Multiple sequence alignment - TraesCS2B01G216600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G216600 chr2B 100.000 4855 0 0 618 5472 202738985 202743839 0.000000e+00 8966
1 TraesCS2B01G216600 chr2B 100.000 404 0 0 1 404 202738368 202738771 0.000000e+00 747
2 TraesCS2B01G216600 chr2D 96.096 4893 132 29 618 5472 144992137 144997008 0.000000e+00 7923
3 TraesCS2B01G216600 chr2D 91.206 398 4 12 19 404 144991727 144992105 3.780000e-141 512
4 TraesCS2B01G216600 chr2A 95.352 4884 156 29 623 5472 156764256 156759410 0.000000e+00 7696
5 TraesCS2B01G216600 chr2A 90.746 389 11 12 22 404 156764659 156764290 3.810000e-136 496
6 TraesCS2B01G216600 chr4D 98.333 60 1 0 1575 1634 92321394 92321453 7.500000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G216600 chr2B 202738368 202743839 5471 False 4856.5 8966 100.000 1 5472 2 chr2B.!!$F1 5471
1 TraesCS2B01G216600 chr2D 144991727 144997008 5281 False 4217.5 7923 93.651 19 5472 2 chr2D.!!$F1 5453
2 TraesCS2B01G216600 chr2A 156759410 156764659 5249 True 4096.0 7696 93.049 22 5472 2 chr2A.!!$R1 5450

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 370 0.749454 CTCCCTTTCCCATCGCCTTG 60.749 60.0 0.0 0.0 0.00 3.61 F
1253 1279 0.254178 TGCCATTCTTGCTCCTCCTC 59.746 55.0 0.0 0.0 0.00 3.71 F
2203 2230 0.537653 GAGGTCCTACTTCTGCCCAC 59.462 60.0 0.0 0.0 0.00 4.61 F
2906 2935 0.314935 CACAACATTGGGTGCTGTCC 59.685 55.0 0.0 0.0 35.02 4.02 F
3392 3425 2.543777 TTGGAAAAGAGGGTGAGTCG 57.456 50.0 0.0 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2278 2305 0.255890 GGTTGCTCCTTCCATAGCCA 59.744 55.0 0.00 0.00 37.97 4.75 R
2682 2711 0.731417 GACATGCAGCTGTGATGGTC 59.269 55.0 23.60 16.71 0.00 4.02 R
4178 4242 0.383949 ATTTTTGTCACGCGTGCCTT 59.616 45.0 33.63 11.10 0.00 4.35 R
4184 4248 1.510007 GCGACTATTTTTGTCACGCG 58.490 50.0 3.53 3.53 35.78 6.01 R
4802 4870 2.158755 ACAGCATCCCTGGTATACAAGC 60.159 50.0 5.01 0.00 46.14 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 55 2.689691 GCACCTGCCCCCTGGATAA 61.690 63.158 0.00 0.00 34.43 1.75
76 82 1.668151 GATTATCCGCGTCAGCCCC 60.668 63.158 4.92 0.00 41.18 5.80
77 83 2.377628 GATTATCCGCGTCAGCCCCA 62.378 60.000 4.92 0.00 41.18 4.96
355 367 2.193248 CCTCCCTTTCCCATCGCC 59.807 66.667 0.00 0.00 0.00 5.54
356 368 2.378634 CCTCCCTTTCCCATCGCCT 61.379 63.158 0.00 0.00 0.00 5.52
357 369 1.609783 CTCCCTTTCCCATCGCCTT 59.390 57.895 0.00 0.00 0.00 4.35
358 370 0.749454 CTCCCTTTCCCATCGCCTTG 60.749 60.000 0.00 0.00 0.00 3.61
359 371 2.418083 CCCTTTCCCATCGCCTTGC 61.418 63.158 0.00 0.00 0.00 4.01
360 372 1.379044 CCTTTCCCATCGCCTTGCT 60.379 57.895 0.00 0.00 0.00 3.91
361 373 1.379642 CCTTTCCCATCGCCTTGCTC 61.380 60.000 0.00 0.00 0.00 4.26
362 374 1.378514 TTTCCCATCGCCTTGCTCC 60.379 57.895 0.00 0.00 0.00 4.70
363 375 2.837031 TTTCCCATCGCCTTGCTCCC 62.837 60.000 0.00 0.00 0.00 4.30
855 873 1.080161 GATCTAGCTAGCCCTGCGC 60.080 63.158 16.35 0.00 35.28 6.09
856 874 2.810903 GATCTAGCTAGCCCTGCGCG 62.811 65.000 16.35 0.00 44.76 6.86
1164 1190 1.103803 TCGGCTTCATAGTCTTCGCT 58.896 50.000 0.00 0.00 0.00 4.93
1170 1196 1.474330 TCATAGTCTTCGCTGAGGCA 58.526 50.000 0.00 0.00 38.60 4.75
1230 1256 1.539827 GATGGCCGCATGGTAATTACC 59.460 52.381 25.22 25.22 46.62 2.85
1250 1276 1.948145 CTGATGCCATTCTTGCTCCTC 59.052 52.381 0.00 0.00 0.00 3.71
1253 1279 0.254178 TGCCATTCTTGCTCCTCCTC 59.746 55.000 0.00 0.00 0.00 3.71
1290 1317 2.029470 TGTGCATTTCGTTGGGAATTCC 60.029 45.455 16.74 16.74 33.85 3.01
2203 2230 0.537653 GAGGTCCTACTTCTGCCCAC 59.462 60.000 0.00 0.00 0.00 4.61
2266 2293 1.393603 GGGCTGGAGATAACTTTGGC 58.606 55.000 0.00 0.00 0.00 4.52
2278 2305 1.898574 CTTTGGCTTGCCGTCTGGT 60.899 57.895 7.18 0.00 37.67 4.00
2443 2470 9.145865 GAGATCGATATTCCTCCTTTTGATAAC 57.854 37.037 0.00 0.00 0.00 1.89
2638 2666 7.617041 ACTCAGCTATTCAAAACATAGAACC 57.383 36.000 0.00 0.00 0.00 3.62
2682 2711 9.799106 ATTGATCTACCCATTCAGTTTATTAGG 57.201 33.333 0.00 0.00 0.00 2.69
2688 2717 6.365520 ACCCATTCAGTTTATTAGGACCATC 58.634 40.000 0.00 0.00 0.00 3.51
2692 2721 7.012704 CCATTCAGTTTATTAGGACCATCACAG 59.987 40.741 0.00 0.00 0.00 3.66
2786 2815 8.614469 GCTAGAGCATAATCAATAGACCTTTT 57.386 34.615 0.00 0.00 41.59 2.27
2811 2840 4.263905 TGGGGCTTACATCAGATTTGACTT 60.264 41.667 0.00 0.00 35.83 3.01
2839 2868 5.246981 TCAGTGGATTGAACTTGAAGGAT 57.753 39.130 0.00 0.00 0.00 3.24
2863 2892 9.128107 GATTTGTCTTGTAATTATGTTGTGGTG 57.872 33.333 0.00 0.00 0.00 4.17
2870 2899 9.391006 CTTGTAATTATGTTGTGGTGGTATACT 57.609 33.333 2.25 0.00 0.00 2.12
2906 2935 0.314935 CACAACATTGGGTGCTGTCC 59.685 55.000 0.00 0.00 35.02 4.02
2956 2985 3.476552 TCGAGAGCAACAACTTTTGGAT 58.523 40.909 0.00 0.00 34.12 3.41
3000 3029 5.869579 TGAATAGATCAAATAGGGAGCACC 58.130 41.667 0.00 0.00 34.30 5.01
3089 3118 4.024133 GGGACCAATGATTTGTTTTGCAAC 60.024 41.667 0.00 0.00 36.72 4.17
3111 3140 6.952773 ACTTTAGTTGTGCCAAGTAAATCA 57.047 33.333 19.48 6.73 0.00 2.57
3390 3423 7.855784 AATAAAATTGGAAAAGAGGGTGAGT 57.144 32.000 0.00 0.00 0.00 3.41
3392 3425 2.543777 TTGGAAAAGAGGGTGAGTCG 57.456 50.000 0.00 0.00 0.00 4.18
3464 3499 5.869350 AGCAAATCACTTGTCTAAATACGC 58.131 37.500 0.00 0.00 37.36 4.42
3465 3500 5.411361 AGCAAATCACTTGTCTAAATACGCA 59.589 36.000 0.00 0.00 37.36 5.24
3519 3561 8.314021 TGAAGTATGTATTGACTCATGTCTGTT 58.686 33.333 0.00 0.00 43.29 3.16
3550 3592 7.918076 TGGACATATGTTAGTTCTTCCTTTCT 58.082 34.615 10.30 0.00 0.00 2.52
3603 3645 5.939883 CCATTTTCTGTCAGGACTGTTATCA 59.060 40.000 0.00 0.00 0.00 2.15
3654 3696 7.170320 GTCATTTGTTTCTGTGCTTGATTGATT 59.830 33.333 0.00 0.00 0.00 2.57
3719 3763 9.289782 GCTAAGATAACCCATTGAATGATAGTT 57.710 33.333 6.76 9.54 0.00 2.24
3787 3848 5.330455 TGTGTTTACAATTCTGGCAACAA 57.670 34.783 0.00 0.00 39.40 2.83
3949 4012 2.877786 TGAAAATGCGCTGAGTCAGAAA 59.122 40.909 24.55 8.24 32.44 2.52
3961 4024 6.237942 CGCTGAGTCAGAAATGTTACATAAGG 60.238 42.308 24.55 0.00 32.44 2.69
4096 4160 4.999950 CCCATTTCCTGTGTAGATCATAGC 59.000 45.833 0.00 0.00 34.58 2.97
4108 4172 5.991606 TGTAGATCATAGCTAAATGTGGTGC 59.008 40.000 0.00 0.00 0.00 5.01
4143 4207 6.935741 GTCTCGAGGACATGAGCTATATAT 57.064 41.667 13.56 0.00 43.94 0.86
4148 4212 7.797062 TCGAGGACATGAGCTATATATAGTCT 58.203 38.462 18.81 15.83 32.96 3.24
4149 4213 7.713073 TCGAGGACATGAGCTATATATAGTCTG 59.287 40.741 18.81 13.44 32.96 3.51
4151 4215 8.746052 AGGACATGAGCTATATATAGTCTGTC 57.254 38.462 18.81 20.79 32.96 3.51
4152 4216 7.497579 AGGACATGAGCTATATATAGTCTGTCG 59.502 40.741 18.81 8.11 31.40 4.35
4153 4217 7.254966 GGACATGAGCTATATATAGTCTGTCGG 60.255 44.444 18.81 10.42 31.40 4.79
4157 4221 5.686753 AGCTATATATAGTCTGTCGGGGAG 58.313 45.833 18.81 0.00 32.96 4.30
4178 4242 8.157476 GGGGAGATTTACTTTTGCTATCTGATA 58.843 37.037 0.00 0.00 0.00 2.15
4184 4248 7.553881 TTACTTTTGCTATCTGATAAGGCAC 57.446 36.000 10.16 0.00 32.47 5.01
4194 4258 0.793861 GATAAGGCACGCGTGACAAA 59.206 50.000 43.29 31.40 42.32 2.83
4196 4260 1.015109 TAAGGCACGCGTGACAAAAA 58.985 45.000 43.29 24.03 42.32 1.94
4197 4261 0.383949 AAGGCACGCGTGACAAAAAT 59.616 45.000 43.29 22.88 42.32 1.82
4216 4280 7.962918 ACAAAAATAGTCGCTCACATGTATTTC 59.037 33.333 0.00 0.00 0.00 2.17
4217 4281 7.609760 AAAATAGTCGCTCACATGTATTTCA 57.390 32.000 0.00 0.00 0.00 2.69
4266 4330 9.974980 TGTTTGGGAATGAAAATACTTAAGTTC 57.025 29.630 14.49 5.76 0.00 3.01
4321 4387 5.952347 ACTAGTCAACACATGATCTGAGGTA 59.048 40.000 0.00 0.00 40.97 3.08
4326 4392 5.187576 TCAACACATGATCTGAGGTACATCA 59.812 40.000 10.21 10.21 31.50 3.07
4329 4395 7.550597 ACACATGATCTGAGGTACATCATAT 57.449 36.000 11.14 9.41 30.16 1.78
4330 4396 7.384477 ACACATGATCTGAGGTACATCATATG 58.616 38.462 11.14 14.34 32.18 1.78
4371 4437 2.362077 GTCTGTTTGTTGTCAATGCCCT 59.638 45.455 0.00 0.00 33.32 5.19
4449 4517 3.507233 TCTGATCAAGATTTGTTGCACCC 59.493 43.478 0.00 0.00 0.00 4.61
4991 5061 7.605410 AATAAAGTCACCCAAAGTACATACG 57.395 36.000 0.00 0.00 0.00 3.06
5003 5085 6.128282 CCAAAGTACATACGATGTTGCTTCTT 60.128 38.462 5.94 3.00 41.63 2.52
5004 5086 6.648725 AAGTACATACGATGTTGCTTCTTC 57.351 37.500 5.94 0.00 41.63 2.87
5005 5087 5.967088 AGTACATACGATGTTGCTTCTTCT 58.033 37.500 5.94 0.00 41.63 2.85
5006 5088 6.398918 AGTACATACGATGTTGCTTCTTCTT 58.601 36.000 5.94 0.00 41.63 2.52
5007 5089 5.786401 ACATACGATGTTGCTTCTTCTTC 57.214 39.130 0.00 0.00 41.63 2.87
5008 5090 5.482908 ACATACGATGTTGCTTCTTCTTCT 58.517 37.500 0.00 0.00 41.63 2.85
5009 5091 5.934625 ACATACGATGTTGCTTCTTCTTCTT 59.065 36.000 0.00 0.00 41.63 2.52
5010 5092 4.739046 ACGATGTTGCTTCTTCTTCTTG 57.261 40.909 0.00 0.00 0.00 3.02
5011 5093 4.130118 ACGATGTTGCTTCTTCTTCTTGT 58.870 39.130 0.00 0.00 0.00 3.16
5012 5094 4.576463 ACGATGTTGCTTCTTCTTCTTGTT 59.424 37.500 0.00 0.00 0.00 2.83
5013 5095 4.908156 CGATGTTGCTTCTTCTTCTTGTTG 59.092 41.667 0.00 0.00 0.00 3.33
5014 5096 5.504665 CGATGTTGCTTCTTCTTCTTGTTGT 60.505 40.000 0.00 0.00 0.00 3.32
5040 5122 7.615403 TCTTCTTCTGTGTCTATTTGTATGCT 58.385 34.615 0.00 0.00 0.00 3.79
5058 5140 7.158697 TGTATGCTGTTGCTAGTTTCTTCTTA 58.841 34.615 0.00 0.00 40.48 2.10
5318 5406 5.548446 ACTTTCCCTCCCTCTATAAATAGCC 59.452 44.000 0.00 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
246 257 1.225983 CTCGCTCCTCTCTCTCCCA 59.774 63.158 0.00 0.00 0.00 4.37
254 265 0.036858 GAACCTTTGCTCGCTCCTCT 60.037 55.000 0.00 0.00 0.00 3.69
255 266 1.355066 CGAACCTTTGCTCGCTCCTC 61.355 60.000 0.00 0.00 0.00 3.71
1137 1163 3.750373 TATGAAGCCGAAGCCCCGC 62.750 63.158 0.00 0.00 41.25 6.13
1140 1166 0.466124 AGACTATGAAGCCGAAGCCC 59.534 55.000 0.00 0.00 41.25 5.19
1230 1256 1.948145 GAGGAGCAAGAATGGCATCAG 59.052 52.381 0.00 0.00 37.68 2.90
1250 1276 3.317711 CACATGACTAGACTAGCAGGAGG 59.682 52.174 18.78 10.53 0.00 4.30
1253 1279 2.428530 TGCACATGACTAGACTAGCAGG 59.571 50.000 9.52 11.92 0.00 4.85
1290 1317 3.399330 ACCACAGACAGGATTACAAACG 58.601 45.455 0.00 0.00 0.00 3.60
1339 1366 2.789213 TCGACCTGAATTGAATTGGCA 58.211 42.857 0.00 0.00 0.00 4.92
2203 2230 1.406539 CTTGAAATGCTTCCCATCCCG 59.593 52.381 0.00 0.00 31.43 5.14
2278 2305 0.255890 GGTTGCTCCTTCCATAGCCA 59.744 55.000 0.00 0.00 37.97 4.75
2443 2470 5.714047 TCTGGATCGATATTTCCAAGATCG 58.286 41.667 6.91 7.09 41.36 3.69
2682 2711 0.731417 GACATGCAGCTGTGATGGTC 59.269 55.000 23.60 16.71 0.00 4.02
2786 2815 4.462483 GTCAAATCTGATGTAAGCCCCAAA 59.538 41.667 0.00 0.00 33.05 3.28
2811 2840 6.358974 TCAAGTTCAATCCACTGATCTACA 57.641 37.500 0.00 0.00 0.00 2.74
2839 2868 7.068839 ACCACCACAACATAATTACAAGACAAA 59.931 33.333 0.00 0.00 0.00 2.83
2855 2884 7.859325 AATGTGATAAGTATACCACCACAAC 57.141 36.000 16.51 3.25 36.76 3.32
2870 2899 9.676195 CAATGTTGTGTCAGTTAAATGTGATAA 57.324 29.630 2.43 0.00 0.00 1.75
2956 2985 6.702716 TCATTATCATTCAAAGCTGATGCA 57.297 33.333 0.00 0.00 42.74 3.96
3000 3029 2.033801 GTCAATGGAATGGATGAAGGCG 59.966 50.000 0.00 0.00 0.00 5.52
3111 3140 4.957954 ACATCCTACACCAATCATTGCATT 59.042 37.500 0.00 0.00 0.00 3.56
3390 3423 7.144722 ACAAAATGTTCTCATAATTGCTCGA 57.855 32.000 0.00 0.00 35.90 4.04
3392 3425 8.749499 GCATACAAAATGTTCTCATAATTGCTC 58.251 33.333 0.00 0.00 35.90 4.26
3464 3499 6.258230 TGCAAGTTCCAAACTGATTCTATG 57.742 37.500 0.00 0.00 41.91 2.23
3465 3500 7.472334 AATGCAAGTTCCAAACTGATTCTAT 57.528 32.000 0.00 0.00 41.91 1.98
3519 3561 7.419057 GGAAGAACTAACATATGTCCATCCTCA 60.419 40.741 9.23 0.00 0.00 3.86
3568 3610 9.231297 TCCTGACAGAAAATGGTAATTTAGAAG 57.769 33.333 3.32 0.00 34.84 2.85
3603 3645 7.069455 ACAGTAGCTTTGGAAATAAAAACCACT 59.931 33.333 0.00 0.00 33.20 4.00
3654 3696 8.278729 TGCAAATTCATTCATGTGTATCTACA 57.721 30.769 0.00 0.00 34.63 2.74
3756 3809 7.298122 CCAGAATTGTAAACACATACAGACAC 58.702 38.462 0.00 0.00 37.13 3.67
3773 3834 6.029346 AGGATTAACTTGTTGCCAGAATTG 57.971 37.500 0.00 0.00 0.00 2.32
3949 4012 9.959721 AAAGATCAACACTACCTTATGTAACAT 57.040 29.630 0.00 0.00 0.00 2.71
3961 4024 8.480853 GCATCGAAGTATAAAGATCAACACTAC 58.519 37.037 0.00 0.00 0.00 2.73
3982 4045 1.746615 CCCAGTCCTTGGTGCATCG 60.747 63.158 0.00 0.00 46.25 3.84
4096 4160 1.474077 GAGCCCTTGCACCACATTTAG 59.526 52.381 0.00 0.00 41.13 1.85
4141 4205 5.950023 AGTAAATCTCCCCGACAGACTATA 58.050 41.667 0.00 0.00 0.00 1.31
4142 4206 4.805744 AGTAAATCTCCCCGACAGACTAT 58.194 43.478 0.00 0.00 0.00 2.12
4143 4207 4.246712 AGTAAATCTCCCCGACAGACTA 57.753 45.455 0.00 0.00 0.00 2.59
4144 4208 3.103080 AGTAAATCTCCCCGACAGACT 57.897 47.619 0.00 0.00 0.00 3.24
4148 4212 3.078837 GCAAAAGTAAATCTCCCCGACA 58.921 45.455 0.00 0.00 0.00 4.35
4149 4213 3.344515 AGCAAAAGTAAATCTCCCCGAC 58.655 45.455 0.00 0.00 0.00 4.79
4151 4215 5.237344 CAGATAGCAAAAGTAAATCTCCCCG 59.763 44.000 0.00 0.00 0.00 5.73
4152 4216 6.357367 TCAGATAGCAAAAGTAAATCTCCCC 58.643 40.000 0.00 0.00 0.00 4.81
4153 4217 9.561069 TTATCAGATAGCAAAAGTAAATCTCCC 57.439 33.333 0.00 0.00 0.00 4.30
4157 4221 8.840321 TGCCTTATCAGATAGCAAAAGTAAATC 58.160 33.333 2.55 0.00 0.00 2.17
4178 4242 0.383949 ATTTTTGTCACGCGTGCCTT 59.616 45.000 33.63 11.10 0.00 4.35
4184 4248 1.510007 GCGACTATTTTTGTCACGCG 58.490 50.000 3.53 3.53 35.78 6.01
4194 4258 7.792374 ATGAAATACATGTGAGCGACTATTT 57.208 32.000 9.11 3.60 37.87 1.40
4196 4260 7.926018 TGTAATGAAATACATGTGAGCGACTAT 59.074 33.333 9.11 0.00 39.39 2.12
4197 4261 7.262048 TGTAATGAAATACATGTGAGCGACTA 58.738 34.615 9.11 0.00 39.39 2.59
4291 4357 9.020731 TCAGATCATGTGTTGACTAGTAGTAAA 57.979 33.333 1.88 0.00 37.11 2.01
4293 4359 7.283354 CCTCAGATCATGTGTTGACTAGTAGTA 59.717 40.741 1.88 0.00 37.11 1.82
4294 4360 6.096141 CCTCAGATCATGTGTTGACTAGTAGT 59.904 42.308 1.37 1.37 37.11 2.73
4295 4361 6.096141 ACCTCAGATCATGTGTTGACTAGTAG 59.904 42.308 0.00 0.00 37.11 2.57
4296 4362 5.952347 ACCTCAGATCATGTGTTGACTAGTA 59.048 40.000 0.00 0.00 37.11 1.82
4321 4387 9.212641 GATTACTGATTACTGCACATATGATGT 57.787 33.333 10.38 5.01 46.22 3.06
4326 4392 7.661968 ACTCGATTACTGATTACTGCACATAT 58.338 34.615 0.00 0.00 0.00 1.78
4329 4395 5.125578 AGACTCGATTACTGATTACTGCACA 59.874 40.000 0.00 0.00 0.00 4.57
4330 4396 5.457148 CAGACTCGATTACTGATTACTGCAC 59.543 44.000 7.55 0.00 34.07 4.57
4426 4494 4.022068 GGGTGCAACAAATCTTGATCAGAA 60.022 41.667 3.06 0.00 39.98 3.02
4449 4517 4.878397 CCTAGGAAGTGATACCTGCAAAAG 59.122 45.833 1.05 0.00 37.68 2.27
4802 4870 2.158755 ACAGCATCCCTGGTATACAAGC 60.159 50.000 5.01 0.00 46.14 4.01
4991 5061 5.825507 ACAACAAGAAGAAGAAGCAACATC 58.174 37.500 0.00 0.00 0.00 3.06
5003 5085 6.173339 ACACAGAAGAAGAACAACAAGAAGA 58.827 36.000 0.00 0.00 0.00 2.87
5004 5086 6.314896 AGACACAGAAGAAGAACAACAAGAAG 59.685 38.462 0.00 0.00 0.00 2.85
5005 5087 6.173339 AGACACAGAAGAAGAACAACAAGAA 58.827 36.000 0.00 0.00 0.00 2.52
5006 5088 5.734720 AGACACAGAAGAAGAACAACAAGA 58.265 37.500 0.00 0.00 0.00 3.02
5007 5089 7.721286 ATAGACACAGAAGAAGAACAACAAG 57.279 36.000 0.00 0.00 0.00 3.16
5008 5090 8.397906 CAAATAGACACAGAAGAAGAACAACAA 58.602 33.333 0.00 0.00 0.00 2.83
5009 5091 7.552687 ACAAATAGACACAGAAGAAGAACAACA 59.447 33.333 0.00 0.00 0.00 3.33
5010 5092 7.920738 ACAAATAGACACAGAAGAAGAACAAC 58.079 34.615 0.00 0.00 0.00 3.32
5011 5093 9.778741 ATACAAATAGACACAGAAGAAGAACAA 57.221 29.630 0.00 0.00 0.00 2.83
5012 5094 9.208022 CATACAAATAGACACAGAAGAAGAACA 57.792 33.333 0.00 0.00 0.00 3.18
5013 5095 8.171840 GCATACAAATAGACACAGAAGAAGAAC 58.828 37.037 0.00 0.00 0.00 3.01
5014 5096 8.097038 AGCATACAAATAGACACAGAAGAAGAA 58.903 33.333 0.00 0.00 0.00 2.52
5040 5122 6.121776 TCCCATAAGAAGAAACTAGCAACA 57.878 37.500 0.00 0.00 0.00 3.33
5058 5140 8.048514 CCAGATCCAAATTTGTATTTTTCCCAT 58.951 33.333 16.73 0.00 31.63 4.00
5073 5155 6.755206 CAAATATGCATGACCAGATCCAAAT 58.245 36.000 10.16 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.