATAATCG 59.847 50.000 0.00 0.00 0.00 3.34
943 3482 3.182572 CAGGCTTTGCGTCTCGTATAATC 59.817 47.826 0.00 0.00 0.00 1.75
1992 4531 3.265479 CCTCATCCTGTTCCTCCTTTTCT 59.735 47.826 0.00 0.00 0.00 2.52
2294 4834 2.030571 GCATTGCCTGGGATGATTCCA 61.031 52.381 0.00 0.00 44.60 3.53
2454 4994 2.693074 GTTTTTGGCAGTCTTCCCTTGA 59.307 45.455 0.00 0.00 0.00 3.02
2680 5227 0.606673 GAGACCCTGTTGTGCCCTTC 60.607 60.000 0.00 0.00 0.00 3.46
2882 5429 1.410153 GCAAATAACCCTGCCTCCATG 59.590 52.381 0.00 0.00 32.18 3.66
3422 5989 7.476667 ACGAAGTCAGAAGTTGATACAGATAG 58.523 38.462 0.00 0.00 29.74 2.08
3494 6061 7.045126 AGACTGACTAACATGAACTATAGGC 57.955 40.000 0.00 0.00 0.00 3.93
3500 6067 5.984695 TGCTAGACTGACTAACATGAACT 57.015 39.130 0.00 0.00 0.00 3.01
3510 6077 3.118956 GCAGGTAACATGCTAGACTGACT 60.119 47.826 10.43 0.00 40.59 3.41
3511 6078 3.190874 GCAGGTAACATGCTAGACTGAC 58.809 50.000 10.43 1.61 40.59 3.51
3529 6107 5.458041 TCCAAAATCTTTGGAGAAAGCAG 57.542 39.130 15.29 0.00 43.17 4.24
3552 6130 0.578683 CACGTGTGACACTTGCAGAG 59.421 55.000 14.42 0.00 31.34 3.35
3614 6193 1.205966 TTACCATCCCCGGGTAACTG 58.794 55.000 21.85 10.65 43.94 3.16
3623 6202 4.913784 TCACAACTAAAGTTACCATCCCC 58.086 43.478 0.00 0.00 36.32 4.81
3671 6250 5.590104 ACACAAAAACAACTGAAACTTGC 57.410 34.783 0.00 0.00 0.00 4.01
3703 6282 5.559148 ACAACTAAAATTGCCATCCCAAA 57.441 34.783 0.00 0.00 32.47 3.28
3705 6284 6.672266 TTTACAACTAAAATTGCCATCCCA 57.328 33.333 0.00 0.00 32.47 4.37
3706 6285 7.971183 TTTTTACAACTAAAATTGCCATCCC 57.029 32.000 0.00 0.00 32.90 3.85
3715 6294 7.731054 TGCCCTGACATTTTTACAACTAAAAT 58.269 30.769 0.00 0.00 36.03 1.82
3742 6321 2.096819 ACAAGTGTGGCACAAAGTAACG 59.903 45.455 23.90 9.15 44.16 3.18
3770 6349 7.090173 AGTTGTAAAAATCATCCCAAATGACG 58.910 34.615 0.00 0.00 0.00 4.35
3771 6350 9.921637 TTAGTTGTAAAAATCATCCCAAATGAC 57.078 29.630 0.00 0.00 0.00 3.06
3859 6438 3.116096 TCTAGTGGCTGGGAGTTACAT 57.884 47.619 0.00 0.00 0.00 2.29
3868 6447 1.892209 ACCGTTTTTCTAGTGGCTGG 58.108 50.000 0.00 0.00 0.00 4.85
3884 6463 4.636435 AACTGGGGGCACGAACCG 62.636 66.667 0.00 0.00 0.00 4.44
3885 6464 0.537828 TAAAACTGGGGGCACGAACC 60.538 55.000 0.00 0.00 0.00 3.62
3886 6465 0.594602 GTAAAACTGGGGGCACGAAC 59.405 55.000 0.00 0.00 0.00 3.95
3887 6466 0.475044 AGTAAAACTGGGGGCACGAA 59.525 50.000 0.00 0.00 0.00 3.85
3888 6467 1.350071 TAGTAAAACTGGGGGCACGA 58.650 50.000 0.00 0.00 0.00 4.35
3889 6468 2.081462 CTTAGTAAAACTGGGGGCACG 58.919 52.381 0.00 0.00 0.00 5.34
3890 6469 3.079578 GACTTAGTAAAACTGGGGGCAC 58.920 50.000 0.00 0.00 0.00 5.01
3891 6470 2.712087 TGACTTAGTAAAACTGGGGGCA 59.288 45.455 0.00 0.00 0.00 5.36
3892 6471 3.344515 CTGACTTAGTAAAACTGGGGGC 58.655 50.000 0.00 0.00 0.00 5.80
3893 6472 3.009143 AGCTGACTTAGTAAAACTGGGGG 59.991 47.826 0.00 0.00 0.00 5.40
3894 6473 4.287766 AGCTGACTTAGTAAAACTGGGG 57.712 45.455 0.00 0.00 0.00 4.96
3895 6474 5.063880 ACAAGCTGACTTAGTAAAACTGGG 58.936 41.667 0.00 0.00 33.74 4.45
3896 6475 6.704493 TGTACAAGCTGACTTAGTAAAACTGG 59.296 38.462 0.00 0.00 33.74 4.00
3897 6476 7.709269 TGTACAAGCTGACTTAGTAAAACTG 57.291 36.000 0.00 0.00 33.74 3.16
3898 6477 8.368668 AGATGTACAAGCTGACTTAGTAAAACT 58.631 33.333 0.00 0.00 33.74 2.66
3899 6478 8.535690 AGATGTACAAGCTGACTTAGTAAAAC 57.464 34.615 0.00 0.00 33.74 2.43
3900 6479 9.635520 GTAGATGTACAAGCTGACTTAGTAAAA 57.364 33.333 0.00 0.00 33.74 1.52
3901 6480 8.799367 TGTAGATGTACAAGCTGACTTAGTAAA 58.201 33.333 0.00 0.00 36.15 2.01
3902 6481 8.344446 TGTAGATGTACAAGCTGACTTAGTAA 57.656 34.615 0.00 0.00 36.15 2.24
3903 6482 7.933215 TGTAGATGTACAAGCTGACTTAGTA 57.067 36.000 0.00 0.00 36.15 1.82
3904 6483 6.835819 TGTAGATGTACAAGCTGACTTAGT 57.164 37.500 0.00 0.00 36.15 2.24
3905 6484 7.484140 TGATGTAGATGTACAAGCTGACTTAG 58.516 38.462 6.82 0.00 42.54 2.18
3906 6485 7.404671 TGATGTAGATGTACAAGCTGACTTA 57.595 36.000 6.82 0.00 42.54 2.24
3907 6486 6.286240 TGATGTAGATGTACAAGCTGACTT 57.714 37.500 6.82 0.00 42.54 3.01
3908 6487 5.921962 TGATGTAGATGTACAAGCTGACT 57.078 39.130 6.82 0.00 42.54 3.41
3909 6488 6.102663 AGTTGATGTAGATGTACAAGCTGAC 58.897 40.000 6.82 6.17 42.54 3.51
3910 6489 6.286240 AGTTGATGTAGATGTACAAGCTGA 57.714 37.500 6.82 0.00 42.54 4.26
3911 6490 9.920133 ATATAGTTGATGTAGATGTACAAGCTG 57.080 33.333 6.82 0.00 42.54 4.24
3912 6491 9.920133 CATATAGTTGATGTAGATGTACAAGCT 57.080 33.333 6.82 3.07 42.54 3.74
3913 6492 9.698309 ACATATAGTTGATGTAGATGTACAAGC 57.302 33.333 6.82 3.37 42.54 4.01
3915 6494 9.981114 CCACATATAGTTGATGTAGATGTACAA 57.019 33.333 6.82 0.00 42.54 2.41
3916 6495 9.362151 TCCACATATAGTTGATGTAGATGTACA 57.638 33.333 5.03 5.03 43.43 2.90
3919 6498 9.093458 TGATCCACATATAGTTGATGTAGATGT 57.907 33.333 2.16 0.00 36.28 3.06
3922 6501 9.093458 ACATGATCCACATATAGTTGATGTAGA 57.907 33.333 0.00 0.00 35.75 2.59
3923 6502 9.716531 AACATGATCCACATATAGTTGATGTAG 57.283 33.333 0.00 0.00 35.75 2.74
3925 6504 8.985315 AAACATGATCCACATATAGTTGATGT 57.015 30.769 0.00 0.00 38.05 3.06
3926 6505 9.059260 TGAAACATGATCCACATATAGTTGATG 57.941 33.333 0.00 0.00 37.46 3.07
3927 6506 9.281371 CTGAAACATGATCCACATATAGTTGAT 57.719 33.333 0.00 0.00 37.46 2.57
3928 6507 8.267183 ACTGAAACATGATCCACATATAGTTGA 58.733 33.333 0.00 0.00 37.46 3.18
3929 6508 8.442632 ACTGAAACATGATCCACATATAGTTG 57.557 34.615 0.00 0.00 37.46 3.16
3930 6509 9.466497 AAACTGAAACATGATCCACATATAGTT 57.534 29.630 0.00 0.00 37.46 2.24
3931 6510 9.466497 AAAACTGAAACATGATCCACATATAGT 57.534 29.630 0.00 0.00 37.46 2.12
3934 6513 9.466497 AGTAAAACTGAAACATGATCCACATAT 57.534 29.630 0.00 0.00 37.46 1.78
3935 6514 8.862325 AGTAAAACTGAAACATGATCCACATA 57.138 30.769 0.00 0.00 37.46 2.29
3936 6515 7.765695 AGTAAAACTGAAACATGATCCACAT 57.234 32.000 0.00 0.00 40.17 3.21
3937 6516 8.684386 TTAGTAAAACTGAAACATGATCCACA 57.316 30.769 0.00 0.00 0.00 4.17
3938 6517 8.784043 ACTTAGTAAAACTGAAACATGATCCAC 58.216 33.333 0.00 0.00 0.00 4.02
3939 6518 8.918202 ACTTAGTAAAACTGAAACATGATCCA 57.082 30.769 0.00 0.00 0.00 3.41
3940 6519 8.999431 TGACTTAGTAAAACTGAAACATGATCC 58.001 33.333 0.00 0.00 0.00 3.36
3942 6521 8.507249 GCTGACTTAGTAAAACTGAAACATGAT 58.493 33.333 0.00 0.00 0.00 2.45
3943 6522 7.715249 AGCTGACTTAGTAAAACTGAAACATGA 59.285 33.333 0.00 0.00 0.00 3.07
3944 6523 7.865707 AGCTGACTTAGTAAAACTGAAACATG 58.134 34.615 0.00 0.00 0.00 3.21
3945 6524 8.345565 CAAGCTGACTTAGTAAAACTGAAACAT 58.654 33.333 0.00 0.00 33.74 2.71
3946 6525 7.335924 ACAAGCTGACTTAGTAAAACTGAAACA 59.664 33.333 0.00 0.00 33.74 2.83
3947 6526 7.694886 ACAAGCTGACTTAGTAAAACTGAAAC 58.305 34.615 0.00 0.00 33.74 2.78
3948 6527 7.859325 ACAAGCTGACTTAGTAAAACTGAAA 57.141 32.000 0.00 0.00 33.74 2.69
3949 6528 7.982919 TGTACAAGCTGACTTAGTAAAACTGAA 59.017 33.333 0.00 0.00 33.74 3.02
3950 6529 7.494211 TGTACAAGCTGACTTAGTAAAACTGA 58.506 34.615 0.00 0.00 33.74 3.41
3951 6530 7.709269 TGTACAAGCTGACTTAGTAAAACTG 57.291 36.000 0.00 0.00 33.74 3.16
3952 6531 8.148351 TGATGTACAAGCTGACTTAGTAAAACT 58.852 33.333 0.00 0.00 33.74 2.66
3953 6532 8.306680 TGATGTACAAGCTGACTTAGTAAAAC 57.693 34.615 0.00 0.00 33.74 2.43
3954 6533 8.770828 GTTGATGTACAAGCTGACTTAGTAAAA 58.229 33.333 0.00 0.00 39.30 1.52
3955 6534 8.148351 AGTTGATGTACAAGCTGACTTAGTAAA 58.852 33.333 0.00 0.00 39.30 2.01
3956 6535 7.667557 AGTTGATGTACAAGCTGACTTAGTAA 58.332 34.615 0.00 0.00 39.30 2.24
3957 6536 7.228314 AGTTGATGTACAAGCTGACTTAGTA 57.772 36.000 0.00 0.00 39.30 1.82
3958 6537 6.102897 AGTTGATGTACAAGCTGACTTAGT 57.897 37.500 0.00 0.00 39.30 2.24
3959 6538 7.090808 TGTAGTTGATGTACAAGCTGACTTAG 58.909 38.462 0.00 0.00 39.30 2.18
3960 6539 6.988522 TGTAGTTGATGTACAAGCTGACTTA 58.011 36.000 0.00 0.00 39.30 2.24
3961 6540 5.853936 TGTAGTTGATGTACAAGCTGACTT 58.146 37.500 0.00 0.00 39.30 3.01
3962 6541 5.468540 TGTAGTTGATGTACAAGCTGACT 57.531 39.130 0.00 6.76 39.30 3.41
3963 6542 5.639506 ACATGTAGTTGATGTACAAGCTGAC 59.360 40.000 0.00 0.00 39.30 3.51
3964 6543 5.639082 CACATGTAGTTGATGTACAAGCTGA 59.361 40.000 0.00 0.00 39.30 4.26
3965 6544 5.163824 CCACATGTAGTTGATGTACAAGCTG 60.164 44.000 0.00 0.00 39.30 4.24
3966 6545 4.937620 CCACATGTAGTTGATGTACAAGCT 59.062 41.667 0.00 0.00 39.30 3.74
3967 6546 4.935205 TCCACATGTAGTTGATGTACAAGC 59.065 41.667 0.00 0.00 39.30 4.01
3968 6547 6.818142 TGATCCACATGTAGTTGATGTACAAG 59.182 38.462 0.00 0.00 39.30 3.16
3969 6548 6.706295 TGATCCACATGTAGTTGATGTACAA 58.294 36.000 0.00 0.00 33.13 2.41
3970 6549 6.293004 TGATCCACATGTAGTTGATGTACA 57.707 37.500 0.00 0.00 33.13 2.90
3984 6563 4.828939 ACACAAGTGAAACATGATCCACAT 59.171 37.500 7.28 0.00 37.85 3.21
3985 6564 4.206375 ACACAAGTGAAACATGATCCACA 58.794 39.130 7.28 0.00 37.85 4.17
3986 6565 4.611355 CGACACAAGTGAAACATGATCCAC 60.611 45.833 7.28 3.89 37.85 4.02
3987 6566 3.498018 CGACACAAGTGAAACATGATCCA 59.502 43.478 7.28 0.00 37.85 3.41
3988 6567 3.120199 CCGACACAAGTGAAACATGATCC 60.120 47.826 7.28 0.00 37.85 3.36
3989 6568 3.745975 TCCGACACAAGTGAAACATGATC 59.254 43.478 7.28 0.00 37.85 2.92
3990 6569 3.738982 TCCGACACAAGTGAAACATGAT 58.261 40.909 7.28 0.00 37.85 2.45
3991 6570 3.186702 TCCGACACAAGTGAAACATGA 57.813 42.857 7.28 0.00 37.85 3.07
3992 6571 3.559655 TCTTCCGACACAAGTGAAACATG 59.440 43.478 7.28 0.00 42.14 3.21
3993 6572 3.804036 TCTTCCGACACAAGTGAAACAT 58.196 40.909 7.28 0.00 41.43 2.71
3994 6573 3.254470 TCTTCCGACACAAGTGAAACA 57.746 42.857 7.28 0.00 41.43 2.83
3995 6574 4.094442 AGTTTCTTCCGACACAAGTGAAAC 59.906 41.667 7.28 0.00 40.85 2.78
3996 6575 4.258543 AGTTTCTTCCGACACAAGTGAAA 58.741 39.130 7.28 0.00 0.00 2.69
3997 6576 3.869065 AGTTTCTTCCGACACAAGTGAA 58.131 40.909 7.28 0.00 0.00 3.18
3998 6577 3.536956 AGTTTCTTCCGACACAAGTGA 57.463 42.857 7.28 0.00 0.00 3.41
3999 6578 5.047847 TCTTAGTTTCTTCCGACACAAGTG 58.952 41.667 0.00 0.00 0.00 3.16
4000 6579 5.272283 TCTTAGTTTCTTCCGACACAAGT 57.728 39.130 0.00 0.00 0.00 3.16
4001 6580 6.419771 GTTTCTTAGTTTCTTCCGACACAAG 58.580 40.000 0.00 0.00 0.00 3.16
4002 6581 5.005971 CGTTTCTTAGTTTCTTCCGACACAA 59.994 40.000 0.00 0.00 0.00 3.33
4003 6582 4.505191 CGTTTCTTAGTTTCTTCCGACACA 59.495 41.667 0.00 0.00 0.00 3.72
4004 6583 4.741676 TCGTTTCTTAGTTTCTTCCGACAC 59.258 41.667 0.00 0.00 0.00 3.67
4005 6584 4.935702 TCGTTTCTTAGTTTCTTCCGACA 58.064 39.130 0.00 0.00 0.00 4.35
4006 6585 5.612059 GCTTCGTTTCTTAGTTTCTTCCGAC 60.612 44.000 0.00 0.00 0.00 4.79
4007 6586 4.446719 GCTTCGTTTCTTAGTTTCTTCCGA 59.553 41.667 0.00 0.00 0.00 4.55
4008 6587 4.210537 TGCTTCGTTTCTTAGTTTCTTCCG 59.789 41.667 0.00 0.00 0.00 4.30
4009 6588 5.668558 TGCTTCGTTTCTTAGTTTCTTCC 57.331 39.130 0.00 0.00 0.00 3.46
4010 6589 6.792726 GTCATGCTTCGTTTCTTAGTTTCTTC 59.207 38.462 0.00 0.00 0.00 2.87
4011 6590 6.293462 GGTCATGCTTCGTTTCTTAGTTTCTT 60.293 38.462 0.00 0.00 0.00 2.52
4012 6591 5.179555 GGTCATGCTTCGTTTCTTAGTTTCT 59.820 40.000 0.00 0.00 0.00 2.52
4013 6592 5.049680 TGGTCATGCTTCGTTTCTTAGTTTC 60.050 40.000 0.00 0.00 0.00 2.78
4014 6593 4.819630 TGGTCATGCTTCGTTTCTTAGTTT 59.180 37.500 0.00 0.00 0.00 2.66
4015 6594 4.385825 TGGTCATGCTTCGTTTCTTAGTT 58.614 39.130 0.00 0.00 0.00 2.24
4016 6595 3.997021 CTGGTCATGCTTCGTTTCTTAGT 59.003 43.478 0.00 0.00 0.00 2.24
4017 6596 4.245660 TCTGGTCATGCTTCGTTTCTTAG 58.754 43.478 0.00 0.00 0.00 2.18
4018 6597 4.265904 TCTGGTCATGCTTCGTTTCTTA 57.734 40.909 0.00 0.00 0.00 2.10
4019 6598 3.126001 TCTGGTCATGCTTCGTTTCTT 57.874 42.857 0.00 0.00 0.00 2.52
4020 6599 2.808543 GTTCTGGTCATGCTTCGTTTCT 59.191 45.455 0.00 0.00 0.00 2.52
4021 6600 2.548057 TGTTCTGGTCATGCTTCGTTTC 59.452 45.455 0.00 0.00 0.00 2.78
4022 6601 2.290641 GTGTTCTGGTCATGCTTCGTTT 59.709 45.455 0.00 0.00 0.00 3.60
4023 6602 1.873591 GTGTTCTGGTCATGCTTCGTT 59.126 47.619 0.00 0.00 0.00 3.85
4024 6603 1.070758 AGTGTTCTGGTCATGCTTCGT 59.929 47.619 0.00 0.00 0.00 3.85
4025 6604 1.800805 AGTGTTCTGGTCATGCTTCG 58.199 50.000 0.00 0.00 0.00 3.79
4026 6605 5.886960 AATTAGTGTTCTGGTCATGCTTC 57.113 39.130 0.00 0.00 0.00 3.86
4027 6606 7.759489 TTTAATTAGTGTTCTGGTCATGCTT 57.241 32.000 0.00 0.00 0.00 3.91
4028 6607 7.067494 GGATTTAATTAGTGTTCTGGTCATGCT 59.933 37.037 0.00 0.00 0.00 3.79
4029 6608 7.196331 GGATTTAATTAGTGTTCTGGTCATGC 58.804 38.462 0.00 0.00 0.00 4.06
4030 6609 7.201821 GGGGATTTAATTAGTGTTCTGGTCATG 60.202 40.741 0.00 0.00 0.00 3.07
4031 6610 6.833933 GGGGATTTAATTAGTGTTCTGGTCAT 59.166 38.462 0.00 0.00 0.00 3.06
4032 6611 6.184789 GGGGATTTAATTAGTGTTCTGGTCA 58.815 40.000 0.00 0.00 0.00 4.02
4033 6612 6.184789 TGGGGATTTAATTAGTGTTCTGGTC 58.815 40.000 0.00 0.00 0.00 4.02
4034 6613 6.011981 TCTGGGGATTTAATTAGTGTTCTGGT 60.012 38.462 0.00 0.00 0.00 4.00
4035 6614 6.423182 TCTGGGGATTTAATTAGTGTTCTGG 58.577 40.000 0.00 0.00 0.00 3.86
4036 6615 7.938140 TTCTGGGGATTTAATTAGTGTTCTG 57.062 36.000 0.00 0.00 0.00 3.02
4037 6616 8.803235 GTTTTCTGGGGATTTAATTAGTGTTCT 58.197 33.333 0.00 0.00 0.00 3.01
4038 6617 8.803235 AGTTTTCTGGGGATTTAATTAGTGTTC 58.197 33.333 0.00 0.00 0.00 3.18
4039 6618 8.721133 AGTTTTCTGGGGATTTAATTAGTGTT 57.279 30.769 0.00 0.00 0.00 3.32
4040 6619 9.816787 TTAGTTTTCTGGGGATTTAATTAGTGT 57.183 29.630 0.00 0.00 0.00 3.55
4046 6625 9.772973 GTTGTTTTAGTTTTCTGGGGATTTAAT 57.227 29.630 0.00 0.00 0.00 1.40
4047 6626 7.921745 CGTTGTTTTAGTTTTCTGGGGATTTAA 59.078 33.333 0.00 0.00 0.00 1.52
4048 6627 7.427214 CGTTGTTTTAGTTTTCTGGGGATTTA 58.573 34.615 0.00 0.00 0.00 1.40
4049 6628 6.277605 CGTTGTTTTAGTTTTCTGGGGATTT 58.722 36.000 0.00 0.00 0.00 2.17
4050 6629 5.737922 GCGTTGTTTTAGTTTTCTGGGGATT 60.738 40.000 0.00 0.00 0.00 3.01
4051 6630 4.261867 GCGTTGTTTTAGTTTTCTGGGGAT 60.262 41.667 0.00 0.00 0.00 3.85
4052 6631 3.067040 GCGTTGTTTTAGTTTTCTGGGGA 59.933 43.478 0.00 0.00 0.00 4.81
4053 6632 3.067601 AGCGTTGTTTTAGTTTTCTGGGG 59.932 43.478 0.00 0.00 0.00 4.96
4054 6633 4.301637 AGCGTTGTTTTAGTTTTCTGGG 57.698 40.909 0.00 0.00 0.00 4.45
4055 6634 4.909880 GCTAGCGTTGTTTTAGTTTTCTGG 59.090 41.667 0.00 0.00 0.00 3.86
4056 6635 4.607235 CGCTAGCGTTGTTTTAGTTTTCTG 59.393 41.667 28.66 0.00 34.35 3.02
4057 6636 4.769215 CGCTAGCGTTGTTTTAGTTTTCT 58.231 39.130 28.66 0.00 34.35 2.52
4086 6665 3.245315 CGTTAGCGACGCCCGAAG 61.245 66.667 17.79 1.13 45.86 3.79
4106 6685 3.231260 CTAGACACGACGCACGCG 61.231 66.667 10.36 10.36 46.94 6.01
4107 6686 2.874780 CCTAGACACGACGCACGC 60.875 66.667 0.00 0.00 46.94 5.34
4109 6688 1.443872 CACCCTAGACACGACGCAC 60.444 63.158 0.00 0.00 0.00 5.34
4110 6689 2.959372 CACCCTAGACACGACGCA 59.041 61.111 0.00 0.00 0.00 5.24
4111 6690 2.488087 AAGCACCCTAGACACGACGC 62.488 60.000 0.00 0.00 0.00 5.19
4112 6691 0.732880 CAAGCACCCTAGACACGACG 60.733 60.000 0.00 0.00 0.00 5.12
4113 6692 0.389948 CCAAGCACCCTAGACACGAC 60.390 60.000 0.00 0.00 0.00 4.34
4114 6693 0.830444 ACCAAGCACCCTAGACACGA 60.830 55.000 0.00 0.00 0.00 4.35
4115 6694 0.034896 AACCAAGCACCCTAGACACG 59.965 55.000 0.00 0.00 0.00 4.49
4116 6695 2.614734 GGTAACCAAGCACCCTAGACAC 60.615 54.545 0.00 0.00 0.00 3.67
4117 6696 1.626825 GGTAACCAAGCACCCTAGACA 59.373 52.381 0.00 0.00 0.00 3.41
4118 6697 1.907255 AGGTAACCAAGCACCCTAGAC 59.093 52.381 0.00 0.00 35.25 2.59
4119 6698 2.185387 GAGGTAACCAAGCACCCTAGA 58.815 52.381 0.00 0.00 35.25 2.43
4120 6699 1.134788 CGAGGTAACCAAGCACCCTAG 60.135 57.143 0.00 0.00 35.25 3.02
4121 6700 0.899720 CGAGGTAACCAAGCACCCTA 59.100 55.000 0.00 0.00 35.25 3.53
4122 6701 0.834687 TCGAGGTAACCAAGCACCCT 60.835 55.000 0.00 0.00 35.25 4.34
4123 6702 0.252197 ATCGAGGTAACCAAGCACCC 59.748 55.000 0.00 0.00 35.25 4.61
4124 6703 2.109425 AATCGAGGTAACCAAGCACC 57.891 50.000 0.00 0.00 34.86 5.01
4125 6704 3.195661 CCTAATCGAGGTAACCAAGCAC 58.804 50.000 0.00 0.00 40.98 4.40
4126 6705 3.536956 CCTAATCGAGGTAACCAAGCA 57.463 47.619 0.00 0.00 40.98 3.91
4137 6716 3.251245 AGCACGTGATCTACCTAATCGAG 59.749 47.826 22.23 0.00 0.00 4.04
4138 6717 3.211865 AGCACGTGATCTACCTAATCGA 58.788 45.455 22.23 0.00 0.00 3.59
4139 6718 3.627732 AGCACGTGATCTACCTAATCG 57.372 47.619 22.23 0.00 0.00 3.34
4140 6719 5.335035 GGACTAGCACGTGATCTACCTAATC 60.335 48.000 22.23 8.98 0.00 1.75
4141 6720 4.519730 GGACTAGCACGTGATCTACCTAAT 59.480 45.833 22.23 0.00 0.00 1.73
4142 6721 3.881688 GGACTAGCACGTGATCTACCTAA 59.118 47.826 22.23 0.00 0.00 2.69
4143 6722 3.118149 TGGACTAGCACGTGATCTACCTA 60.118 47.826 22.23 8.89 0.00 3.08
4144 6723 2.299521 GGACTAGCACGTGATCTACCT 58.700 52.381 22.23 8.10 0.00 3.08
4145 6724 2.022195 TGGACTAGCACGTGATCTACC 58.978 52.381 22.23 16.79 0.00 3.18
4146 6725 3.992260 ATGGACTAGCACGTGATCTAC 57.008 47.619 22.23 7.60 0.00 2.59
4147 6726 5.183331 GGAATATGGACTAGCACGTGATCTA 59.817 44.000 22.23 11.15 0.00 1.98
4148 6727 4.021894 GGAATATGGACTAGCACGTGATCT 60.022 45.833 22.23 10.51 0.00 2.75
4149 6728 4.238514 GGAATATGGACTAGCACGTGATC 58.761 47.826 22.23 10.22 0.00 2.92
4150 6729 3.006967 GGGAATATGGACTAGCACGTGAT 59.993 47.826 22.23 17.40 0.00 3.06
4151 6730 2.364324 GGGAATATGGACTAGCACGTGA 59.636 50.000 22.23 0.00 0.00 4.35
4152 6731 2.548067 GGGGAATATGGACTAGCACGTG 60.548 54.545 12.28 12.28 0.00 4.49
4153 6732 1.692519 GGGGAATATGGACTAGCACGT 59.307 52.381 0.00 0.00 0.00 4.49
4154 6733 1.691976 TGGGGAATATGGACTAGCACG 59.308 52.381 0.00 0.00 0.00 5.34
4155 6734 4.373156 AATGGGGAATATGGACTAGCAC 57.627 45.455 0.00 0.00 0.00 4.40
4156 6735 4.202567 GGAAATGGGGAATATGGACTAGCA 60.203 45.833 0.00 0.00 0.00 3.49
4157 6736 4.043435 AGGAAATGGGGAATATGGACTAGC 59.957 45.833 0.00 0.00 0.00 3.42
4158 6737 5.850046 AGGAAATGGGGAATATGGACTAG 57.150 43.478 0.00 0.00 0.00 2.57
4159 6738 7.523415 GTTAAGGAAATGGGGAATATGGACTA 58.477 38.462 0.00 0.00 0.00 2.59
4160 6739 6.373759 GTTAAGGAAATGGGGAATATGGACT 58.626 40.000 0.00 0.00 0.00 3.85
4161 6740 5.240844 CGTTAAGGAAATGGGGAATATGGAC 59.759 44.000 0.00 0.00 0.00 4.02
4162 6741 5.132985 TCGTTAAGGAAATGGGGAATATGGA 59.867 40.000 0.00 0.00 0.00 3.41
4163 6742 5.240844 GTCGTTAAGGAAATGGGGAATATGG 59.759 44.000 0.00 0.00 0.00 2.74
4164 6743 5.825679 TGTCGTTAAGGAAATGGGGAATATG 59.174 40.000 0.00 0.00 0.00 1.78
4165 6744 6.008696 TGTCGTTAAGGAAATGGGGAATAT 57.991 37.500 0.00 0.00 0.00 1.28
4166 6745 5.438698 TGTCGTTAAGGAAATGGGGAATA 57.561 39.130 0.00 0.00 0.00 1.75
4167 6746 4.310022 TGTCGTTAAGGAAATGGGGAAT 57.690 40.909 0.00 0.00 0.00 3.01
4168 6747 3.791953 TGTCGTTAAGGAAATGGGGAA 57.208 42.857 0.00 0.00 0.00 3.97
4169 6748 3.791953 TTGTCGTTAAGGAAATGGGGA 57.208 42.857 0.00 0.00 0.00 4.81
4170 6749 4.857509 TTTTGTCGTTAAGGAAATGGGG 57.142 40.909 0.00 0.00 0.00 4.96
4171 6750 8.085909 ACTAAATTTTGTCGTTAAGGAAATGGG 58.914 33.333 0.00 0.00 0.00 4.00
4182 6761 8.166706 CGCATTCTAGTACTAAATTTTGTCGTT 58.833 33.333 8.57 0.00 0.00 3.85
4183 6762 7.543172 TCGCATTCTAGTACTAAATTTTGTCGT 59.457 33.333 8.57 1.05 0.00 4.34
4184 6763 7.891782 TCGCATTCTAGTACTAAATTTTGTCG 58.108 34.615 8.57 3.96 0.00 4.35
4185 6764 7.846592 GCTCGCATTCTAGTACTAAATTTTGTC 59.153 37.037 8.57 2.16 0.00 3.18
4186 6765 7.464178 CGCTCGCATTCTAGTACTAAATTTTGT 60.464 37.037 10.11 10.11 0.00 2.83
4187 6766 6.841286 CGCTCGCATTCTAGTACTAAATTTTG 59.159 38.462 3.76 0.00 0.00 2.44
4188 6767 6.509677 GCGCTCGCATTCTAGTACTAAATTTT 60.510 38.462 9.59 0.00 41.49 1.82
4189 6768 5.050972 GCGCTCGCATTCTAGTACTAAATTT 60.051 40.000 9.59 0.00 41.49 1.82
4190 6769 4.444720 GCGCTCGCATTCTAGTACTAAATT 59.555 41.667 9.59 0.00 41.49 1.82
4191 6770 3.982058 GCGCTCGCATTCTAGTACTAAAT 59.018 43.478 9.59 4.62 41.49 1.40
4192 6771 3.066342 AGCGCTCGCATTCTAGTACTAAA 59.934 43.478 16.86 2.50 44.88 1.85
4193 6772 2.617308 AGCGCTCGCATTCTAGTACTAA 59.383 45.455 16.86 0.00 44.88 2.24
4194 6773 2.031944 CAGCGCTCGCATTCTAGTACTA 60.032 50.000 7.13 1.89 44.88 1.82
4195 6774 1.025812 AGCGCTCGCATTCTAGTACT 58.974 50.000 16.86 0.00 44.88 2.73
4196 6775 1.124462 CAGCGCTCGCATTCTAGTAC 58.876 55.000 7.13 0.00 44.88 2.73
4197 6776 0.738975 ACAGCGCTCGCATTCTAGTA 59.261 50.000 7.13 0.00 44.88 1.82
4198 6777 0.108615 AACAGCGCTCGCATTCTAGT 60.109 50.000 7.13 0.00 44.88 2.57
4199 6778 0.574454 GAACAGCGCTCGCATTCTAG 59.426 55.000 7.13 0.00 44.88 2.43
4200 6779 0.806102 GGAACAGCGCTCGCATTCTA 60.806 55.000 7.13 0.00 44.88 2.10
4201 6780 2.103042 GGAACAGCGCTCGCATTCT 61.103 57.895 7.13 5.05 44.88 2.40
4202 6781 2.401195 GGAACAGCGCTCGCATTC 59.599 61.111 7.13 17.17 44.88 2.67
4203 6782 3.127533 GGGAACAGCGCTCGCATT 61.128 61.111 7.13 9.96 44.88 3.56
4204 6783 3.612247 AAGGGAACAGCGCTCGCAT 62.612 57.895 7.13 0.00 44.88 4.73
4205 6784 3.825160 AAAGGGAACAGCGCTCGCA 62.825 57.895 7.13 0.00 44.88 5.10
4206 6785 3.028366 GAAAGGGAACAGCGCTCGC 62.028 63.158 7.13 5.35 39.11 5.03
4207 6786 2.391389 GGAAAGGGAACAGCGCTCG 61.391 63.158 7.13 6.07 39.11 5.03
4208 6787 0.889186 TTGGAAAGGGAACAGCGCTC 60.889 55.000 7.13 0.00 39.11 5.03
4209 6788 0.890996 CTTGGAAAGGGAACAGCGCT 60.891 55.000 2.64 2.64 41.27 5.92
4210 6789 1.581447 CTTGGAAAGGGAACAGCGC 59.419 57.895 0.00 0.00 41.27 5.92
4219 6798 1.014564 GCGAGACCGACTTGGAAAGG 61.015 60.000 0.00 0.00 41.88 3.11
4220 6799 1.344942 CGCGAGACCGACTTGGAAAG 61.345 60.000 0.00 0.00 42.74 2.62
4221 6800 1.372499 CGCGAGACCGACTTGGAAA 60.372 57.895 0.00 0.00 42.00 3.13
4222 6801 1.798234 TTCGCGAGACCGACTTGGAA 61.798 55.000 9.59 0.00 41.84 3.53
4223 6802 2.263021 TTCGCGAGACCGACTTGGA 61.263 57.895 9.59 0.00 41.84 3.53
4224 6803 2.087009 GTTCGCGAGACCGACTTGG 61.087 63.158 9.59 0.00 41.84 3.61
4225 6804 3.449042 GTTCGCGAGACCGACTTG 58.551 61.111 9.59 0.00 41.84 3.16
4231 6810 4.736896 AAGCCCGTTCGCGAGACC 62.737 66.667 9.59 0.17 44.71 3.85
4232 6811 3.479269 CAAGCCCGTTCGCGAGAC 61.479 66.667 9.59 9.99 44.71 3.36
4233 6812 4.735132 CCAAGCCCGTTCGCGAGA 62.735 66.667 9.59 0.00 44.71 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.