Multiple sequence alignment - TraesCS2B01G216800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G216800 chr2B 100.000 3908 0 0 1 3908 202922502 202918595 0.000000e+00 7217.0
1 TraesCS2B01G216800 chr2B 93.796 548 34 0 1 548 724751940 724752487 0.000000e+00 824.0
2 TraesCS2B01G216800 chr2D 89.834 1505 70 45 611 2103 145364386 145362953 0.000000e+00 1855.0
3 TraesCS2B01G216800 chr2D 90.409 1199 48 29 2143 3287 145362954 145361769 0.000000e+00 1515.0
4 TraesCS2B01G216800 chr2D 85.600 250 12 4 3651 3900 145361720 145361495 1.400000e-59 241.0
5 TraesCS2B01G216800 chr2D 91.875 160 13 0 3494 3653 449571309 449571150 1.410000e-54 224.0
6 TraesCS2B01G216800 chr2D 95.556 135 6 0 3289 3423 645613051 645613185 2.360000e-52 217.0
7 TraesCS2B01G216800 chr2D 93.103 145 8 2 3279 3423 592468118 592467976 1.100000e-50 211.0
8 TraesCS2B01G216800 chr2D 81.858 226 26 11 638 854 145374078 145373859 4.010000e-40 176.0
9 TraesCS2B01G216800 chr2A 88.592 1534 101 38 621 2103 156666422 156667932 0.000000e+00 1796.0
10 TraesCS2B01G216800 chr2A 88.767 1371 75 30 2119 3435 156667914 156669259 0.000000e+00 1605.0
11 TraesCS2B01G216800 chr2A 96.571 175 3 2 3735 3908 156669286 156669458 1.780000e-73 287.0
12 TraesCS2B01G216800 chr4B 94.862 545 25 3 1 544 29628147 29627605 0.000000e+00 848.0
13 TraesCS2B01G216800 chr4B 94.679 545 26 3 1 544 29622228 29621686 0.000000e+00 843.0
14 TraesCS2B01G216800 chr4B 94.312 545 28 3 1 544 29634379 29633837 0.000000e+00 832.0
15 TraesCS2B01G216800 chr4B 91.124 169 14 1 3483 3650 29711802 29711634 1.090000e-55 228.0
16 TraesCS2B01G216800 chr5B 94.505 546 26 4 1 544 689624929 689625472 0.000000e+00 839.0
17 TraesCS2B01G216800 chr5B 94.301 544 29 2 1 544 553182582 553182041 0.000000e+00 832.0
18 TraesCS2B01G216800 chr5B 93.967 547 33 0 1 547 553942631 553942085 0.000000e+00 828.0
19 TraesCS2B01G216800 chr5B 89.474 76 8 0 2416 2491 550933639 550933564 3.210000e-16 97.1
20 TraesCS2B01G216800 chr4A 94.118 544 32 0 1 544 660465851 660465308 0.000000e+00 828.0
21 TraesCS2B01G216800 chr4A 86.752 468 41 7 1110 1577 703411297 703411743 5.830000e-138 501.0
22 TraesCS2B01G216800 chr6B 93.818 550 31 3 1 549 280045319 280045866 0.000000e+00 824.0
23 TraesCS2B01G216800 chr1B 86.004 493 41 13 1095 1586 626308674 626309139 1.620000e-138 503.0
24 TraesCS2B01G216800 chr1B 90.909 176 14 2 3480 3653 487679068 487679243 6.530000e-58 235.0
25 TraesCS2B01G216800 chr3B 85.744 477 41 10 1110 1586 703847969 703848418 2.730000e-131 479.0
26 TraesCS2B01G216800 chr3B 91.667 156 12 1 3480 3634 513366261 513366416 8.500000e-52 215.0
27 TraesCS2B01G216800 chr3A 85.325 477 43 6 1110 1586 259838146 259838595 5.910000e-128 468.0
28 TraesCS2B01G216800 chr3A 84.277 477 48 10 1110 1586 451658021 451658470 1.290000e-119 440.0
29 TraesCS2B01G216800 chr3A 84.277 477 48 10 1110 1586 451665004 451664555 1.290000e-119 440.0
30 TraesCS2B01G216800 chr4D 90.960 177 15 1 3478 3653 34711988 34712164 1.820000e-58 237.0
31 TraesCS2B01G216800 chr4D 93.793 145 6 3 3279 3423 74225423 74225564 8.500000e-52 215.0
32 TraesCS2B01G216800 chr5D 93.038 158 10 1 3478 3634 475931786 475931943 3.040000e-56 230.0
33 TraesCS2B01G216800 chr5A 89.130 184 17 3 3478 3660 7626547 7626366 3.930000e-55 226.0
34 TraesCS2B01G216800 chr7D 90.854 164 12 3 3494 3655 509584541 509584379 2.360000e-52 217.0
35 TraesCS2B01G216800 chrUn 94.286 140 8 0 3289 3428 17025386 17025247 8.500000e-52 215.0
36 TraesCS2B01G216800 chrUn 94.286 140 8 0 3289 3428 17027619 17027480 8.500000e-52 215.0
37 TraesCS2B01G216800 chrUn 94.891 137 7 0 3289 3425 292131060 292131196 8.500000e-52 215.0
38 TraesCS2B01G216800 chrUn 94.891 137 7 0 3289 3425 302852130 302852266 8.500000e-52 215.0
39 TraesCS2B01G216800 chrUn 94.286 140 8 0 3289 3428 302859425 302859286 8.500000e-52 215.0
40 TraesCS2B01G216800 chr6D 93.793 145 6 3 3279 3423 302746326 302746467 8.500000e-52 215.0
41 TraesCS2B01G216800 chr1A 87.222 180 18 5 3478 3652 536430354 536430533 2.380000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G216800 chr2B 202918595 202922502 3907 True 7217.000000 7217 100.000000 1 3908 1 chr2B.!!$R1 3907
1 TraesCS2B01G216800 chr2B 724751940 724752487 547 False 824.000000 824 93.796000 1 548 1 chr2B.!!$F1 547
2 TraesCS2B01G216800 chr2D 145361495 145364386 2891 True 1203.666667 1855 88.614333 611 3900 3 chr2D.!!$R4 3289
3 TraesCS2B01G216800 chr2A 156666422 156669458 3036 False 1229.333333 1796 91.310000 621 3908 3 chr2A.!!$F1 3287
4 TraesCS2B01G216800 chr4B 29627605 29628147 542 True 848.000000 848 94.862000 1 544 1 chr4B.!!$R2 543
5 TraesCS2B01G216800 chr4B 29621686 29622228 542 True 843.000000 843 94.679000 1 544 1 chr4B.!!$R1 543
6 TraesCS2B01G216800 chr4B 29633837 29634379 542 True 832.000000 832 94.312000 1 544 1 chr4B.!!$R3 543
7 TraesCS2B01G216800 chr5B 689624929 689625472 543 False 839.000000 839 94.505000 1 544 1 chr5B.!!$F1 543
8 TraesCS2B01G216800 chr5B 553182041 553182582 541 True 832.000000 832 94.301000 1 544 1 chr5B.!!$R2 543
9 TraesCS2B01G216800 chr5B 553942085 553942631 546 True 828.000000 828 93.967000 1 547 1 chr5B.!!$R3 546
10 TraesCS2B01G216800 chr4A 660465308 660465851 543 True 828.000000 828 94.118000 1 544 1 chr4A.!!$R1 543
11 TraesCS2B01G216800 chr6B 280045319 280045866 547 False 824.000000 824 93.818000 1 549 1 chr6B.!!$F1 548
12 TraesCS2B01G216800 chrUn 17025247 17027619 2372 True 215.000000 215 94.286000 3289 3428 2 chrUn.!!$R2 139

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
816 821 0.036765 CCGAGTCAAATCCGGGTCAA 60.037 55.0 0.00 0.0 39.59 3.18 F
1410 1441 0.036388 TCACCGAGGTCTGCAATTCC 60.036 55.0 0.00 0.0 0.00 3.01 F
2214 2289 0.319555 GGCGCTTTTCCCACCTTTTC 60.320 55.0 7.64 0.0 0.00 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2370 2474 0.179134 GAGTGCGACTCGGCTATGTT 60.179 55.0 0.0 0.0 35.28 2.71 R
2493 2616 0.320697 AAGTACCCAGAACCGTCAGC 59.679 55.0 0.0 0.0 0.00 4.26 R
3733 3881 0.543749 ATGTACTCCTTGGCTCAGGC 59.456 55.0 0.0 0.0 33.35 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.660938 GGCCCTGTTCCGCCTGTT 62.661 66.667 0.00 0.00 42.21 3.16
431 434 2.625823 CCGCCGGCATCAGTTTTGT 61.626 57.895 28.98 0.00 0.00 2.83
456 459 2.326589 CCGGCGAAAAACGGGCTTA 61.327 57.895 9.30 0.00 46.08 3.09
475 478 4.070552 GAGAACGCGACTGGGGCT 62.071 66.667 15.93 0.00 0.00 5.19
548 551 1.056700 GGCTGGAGATGCCCTAAGGA 61.057 60.000 0.00 0.00 44.32 3.36
549 552 0.839946 GCTGGAGATGCCCTAAGGAA 59.160 55.000 0.00 0.00 34.97 3.36
550 553 1.212935 GCTGGAGATGCCCTAAGGAAA 59.787 52.381 0.00 0.00 34.97 3.13
552 555 3.877735 GCTGGAGATGCCCTAAGGAAAAA 60.878 47.826 0.00 0.00 34.97 1.94
553 556 3.696548 CTGGAGATGCCCTAAGGAAAAAC 59.303 47.826 0.00 0.00 34.97 2.43
554 557 2.683362 GGAGATGCCCTAAGGAAAAACG 59.317 50.000 0.00 0.00 33.47 3.60
555 558 3.606687 GAGATGCCCTAAGGAAAAACGA 58.393 45.455 0.00 0.00 33.47 3.85
558 561 3.053831 TGCCCTAAGGAAAAACGAGAG 57.946 47.619 0.00 0.00 33.47 3.20
559 562 2.290071 TGCCCTAAGGAAAAACGAGAGG 60.290 50.000 0.00 0.00 33.47 3.69
561 564 2.355818 CCCTAAGGAAAAACGAGAGGGG 60.356 54.545 0.00 0.00 38.83 4.79
563 566 0.771755 AAGGAAAAACGAGAGGGGCT 59.228 50.000 0.00 0.00 0.00 5.19
564 567 1.652947 AGGAAAAACGAGAGGGGCTA 58.347 50.000 0.00 0.00 0.00 3.93
565 568 2.197465 AGGAAAAACGAGAGGGGCTAT 58.803 47.619 0.00 0.00 0.00 2.97
566 569 2.170817 AGGAAAAACGAGAGGGGCTATC 59.829 50.000 0.00 0.00 0.00 2.08
567 570 2.562635 GAAAAACGAGAGGGGCTATCC 58.437 52.381 0.00 0.00 0.00 2.59
568 571 0.464452 AAAACGAGAGGGGCTATCCG 59.536 55.000 0.00 0.00 36.01 4.18
569 572 0.396695 AAACGAGAGGGGCTATCCGA 60.397 55.000 0.00 0.00 36.01 4.55
651 654 5.897518 CGCAGAAACAAACAAACAAATCATG 59.102 36.000 0.00 0.00 0.00 3.07
655 658 7.278424 CAGAAACAAACAAACAAATCATGGAGT 59.722 33.333 0.00 0.00 0.00 3.85
657 660 9.092876 GAAACAAACAAACAAATCATGGAGTAA 57.907 29.630 0.00 0.00 0.00 2.24
691 694 0.108138 CGAGCAAACGGGATTCCTCT 60.108 55.000 2.01 0.00 0.00 3.69
794 798 3.729698 GCCCAACCCAACGTACGC 61.730 66.667 16.72 0.00 0.00 4.42
797 801 1.015607 CCCAACCCAACGTACGCTAC 61.016 60.000 16.72 0.00 0.00 3.58
798 802 1.015607 CCAACCCAACGTACGCTACC 61.016 60.000 16.72 0.00 0.00 3.18
800 804 1.523154 AACCCAACGTACGCTACCGA 61.523 55.000 16.72 0.00 38.29 4.69
801 805 1.226491 CCCAACGTACGCTACCGAG 60.226 63.158 16.72 0.00 38.29 4.63
802 806 1.503542 CCAACGTACGCTACCGAGT 59.496 57.895 16.72 0.00 38.29 4.18
816 821 0.036765 CCGAGTCAAATCCGGGTCAA 60.037 55.000 0.00 0.00 39.59 3.18
818 823 2.356135 CGAGTCAAATCCGGGTCAAAT 58.644 47.619 0.00 0.00 0.00 2.32
862 874 1.724623 ACGTGTAGCAATACGCAACAG 59.275 47.619 6.56 0.00 43.27 3.16
869 881 0.999406 CAATACGCAACAGCTACGCT 59.001 50.000 0.00 0.00 40.77 5.07
906 918 4.404098 CGGTTGGTTCCTCCCGGG 62.404 72.222 16.85 16.85 36.84 5.73
952 968 3.231818 CCACCTCCCCTATATATAGCGG 58.768 54.545 14.95 14.95 31.09 5.52
1092 1120 1.153005 GAGCCAGGAGGAAGCCATG 60.153 63.158 0.00 0.00 36.89 3.66
1094 1122 1.452833 GCCAGGAGGAAGCCATGTC 60.453 63.158 0.00 0.00 36.89 3.06
1407 1438 0.904649 TCATCACCGAGGTCTGCAAT 59.095 50.000 0.00 0.00 0.00 3.56
1410 1441 0.036388 TCACCGAGGTCTGCAATTCC 60.036 55.000 0.00 0.00 0.00 3.01
1413 1444 1.815421 CGAGGTCTGCAATTCCGGG 60.815 63.158 0.00 0.00 0.00 5.73
1595 1626 1.244816 GGCCAGGTAACAAACACCTC 58.755 55.000 0.00 0.00 44.81 3.85
1666 1697 2.373224 GCTAATTGCTGCCTTTCCTCT 58.627 47.619 0.00 0.00 38.95 3.69
1682 1713 6.936900 CCTTTCCTCTCACAGTTCTTCAATTA 59.063 38.462 0.00 0.00 0.00 1.40
1685 1716 7.730364 TCCTCTCACAGTTCTTCAATTAAAC 57.270 36.000 0.00 0.00 0.00 2.01
1688 1719 8.571336 CCTCTCACAGTTCTTCAATTAAACAAT 58.429 33.333 0.00 0.00 0.00 2.71
1689 1720 9.956720 CTCTCACAGTTCTTCAATTAAACAATT 57.043 29.630 0.00 0.00 0.00 2.32
1733 1765 6.691388 CCCAAACTTTATATTTAGAACTGCGC 59.309 38.462 0.00 0.00 0.00 6.09
1788 1820 4.497608 ACGCCGTTTCGCATAATTTAATTG 59.502 37.500 0.00 0.00 0.00 2.32
1865 1898 9.757227 GGAATACTCCTAGATAATGCATGTATC 57.243 37.037 0.00 9.94 38.88 2.24
1869 1902 4.122776 CCTAGATAATGCATGTATCCGGC 58.877 47.826 17.79 0.00 0.00 6.13
1874 1907 6.418101 AGATAATGCATGTATCCGGCTTTAT 58.582 36.000 17.79 0.00 39.25 1.40
1891 1924 7.201821 CCGGCTTTATTTAGATTCTGAATTGGT 60.202 37.037 8.76 0.00 0.00 3.67
1966 1999 4.165372 CCTAAGTAGGCAATTTGGGGTAGA 59.835 45.833 0.00 0.00 36.53 2.59
1968 2001 3.964411 AGTAGGCAATTTGGGGTAGAAC 58.036 45.455 0.00 0.00 0.00 3.01
1974 2007 4.332828 GCAATTTGGGGTAGAACAGTAGT 58.667 43.478 0.00 0.00 0.00 2.73
1975 2008 4.156008 GCAATTTGGGGTAGAACAGTAGTG 59.844 45.833 0.00 0.00 0.00 2.74
1976 2009 4.569719 ATTTGGGGTAGAACAGTAGTGG 57.430 45.455 1.92 0.00 0.00 4.00
2032 2107 7.578310 ACTTGCTACTAATACCTCAATACGA 57.422 36.000 0.00 0.00 0.00 3.43
2033 2108 8.179509 ACTTGCTACTAATACCTCAATACGAT 57.820 34.615 0.00 0.00 0.00 3.73
2034 2109 9.293404 ACTTGCTACTAATACCTCAATACGATA 57.707 33.333 0.00 0.00 0.00 2.92
2085 2160 2.331166 TGGGGTAGAACAGTAGCACAA 58.669 47.619 0.00 0.00 30.89 3.33
2101 2176 7.011482 CAGTAGCACAAGATGTAGTTTAATCCC 59.989 40.741 0.00 0.00 0.00 3.85
2102 2177 6.067217 AGCACAAGATGTAGTTTAATCCCT 57.933 37.500 0.00 0.00 0.00 4.20
2103 2178 6.116126 AGCACAAGATGTAGTTTAATCCCTC 58.884 40.000 0.00 0.00 0.00 4.30
2104 2179 5.006746 GCACAAGATGTAGTTTAATCCCTCG 59.993 44.000 0.00 0.00 0.00 4.63
2105 2180 5.006746 CACAAGATGTAGTTTAATCCCTCGC 59.993 44.000 0.00 0.00 0.00 5.03
2106 2181 5.116180 CAAGATGTAGTTTAATCCCTCGCA 58.884 41.667 0.00 0.00 0.00 5.10
2107 2182 5.353394 AGATGTAGTTTAATCCCTCGCAA 57.647 39.130 0.00 0.00 0.00 4.85
2138 2213 7.524717 AAACAAGATGTAGTTTAATGCCTGT 57.475 32.000 0.00 0.00 36.28 4.00
2139 2214 7.524717 AACAAGATGTAGTTTAATGCCTGTT 57.475 32.000 0.00 0.00 0.00 3.16
2140 2215 6.913170 ACAAGATGTAGTTTAATGCCTGTTG 58.087 36.000 0.00 0.00 0.00 3.33
2141 2216 6.490040 ACAAGATGTAGTTTAATGCCTGTTGT 59.510 34.615 0.00 0.00 0.00 3.32
2160 2235 1.461127 GTCTGTTGATCTGAACACCGC 59.539 52.381 0.00 0.00 32.39 5.68
2214 2289 0.319555 GGCGCTTTTCCCACCTTTTC 60.320 55.000 7.64 0.00 0.00 2.29
2262 2337 4.262617 TGTAGTGTAGACCTCTGTAGCTG 58.737 47.826 0.00 0.00 0.00 4.24
2305 2380 3.822940 CGAGAACTGGACCTACTAGGAT 58.177 50.000 9.28 0.00 37.67 3.24
2306 2381 4.746089 GCGAGAACTGGACCTACTAGGATA 60.746 50.000 9.28 0.00 37.67 2.59
2307 2382 5.562635 CGAGAACTGGACCTACTAGGATAT 58.437 45.833 9.28 0.00 37.67 1.63
2308 2383 6.709281 CGAGAACTGGACCTACTAGGATATA 58.291 44.000 9.28 0.00 37.67 0.86
2309 2384 7.340256 CGAGAACTGGACCTACTAGGATATAT 58.660 42.308 9.28 0.00 37.67 0.86
2316 2414 7.246027 TGGACCTACTAGGATATATGCTTTCA 58.754 38.462 12.37 0.00 37.67 2.69
2335 2433 6.693113 GCTTTCAAGTAAAGGAGAAACACAAG 59.307 38.462 0.00 0.00 44.13 3.16
2363 2461 2.101125 CGTTGAGACGCACTTTGTTTG 58.899 47.619 0.00 0.00 43.03 2.93
2364 2462 1.846175 GTTGAGACGCACTTTGTTTGC 59.154 47.619 0.00 0.00 36.57 3.68
2365 2463 1.378531 TGAGACGCACTTTGTTTGCT 58.621 45.000 0.00 0.00 37.87 3.91
2366 2464 1.742831 TGAGACGCACTTTGTTTGCTT 59.257 42.857 0.00 0.00 37.87 3.91
2370 2474 2.920490 GACGCACTTTGTTTGCTTTCAA 59.080 40.909 0.00 0.00 37.87 2.69
2390 2494 1.032657 ACATAGCCGAGTCGCACTCT 61.033 55.000 7.12 3.73 42.92 3.24
2410 2514 4.174009 TCTGATCTGTTACGCTAACTTGC 58.826 43.478 0.00 0.00 39.38 4.01
2452 2568 0.673985 TCTACGATTCTGCCCCGATG 59.326 55.000 0.00 0.00 0.00 3.84
2484 2607 4.142816 GCTGTTAGATGTTGCTTTCACGAT 60.143 41.667 0.00 0.00 0.00 3.73
2491 2614 2.548057 TGTTGCTTTCACGATCCTGTTC 59.452 45.455 0.00 0.00 0.00 3.18
2493 2616 0.721718 GCTTTCACGATCCTGTTCGG 59.278 55.000 0.00 0.00 43.33 4.30
2501 2624 2.227089 GATCCTGTTCGGCTGACGGT 62.227 60.000 1.72 0.00 44.45 4.83
2504 2631 1.006102 CTGTTCGGCTGACGGTTCT 60.006 57.895 1.72 0.00 44.45 3.01
2508 2635 4.003788 CGGCTGACGGTTCTGGGT 62.004 66.667 0.00 0.00 39.42 4.51
2510 2637 1.079336 GGCTGACGGTTCTGGGTAC 60.079 63.158 0.00 0.00 0.00 3.34
2512 2639 0.320697 GCTGACGGTTCTGGGTACTT 59.679 55.000 0.00 0.00 0.00 2.24
2653 2781 0.381089 GGAGTCGGTGGACATCTACG 59.619 60.000 0.00 0.00 45.92 3.51
2874 3002 1.759236 GGACCCTTTCTTCCACGGT 59.241 57.895 0.00 0.00 0.00 4.83
2936 3068 4.222847 GGCGAGGGTGGATCGGAC 62.223 72.222 0.00 0.00 40.50 4.79
2937 3069 4.570663 GCGAGGGTGGATCGGACG 62.571 72.222 0.00 0.00 40.50 4.79
2938 3070 3.138798 CGAGGGTGGATCGGACGT 61.139 66.667 0.00 0.00 36.54 4.34
2939 3071 1.820906 CGAGGGTGGATCGGACGTA 60.821 63.158 0.00 0.00 36.54 3.57
3123 3267 7.537715 TGTATTCTTATTGTTGCATTCCAGTG 58.462 34.615 0.00 0.00 0.00 3.66
3135 3279 3.877508 GCATTCCAGTGGTACAGTATTCC 59.122 47.826 9.54 0.00 41.96 3.01
3155 3299 2.818432 CCTATTGAGAAGGCATCATGGC 59.182 50.000 2.08 2.08 44.10 4.40
3207 3351 3.928005 ACAGATGATGAATGAGCCAGT 57.072 42.857 0.00 0.00 0.00 4.00
3208 3352 6.676990 ATACAGATGATGAATGAGCCAGTA 57.323 37.500 0.00 0.00 0.00 2.74
3272 3416 1.656095 GAGAAGAAAGATGCCGACACG 59.344 52.381 0.00 0.00 0.00 4.49
3287 3431 3.863424 CCGACACGAAATGCTACTTGTAT 59.137 43.478 0.00 0.00 0.00 2.29
3288 3432 4.259810 CCGACACGAAATGCTACTTGTATG 60.260 45.833 0.00 0.00 0.00 2.39
3289 3433 4.326278 CGACACGAAATGCTACTTGTATGT 59.674 41.667 0.00 0.00 0.00 2.29
3290 3434 5.513849 CGACACGAAATGCTACTTGTATGTA 59.486 40.000 0.00 0.00 0.00 2.29
3291 3435 6.505888 CGACACGAAATGCTACTTGTATGTAC 60.506 42.308 0.00 0.00 0.00 2.90
3292 3436 6.395629 ACACGAAATGCTACTTGTATGTACT 58.604 36.000 0.00 0.00 0.00 2.73
3298 3442 4.868268 TGCTACTTGTATGTACTCCCTCT 58.132 43.478 0.00 0.00 0.00 3.69
3302 3446 4.936802 ACTTGTATGTACTCCCTCTGTCT 58.063 43.478 0.00 0.00 0.00 3.41
3313 3457 5.590818 ACTCCCTCTGTCTGGAAATACTTA 58.409 41.667 0.00 0.00 0.00 2.24
3440 3588 3.954258 TGCTATGAGGATCTCAACGAAGA 59.046 43.478 1.53 0.00 44.04 2.87
3441 3589 4.202060 TGCTATGAGGATCTCAACGAAGAC 60.202 45.833 1.53 0.00 44.04 3.01
3446 3594 2.755655 AGGATCTCAACGAAGACACGAT 59.244 45.455 0.00 0.00 37.03 3.73
3447 3595 3.193691 AGGATCTCAACGAAGACACGATT 59.806 43.478 0.00 0.00 37.03 3.34
3448 3596 3.927142 GGATCTCAACGAAGACACGATTT 59.073 43.478 0.00 0.00 37.03 2.17
3449 3597 4.031878 GGATCTCAACGAAGACACGATTTC 59.968 45.833 0.00 0.00 37.03 2.17
3450 3598 3.314553 TCTCAACGAAGACACGATTTCC 58.685 45.455 0.00 0.00 37.03 3.13
3451 3599 3.057019 CTCAACGAAGACACGATTTCCA 58.943 45.455 0.00 0.00 37.03 3.53
3452 3600 3.057019 TCAACGAAGACACGATTTCCAG 58.943 45.455 0.00 0.00 37.03 3.86
3453 3601 2.800544 CAACGAAGACACGATTTCCAGT 59.199 45.455 0.00 0.00 37.03 4.00
3454 3602 2.673833 ACGAAGACACGATTTCCAGTC 58.326 47.619 0.00 0.00 37.03 3.51
3455 3603 2.296471 ACGAAGACACGATTTCCAGTCT 59.704 45.455 0.00 0.00 42.72 3.24
3464 3612 1.880027 GATTTCCAGTCTTGCAACCGT 59.120 47.619 0.00 0.00 0.00 4.83
3477 3625 1.821216 CAACCGTGCCCTGTTTCTAT 58.179 50.000 0.00 0.00 0.00 1.98
3478 3626 2.937873 GCAACCGTGCCCTGTTTCTATA 60.938 50.000 0.00 0.00 45.68 1.31
3479 3627 3.340034 CAACCGTGCCCTGTTTCTATAA 58.660 45.455 0.00 0.00 0.00 0.98
3480 3628 3.261981 ACCGTGCCCTGTTTCTATAAG 57.738 47.619 0.00 0.00 0.00 1.73
3481 3629 2.093128 ACCGTGCCCTGTTTCTATAAGG 60.093 50.000 0.00 0.00 0.00 2.69
3482 3630 1.940613 CGTGCCCTGTTTCTATAAGGC 59.059 52.381 0.00 0.00 40.87 4.35
3483 3631 2.298610 GTGCCCTGTTTCTATAAGGCC 58.701 52.381 0.00 0.00 39.72 5.19
3484 3632 2.092375 GTGCCCTGTTTCTATAAGGCCT 60.092 50.000 0.00 0.00 39.72 5.19
3485 3633 2.580783 TGCCCTGTTTCTATAAGGCCTT 59.419 45.455 24.18 24.18 39.72 4.35
3486 3634 2.952310 GCCCTGTTTCTATAAGGCCTTG 59.048 50.000 28.77 11.78 34.23 3.61
3487 3635 3.624959 GCCCTGTTTCTATAAGGCCTTGT 60.625 47.826 28.77 24.00 34.23 3.16
3488 3636 4.384868 GCCCTGTTTCTATAAGGCCTTGTA 60.385 45.833 28.77 23.82 34.23 2.41
3489 3637 5.123936 CCCTGTTTCTATAAGGCCTTGTAC 58.876 45.833 28.77 16.18 0.00 2.90
3490 3638 5.338871 CCCTGTTTCTATAAGGCCTTGTACA 60.339 44.000 28.77 19.71 0.00 2.90
3491 3639 6.177610 CCTGTTTCTATAAGGCCTTGTACAA 58.822 40.000 28.77 16.43 0.00 2.41
3492 3640 6.828785 CCTGTTTCTATAAGGCCTTGTACAAT 59.171 38.462 28.77 15.25 0.00 2.71
3493 3641 7.201732 CCTGTTTCTATAAGGCCTTGTACAATG 60.202 40.741 28.77 13.35 0.00 2.82
3494 3642 7.398829 TGTTTCTATAAGGCCTTGTACAATGA 58.601 34.615 28.77 15.41 0.00 2.57
3495 3643 7.552687 TGTTTCTATAAGGCCTTGTACAATGAG 59.447 37.037 28.77 14.08 0.00 2.90
3496 3644 7.432148 TTCTATAAGGCCTTGTACAATGAGA 57.568 36.000 28.77 16.17 0.00 3.27
3497 3645 7.055667 TCTATAAGGCCTTGTACAATGAGAG 57.944 40.000 28.77 11.83 0.00 3.20
3498 3646 5.957771 ATAAGGCCTTGTACAATGAGAGA 57.042 39.130 28.77 2.92 0.00 3.10
3499 3647 4.851639 AAGGCCTTGTACAATGAGAGAT 57.148 40.909 19.73 0.00 0.00 2.75
3500 3648 4.148128 AGGCCTTGTACAATGAGAGATG 57.852 45.455 14.26 0.00 0.00 2.90
3501 3649 2.615912 GGCCTTGTACAATGAGAGATGC 59.384 50.000 14.26 5.37 0.00 3.91
3502 3650 3.539604 GCCTTGTACAATGAGAGATGCT 58.460 45.455 14.26 0.00 0.00 3.79
3503 3651 3.944015 GCCTTGTACAATGAGAGATGCTT 59.056 43.478 14.26 0.00 0.00 3.91
3504 3652 5.118990 GCCTTGTACAATGAGAGATGCTTA 58.881 41.667 14.26 0.00 0.00 3.09
3505 3653 5.236047 GCCTTGTACAATGAGAGATGCTTAG 59.764 44.000 14.26 0.00 0.00 2.18
3506 3654 6.577103 CCTTGTACAATGAGAGATGCTTAGA 58.423 40.000 9.13 0.00 0.00 2.10
3507 3655 7.044181 CCTTGTACAATGAGAGATGCTTAGAA 58.956 38.462 9.13 0.00 0.00 2.10
3508 3656 7.550551 CCTTGTACAATGAGAGATGCTTAGAAA 59.449 37.037 9.13 0.00 0.00 2.52
3509 3657 8.846943 TTGTACAATGAGAGATGCTTAGAAAA 57.153 30.769 3.59 0.00 0.00 2.29
3510 3658 8.846943 TGTACAATGAGAGATGCTTAGAAAAA 57.153 30.769 0.00 0.00 0.00 1.94
3511 3659 9.453572 TGTACAATGAGAGATGCTTAGAAAAAT 57.546 29.630 0.00 0.00 0.00 1.82
3517 3665 7.974675 TGAGAGATGCTTAGAAAAATAAACCG 58.025 34.615 0.00 0.00 0.00 4.44
3518 3666 7.822334 TGAGAGATGCTTAGAAAAATAAACCGA 59.178 33.333 0.00 0.00 0.00 4.69
3519 3667 8.202745 AGAGATGCTTAGAAAAATAAACCGAG 57.797 34.615 0.00 0.00 0.00 4.63
3520 3668 7.824779 AGAGATGCTTAGAAAAATAAACCGAGT 59.175 33.333 0.00 0.00 0.00 4.18
3521 3669 8.336801 AGATGCTTAGAAAAATAAACCGAGTT 57.663 30.769 0.00 0.00 0.00 3.01
3522 3670 8.451748 AGATGCTTAGAAAAATAAACCGAGTTC 58.548 33.333 0.00 0.00 0.00 3.01
3523 3671 7.739498 TGCTTAGAAAAATAAACCGAGTTCT 57.261 32.000 0.00 0.00 0.00 3.01
3524 3672 8.161699 TGCTTAGAAAAATAAACCGAGTTCTT 57.838 30.769 0.00 0.00 0.00 2.52
3525 3673 8.626526 TGCTTAGAAAAATAAACCGAGTTCTTT 58.373 29.630 0.00 0.00 0.00 2.52
3526 3674 9.459640 GCTTAGAAAAATAAACCGAGTTCTTTT 57.540 29.630 0.00 0.00 0.00 2.27
3534 3682 5.912360 AAACCGAGTTCTTTTAAGTACCG 57.088 39.130 0.00 0.00 0.00 4.02
3535 3683 3.917988 ACCGAGTTCTTTTAAGTACCGG 58.082 45.455 18.24 18.24 41.31 5.28
3536 3684 3.321968 ACCGAGTTCTTTTAAGTACCGGT 59.678 43.478 13.98 13.98 42.41 5.28
3537 3685 3.676646 CCGAGTTCTTTTAAGTACCGGTG 59.323 47.826 19.93 0.00 36.45 4.94
3538 3686 3.122445 CGAGTTCTTTTAAGTACCGGTGC 59.878 47.826 19.93 17.74 0.00 5.01
3539 3687 3.405831 AGTTCTTTTAAGTACCGGTGCC 58.594 45.455 19.93 7.78 0.00 5.01
3540 3688 3.072038 AGTTCTTTTAAGTACCGGTGCCT 59.928 43.478 19.93 8.49 0.00 4.75
3541 3689 4.284234 AGTTCTTTTAAGTACCGGTGCCTA 59.716 41.667 19.93 7.23 0.00 3.93
3542 3690 5.046087 AGTTCTTTTAAGTACCGGTGCCTAT 60.046 40.000 19.93 7.95 0.00 2.57
3543 3691 5.425196 TCTTTTAAGTACCGGTGCCTATT 57.575 39.130 19.93 9.21 0.00 1.73
3544 3692 5.807909 TCTTTTAAGTACCGGTGCCTATTT 58.192 37.500 19.93 8.81 0.00 1.40
3545 3693 5.876460 TCTTTTAAGTACCGGTGCCTATTTC 59.124 40.000 19.93 0.00 0.00 2.17
3546 3694 5.425196 TTTAAGTACCGGTGCCTATTTCT 57.575 39.130 19.93 0.00 0.00 2.52
3547 3695 6.543430 TTTAAGTACCGGTGCCTATTTCTA 57.457 37.500 19.93 0.00 0.00 2.10
3548 3696 4.397481 AAGTACCGGTGCCTATTTCTAC 57.603 45.455 19.93 2.54 0.00 2.59
3549 3697 3.368248 AGTACCGGTGCCTATTTCTACA 58.632 45.455 19.93 0.00 0.00 2.74
3550 3698 2.685850 ACCGGTGCCTATTTCTACAC 57.314 50.000 6.12 0.00 0.00 2.90
3551 3699 1.134907 ACCGGTGCCTATTTCTACACG 60.135 52.381 6.12 0.00 33.81 4.49
3552 3700 1.135527 CCGGTGCCTATTTCTACACGA 59.864 52.381 0.00 0.00 33.81 4.35
3553 3701 2.460918 CGGTGCCTATTTCTACACGAG 58.539 52.381 0.00 0.00 33.81 4.18
3554 3702 2.098607 CGGTGCCTATTTCTACACGAGA 59.901 50.000 0.00 0.00 33.81 4.04
3555 3703 3.707793 GGTGCCTATTTCTACACGAGAG 58.292 50.000 0.00 0.00 34.93 3.20
3556 3704 3.380637 GGTGCCTATTTCTACACGAGAGA 59.619 47.826 0.00 0.00 34.93 3.10
3557 3705 4.352887 GTGCCTATTTCTACACGAGAGAC 58.647 47.826 0.00 0.00 34.93 3.36
3559 3707 3.619729 CCTATTTCTACACGAGAGACGC 58.380 50.000 0.00 0.00 46.94 5.19
3560 3708 3.312973 CCTATTTCTACACGAGAGACGCT 59.687 47.826 0.00 0.00 46.94 5.07
3561 3709 3.851976 ATTTCTACACGAGAGACGCTT 57.148 42.857 0.00 0.00 46.94 4.68
3562 3710 4.959596 ATTTCTACACGAGAGACGCTTA 57.040 40.909 0.00 0.00 46.94 3.09
3563 3711 4.337985 TTTCTACACGAGAGACGCTTAG 57.662 45.455 0.00 0.00 46.94 2.18
3564 3712 2.969990 TCTACACGAGAGACGCTTAGT 58.030 47.619 0.00 0.00 46.94 2.24
3565 3713 3.332919 TCTACACGAGAGACGCTTAGTT 58.667 45.455 0.00 0.00 46.94 2.24
3566 3714 4.498241 TCTACACGAGAGACGCTTAGTTA 58.502 43.478 0.00 0.00 46.94 2.24
3567 3715 4.931601 TCTACACGAGAGACGCTTAGTTAA 59.068 41.667 0.00 0.00 46.94 2.01
3568 3716 4.080969 ACACGAGAGACGCTTAGTTAAG 57.919 45.455 0.00 0.00 46.94 1.85
3569 3717 9.667930 TTCTACACGAGAGACGCTTAGTTAAGC 62.668 44.444 12.72 12.72 44.08 3.09
3584 3732 8.906636 CTTAGTTAAGCGTCTATCTTGTACAA 57.093 34.615 8.28 8.28 0.00 2.41
3585 3733 9.350357 CTTAGTTAAGCGTCTATCTTGTACAAA 57.650 33.333 10.03 1.56 0.00 2.83
3586 3734 9.865321 TTAGTTAAGCGTCTATCTTGTACAAAT 57.135 29.630 10.03 8.74 0.00 2.32
3588 3736 9.865321 AGTTAAGCGTCTATCTTGTACAAATAA 57.135 29.630 10.03 0.00 0.00 1.40
3590 3738 6.830114 AGCGTCTATCTTGTACAAATAAGC 57.170 37.500 10.03 13.54 0.00 3.09
3591 3739 6.338146 AGCGTCTATCTTGTACAAATAAGCA 58.662 36.000 10.03 0.00 0.00 3.91
3592 3740 6.986817 AGCGTCTATCTTGTACAAATAAGCAT 59.013 34.615 10.03 0.00 0.00 3.79
3593 3741 7.169982 AGCGTCTATCTTGTACAAATAAGCATC 59.830 37.037 10.03 0.00 0.00 3.91
3594 3742 7.494130 CGTCTATCTTGTACAAATAAGCATCG 58.506 38.462 10.03 4.89 0.00 3.84
3595 3743 7.358435 CGTCTATCTTGTACAAATAAGCATCGG 60.358 40.741 10.03 0.00 0.00 4.18
3596 3744 7.438459 GTCTATCTTGTACAAATAAGCATCGGT 59.562 37.037 10.03 0.00 0.00 4.69
3597 3745 5.794687 TCTTGTACAAATAAGCATCGGTG 57.205 39.130 10.03 0.00 0.00 4.94
3611 3759 4.766404 CATCGGTGCTTAAGAAAAACCT 57.234 40.909 6.67 0.00 0.00 3.50
3612 3760 4.475944 CATCGGTGCTTAAGAAAAACCTG 58.524 43.478 6.67 5.04 0.00 4.00
3613 3761 2.882137 TCGGTGCTTAAGAAAAACCTGG 59.118 45.455 6.67 0.00 0.00 4.45
3614 3762 2.621526 CGGTGCTTAAGAAAAACCTGGT 59.378 45.455 6.67 0.00 0.00 4.00
3615 3763 3.067601 CGGTGCTTAAGAAAAACCTGGTT 59.932 43.478 6.18 6.18 0.00 3.67
3616 3764 4.440940 CGGTGCTTAAGAAAAACCTGGTTT 60.441 41.667 18.84 18.84 37.34 3.27
3617 3765 5.221087 CGGTGCTTAAGAAAAACCTGGTTTA 60.221 40.000 24.08 6.44 34.43 2.01
3618 3766 6.516028 CGGTGCTTAAGAAAAACCTGGTTTAT 60.516 38.462 24.08 13.42 34.43 1.40
3619 3767 7.214381 GGTGCTTAAGAAAAACCTGGTTTATT 58.786 34.615 24.08 19.59 34.43 1.40
3620 3768 7.713507 GGTGCTTAAGAAAAACCTGGTTTATTT 59.286 33.333 24.08 15.91 34.43 1.40
3621 3769 8.761497 GTGCTTAAGAAAAACCTGGTTTATTTC 58.239 33.333 24.08 22.38 34.43 2.17
3622 3770 8.700973 TGCTTAAGAAAAACCTGGTTTATTTCT 58.299 29.630 23.89 23.89 35.46 2.52
3623 3771 9.193133 GCTTAAGAAAAACCTGGTTTATTTCTC 57.807 33.333 27.16 17.02 33.94 2.87
3628 3776 8.577296 AGAAAAACCTGGTTTATTTCTCTAAGC 58.423 33.333 23.89 7.10 34.43 3.09
3629 3777 7.833285 AAAACCTGGTTTATTTCTCTAAGCA 57.167 32.000 24.08 0.00 34.43 3.91
3630 3778 6.819397 AACCTGGTTTATTTCTCTAAGCAC 57.181 37.500 6.18 0.00 0.00 4.40
3631 3779 5.254115 ACCTGGTTTATTTCTCTAAGCACC 58.746 41.667 0.00 0.00 0.00 5.01
3632 3780 5.014228 ACCTGGTTTATTTCTCTAAGCACCT 59.986 40.000 0.00 0.00 0.00 4.00
3633 3781 5.946377 CCTGGTTTATTTCTCTAAGCACCTT 59.054 40.000 0.00 0.00 0.00 3.50
3634 3782 6.127897 CCTGGTTTATTTCTCTAAGCACCTTG 60.128 42.308 0.00 0.00 0.00 3.61
3635 3783 5.183140 TGGTTTATTTCTCTAAGCACCTTGC 59.817 40.000 0.00 0.00 45.46 4.01
3646 3794 2.247311 GCACCTTGCATTGTACGAAG 57.753 50.000 0.00 0.00 44.26 3.79
3647 3795 1.729149 GCACCTTGCATTGTACGAAGC 60.729 52.381 3.28 3.28 44.26 3.86
3648 3796 1.135689 CACCTTGCATTGTACGAAGCC 60.136 52.381 7.82 0.00 0.00 4.35
3649 3797 1.271379 ACCTTGCATTGTACGAAGCCT 60.271 47.619 7.82 0.00 0.00 4.58
3673 3821 1.896220 AGCATCCAACTCGCAGAAAA 58.104 45.000 0.00 0.00 34.09 2.29
3674 3822 2.229792 AGCATCCAACTCGCAGAAAAA 58.770 42.857 0.00 0.00 34.09 1.94
3675 3823 2.227388 AGCATCCAACTCGCAGAAAAAG 59.773 45.455 0.00 0.00 34.09 2.27
3678 3826 4.610945 CATCCAACTCGCAGAAAAAGTTT 58.389 39.130 0.00 0.00 34.09 2.66
3679 3827 4.287238 TCCAACTCGCAGAAAAAGTTTC 57.713 40.909 0.00 0.00 34.09 2.78
3680 3828 3.692101 TCCAACTCGCAGAAAAAGTTTCA 59.308 39.130 3.74 0.00 34.09 2.69
3681 3829 3.791353 CCAACTCGCAGAAAAAGTTTCAC 59.209 43.478 3.74 0.00 34.09 3.18
3682 3830 4.438744 CCAACTCGCAGAAAAAGTTTCACT 60.439 41.667 3.74 0.00 34.09 3.41
3683 3831 4.278678 ACTCGCAGAAAAAGTTTCACTG 57.721 40.909 13.95 13.95 34.09 3.66
3695 3843 2.111756 GTTTCACTGCGCAAGAAACAG 58.888 47.619 37.26 20.82 46.28 3.16
3697 3845 1.378531 TCACTGCGCAAGAAACAGTT 58.621 45.000 13.05 0.00 42.59 3.16
3727 3875 2.123640 AGAGGAGACGGCTAGCCC 60.124 66.667 28.09 14.98 0.00 5.19
3728 3876 3.228017 GAGGAGACGGCTAGCCCC 61.228 72.222 28.09 21.92 0.00 5.80
3729 3877 3.742248 GAGGAGACGGCTAGCCCCT 62.742 68.421 28.09 26.14 0.00 4.79
3730 3878 3.541713 GGAGACGGCTAGCCCCTG 61.542 72.222 28.09 16.49 0.00 4.45
3731 3879 2.442272 GAGACGGCTAGCCCCTGA 60.442 66.667 28.09 0.00 0.00 3.86
3732 3880 2.443016 AGACGGCTAGCCCCTGAG 60.443 66.667 28.09 15.72 0.00 3.35
3733 3881 3.541713 GACGGCTAGCCCCTGAGG 61.542 72.222 28.09 14.98 39.47 3.86
3800 3948 4.782019 TGCACCCAACTTGTTCATATTC 57.218 40.909 0.00 0.00 0.00 1.75
3801 3949 4.406456 TGCACCCAACTTGTTCATATTCT 58.594 39.130 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 185 2.753966 CCATGCCGCCGAAGAAGTG 61.754 63.158 0.00 0.00 0.00 3.16
422 425 1.301401 CGGCTCGGGACAAAACTGA 60.301 57.895 0.00 0.00 0.00 3.41
456 459 2.579201 CCCCAGTCGCGTTCTCAT 59.421 61.111 5.77 0.00 0.00 2.90
490 493 0.101759 CCCAGATGATTTTGCCGCAG 59.898 55.000 0.00 0.00 0.00 5.18
548 551 1.134491 CGGATAGCCCCTCTCGTTTTT 60.134 52.381 0.00 0.00 0.00 1.94
549 552 0.464452 CGGATAGCCCCTCTCGTTTT 59.536 55.000 0.00 0.00 0.00 2.43
550 553 0.396695 TCGGATAGCCCCTCTCGTTT 60.397 55.000 0.00 0.00 0.00 3.60
552 555 1.228306 CTCGGATAGCCCCTCTCGT 60.228 63.158 0.00 0.00 0.00 4.18
553 556 2.631580 GCTCGGATAGCCCCTCTCG 61.632 68.421 0.00 0.00 46.25 4.04
554 557 3.372123 GCTCGGATAGCCCCTCTC 58.628 66.667 0.00 0.00 46.25 3.20
612 615 1.485838 CTGCGCTGATGACGGTGATC 61.486 60.000 9.73 0.25 35.15 2.92
613 616 1.520120 CTGCGCTGATGACGGTGAT 60.520 57.895 9.73 0.00 35.15 3.06
614 617 2.125952 CTGCGCTGATGACGGTGA 60.126 61.111 9.73 0.00 35.15 4.02
615 618 1.291184 TTTCTGCGCTGATGACGGTG 61.291 55.000 18.14 0.00 36.14 4.94
616 619 1.005037 TTTCTGCGCTGATGACGGT 60.005 52.632 18.14 0.00 0.00 4.83
617 620 1.291184 TGTTTCTGCGCTGATGACGG 61.291 55.000 18.14 0.00 0.00 4.79
618 621 0.512518 TTGTTTCTGCGCTGATGACG 59.487 50.000 18.14 0.00 0.00 4.35
619 622 2.286950 TGTTTGTTTCTGCGCTGATGAC 60.287 45.455 18.14 18.20 0.00 3.06
651 654 6.795593 GCTCGTTTCTGTTTGTTTATTACTCC 59.204 38.462 0.00 0.00 0.00 3.85
655 658 7.164498 CGTTTGCTCGTTTCTGTTTGTTTATTA 59.836 33.333 0.00 0.00 0.00 0.98
657 660 5.454232 CGTTTGCTCGTTTCTGTTTGTTTAT 59.546 36.000 0.00 0.00 0.00 1.40
691 694 4.409218 GACGCCGCGTGGACTGTA 62.409 66.667 25.60 0.00 41.37 2.74
782 786 1.926511 CTCGGTAGCGTACGTTGGGT 61.927 60.000 17.90 0.00 0.00 4.51
790 794 1.064505 CGGATTTGACTCGGTAGCGTA 59.935 52.381 14.79 0.29 0.00 4.42
791 795 0.179145 CGGATTTGACTCGGTAGCGT 60.179 55.000 14.79 0.00 0.00 5.07
794 798 0.822164 ACCCGGATTTGACTCGGTAG 59.178 55.000 0.73 0.00 41.98 3.18
797 801 0.036765 TTGACCCGGATTTGACTCGG 60.037 55.000 0.73 0.00 43.05 4.63
798 802 1.803334 TTTGACCCGGATTTGACTCG 58.197 50.000 0.73 0.00 0.00 4.18
800 804 2.620627 GGGATTTGACCCGGATTTGACT 60.621 50.000 0.73 0.00 40.49 3.41
801 805 1.749063 GGGATTTGACCCGGATTTGAC 59.251 52.381 0.73 0.00 40.49 3.18
802 806 2.137810 GGGATTTGACCCGGATTTGA 57.862 50.000 0.73 0.00 40.49 2.69
816 821 1.608590 CGTACGTACGTATGGGGGATT 59.391 52.381 33.95 6.37 44.13 3.01
818 823 2.701587 CGTACGTACGTATGGGGGA 58.298 57.895 33.95 9.91 44.13 4.81
1380 1411 1.276421 ACCTCGGTGATGAAGTTGAGG 59.724 52.381 4.60 4.60 46.58 3.86
1413 1444 4.253257 CGGTAGTCGCGGAGGCTC 62.253 72.222 6.13 5.78 35.65 4.70
1425 1456 4.728102 TTGTGCCGGTCGCGGTAG 62.728 66.667 6.13 0.00 42.08 3.18
1595 1626 3.699538 TGATGGGCGCAGGTATAGTATAG 59.300 47.826 10.83 0.00 0.00 1.31
1685 1716 7.446319 TGGGAGATTGCAGATACTCAATAATTG 59.554 37.037 11.45 0.00 33.49 2.32
1688 1719 6.499106 TGGGAGATTGCAGATACTCAATAA 57.501 37.500 11.45 0.00 33.49 1.40
1689 1720 6.499106 TTGGGAGATTGCAGATACTCAATA 57.501 37.500 11.45 0.00 33.49 1.90
1693 1724 4.775236 AGTTTGGGAGATTGCAGATACTC 58.225 43.478 0.00 0.00 0.00 2.59
1694 1725 4.851639 AGTTTGGGAGATTGCAGATACT 57.148 40.909 0.00 0.00 0.00 2.12
1865 1898 7.141363 CCAATTCAGAATCTAAATAAAGCCGG 58.859 38.462 0.00 0.00 0.00 6.13
1948 1981 3.692690 TGTTCTACCCCAAATTGCCTAC 58.307 45.455 0.00 0.00 0.00 3.18
1949 1982 3.332485 ACTGTTCTACCCCAAATTGCCTA 59.668 43.478 0.00 0.00 0.00 3.93
1966 1999 5.464030 AAACTACATCGTCCACTACTGTT 57.536 39.130 0.00 0.00 0.00 3.16
1968 2001 6.028368 CAGTAAACTACATCGTCCACTACTG 58.972 44.000 0.00 0.00 0.00 2.74
1974 2007 5.648178 TTAGCAGTAAACTACATCGTCCA 57.352 39.130 0.00 0.00 0.00 4.02
1975 2008 5.865552 TGTTTAGCAGTAAACTACATCGTCC 59.134 40.000 9.28 0.00 45.75 4.79
1976 2009 6.939551 TGTTTAGCAGTAAACTACATCGTC 57.060 37.500 9.28 0.00 45.75 4.20
2085 2160 5.353394 TTGCGAGGGATTAAACTACATCT 57.647 39.130 0.00 0.00 0.00 2.90
2112 2187 8.421002 ACAGGCATTAAACTACATCTTGTTTTT 58.579 29.630 0.00 0.00 37.53 1.94
2113 2188 7.951591 ACAGGCATTAAACTACATCTTGTTTT 58.048 30.769 0.00 0.00 37.53 2.43
2114 2189 7.524717 ACAGGCATTAAACTACATCTTGTTT 57.475 32.000 0.00 0.00 39.37 2.83
2115 2190 7.014230 ACAACAGGCATTAAACTACATCTTGTT 59.986 33.333 0.00 0.00 0.00 2.83
2116 2191 6.490040 ACAACAGGCATTAAACTACATCTTGT 59.510 34.615 0.00 0.00 0.00 3.16
2117 2192 6.913170 ACAACAGGCATTAAACTACATCTTG 58.087 36.000 0.00 0.00 0.00 3.02
2138 2213 3.130633 CGGTGTTCAGATCAACAGACAA 58.869 45.455 0.00 0.00 36.94 3.18
2139 2214 2.754472 CGGTGTTCAGATCAACAGACA 58.246 47.619 0.00 0.00 36.94 3.41
2140 2215 1.461127 GCGGTGTTCAGATCAACAGAC 59.539 52.381 0.00 0.00 36.94 3.51
2141 2216 1.608025 GGCGGTGTTCAGATCAACAGA 60.608 52.381 0.00 0.00 36.94 3.41
2214 2289 1.192534 GTCGTCACAGAAAAGAAGCGG 59.807 52.381 0.00 0.00 0.00 5.52
2262 2337 1.996191 GATGCTTTCAGAGACACGGAC 59.004 52.381 0.00 0.00 0.00 4.79
2305 2380 9.733556 TGTTTCTCCTTTACTTGAAAGCATATA 57.266 29.630 0.00 0.00 42.91 0.86
2306 2381 8.515414 GTGTTTCTCCTTTACTTGAAAGCATAT 58.485 33.333 0.00 0.00 42.91 1.78
2307 2382 7.500892 TGTGTTTCTCCTTTACTTGAAAGCATA 59.499 33.333 0.00 0.00 42.91 3.14
2308 2383 6.321181 TGTGTTTCTCCTTTACTTGAAAGCAT 59.679 34.615 0.00 0.00 42.91 3.79
2309 2384 5.650266 TGTGTTTCTCCTTTACTTGAAAGCA 59.350 36.000 0.00 0.00 42.91 3.91
2316 2414 6.238759 GCATCACTTGTGTTTCTCCTTTACTT 60.239 38.462 0.46 0.00 0.00 2.24
2363 2461 2.222819 CGACTCGGCTATGTTTGAAAGC 60.223 50.000 0.00 0.00 35.47 3.51
2364 2462 2.222819 GCGACTCGGCTATGTTTGAAAG 60.223 50.000 0.00 0.00 0.00 2.62
2365 2463 1.730064 GCGACTCGGCTATGTTTGAAA 59.270 47.619 0.00 0.00 0.00 2.69
2366 2464 1.337354 TGCGACTCGGCTATGTTTGAA 60.337 47.619 0.00 0.00 0.00 2.69
2370 2474 0.179134 GAGTGCGACTCGGCTATGTT 60.179 55.000 0.00 0.00 35.28 2.71
2390 2494 4.174009 GAGCAAGTTAGCGTAACAGATCA 58.826 43.478 0.00 0.00 41.07 2.92
2469 2585 2.783135 ACAGGATCGTGAAAGCAACAT 58.217 42.857 21.63 0.00 0.00 2.71
2484 2607 2.430382 GAACCGTCAGCCGAACAGGA 62.430 60.000 0.00 0.00 45.00 3.86
2491 2614 2.642254 TACCCAGAACCGTCAGCCG 61.642 63.158 0.00 0.00 0.00 5.52
2493 2616 0.320697 AAGTACCCAGAACCGTCAGC 59.679 55.000 0.00 0.00 0.00 4.26
2501 2624 0.400213 CTGCACCCAAGTACCCAGAA 59.600 55.000 0.00 0.00 0.00 3.02
2504 2631 1.772567 ACCTGCACCCAAGTACCCA 60.773 57.895 0.00 0.00 0.00 4.51
2508 2635 1.429930 TCTTCACCTGCACCCAAGTA 58.570 50.000 0.00 0.00 0.00 2.24
2510 2637 1.457346 GATCTTCACCTGCACCCAAG 58.543 55.000 0.00 0.00 0.00 3.61
2512 2639 1.296392 CGATCTTCACCTGCACCCA 59.704 57.895 0.00 0.00 0.00 4.51
2653 2781 3.550992 CACGCACATCCCGTACGC 61.551 66.667 10.49 0.00 37.96 4.42
2919 3051 4.222847 GTCCGATCCACCCTCGCC 62.223 72.222 0.00 0.00 34.84 5.54
2936 3068 5.094134 GGAGAAGTTAACACTGCTACTACG 58.906 45.833 8.61 0.00 39.34 3.51
2937 3069 5.094134 CGGAGAAGTTAACACTGCTACTAC 58.906 45.833 8.61 0.00 39.34 2.73
2938 3070 4.763793 ACGGAGAAGTTAACACTGCTACTA 59.236 41.667 8.61 0.00 39.34 1.82
2939 3071 3.573110 ACGGAGAAGTTAACACTGCTACT 59.427 43.478 8.61 0.00 39.34 2.57
3038 3178 5.933187 TCTTTACACATTTTGCTCGCTTA 57.067 34.783 0.00 0.00 0.00 3.09
3123 3267 6.183360 TGCCTTCTCAATAGGAATACTGTACC 60.183 42.308 0.00 0.00 34.56 3.34
3135 3279 3.752222 GAGCCATGATGCCTTCTCAATAG 59.248 47.826 0.00 0.00 0.00 1.73
3180 3324 5.996513 GGCTCATTCATCATCTGTATTCAGT 59.003 40.000 0.00 0.00 41.91 3.41
3190 3334 4.008330 CCCATACTGGCTCATTCATCATC 58.992 47.826 0.00 0.00 35.79 2.92
3207 3351 4.382685 CGTCAAGGTTCTAAAGAGCCCATA 60.383 45.833 9.04 0.00 45.27 2.74
3208 3352 3.619979 CGTCAAGGTTCTAAAGAGCCCAT 60.620 47.826 9.04 0.00 45.27 4.00
3211 3355 1.732809 GCGTCAAGGTTCTAAAGAGCC 59.267 52.381 4.80 4.80 44.60 4.70
3212 3356 2.413837 TGCGTCAAGGTTCTAAAGAGC 58.586 47.619 0.00 0.00 0.00 4.09
3218 3362 5.298276 AGAAACAAAATGCGTCAAGGTTCTA 59.702 36.000 3.69 0.00 0.00 2.10
3272 3416 6.583562 AGGGAGTACATACAAGTAGCATTTC 58.416 40.000 0.00 0.00 0.00 2.17
3287 3431 2.992847 TTCCAGACAGAGGGAGTACA 57.007 50.000 0.00 0.00 34.02 2.90
3288 3432 4.957327 AGTATTTCCAGACAGAGGGAGTAC 59.043 45.833 0.00 0.00 34.02 2.73
3289 3433 5.208294 AGTATTTCCAGACAGAGGGAGTA 57.792 43.478 0.00 0.00 34.02 2.59
3290 3434 4.067944 AGTATTTCCAGACAGAGGGAGT 57.932 45.455 0.00 0.00 34.02 3.85
3291 3435 6.325028 TGATAAGTATTTCCAGACAGAGGGAG 59.675 42.308 0.00 0.00 34.02 4.30
3292 3436 6.202331 TGATAAGTATTTCCAGACAGAGGGA 58.798 40.000 0.00 0.00 0.00 4.20
3440 3588 2.254546 TGCAAGACTGGAAATCGTGT 57.745 45.000 0.00 0.00 0.00 4.49
3441 3589 2.350772 GGTTGCAAGACTGGAAATCGTG 60.351 50.000 0.00 0.00 34.32 4.35
3446 3594 1.021202 CACGGTTGCAAGACTGGAAA 58.979 50.000 0.00 0.00 34.32 3.13
3447 3595 2.701587 CACGGTTGCAAGACTGGAA 58.298 52.632 0.00 0.00 0.00 3.53
3448 3596 4.454948 CACGGTTGCAAGACTGGA 57.545 55.556 0.00 0.00 0.00 3.86
3477 3625 5.674525 CATCTCTCATTGTACAAGGCCTTA 58.325 41.667 20.00 1.64 0.00 2.69
3478 3626 4.521146 CATCTCTCATTGTACAAGGCCTT 58.479 43.478 13.78 13.78 0.00 4.35
3479 3627 3.683847 GCATCTCTCATTGTACAAGGCCT 60.684 47.826 15.24 0.00 0.00 5.19
3480 3628 2.615912 GCATCTCTCATTGTACAAGGCC 59.384 50.000 15.24 0.00 0.00 5.19
3481 3629 3.539604 AGCATCTCTCATTGTACAAGGC 58.460 45.455 15.24 2.71 0.00 4.35
3482 3630 6.577103 TCTAAGCATCTCTCATTGTACAAGG 58.423 40.000 13.96 13.96 0.00 3.61
3483 3631 8.484641 TTTCTAAGCATCTCTCATTGTACAAG 57.515 34.615 14.65 6.58 0.00 3.16
3484 3632 8.846943 TTTTCTAAGCATCTCTCATTGTACAA 57.153 30.769 11.41 11.41 0.00 2.41
3485 3633 8.846943 TTTTTCTAAGCATCTCTCATTGTACA 57.153 30.769 0.00 0.00 0.00 2.90
3491 3639 8.616076 CGGTTTATTTTTCTAAGCATCTCTCAT 58.384 33.333 0.00 0.00 0.00 2.90
3492 3640 7.822334 TCGGTTTATTTTTCTAAGCATCTCTCA 59.178 33.333 0.00 0.00 0.00 3.27
3493 3641 8.197988 TCGGTTTATTTTTCTAAGCATCTCTC 57.802 34.615 0.00 0.00 0.00 3.20
3494 3642 7.824779 ACTCGGTTTATTTTTCTAAGCATCTCT 59.175 33.333 0.00 0.00 0.00 3.10
3495 3643 7.975750 ACTCGGTTTATTTTTCTAAGCATCTC 58.024 34.615 0.00 0.00 0.00 2.75
3496 3644 7.923414 ACTCGGTTTATTTTTCTAAGCATCT 57.077 32.000 0.00 0.00 0.00 2.90
3497 3645 8.451748 AGAACTCGGTTTATTTTTCTAAGCATC 58.548 33.333 0.00 0.00 0.00 3.91
3498 3646 8.336801 AGAACTCGGTTTATTTTTCTAAGCAT 57.663 30.769 0.00 0.00 0.00 3.79
3499 3647 7.739498 AGAACTCGGTTTATTTTTCTAAGCA 57.261 32.000 0.00 0.00 0.00 3.91
3500 3648 9.459640 AAAAGAACTCGGTTTATTTTTCTAAGC 57.540 29.630 0.00 0.00 27.99 3.09
3508 3656 8.498358 CGGTACTTAAAAGAACTCGGTTTATTT 58.502 33.333 0.00 0.00 0.00 1.40
3509 3657 7.118245 CCGGTACTTAAAAGAACTCGGTTTATT 59.882 37.037 0.00 0.00 0.00 1.40
3510 3658 6.591448 CCGGTACTTAAAAGAACTCGGTTTAT 59.409 38.462 0.00 0.00 0.00 1.40
3511 3659 5.925969 CCGGTACTTAAAAGAACTCGGTTTA 59.074 40.000 0.00 0.00 0.00 2.01
3512 3660 4.751600 CCGGTACTTAAAAGAACTCGGTTT 59.248 41.667 0.00 0.00 0.00 3.27
3513 3661 4.202253 ACCGGTACTTAAAAGAACTCGGTT 60.202 41.667 4.49 0.00 44.58 4.44
3514 3662 3.321968 ACCGGTACTTAAAAGAACTCGGT 59.678 43.478 4.49 13.64 42.58 4.69
3515 3663 3.676646 CACCGGTACTTAAAAGAACTCGG 59.323 47.826 6.87 0.00 40.58 4.63
3516 3664 3.122445 GCACCGGTACTTAAAAGAACTCG 59.878 47.826 6.87 0.00 0.00 4.18
3517 3665 3.434641 GGCACCGGTACTTAAAAGAACTC 59.565 47.826 6.87 0.00 0.00 3.01
3518 3666 3.072038 AGGCACCGGTACTTAAAAGAACT 59.928 43.478 6.87 0.00 0.00 3.01
3519 3667 3.405831 AGGCACCGGTACTTAAAAGAAC 58.594 45.455 6.87 0.00 0.00 3.01
3520 3668 3.775261 AGGCACCGGTACTTAAAAGAA 57.225 42.857 6.87 0.00 0.00 2.52
3521 3669 5.425196 AATAGGCACCGGTACTTAAAAGA 57.575 39.130 6.87 0.00 0.00 2.52
3522 3670 5.878669 AGAAATAGGCACCGGTACTTAAAAG 59.121 40.000 6.87 0.00 0.00 2.27
3523 3671 5.807909 AGAAATAGGCACCGGTACTTAAAA 58.192 37.500 6.87 0.00 0.00 1.52
3524 3672 5.425196 AGAAATAGGCACCGGTACTTAAA 57.575 39.130 6.87 0.00 0.00 1.52
3525 3673 5.421693 TGTAGAAATAGGCACCGGTACTTAA 59.578 40.000 6.87 0.00 0.00 1.85
3526 3674 4.955450 TGTAGAAATAGGCACCGGTACTTA 59.045 41.667 6.87 1.88 0.00 2.24
3527 3675 3.770933 TGTAGAAATAGGCACCGGTACTT 59.229 43.478 6.87 0.00 0.00 2.24
3528 3676 3.131755 GTGTAGAAATAGGCACCGGTACT 59.868 47.826 6.87 11.85 0.00 2.73
3529 3677 3.451526 GTGTAGAAATAGGCACCGGTAC 58.548 50.000 6.87 0.00 0.00 3.34
3530 3678 2.099592 CGTGTAGAAATAGGCACCGGTA 59.900 50.000 6.87 0.00 0.00 4.02
3531 3679 1.134907 CGTGTAGAAATAGGCACCGGT 60.135 52.381 0.00 0.00 0.00 5.28
3532 3680 1.135527 TCGTGTAGAAATAGGCACCGG 59.864 52.381 0.00 0.00 0.00 5.28
3533 3681 2.098607 TCTCGTGTAGAAATAGGCACCG 59.901 50.000 0.00 0.00 0.00 4.94
3534 3682 3.380637 TCTCTCGTGTAGAAATAGGCACC 59.619 47.826 0.00 0.00 32.46 5.01
3535 3683 4.352887 GTCTCTCGTGTAGAAATAGGCAC 58.647 47.826 0.00 0.00 32.46 5.01
3536 3684 3.064958 CGTCTCTCGTGTAGAAATAGGCA 59.935 47.826 0.00 0.00 32.46 4.75
3537 3685 3.619729 CGTCTCTCGTGTAGAAATAGGC 58.380 50.000 0.00 0.00 32.46 3.93
3538 3686 3.312973 AGCGTCTCTCGTGTAGAAATAGG 59.687 47.826 0.00 0.00 42.13 2.57
3539 3687 4.539509 AGCGTCTCTCGTGTAGAAATAG 57.460 45.455 0.00 0.00 42.13 1.73
3540 3688 4.959596 AAGCGTCTCTCGTGTAGAAATA 57.040 40.909 0.00 0.00 42.13 1.40
3541 3689 3.851976 AAGCGTCTCTCGTGTAGAAAT 57.148 42.857 0.00 0.00 42.13 2.17
3542 3690 3.750130 ACTAAGCGTCTCTCGTGTAGAAA 59.250 43.478 0.00 0.00 42.13 2.52
3543 3691 3.332919 ACTAAGCGTCTCTCGTGTAGAA 58.667 45.455 0.00 0.00 42.13 2.10
3544 3692 2.969990 ACTAAGCGTCTCTCGTGTAGA 58.030 47.619 0.00 0.00 42.13 2.59
3545 3693 3.743567 AACTAAGCGTCTCTCGTGTAG 57.256 47.619 0.00 0.00 42.13 2.74
3546 3694 5.213913 CTTAACTAAGCGTCTCTCGTGTA 57.786 43.478 0.00 0.00 42.13 2.90
3547 3695 4.080969 CTTAACTAAGCGTCTCTCGTGT 57.919 45.455 0.00 0.00 42.13 4.49
3559 3707 8.906636 TTGTACAAGATAGACGCTTAACTAAG 57.093 34.615 3.59 0.00 36.40 2.18
3560 3708 9.865321 ATTTGTACAAGATAGACGCTTAACTAA 57.135 29.630 8.56 0.00 0.00 2.24
3562 3710 9.865321 TTATTTGTACAAGATAGACGCTTAACT 57.135 29.630 8.56 0.00 0.00 2.24
3564 3712 8.814235 GCTTATTTGTACAAGATAGACGCTTAA 58.186 33.333 8.56 0.00 0.00 1.85
3565 3713 7.977293 TGCTTATTTGTACAAGATAGACGCTTA 59.023 33.333 8.56 0.00 0.00 3.09
3566 3714 6.816640 TGCTTATTTGTACAAGATAGACGCTT 59.183 34.615 8.56 0.00 0.00 4.68
3567 3715 6.338146 TGCTTATTTGTACAAGATAGACGCT 58.662 36.000 8.56 0.00 0.00 5.07
3568 3716 6.583912 TGCTTATTTGTACAAGATAGACGC 57.416 37.500 8.56 12.19 0.00 5.19
3569 3717 7.358435 CCGATGCTTATTTGTACAAGATAGACG 60.358 40.741 8.56 9.10 0.00 4.18
3570 3718 7.438459 ACCGATGCTTATTTGTACAAGATAGAC 59.562 37.037 8.56 6.74 0.00 2.59
3571 3719 7.438160 CACCGATGCTTATTTGTACAAGATAGA 59.562 37.037 8.56 0.00 0.00 1.98
3572 3720 7.567571 CACCGATGCTTATTTGTACAAGATAG 58.432 38.462 8.56 8.20 0.00 2.08
3573 3721 7.477144 CACCGATGCTTATTTGTACAAGATA 57.523 36.000 8.56 7.27 0.00 1.98
3574 3722 6.363577 CACCGATGCTTATTTGTACAAGAT 57.636 37.500 8.56 8.17 0.00 2.40
3575 3723 5.794687 CACCGATGCTTATTTGTACAAGA 57.205 39.130 8.56 0.90 0.00 3.02
3590 3738 4.475944 CAGGTTTTTCTTAAGCACCGATG 58.524 43.478 0.00 0.00 32.32 3.84
3591 3739 3.506067 CCAGGTTTTTCTTAAGCACCGAT 59.494 43.478 0.00 0.00 32.32 4.18
3592 3740 2.882137 CCAGGTTTTTCTTAAGCACCGA 59.118 45.455 0.00 0.00 32.32 4.69
3593 3741 2.621526 ACCAGGTTTTTCTTAAGCACCG 59.378 45.455 0.00 0.00 32.32 4.94
3594 3742 4.665833 AACCAGGTTTTTCTTAAGCACC 57.334 40.909 0.00 1.55 0.00 5.01
3595 3743 8.657074 AAATAAACCAGGTTTTTCTTAAGCAC 57.343 30.769 22.95 0.00 37.01 4.40
3596 3744 8.700973 AGAAATAAACCAGGTTTTTCTTAAGCA 58.299 29.630 22.95 1.81 32.25 3.91
3597 3745 9.193133 GAGAAATAAACCAGGTTTTTCTTAAGC 57.807 33.333 24.08 13.23 34.68 3.09
3602 3750 8.577296 GCTTAGAGAAATAAACCAGGTTTTTCT 58.423 33.333 23.72 23.72 36.16 2.52
3603 3751 8.357402 TGCTTAGAGAAATAAACCAGGTTTTTC 58.643 33.333 22.95 19.50 37.01 2.29
3604 3752 8.141909 GTGCTTAGAGAAATAAACCAGGTTTTT 58.858 33.333 22.95 12.48 37.01 1.94
3605 3753 7.255836 GGTGCTTAGAGAAATAAACCAGGTTTT 60.256 37.037 22.95 5.09 37.01 2.43
3606 3754 6.208797 GGTGCTTAGAGAAATAAACCAGGTTT 59.791 38.462 21.55 21.55 39.24 3.27
3607 3755 5.710567 GGTGCTTAGAGAAATAAACCAGGTT 59.289 40.000 0.00 0.00 0.00 3.50
3608 3756 5.014228 AGGTGCTTAGAGAAATAAACCAGGT 59.986 40.000 0.00 0.00 0.00 4.00
3609 3757 5.501156 AGGTGCTTAGAGAAATAAACCAGG 58.499 41.667 0.00 0.00 0.00 4.45
3610 3758 6.623767 GCAAGGTGCTTAGAGAAATAAACCAG 60.624 42.308 0.00 0.00 40.96 4.00
3611 3759 5.183140 GCAAGGTGCTTAGAGAAATAAACCA 59.817 40.000 0.00 0.00 40.96 3.67
3612 3760 5.183140 TGCAAGGTGCTTAGAGAAATAAACC 59.817 40.000 1.43 0.00 45.31 3.27
3613 3761 6.254281 TGCAAGGTGCTTAGAGAAATAAAC 57.746 37.500 1.43 0.00 45.31 2.01
3614 3762 7.039784 ACAATGCAAGGTGCTTAGAGAAATAAA 60.040 33.333 0.00 0.00 45.31 1.40
3615 3763 6.434028 ACAATGCAAGGTGCTTAGAGAAATAA 59.566 34.615 0.00 0.00 45.31 1.40
3616 3764 5.945784 ACAATGCAAGGTGCTTAGAGAAATA 59.054 36.000 0.00 0.00 45.31 1.40
3617 3765 4.768968 ACAATGCAAGGTGCTTAGAGAAAT 59.231 37.500 0.00 0.00 45.31 2.17
3618 3766 4.144297 ACAATGCAAGGTGCTTAGAGAAA 58.856 39.130 0.00 0.00 45.31 2.52
3619 3767 3.754965 ACAATGCAAGGTGCTTAGAGAA 58.245 40.909 0.00 0.00 45.31 2.87
3620 3768 3.423539 ACAATGCAAGGTGCTTAGAGA 57.576 42.857 0.00 0.00 45.31 3.10
3621 3769 3.062639 CGTACAATGCAAGGTGCTTAGAG 59.937 47.826 0.00 0.00 45.31 2.43
3622 3770 3.000041 CGTACAATGCAAGGTGCTTAGA 59.000 45.455 0.00 0.00 45.31 2.10
3623 3771 3.000041 TCGTACAATGCAAGGTGCTTAG 59.000 45.455 0.00 0.00 45.31 2.18
3624 3772 3.046968 TCGTACAATGCAAGGTGCTTA 57.953 42.857 0.00 0.00 45.31 3.09
3625 3773 1.890876 TCGTACAATGCAAGGTGCTT 58.109 45.000 0.00 0.00 45.31 3.91
3626 3774 1.806542 CTTCGTACAATGCAAGGTGCT 59.193 47.619 0.00 0.00 45.31 4.40
3627 3775 1.729149 GCTTCGTACAATGCAAGGTGC 60.729 52.381 0.00 0.00 45.29 5.01
3628 3776 1.135689 GGCTTCGTACAATGCAAGGTG 60.136 52.381 0.00 0.00 0.00 4.00
3629 3777 1.165270 GGCTTCGTACAATGCAAGGT 58.835 50.000 0.00 0.00 0.00 3.50
3630 3778 1.453155 AGGCTTCGTACAATGCAAGG 58.547 50.000 0.00 0.00 0.00 3.61
3631 3779 3.684788 ACTTAGGCTTCGTACAATGCAAG 59.315 43.478 0.00 0.00 0.00 4.01
3632 3780 3.670625 ACTTAGGCTTCGTACAATGCAA 58.329 40.909 0.00 0.00 0.00 4.08
3633 3781 3.328382 ACTTAGGCTTCGTACAATGCA 57.672 42.857 0.00 0.00 0.00 3.96
3634 3782 3.245519 GCTACTTAGGCTTCGTACAATGC 59.754 47.826 0.00 0.00 0.00 3.56
3635 3783 4.430007 TGCTACTTAGGCTTCGTACAATG 58.570 43.478 0.00 0.00 0.00 2.82
3636 3784 4.730949 TGCTACTTAGGCTTCGTACAAT 57.269 40.909 0.00 0.00 0.00 2.71
3637 3785 4.441079 GGATGCTACTTAGGCTTCGTACAA 60.441 45.833 0.00 0.00 35.56 2.41
3638 3786 3.067742 GGATGCTACTTAGGCTTCGTACA 59.932 47.826 0.00 0.00 35.56 2.90
3639 3787 3.067742 TGGATGCTACTTAGGCTTCGTAC 59.932 47.826 0.00 0.00 35.56 3.67
3640 3788 3.293337 TGGATGCTACTTAGGCTTCGTA 58.707 45.455 0.00 0.00 35.56 3.43
3641 3789 2.108168 TGGATGCTACTTAGGCTTCGT 58.892 47.619 0.00 0.00 35.56 3.85
3642 3790 2.866762 GTTGGATGCTACTTAGGCTTCG 59.133 50.000 0.00 0.00 35.56 3.79
3643 3791 4.123506 GAGTTGGATGCTACTTAGGCTTC 58.876 47.826 2.49 0.00 34.49 3.86
3644 3792 3.430929 CGAGTTGGATGCTACTTAGGCTT 60.431 47.826 2.49 0.00 0.00 4.35
3645 3793 2.101582 CGAGTTGGATGCTACTTAGGCT 59.898 50.000 2.49 0.00 0.00 4.58
3646 3794 2.474816 CGAGTTGGATGCTACTTAGGC 58.525 52.381 2.49 0.00 0.00 3.93
3647 3795 2.159099 TGCGAGTTGGATGCTACTTAGG 60.159 50.000 2.49 0.00 0.00 2.69
3648 3796 3.119291 CTGCGAGTTGGATGCTACTTAG 58.881 50.000 2.49 2.39 0.00 2.18
3649 3797 2.758423 TCTGCGAGTTGGATGCTACTTA 59.242 45.455 2.49 0.00 0.00 2.24
3675 3823 2.111756 CTGTTTCTTGCGCAGTGAAAC 58.888 47.619 36.61 36.61 45.51 2.78
3678 3826 1.378531 AACTGTTTCTTGCGCAGTGA 58.621 45.000 11.31 10.80 41.94 3.41
3679 3827 2.639751 GTAACTGTTTCTTGCGCAGTG 58.360 47.619 11.31 8.27 41.94 3.66
3680 3828 1.260561 CGTAACTGTTTCTTGCGCAGT 59.739 47.619 11.31 0.00 44.31 4.40
3681 3829 1.525197 TCGTAACTGTTTCTTGCGCAG 59.475 47.619 11.31 5.25 36.41 5.18
3682 3830 1.573026 TCGTAACTGTTTCTTGCGCA 58.427 45.000 5.66 5.66 0.00 6.09
3683 3831 2.656192 TTCGTAACTGTTTCTTGCGC 57.344 45.000 0.00 0.00 0.00 6.09
3695 3843 4.804665 GTCTCCTCTGCCTTAATTCGTAAC 59.195 45.833 0.00 0.00 0.00 2.50
3697 3845 3.066342 CGTCTCCTCTGCCTTAATTCGTA 59.934 47.826 0.00 0.00 0.00 3.43
3733 3881 0.543749 ATGTACTCCTTGGCTCAGGC 59.456 55.000 0.00 0.00 33.35 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.