Multiple sequence alignment - TraesCS2B01G215800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G215800 chr2B 100.000 3438 0 0 1 3438 201364910 201368347 0.000000e+00 6349.0
1 TraesCS2B01G215800 chr2B 92.157 51 4 0 1805 1855 201366675 201366725 4.760000e-09 73.1
2 TraesCS2B01G215800 chr2B 92.157 51 4 0 1766 1816 201366714 201366764 4.760000e-09 73.1
3 TraesCS2B01G215800 chr2D 94.240 1632 50 19 203 1816 143299910 143301515 0.000000e+00 2453.0
4 TraesCS2B01G215800 chr2D 86.906 1199 66 36 1805 2947 143301465 143302628 0.000000e+00 1260.0
5 TraesCS2B01G215800 chr2D 91.026 312 11 9 3128 3438 143302998 143303293 4.130000e-109 405.0
6 TraesCS2B01G215800 chr2D 94.286 140 6 1 1 138 143299781 143299920 2.690000e-51 213.0
7 TraesCS2B01G215800 chr2D 95.652 69 2 1 138 205 555729004 555729072 3.630000e-20 110.0
8 TraesCS2B01G215800 chr2D 91.892 74 2 1 3053 3122 143302757 143302830 2.180000e-17 100.0
9 TraesCS2B01G215800 chr2A 91.460 1288 51 19 550 1816 158050760 158049511 0.000000e+00 1714.0
10 TraesCS2B01G215800 chr2A 88.681 1069 47 29 1817 2856 158049549 158048526 0.000000e+00 1236.0
11 TraesCS2B01G215800 chr2A 90.950 442 21 6 3015 3438 158048423 158047983 8.270000e-161 577.0
12 TraesCS2B01G215800 chr1B 76.894 264 45 8 286 540 172250510 172250254 5.980000e-28 135.0
13 TraesCS2B01G215800 chr1B 94.366 71 3 1 138 208 483895154 483895223 1.300000e-19 108.0
14 TraesCS2B01G215800 chr1B 92.958 71 3 2 138 207 27730540 27730609 6.070000e-18 102.0
15 TraesCS2B01G215800 chr5A 94.595 74 2 2 137 209 626369062 626368990 2.800000e-21 113.0
16 TraesCS2B01G215800 chrUn 98.413 63 1 0 132 194 38479946 38480008 1.010000e-20 111.0
17 TraesCS2B01G215800 chr3B 96.970 66 2 0 138 203 715061984 715062049 1.010000e-20 111.0
18 TraesCS2B01G215800 chr3B 86.022 93 10 3 138 229 187333785 187333695 2.820000e-16 97.1
19 TraesCS2B01G215800 chr7D 96.875 64 2 0 140 203 137848702 137848765 1.300000e-19 108.0
20 TraesCS2B01G215800 chr7B 91.139 79 1 4 139 214 14778991 14778916 6.070000e-18 102.0
21 TraesCS2B01G215800 chr6B 76.282 156 30 7 369 520 561249653 561249805 3.680000e-10 76.8
22 TraesCS2B01G215800 chr6D 87.302 63 7 1 364 426 424703629 424703568 1.710000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G215800 chr2B 201364910 201368347 3437 False 2165.066667 6349 94.771333 1 3438 3 chr2B.!!$F1 3437
1 TraesCS2B01G215800 chr2D 143299781 143303293 3512 False 886.200000 2453 91.670000 1 3438 5 chr2D.!!$F2 3437
2 TraesCS2B01G215800 chr2A 158047983 158050760 2777 True 1175.666667 1714 90.363667 550 3438 3 chr2A.!!$R1 2888

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
169 172 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.0 0.0 0.0 41.75 5.19 F
593 596 1.135699 GCAAATGCATGTTCCGAGCG 61.136 55.0 0.0 0.0 41.59 5.03 F
1811 1847 0.040425 GAGGCGTTTCACATGCGTTT 60.040 50.0 0.0 0.0 38.46 3.60 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 1847 0.036765 CCGGAAATCGTGACCTCCAA 60.037 55.0 0.00 0.0 37.11 3.53 R
1831 1867 0.040425 AAACGCATGTGAAACGCCTC 60.040 50.0 14.43 0.0 42.39 4.70 R
3025 3201 0.259938 GGTGCTCCCATCATCCCTTT 59.740 55.0 0.00 0.0 0.00 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.008019 GGCATGTACAATGGTGTCATCTTAG 59.992 44.000 0.00 0.00 39.30 2.18
33 34 5.869579 ACAATGGTGTCATCTTAGAAGTGT 58.130 37.500 0.00 0.00 29.49 3.55
60 61 7.475015 GCATAGAATAAATGCTGAGACAAACA 58.525 34.615 0.93 0.00 45.05 2.83
127 130 6.377429 AGAGATGGTCGAAATAAGTCAGTGTA 59.623 38.462 0.00 0.00 0.00 2.90
128 131 6.331061 AGATGGTCGAAATAAGTCAGTGTAC 58.669 40.000 0.00 0.00 0.00 2.90
129 132 5.456548 TGGTCGAAATAAGTCAGTGTACA 57.543 39.130 0.00 0.00 0.00 2.90
130 133 6.032956 TGGTCGAAATAAGTCAGTGTACAT 57.967 37.500 0.00 0.00 0.00 2.29
131 134 6.097356 TGGTCGAAATAAGTCAGTGTACATC 58.903 40.000 0.00 0.00 0.00 3.06
132 135 6.071560 TGGTCGAAATAAGTCAGTGTACATCT 60.072 38.462 0.00 0.00 0.00 2.90
133 136 6.812160 GGTCGAAATAAGTCAGTGTACATCTT 59.188 38.462 0.00 5.01 0.00 2.40
134 137 7.331193 GGTCGAAATAAGTCAGTGTACATCTTT 59.669 37.037 0.00 0.00 0.00 2.52
135 138 8.709646 GTCGAAATAAGTCAGTGTACATCTTTT 58.290 33.333 0.00 0.00 0.00 2.27
136 139 9.268268 TCGAAATAAGTCAGTGTACATCTTTTT 57.732 29.630 0.00 1.78 0.00 1.94
152 155 2.645730 TTTTTGTGGCCGTATGCATC 57.354 45.000 0.19 0.00 43.89 3.91
153 156 0.449786 TTTTGTGGCCGTATGCATCG 59.550 50.000 0.19 7.03 43.89 3.84
154 157 0.675208 TTTGTGGCCGTATGCATCGT 60.675 50.000 0.19 0.00 43.89 3.73
155 158 0.675208 TTGTGGCCGTATGCATCGTT 60.675 50.000 0.19 0.00 43.89 3.85
156 159 1.087202 TGTGGCCGTATGCATCGTTC 61.087 55.000 0.19 2.49 43.89 3.95
157 160 0.810031 GTGGCCGTATGCATCGTTCT 60.810 55.000 0.19 0.00 43.89 3.01
158 161 0.809636 TGGCCGTATGCATCGTTCTG 60.810 55.000 0.19 0.00 43.89 3.02
159 162 0.529773 GGCCGTATGCATCGTTCTGA 60.530 55.000 0.19 0.00 43.89 3.27
160 163 1.502231 GCCGTATGCATCGTTCTGAT 58.498 50.000 0.19 0.00 40.77 2.90
168 171 3.376218 ATCGTTCTGATGCAGAGGC 57.624 52.632 0.00 0.00 41.75 4.70
169 172 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.000 0.00 0.00 41.75 5.19
170 173 2.169789 CGTTCTGATGCAGAGGCCG 61.170 63.158 0.00 0.00 41.75 6.13
171 174 1.817099 GTTCTGATGCAGAGGCCGG 60.817 63.158 0.00 0.00 41.75 6.13
172 175 3.035173 TTCTGATGCAGAGGCCGGG 62.035 63.158 2.18 0.00 41.75 5.73
173 176 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
175 178 4.247380 GATGCAGAGGCCGGGGAG 62.247 72.222 2.18 0.00 40.13 4.30
191 194 2.281539 GGAGTCCCCCTTTTCGAAAA 57.718 50.000 21.35 21.35 0.00 2.29
192 195 2.589720 GGAGTCCCCCTTTTCGAAAAA 58.410 47.619 22.67 6.34 0.00 1.94
242 245 2.756760 TCTTAGATTACGTGGCGGACTT 59.243 45.455 0.00 0.00 0.00 3.01
243 246 3.947196 TCTTAGATTACGTGGCGGACTTA 59.053 43.478 0.00 0.00 0.00 2.24
244 247 4.581824 TCTTAGATTACGTGGCGGACTTAT 59.418 41.667 0.00 0.00 0.00 1.73
275 278 5.352284 AGATTGCCTTATCAACAGTCGTAG 58.648 41.667 0.00 0.00 0.00 3.51
320 323 3.798515 TGGTTAGGAGGACAGTGGTATT 58.201 45.455 0.00 0.00 0.00 1.89
322 325 4.713321 TGGTTAGGAGGACAGTGGTATTAC 59.287 45.833 0.00 0.00 0.00 1.89
331 334 4.100189 GGACAGTGGTATTACTCTGCTCAT 59.900 45.833 14.55 2.19 0.00 2.90
373 376 6.215845 ACTTGACATTGGTGCTTACATTTTC 58.784 36.000 0.00 0.00 0.00 2.29
398 401 7.657761 TCCTAGATTTATTTCAGATCTTTCGGC 59.342 37.037 0.00 0.00 32.68 5.54
411 414 3.132160 TCTTTCGGCGATGTGTGTTTAA 58.868 40.909 11.76 0.00 0.00 1.52
412 415 3.749088 TCTTTCGGCGATGTGTGTTTAAT 59.251 39.130 11.76 0.00 0.00 1.40
427 430 4.517832 GTGTTTAATGGGAGGAGACGTTTT 59.482 41.667 0.00 0.00 0.00 2.43
428 431 4.758165 TGTTTAATGGGAGGAGACGTTTTC 59.242 41.667 0.00 0.00 0.00 2.29
481 484 1.801771 CGGTCTTAAAACGATGTGCCA 59.198 47.619 0.00 0.00 0.00 4.92
485 488 4.201822 GGTCTTAAAACGATGTGCCATCTC 60.202 45.833 11.74 0.00 0.00 2.75
491 494 2.831333 ACGATGTGCCATCTCAATCTC 58.169 47.619 11.74 0.00 0.00 2.75
593 596 1.135699 GCAAATGCATGTTCCGAGCG 61.136 55.000 0.00 0.00 41.59 5.03
665 668 1.272147 GGAACCAAATCAGGCACTCCT 60.272 52.381 0.00 0.00 45.66 3.69
666 669 2.026262 GGAACCAAATCAGGCACTCCTA 60.026 50.000 0.00 0.00 41.93 2.94
667 670 2.789409 ACCAAATCAGGCACTCCTAC 57.211 50.000 0.00 0.00 41.93 3.18
668 671 1.985159 ACCAAATCAGGCACTCCTACA 59.015 47.619 0.00 0.00 41.93 2.74
669 672 2.026822 ACCAAATCAGGCACTCCTACAG 60.027 50.000 0.00 0.00 41.93 2.74
713 718 9.554395 AAAAGAAAAACCAGGTAACCATAAATG 57.446 29.630 0.00 0.00 37.17 2.32
749 754 4.072088 CGTTCTGGTCGCAACGGC 62.072 66.667 0.00 0.00 41.36 5.68
850 855 3.434454 GGGACGCGGTTTGGAAAA 58.566 55.556 12.47 0.00 0.00 2.29
851 856 1.284715 GGGACGCGGTTTGGAAAAG 59.715 57.895 12.47 0.00 0.00 2.27
915 920 2.366153 AATCACCCAAACCCCAGCGT 62.366 55.000 0.00 0.00 0.00 5.07
973 978 2.182030 GGAACCAGCGAGAGACCG 59.818 66.667 0.00 0.00 0.00 4.79
995 1003 1.938596 AGCCAGAGGAGGAGGAGGA 60.939 63.158 0.00 0.00 0.00 3.71
996 1004 1.457455 GCCAGAGGAGGAGGAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
997 1005 1.943730 GCCAGAGGAGGAGGAGGAGA 61.944 65.000 0.00 0.00 0.00 3.71
1089 1110 3.376540 CCGTCTCCATCGATTCTCTTTC 58.623 50.000 0.00 0.00 0.00 2.62
1174 1197 3.400054 AGGCTACGGGGACAAGGC 61.400 66.667 0.00 0.00 38.42 4.35
1411 1435 4.877282 AGCGCTAGATTAGATCAAAGTCC 58.123 43.478 8.99 0.00 0.00 3.85
1413 1437 4.793353 GCGCTAGATTAGATCAAAGTCCGT 60.793 45.833 0.00 0.00 0.00 4.69
1417 1441 2.953466 TTAGATCAAAGTCCGTCCGG 57.047 50.000 0.00 0.00 0.00 5.14
1426 1450 4.011517 TCCGTCCGGGGCTTGTTC 62.012 66.667 0.00 0.00 36.01 3.18
1466 1490 3.474570 GCCGGGTCAGATCTGCCT 61.475 66.667 25.57 0.00 0.00 4.75
1599 1630 2.673341 AGAGCAGTCGCGGTCTCA 60.673 61.111 6.13 0.00 45.49 3.27
1629 1660 1.301716 GGTCGCTCCACTCAAAGCA 60.302 57.895 0.00 0.00 38.45 3.91
1806 1842 3.177600 CGGGAGGCGTTTCACATG 58.822 61.111 0.00 0.00 0.00 3.21
1807 1843 2.877691 GGGAGGCGTTTCACATGC 59.122 61.111 0.00 0.00 36.56 4.06
1808 1844 2.480555 GGAGGCGTTTCACATGCG 59.519 61.111 0.00 0.00 38.46 4.73
1809 1845 2.325082 GGAGGCGTTTCACATGCGT 61.325 57.895 0.00 0.00 38.46 5.24
1810 1846 1.574428 GAGGCGTTTCACATGCGTT 59.426 52.632 0.00 0.00 38.46 4.84
1811 1847 0.040425 GAGGCGTTTCACATGCGTTT 60.040 50.000 0.00 0.00 38.46 3.60
1812 1848 0.383949 AGGCGTTTCACATGCGTTTT 59.616 45.000 0.00 0.00 38.46 2.43
1813 1849 0.502275 GGCGTTTCACATGCGTTTTG 59.498 50.000 0.00 0.00 38.46 2.44
1814 1850 0.502275 GCGTTTCACATGCGTTTTGG 59.498 50.000 0.00 0.00 0.00 3.28
1815 1851 1.862008 GCGTTTCACATGCGTTTTGGA 60.862 47.619 0.00 0.00 0.00 3.53
1816 1852 2.043411 CGTTTCACATGCGTTTTGGAG 58.957 47.619 0.00 0.00 0.00 3.86
1817 1853 2.393764 GTTTCACATGCGTTTTGGAGG 58.606 47.619 0.00 0.00 0.00 4.30
1818 1854 1.686355 TTCACATGCGTTTTGGAGGT 58.314 45.000 0.00 0.00 31.02 3.85
1819 1855 1.234821 TCACATGCGTTTTGGAGGTC 58.765 50.000 0.00 0.00 27.03 3.85
1820 1856 0.950836 CACATGCGTTTTGGAGGTCA 59.049 50.000 0.00 0.00 27.03 4.02
1821 1857 0.951558 ACATGCGTTTTGGAGGTCAC 59.048 50.000 0.00 0.00 0.00 3.67
1822 1858 0.110238 CATGCGTTTTGGAGGTCACG 60.110 55.000 0.00 0.00 35.71 4.35
1823 1859 0.250124 ATGCGTTTTGGAGGTCACGA 60.250 50.000 0.00 0.00 34.49 4.35
1824 1860 0.250124 TGCGTTTTGGAGGTCACGAT 60.250 50.000 0.00 0.00 34.49 3.73
1825 1861 0.872388 GCGTTTTGGAGGTCACGATT 59.128 50.000 0.00 0.00 34.49 3.34
1826 1862 1.265905 GCGTTTTGGAGGTCACGATTT 59.734 47.619 0.00 0.00 34.49 2.17
1827 1863 2.664698 GCGTTTTGGAGGTCACGATTTC 60.665 50.000 0.00 0.00 34.49 2.17
1828 1864 2.095919 CGTTTTGGAGGTCACGATTTCC 60.096 50.000 0.00 0.00 34.49 3.13
1829 1865 1.803334 TTTGGAGGTCACGATTTCCG 58.197 50.000 0.00 0.00 45.44 4.30
1830 1866 0.036765 TTGGAGGTCACGATTTCCGG 60.037 55.000 0.00 0.00 43.93 5.14
1831 1867 1.153429 GGAGGTCACGATTTCCGGG 60.153 63.158 0.00 0.00 44.64 5.73
1868 1906 3.671433 CGTTTTGGACTGGCATTGAGATG 60.671 47.826 0.00 0.00 36.32 2.90
1905 1946 7.107542 TGTTCGTGGTATAGAAATAGGCTTTT 58.892 34.615 0.00 0.00 0.00 2.27
1906 1947 7.279313 TGTTCGTGGTATAGAAATAGGCTTTTC 59.721 37.037 0.00 3.17 36.13 2.29
1908 1949 7.208080 TCGTGGTATAGAAATAGGCTTTTCTC 58.792 38.462 20.38 11.62 43.21 2.87
1986 2030 0.166814 GTTGACGACGCGGTACTACT 59.833 55.000 12.47 0.00 0.00 2.57
1987 2031 1.393539 GTTGACGACGCGGTACTACTA 59.606 52.381 12.47 0.00 0.00 1.82
1988 2032 0.999406 TGACGACGCGGTACTACTAC 59.001 55.000 12.47 0.00 0.00 2.73
2001 2045 3.589495 ACTACTACCAAAGAACGGCTC 57.411 47.619 0.00 0.00 0.00 4.70
2031 2075 5.045213 TGACCCAAGATTATCAACCAGCTTA 60.045 40.000 0.00 0.00 0.00 3.09
2035 2079 8.058847 ACCCAAGATTATCAACCAGCTTAATTA 58.941 33.333 0.00 0.00 0.00 1.40
2077 2121 4.862574 TGCTCACGCACTAACTGTTTATAG 59.137 41.667 0.00 0.00 42.25 1.31
2079 2123 6.032094 GCTCACGCACTAACTGTTTATAGTA 58.968 40.000 0.00 0.00 35.78 1.82
2081 2125 7.859377 GCTCACGCACTAACTGTTTATAGTATA 59.141 37.037 0.00 0.00 35.78 1.47
2082 2126 9.167239 CTCACGCACTAACTGTTTATAGTATAC 57.833 37.037 0.00 0.00 31.35 1.47
2083 2127 8.896744 TCACGCACTAACTGTTTATAGTATACT 58.103 33.333 10.87 10.87 31.35 2.12
2084 2128 9.512435 CACGCACTAACTGTTTATAGTATACTT 57.488 33.333 11.40 1.99 31.35 2.24
2123 2167 1.660167 TGCATGAAGAATGGCTCTCG 58.340 50.000 0.00 0.00 36.71 4.04
2126 2170 2.208431 CATGAAGAATGGCTCTCGTCC 58.792 52.381 0.00 0.00 31.02 4.79
2151 2204 3.573598 CGGAGATTCTCGATCAGATTGG 58.426 50.000 7.57 0.00 37.22 3.16
2202 2258 2.259618 CGCGCACTAAACTGTCAGTAT 58.740 47.619 8.75 0.00 0.00 2.12
2203 2259 3.431856 CGCGCACTAAACTGTCAGTATA 58.568 45.455 8.75 0.00 0.00 1.47
2204 2260 4.042398 CGCGCACTAAACTGTCAGTATAT 58.958 43.478 8.75 0.00 0.00 0.86
2205 2261 5.209977 CGCGCACTAAACTGTCAGTATATA 58.790 41.667 8.75 0.00 0.00 0.86
2206 2262 5.115171 CGCGCACTAAACTGTCAGTATATAC 59.885 44.000 8.75 4.60 0.00 1.47
2208 2264 6.360148 GCGCACTAAACTGTCAGTATATACTC 59.640 42.308 12.62 3.71 33.46 2.59
2255 2326 2.677613 GCATGGTTGGGCATTTCGAATT 60.678 45.455 0.00 0.00 0.00 2.17
2256 2327 3.430098 GCATGGTTGGGCATTTCGAATTA 60.430 43.478 0.00 0.00 0.00 1.40
2257 2328 4.753233 CATGGTTGGGCATTTCGAATTAA 58.247 39.130 0.00 0.00 0.00 1.40
2258 2329 5.358922 CATGGTTGGGCATTTCGAATTAAT 58.641 37.500 0.00 0.00 0.00 1.40
2375 2462 4.326826 TGTCTCATGATTCCCTTGTTGAC 58.673 43.478 0.00 0.00 0.00 3.18
2448 2535 0.325110 TGCTTCTGAGGAGGGAGGAG 60.325 60.000 0.00 0.00 0.00 3.69
2450 2537 0.633921 CTTCTGAGGAGGGAGGAGGA 59.366 60.000 0.00 0.00 0.00 3.71
2652 2744 1.834896 TGGTGCCTTCCGTGTGTATAT 59.165 47.619 0.00 0.00 0.00 0.86
2653 2745 2.237643 TGGTGCCTTCCGTGTGTATATT 59.762 45.455 0.00 0.00 0.00 1.28
2654 2746 2.870411 GGTGCCTTCCGTGTGTATATTC 59.130 50.000 0.00 0.00 0.00 1.75
2655 2747 3.431766 GGTGCCTTCCGTGTGTATATTCT 60.432 47.826 0.00 0.00 0.00 2.40
2656 2748 4.202182 GGTGCCTTCCGTGTGTATATTCTA 60.202 45.833 0.00 0.00 0.00 2.10
2657 2749 5.510861 GGTGCCTTCCGTGTGTATATTCTAT 60.511 44.000 0.00 0.00 0.00 1.98
2658 2750 6.294899 GGTGCCTTCCGTGTGTATATTCTATA 60.295 42.308 0.00 0.00 0.00 1.31
2694 2786 1.902508 TCTGTCTCTGGTGGTGGAATC 59.097 52.381 0.00 0.00 0.00 2.52
2770 2895 3.569902 GGTTTAGCCGTCGGGTTG 58.430 61.111 22.84 0.00 34.28 3.77
2783 2908 1.343465 TCGGGTTGAGTCTGAGGTTTC 59.657 52.381 0.00 0.00 0.00 2.78
2801 2926 5.069516 AGGTTTCGACTGGACTGTACTTTAA 59.930 40.000 0.00 0.00 0.00 1.52
2819 2944 5.581085 ACTTTAACCGATTCTTCCAATCTCG 59.419 40.000 0.00 0.00 0.00 4.04
2822 2947 1.221414 CGATTCTTCCAATCTCGCCC 58.779 55.000 0.00 0.00 0.00 6.13
2857 2982 5.352284 CAGGAATTCTTGACGTGCTATACT 58.648 41.667 11.99 0.00 0.00 2.12
2859 2984 5.812642 AGGAATTCTTGACGTGCTATACTTG 59.187 40.000 5.23 0.00 0.00 3.16
2860 2985 5.581085 GGAATTCTTGACGTGCTATACTTGT 59.419 40.000 5.23 0.00 0.00 3.16
2861 2986 6.092259 GGAATTCTTGACGTGCTATACTTGTT 59.908 38.462 5.23 0.00 0.00 2.83
2862 2987 5.839262 TTCTTGACGTGCTATACTTGTTG 57.161 39.130 0.00 0.00 0.00 3.33
2863 2988 4.242475 TCTTGACGTGCTATACTTGTTGG 58.758 43.478 0.00 0.00 0.00 3.77
2865 2990 4.260139 TGACGTGCTATACTTGTTGGAA 57.740 40.909 0.00 0.00 0.00 3.53
2866 2991 4.242475 TGACGTGCTATACTTGTTGGAAG 58.758 43.478 0.00 0.00 0.00 3.46
2867 2992 4.243270 GACGTGCTATACTTGTTGGAAGT 58.757 43.478 0.00 0.00 0.00 3.01
2868 2993 5.047872 TGACGTGCTATACTTGTTGGAAGTA 60.048 40.000 0.00 0.00 37.18 2.24
2869 2994 5.974108 ACGTGCTATACTTGTTGGAAGTAT 58.026 37.500 10.94 10.94 43.58 2.12
2870 2995 6.403878 ACGTGCTATACTTGTTGGAAGTATT 58.596 36.000 11.31 0.00 41.93 1.89
2890 3015 7.674120 AGTATTAAGGACGTTGTAGGTCTTTT 58.326 34.615 0.00 0.83 34.78 2.27
2895 3020 5.780984 AGGACGTTGTAGGTCTTTTTCTAG 58.219 41.667 0.00 0.00 33.80 2.43
2905 3030 7.658575 TGTAGGTCTTTTTCTAGCGTTTTACAT 59.341 33.333 0.00 0.00 0.00 2.29
2907 3032 7.360361 AGGTCTTTTTCTAGCGTTTTACATTG 58.640 34.615 0.00 0.00 0.00 2.82
2914 3039 5.250200 TCTAGCGTTTTACATTGGGTGATT 58.750 37.500 0.00 0.00 0.00 2.57
2915 3040 4.434713 AGCGTTTTACATTGGGTGATTC 57.565 40.909 0.00 0.00 0.00 2.52
2919 3044 6.207810 AGCGTTTTACATTGGGTGATTCTTTA 59.792 34.615 0.00 0.00 0.00 1.85
2950 3075 0.675083 TGTTTGCCTGCAATCACCAG 59.325 50.000 10.68 0.00 35.70 4.00
2951 3076 0.961019 GTTTGCCTGCAATCACCAGA 59.039 50.000 5.25 0.00 35.70 3.86
2952 3077 1.068055 GTTTGCCTGCAATCACCAGAG 60.068 52.381 5.25 0.00 35.70 3.35
2953 3078 0.401356 TTGCCTGCAATCACCAGAGA 59.599 50.000 0.00 0.00 32.03 3.10
2954 3079 0.321919 TGCCTGCAATCACCAGAGAC 60.322 55.000 0.00 0.00 32.03 3.36
2966 3091 1.261238 CCAGAGACACCCACTCCCTC 61.261 65.000 0.00 0.00 35.27 4.30
2976 3101 1.541233 CCCACTCCCTCGCATGTATTC 60.541 57.143 0.00 0.00 0.00 1.75
2981 3106 0.600255 CCCTCGCATGTATTCGTCCC 60.600 60.000 0.00 0.00 0.00 4.46
2989 3125 3.181510 GCATGTATTCGTCCCAACACTTC 60.182 47.826 0.00 0.00 0.00 3.01
2991 3127 2.635915 TGTATTCGTCCCAACACTTCCT 59.364 45.455 0.00 0.00 0.00 3.36
3021 3197 6.949715 ACCGTCTTTATGGTAAGTTTCCATA 58.050 36.000 15.22 15.22 43.57 2.74
3037 3213 3.836146 TCCATAAGCAAAGGGATGATGG 58.164 45.455 0.00 0.00 34.84 3.51
3042 3218 0.396139 GCAAAGGGATGATGGGAGCA 60.396 55.000 0.00 0.00 0.00 4.26
3083 3269 0.799534 GCTAAGCAAAGCACGCCATG 60.800 55.000 5.51 0.00 42.30 3.66
3122 3308 6.149142 GTCGACGTGTAATCCCTCTTATCTAT 59.851 42.308 0.00 0.00 0.00 1.98
3124 3310 7.879677 TCGACGTGTAATCCCTCTTATCTATTA 59.120 37.037 0.00 0.00 0.00 0.98
3126 3312 8.937207 ACGTGTAATCCCTCTTATCTATTACT 57.063 34.615 0.00 0.00 35.20 2.24
3188 3536 5.189928 TGACATTACGTTGCCTAATTCCAT 58.810 37.500 0.00 0.00 0.00 3.41
3198 3546 4.126437 TGCCTAATTCCATATCGTGTGTG 58.874 43.478 0.00 0.00 0.00 3.82
3283 3631 2.009774 CATGTGCTCCGGGTCTTTAAG 58.990 52.381 0.00 0.00 0.00 1.85
3324 3677 5.623956 TGAAATTTATTCCTCTCCGGCTA 57.376 39.130 0.00 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 4.065088 TGCAACACTTCTAAGATGACACC 58.935 43.478 0.00 0.00 0.00 4.16
81 82 6.935208 TCTCTTAGTTAAAAGAAGGCAAGTCC 59.065 38.462 0.00 0.00 35.14 3.85
82 83 7.964604 TCTCTTAGTTAAAAGAAGGCAAGTC 57.035 36.000 0.00 0.00 35.14 3.01
84 85 7.391833 ACCATCTCTTAGTTAAAAGAAGGCAAG 59.608 37.037 0.00 0.00 35.14 4.01
133 136 1.135546 CGATGCATACGGCCACAAAAA 60.136 47.619 2.24 0.00 43.89 1.94
134 137 0.449786 CGATGCATACGGCCACAAAA 59.550 50.000 2.24 0.00 43.89 2.44
135 138 0.675208 ACGATGCATACGGCCACAAA 60.675 50.000 18.34 0.00 43.89 2.83
136 139 0.675208 AACGATGCATACGGCCACAA 60.675 50.000 18.34 0.00 43.89 3.33
137 140 1.078778 AACGATGCATACGGCCACA 60.079 52.632 18.34 0.00 43.89 4.17
138 141 0.810031 AGAACGATGCATACGGCCAC 60.810 55.000 18.34 9.37 43.89 5.01
139 142 0.809636 CAGAACGATGCATACGGCCA 60.810 55.000 18.34 0.00 43.89 5.36
140 143 0.529773 TCAGAACGATGCATACGGCC 60.530 55.000 18.34 0.00 43.89 6.13
141 144 1.193203 CATCAGAACGATGCATACGGC 59.807 52.381 18.34 11.86 44.95 5.68
150 153 0.179062 GGCCTCTGCATCAGAACGAT 60.179 55.000 0.00 0.00 40.18 3.73
151 154 1.219124 GGCCTCTGCATCAGAACGA 59.781 57.895 0.00 0.00 40.18 3.85
152 155 2.169789 CGGCCTCTGCATCAGAACG 61.170 63.158 0.00 0.63 40.18 3.95
153 156 1.817099 CCGGCCTCTGCATCAGAAC 60.817 63.158 0.00 0.00 40.18 3.01
154 157 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
155 158 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
156 159 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
158 161 4.247380 CTCCCCGGCCTCTGCATC 62.247 72.222 0.00 0.00 40.13 3.91
172 175 2.281539 TTTTCGAAAAGGGGGACTCC 57.718 50.000 19.08 0.00 0.00 3.85
320 323 7.362056 GGTGCTTGAATTTTTATGAGCAGAGTA 60.362 37.037 0.00 0.00 40.39 2.59
322 325 5.803967 GGTGCTTGAATTTTTATGAGCAGAG 59.196 40.000 0.00 0.00 40.39 3.35
331 334 6.707440 TCAAGTCTGGTGCTTGAATTTTTA 57.293 33.333 5.41 0.00 46.21 1.52
342 345 1.609208 ACCAATGTCAAGTCTGGTGC 58.391 50.000 0.00 0.00 40.69 5.01
373 376 7.359598 CGCCGAAAGATCTGAAATAAATCTAGG 60.360 40.741 0.00 0.00 0.00 3.02
391 394 3.529634 TTAAACACACATCGCCGAAAG 57.470 42.857 0.00 0.00 0.00 2.62
393 396 2.160615 CCATTAAACACACATCGCCGAA 59.839 45.455 0.00 0.00 0.00 4.30
398 401 3.605634 TCCTCCCATTAAACACACATCG 58.394 45.455 0.00 0.00 0.00 3.84
411 414 0.974383 ACGAAAACGTCTCCTCCCAT 59.026 50.000 0.00 0.00 0.00 4.00
412 415 0.316204 GACGAAAACGTCTCCTCCCA 59.684 55.000 14.10 0.00 36.12 4.37
442 445 2.845861 GATGAAGTCGCGACGGTCGT 62.846 60.000 31.56 30.13 42.81 4.34
593 596 2.254350 GGCCACGCGGTTCTTTTC 59.746 61.111 12.47 0.00 33.28 2.29
665 668 2.026636 GGCAAATGTGGGTAGGACTGTA 60.027 50.000 0.00 0.00 0.00 2.74
666 669 1.271926 GGCAAATGTGGGTAGGACTGT 60.272 52.381 0.00 0.00 0.00 3.55
667 670 1.271871 TGGCAAATGTGGGTAGGACTG 60.272 52.381 0.00 0.00 0.00 3.51
668 671 1.072266 TGGCAAATGTGGGTAGGACT 58.928 50.000 0.00 0.00 0.00 3.85
669 672 1.917872 TTGGCAAATGTGGGTAGGAC 58.082 50.000 0.00 0.00 0.00 3.85
915 920 1.321474 CAGCAGGGCTTTGTTTGAGA 58.679 50.000 0.00 0.00 36.40 3.27
973 978 3.535962 CTCCTCCTCTGGCTCCGC 61.536 72.222 0.00 0.00 0.00 5.54
995 1003 4.142049 GCTGGTTGTAGTAGCTCATCTTCT 60.142 45.833 0.00 0.00 34.70 2.85
996 1004 4.116238 GCTGGTTGTAGTAGCTCATCTTC 58.884 47.826 0.00 0.00 34.70 2.87
997 1005 3.515502 TGCTGGTTGTAGTAGCTCATCTT 59.484 43.478 0.00 0.00 38.25 2.40
1107 1128 2.958355 TCAGCACAAAAAGAGGAAAGGG 59.042 45.455 0.00 0.00 0.00 3.95
1417 1441 4.035102 AGCCCTCCGAACAAGCCC 62.035 66.667 0.00 0.00 0.00 5.19
1426 1450 0.181114 TCATGATTTCCAGCCCTCCG 59.819 55.000 0.00 0.00 0.00 4.63
1483 1507 4.644288 ACCGACGGGGAAAGGGGA 62.644 66.667 20.00 0.00 39.97 4.81
1629 1660 2.125832 CGCGGGGAATACGTGTGT 60.126 61.111 0.00 0.00 37.10 3.72
1686 1717 2.223044 GCCGTCAATTTCAAGATCGGAC 60.223 50.000 0.00 0.00 38.96 4.79
1806 1842 0.872388 AATCGTGACCTCCAAAACGC 59.128 50.000 0.00 0.00 36.04 4.84
1807 1843 2.095919 GGAAATCGTGACCTCCAAAACG 60.096 50.000 0.00 0.00 37.38 3.60
1808 1844 2.095919 CGGAAATCGTGACCTCCAAAAC 60.096 50.000 0.00 0.00 0.00 2.43
1809 1845 2.147958 CGGAAATCGTGACCTCCAAAA 58.852 47.619 0.00 0.00 0.00 2.44
1810 1846 1.609580 CCGGAAATCGTGACCTCCAAA 60.610 52.381 0.00 0.00 37.11 3.28
1811 1847 0.036765 CCGGAAATCGTGACCTCCAA 60.037 55.000 0.00 0.00 37.11 3.53
1812 1848 1.594833 CCGGAAATCGTGACCTCCA 59.405 57.895 0.00 0.00 37.11 3.86
1813 1849 1.153429 CCCGGAAATCGTGACCTCC 60.153 63.158 0.73 0.00 37.11 4.30
1814 1850 0.179108 CTCCCGGAAATCGTGACCTC 60.179 60.000 0.73 0.00 37.11 3.85
1815 1851 1.614241 CCTCCCGGAAATCGTGACCT 61.614 60.000 0.73 0.00 37.11 3.85
1816 1852 1.153429 CCTCCCGGAAATCGTGACC 60.153 63.158 0.73 0.00 37.11 4.02
1817 1853 1.814169 GCCTCCCGGAAATCGTGAC 60.814 63.158 0.73 0.00 37.11 3.67
1818 1854 2.582436 GCCTCCCGGAAATCGTGA 59.418 61.111 0.73 0.00 37.11 4.35
1819 1855 2.890474 CGCCTCCCGGAAATCGTG 60.890 66.667 0.73 0.00 37.11 4.35
1820 1856 2.459202 AAACGCCTCCCGGAAATCGT 62.459 55.000 0.73 4.28 42.52 3.73
1821 1857 1.702491 GAAACGCCTCCCGGAAATCG 61.702 60.000 0.73 3.55 42.52 3.34
1822 1858 0.675522 TGAAACGCCTCCCGGAAATC 60.676 55.000 0.73 0.00 42.52 2.17
1823 1859 0.958876 GTGAAACGCCTCCCGGAAAT 60.959 55.000 0.73 0.00 42.52 2.17
1824 1860 1.598685 GTGAAACGCCTCCCGGAAA 60.599 57.895 0.73 0.00 42.52 3.13
1825 1861 2.031465 GTGAAACGCCTCCCGGAA 59.969 61.111 0.73 0.00 42.52 4.30
1826 1862 2.589157 ATGTGAAACGCCTCCCGGA 61.589 57.895 0.73 0.00 42.39 5.14
1827 1863 2.046314 ATGTGAAACGCCTCCCGG 60.046 61.111 0.00 0.00 42.39 5.73
1828 1864 3.039202 GCATGTGAAACGCCTCCCG 62.039 63.158 0.00 0.00 42.39 5.14
1829 1865 2.877691 GCATGTGAAACGCCTCCC 59.122 61.111 0.00 0.00 42.39 4.30
1830 1866 1.852067 AACGCATGTGAAACGCCTCC 61.852 55.000 14.43 0.00 42.39 4.30
1831 1867 0.040425 AAACGCATGTGAAACGCCTC 60.040 50.000 14.43 0.00 42.39 4.70
1832 1868 0.383949 AAAACGCATGTGAAACGCCT 59.616 45.000 14.43 0.00 42.39 5.52
1833 1869 0.502275 CAAAACGCATGTGAAACGCC 59.498 50.000 14.43 0.00 42.39 5.68
1834 1870 0.502275 CCAAAACGCATGTGAAACGC 59.498 50.000 14.43 0.00 42.39 4.84
1835 1871 1.778591 GTCCAAAACGCATGTGAAACG 59.221 47.619 14.43 0.01 42.39 3.60
1836 1872 2.788786 CAGTCCAAAACGCATGTGAAAC 59.211 45.455 14.43 1.83 37.35 2.78
1837 1873 2.223688 CCAGTCCAAAACGCATGTGAAA 60.224 45.455 14.43 0.00 0.00 2.69
1838 1874 1.336440 CCAGTCCAAAACGCATGTGAA 59.664 47.619 14.43 0.00 0.00 3.18
1868 1906 6.910536 ATACCACGAACATTTTCTGATCTC 57.089 37.500 0.00 0.00 0.00 2.75
1986 2030 1.549170 GAGGAGAGCCGTTCTTTGGTA 59.451 52.381 0.00 0.00 39.96 3.25
1987 2031 0.321996 GAGGAGAGCCGTTCTTTGGT 59.678 55.000 0.00 0.00 39.96 3.67
1988 2032 0.610687 AGAGGAGAGCCGTTCTTTGG 59.389 55.000 0.00 0.00 39.96 3.28
2001 2045 5.363939 GTTGATAATCTTGGGTCAGAGGAG 58.636 45.833 0.00 0.00 0.00 3.69
2035 2079 7.416022 GTGAGCATCTACGTAATTAGTACTGT 58.584 38.462 5.39 0.00 34.92 3.55
2077 2121 8.859517 TTTGCAACTGTTTTTGGTAAGTATAC 57.140 30.769 0.00 0.00 0.00 1.47
2079 2123 8.825745 CAATTTGCAACTGTTTTTGGTAAGTAT 58.174 29.630 0.00 0.00 0.00 2.12
2081 2125 6.403092 GCAATTTGCAACTGTTTTTGGTAAGT 60.403 34.615 16.35 0.00 44.26 2.24
2082 2126 5.964751 GCAATTTGCAACTGTTTTTGGTAAG 59.035 36.000 16.35 0.00 44.26 2.34
2083 2127 5.873732 GCAATTTGCAACTGTTTTTGGTAA 58.126 33.333 16.35 0.00 44.26 2.85
2084 2128 5.476752 GCAATTTGCAACTGTTTTTGGTA 57.523 34.783 16.35 0.00 44.26 3.25
2085 2129 4.354071 GCAATTTGCAACTGTTTTTGGT 57.646 36.364 16.35 0.00 44.26 3.67
2099 2143 4.755411 AGAGCCATTCTTCATGCAATTTG 58.245 39.130 0.00 0.00 29.61 2.32
2123 2167 1.035932 TCGAGAATCTCCGGTGGGAC 61.036 60.000 0.00 0.00 37.43 4.46
2126 2170 1.000827 CTGATCGAGAATCTCCGGTGG 60.001 57.143 0.00 0.00 35.24 4.61
2181 2237 0.944311 ACTGACAGTTTAGTGCGCGG 60.944 55.000 8.83 0.00 0.00 6.46
2205 2261 9.476202 GCAATTTTCAACTGTTAAAATAGGAGT 57.524 29.630 14.89 0.00 34.93 3.85
2206 2262 8.638565 CGCAATTTTCAACTGTTAAAATAGGAG 58.361 33.333 14.89 11.01 34.93 3.69
2208 2264 8.213812 CACGCAATTTTCAACTGTTAAAATAGG 58.786 33.333 14.89 12.65 34.93 2.57
2212 2268 5.348724 TGCACGCAATTTTCAACTGTTAAAA 59.651 32.000 0.00 2.17 0.00 1.52
2214 2270 4.424626 TGCACGCAATTTTCAACTGTTAA 58.575 34.783 0.00 0.00 0.00 2.01
2255 2326 6.853872 GGCATAATGAAACATTACGCGAATTA 59.146 34.615 15.93 0.00 0.00 1.40
2256 2327 5.685511 GGCATAATGAAACATTACGCGAATT 59.314 36.000 15.93 0.00 0.00 2.17
2257 2328 5.212194 GGCATAATGAAACATTACGCGAAT 58.788 37.500 15.93 5.44 0.00 3.34
2258 2329 4.593157 GGCATAATGAAACATTACGCGAA 58.407 39.130 15.93 2.74 0.00 4.70
2263 2334 3.067461 TGGCCGGCATAATGAAACATTAC 59.933 43.478 30.85 4.87 0.00 1.89
2375 2462 1.788308 CAGGCTGTCGCAAACAAAATG 59.212 47.619 6.28 0.00 37.45 2.32
2448 2535 2.341760 CGAAGTTGATCGTCGTCTTTCC 59.658 50.000 0.00 0.00 41.59 3.13
2652 2744 8.692710 ACAGAGATAAACCGACACAATATAGAA 58.307 33.333 0.00 0.00 0.00 2.10
2653 2745 8.234136 ACAGAGATAAACCGACACAATATAGA 57.766 34.615 0.00 0.00 0.00 1.98
2654 2746 8.353684 AGACAGAGATAAACCGACACAATATAG 58.646 37.037 0.00 0.00 0.00 1.31
2655 2747 8.234136 AGACAGAGATAAACCGACACAATATA 57.766 34.615 0.00 0.00 0.00 0.86
2656 2748 7.068839 AGAGACAGAGATAAACCGACACAATAT 59.931 37.037 0.00 0.00 0.00 1.28
2657 2749 6.377429 AGAGACAGAGATAAACCGACACAATA 59.623 38.462 0.00 0.00 0.00 1.90
2658 2750 5.186021 AGAGACAGAGATAAACCGACACAAT 59.814 40.000 0.00 0.00 0.00 2.71
2770 2895 1.887198 TCCAGTCGAAACCTCAGACTC 59.113 52.381 0.00 0.00 42.65 3.36
2783 2908 3.058016 TCGGTTAAAGTACAGTCCAGTCG 60.058 47.826 0.00 0.00 0.00 4.18
2801 2926 1.473434 GGCGAGATTGGAAGAATCGGT 60.473 52.381 0.00 0.00 34.11 4.69
2846 2971 4.267349 ACTTCCAACAAGTATAGCACGT 57.733 40.909 0.00 0.00 0.00 4.49
2857 2982 6.056884 ACAACGTCCTTAATACTTCCAACAA 58.943 36.000 0.00 0.00 0.00 2.83
2859 2984 6.312180 CCTACAACGTCCTTAATACTTCCAAC 59.688 42.308 0.00 0.00 0.00 3.77
2860 2985 6.014327 ACCTACAACGTCCTTAATACTTCCAA 60.014 38.462 0.00 0.00 0.00 3.53
2861 2986 5.481473 ACCTACAACGTCCTTAATACTTCCA 59.519 40.000 0.00 0.00 0.00 3.53
2862 2987 5.970592 ACCTACAACGTCCTTAATACTTCC 58.029 41.667 0.00 0.00 0.00 3.46
2863 2988 6.861144 AGACCTACAACGTCCTTAATACTTC 58.139 40.000 0.00 0.00 0.00 3.01
2865 2990 6.847421 AAGACCTACAACGTCCTTAATACT 57.153 37.500 0.00 0.00 0.00 2.12
2866 2991 7.895975 AAAAGACCTACAACGTCCTTAATAC 57.104 36.000 0.00 0.00 0.00 1.89
2867 2992 8.370182 AGAAAAAGACCTACAACGTCCTTAATA 58.630 33.333 0.00 0.00 0.00 0.98
2868 2993 7.222161 AGAAAAAGACCTACAACGTCCTTAAT 58.778 34.615 0.00 0.00 0.00 1.40
2869 2994 6.585416 AGAAAAAGACCTACAACGTCCTTAA 58.415 36.000 0.00 0.00 0.00 1.85
2870 2995 6.165700 AGAAAAAGACCTACAACGTCCTTA 57.834 37.500 0.00 0.00 0.00 2.69
2890 3015 4.643463 TCACCCAATGTAAAACGCTAGAA 58.357 39.130 0.00 0.00 0.00 2.10
2895 3020 4.434713 AGAATCACCCAATGTAAAACGC 57.565 40.909 0.00 0.00 0.00 4.84
2914 3039 9.421806 CAGGCAAACAATCACAAAATATAAAGA 57.578 29.630 0.00 0.00 0.00 2.52
2915 3040 8.170553 GCAGGCAAACAATCACAAAATATAAAG 58.829 33.333 0.00 0.00 0.00 1.85
2919 3044 5.549347 TGCAGGCAAACAATCACAAAATAT 58.451 33.333 0.00 0.00 0.00 1.28
2947 3072 1.229336 AGGGAGTGGGTGTCTCTGG 60.229 63.158 0.00 0.00 33.06 3.86
2950 3075 3.007973 GCGAGGGAGTGGGTGTCTC 62.008 68.421 0.00 0.00 0.00 3.36
2951 3076 2.997897 GCGAGGGAGTGGGTGTCT 60.998 66.667 0.00 0.00 0.00 3.41
2952 3077 2.660064 ATGCGAGGGAGTGGGTGTC 61.660 63.158 0.00 0.00 0.00 3.67
2953 3078 2.607750 ATGCGAGGGAGTGGGTGT 60.608 61.111 0.00 0.00 0.00 4.16
2954 3079 1.613317 TACATGCGAGGGAGTGGGTG 61.613 60.000 0.00 0.00 0.00 4.61
2966 3091 1.062002 GTGTTGGGACGAATACATGCG 59.938 52.381 0.00 0.00 0.00 4.73
2976 3101 1.553248 TGGATAGGAAGTGTTGGGACG 59.447 52.381 0.00 0.00 0.00 4.79
2981 3106 3.000727 GACGGTTGGATAGGAAGTGTTG 58.999 50.000 0.00 0.00 0.00 3.33
2989 3125 4.417426 ACCATAAAGACGGTTGGATAGG 57.583 45.455 2.93 0.00 33.36 2.57
2991 3127 6.549433 ACTTACCATAAAGACGGTTGGATA 57.451 37.500 2.93 0.00 36.69 2.59
3021 3197 1.687368 GCTCCCATCATCCCTTTGCTT 60.687 52.381 0.00 0.00 0.00 3.91
3025 3201 0.259938 GGTGCTCCCATCATCCCTTT 59.740 55.000 0.00 0.00 0.00 3.11
3037 3213 4.265073 ACACTTTGAATAGATGGTGCTCC 58.735 43.478 0.00 0.00 0.00 4.70
3042 3218 4.759782 CCTCGACACTTTGAATAGATGGT 58.240 43.478 0.00 0.00 0.00 3.55
3083 3269 1.533338 CGTCGACCTGTGCCTGTATAC 60.533 57.143 10.58 0.00 0.00 1.47
3239 3587 0.532640 TGCTGGTGCACTGTACTGTG 60.533 55.000 24.12 24.12 45.31 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.