Multiple sequence alignment - TraesCS2B01G214600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G214600 chr2B 100.000 3788 0 0 1 3788 199529429 199533216 0.000000e+00 6996.0
1 TraesCS2B01G214600 chr2D 94.698 3093 87 30 364 3419 140551659 140548607 0.000000e+00 4732.0
2 TraesCS2B01G214600 chr2D 86.328 256 21 9 3535 3788 140548438 140548195 2.240000e-67 267.0
3 TraesCS2B01G214600 chr2A 94.329 3139 86 40 364 3453 160686016 160689111 0.000000e+00 4726.0
4 TraesCS2B01G214600 chr3A 79.878 164 19 9 79 241 456784885 456785035 1.440000e-19 108.0
5 TraesCS2B01G214600 chr7A 76.339 224 27 15 28 244 465791132 465790928 3.110000e-16 97.1
6 TraesCS2B01G214600 chr7A 77.640 161 22 10 79 238 248545861 248545714 6.740000e-13 86.1
7 TraesCS2B01G214600 chr1A 76.256 219 30 13 28 241 276830857 276831058 3.110000e-16 97.1
8 TraesCS2B01G214600 chr1A 76.860 121 18 7 28 147 108801290 108801179 4.090000e-05 60.2
9 TraesCS2B01G214600 chr1A 88.235 51 1 2 111 161 108801197 108801152 5.290000e-04 56.5
10 TraesCS2B01G214600 chr6D 79.333 150 15 8 89 237 423771437 423771303 1.450000e-14 91.6
11 TraesCS2B01G214600 chr5A 78.261 161 17 10 21 173 622549127 622549277 1.870000e-13 87.9
12 TraesCS2B01G214600 chr4A 75.916 191 26 11 18 199 629141873 629142052 3.140000e-11 80.5
13 TraesCS2B01G214600 chr4A 81.053 95 11 4 81 173 590249231 590249320 6.790000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G214600 chr2B 199529429 199533216 3787 False 6996.0 6996 100.000 1 3788 1 chr2B.!!$F1 3787
1 TraesCS2B01G214600 chr2D 140548195 140551659 3464 True 2499.5 4732 90.513 364 3788 2 chr2D.!!$R1 3424
2 TraesCS2B01G214600 chr2A 160686016 160689111 3095 False 4726.0 4726 94.329 364 3453 1 chr2A.!!$F1 3089

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
462 467 0.037326 TGAGCAGGGTTCGTTAGCAG 60.037 55.0 0.00 0.00 0.00 4.24 F
925 943 0.179171 CGTAGGAGTACGTGCAGGTG 60.179 60.0 21.78 0.25 45.84 4.00 F
926 944 0.458025 GTAGGAGTACGTGCAGGTGC 60.458 60.0 21.78 20.00 42.50 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2427 2460 0.389426 TGTAAGCCGAGAAGAACCGC 60.389 55.000 0.00 0.00 0.00 5.68 R
2658 2691 2.104331 CGATACCGGCGCAGAAGT 59.896 61.111 10.83 1.65 0.00 3.01 R
2806 2843 2.949106 GCACGTGCATTGCTGACT 59.051 55.556 34.52 0.00 41.59 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.602340 TCTAGAAATATCGACTTGGGCC 57.398 45.455 0.00 0.00 0.00 5.80
24 25 4.223953 TCTAGAAATATCGACTTGGGCCT 58.776 43.478 4.53 0.00 0.00 5.19
25 26 3.477210 AGAAATATCGACTTGGGCCTC 57.523 47.619 4.53 0.00 0.00 4.70
26 27 2.104963 AGAAATATCGACTTGGGCCTCC 59.895 50.000 4.53 0.00 0.00 4.30
27 28 1.807814 AATATCGACTTGGGCCTCCT 58.192 50.000 4.53 0.00 0.00 3.69
28 29 1.807814 ATATCGACTTGGGCCTCCTT 58.192 50.000 4.53 0.00 0.00 3.36
29 30 0.830648 TATCGACTTGGGCCTCCTTG 59.169 55.000 4.53 0.00 0.00 3.61
30 31 1.915078 ATCGACTTGGGCCTCCTTGG 61.915 60.000 4.53 0.00 39.35 3.61
31 32 2.895424 CGACTTGGGCCTCCTTGGT 61.895 63.158 4.53 0.00 38.35 3.67
32 33 1.460699 GACTTGGGCCTCCTTGGTT 59.539 57.895 4.53 0.00 38.35 3.67
33 34 0.178961 GACTTGGGCCTCCTTGGTTT 60.179 55.000 4.53 0.00 38.35 3.27
34 35 0.469892 ACTTGGGCCTCCTTGGTTTG 60.470 55.000 4.53 0.00 38.35 2.93
35 36 0.469892 CTTGGGCCTCCTTGGTTTGT 60.470 55.000 4.53 0.00 38.35 2.83
36 37 0.854218 TTGGGCCTCCTTGGTTTGTA 59.146 50.000 4.53 0.00 38.35 2.41
37 38 1.080638 TGGGCCTCCTTGGTTTGTAT 58.919 50.000 4.53 0.00 38.35 2.29
38 39 2.280103 TGGGCCTCCTTGGTTTGTATA 58.720 47.619 4.53 0.00 38.35 1.47
39 40 2.241176 TGGGCCTCCTTGGTTTGTATAG 59.759 50.000 4.53 0.00 38.35 1.31
40 41 2.241430 GGGCCTCCTTGGTTTGTATAGT 59.759 50.000 0.84 0.00 38.35 2.12
41 42 3.457012 GGGCCTCCTTGGTTTGTATAGTA 59.543 47.826 0.84 0.00 38.35 1.82
42 43 4.080186 GGGCCTCCTTGGTTTGTATAGTAA 60.080 45.833 0.84 0.00 38.35 2.24
43 44 5.398695 GGGCCTCCTTGGTTTGTATAGTAAT 60.399 44.000 0.84 0.00 38.35 1.89
44 45 6.127101 GGCCTCCTTGGTTTGTATAGTAATT 58.873 40.000 0.00 0.00 38.35 1.40
45 46 6.605995 GGCCTCCTTGGTTTGTATAGTAATTT 59.394 38.462 0.00 0.00 38.35 1.82
46 47 7.123697 GGCCTCCTTGGTTTGTATAGTAATTTT 59.876 37.037 0.00 0.00 38.35 1.82
47 48 7.973944 GCCTCCTTGGTTTGTATAGTAATTTTG 59.026 37.037 0.00 0.00 38.35 2.44
48 49 9.020731 CCTCCTTGGTTTGTATAGTAATTTTGT 57.979 33.333 0.00 0.00 0.00 2.83
107 108 8.740123 TTTTTAGAACTCTGTGGTTTGTATGA 57.260 30.769 0.00 0.00 0.00 2.15
108 109 8.740123 TTTTAGAACTCTGTGGTTTGTATGAA 57.260 30.769 0.00 0.00 0.00 2.57
109 110 8.918202 TTTAGAACTCTGTGGTTTGTATGAAT 57.082 30.769 0.00 0.00 0.00 2.57
110 111 6.808008 AGAACTCTGTGGTTTGTATGAATG 57.192 37.500 0.00 0.00 0.00 2.67
111 112 5.707298 AGAACTCTGTGGTTTGTATGAATGG 59.293 40.000 0.00 0.00 0.00 3.16
112 113 5.241403 ACTCTGTGGTTTGTATGAATGGA 57.759 39.130 0.00 0.00 0.00 3.41
113 114 5.819991 ACTCTGTGGTTTGTATGAATGGAT 58.180 37.500 0.00 0.00 0.00 3.41
114 115 6.248433 ACTCTGTGGTTTGTATGAATGGATT 58.752 36.000 0.00 0.00 0.00 3.01
115 116 6.375455 ACTCTGTGGTTTGTATGAATGGATTC 59.625 38.462 0.00 0.00 37.31 2.52
116 117 5.652014 TCTGTGGTTTGTATGAATGGATTCC 59.348 40.000 0.00 0.00 35.97 3.01
117 118 5.579047 TGTGGTTTGTATGAATGGATTCCT 58.421 37.500 3.95 0.00 35.97 3.36
118 119 6.726379 TGTGGTTTGTATGAATGGATTCCTA 58.274 36.000 3.95 0.00 35.97 2.94
119 120 7.353525 TGTGGTTTGTATGAATGGATTCCTAT 58.646 34.615 3.95 0.00 35.97 2.57
120 121 7.838696 TGTGGTTTGTATGAATGGATTCCTATT 59.161 33.333 3.95 2.49 35.97 1.73
121 122 8.352942 GTGGTTTGTATGAATGGATTCCTATTC 58.647 37.037 15.39 15.39 35.97 1.75
122 123 7.505585 TGGTTTGTATGAATGGATTCCTATTCC 59.494 37.037 17.72 8.91 35.97 3.01
123 124 7.725844 GGTTTGTATGAATGGATTCCTATTCCT 59.274 37.037 17.72 13.37 35.97 3.36
124 125 9.793259 GTTTGTATGAATGGATTCCTATTCCTA 57.207 33.333 17.72 12.72 35.97 2.94
125 126 9.793259 TTTGTATGAATGGATTCCTATTCCTAC 57.207 33.333 20.73 20.73 36.14 3.18
126 127 7.611770 TGTATGAATGGATTCCTATTCCTACG 58.388 38.462 21.28 0.00 37.29 3.51
127 128 6.688073 ATGAATGGATTCCTATTCCTACGT 57.312 37.500 17.72 0.00 35.97 3.57
128 129 7.792364 ATGAATGGATTCCTATTCCTACGTA 57.208 36.000 17.72 0.00 35.97 3.57
129 130 7.228314 TGAATGGATTCCTATTCCTACGTAG 57.772 40.000 15.92 15.92 35.97 3.51
130 131 6.210784 TGAATGGATTCCTATTCCTACGTAGG 59.789 42.308 32.05 32.05 39.15 3.18
131 132 7.914948 TGAATGGATTCCTATTCCTACGTAGGA 60.915 40.741 35.34 35.34 43.54 2.94
151 152 6.848562 AGGATTGGTTTCCTATGTATCCTT 57.151 37.500 0.00 0.00 44.50 3.36
152 153 6.842676 AGGATTGGTTTCCTATGTATCCTTC 58.157 40.000 0.00 0.00 44.50 3.46
153 154 6.389869 AGGATTGGTTTCCTATGTATCCTTCA 59.610 38.462 0.00 0.00 44.50 3.02
154 155 6.486993 GGATTGGTTTCCTATGTATCCTTCAC 59.513 42.308 0.00 0.00 32.68 3.18
155 156 6.381498 TTGGTTTCCTATGTATCCTTCACA 57.619 37.500 0.00 0.00 0.00 3.58
156 157 6.575244 TGGTTTCCTATGTATCCTTCACAT 57.425 37.500 0.00 0.00 39.82 3.21
157 158 6.969043 TGGTTTCCTATGTATCCTTCACATT 58.031 36.000 0.00 0.00 37.74 2.71
158 159 7.410174 TGGTTTCCTATGTATCCTTCACATTT 58.590 34.615 0.00 0.00 37.74 2.32
159 160 7.893302 TGGTTTCCTATGTATCCTTCACATTTT 59.107 33.333 0.00 0.00 37.74 1.82
160 161 9.403583 GGTTTCCTATGTATCCTTCACATTTTA 57.596 33.333 0.00 0.00 37.74 1.52
193 194 7.573968 AAAAGGCATTAGCTTAGACCTATTG 57.426 36.000 0.00 0.00 41.70 1.90
194 195 6.500589 AAGGCATTAGCTTAGACCTATTGA 57.499 37.500 0.00 0.00 41.70 2.57
195 196 6.500589 AGGCATTAGCTTAGACCTATTGAA 57.499 37.500 0.00 0.00 41.70 2.69
196 197 6.900194 AGGCATTAGCTTAGACCTATTGAAA 58.100 36.000 0.00 0.00 41.70 2.69
197 198 7.346471 AGGCATTAGCTTAGACCTATTGAAAA 58.654 34.615 0.00 0.00 41.70 2.29
198 199 7.834181 AGGCATTAGCTTAGACCTATTGAAAAA 59.166 33.333 0.00 0.00 41.70 1.94
199 200 7.915923 GGCATTAGCTTAGACCTATTGAAAAAC 59.084 37.037 0.00 0.00 41.70 2.43
200 201 8.458843 GCATTAGCTTAGACCTATTGAAAAACA 58.541 33.333 0.00 0.00 37.91 2.83
201 202 9.994432 CATTAGCTTAGACCTATTGAAAAACAG 57.006 33.333 0.00 0.00 0.00 3.16
202 203 9.959721 ATTAGCTTAGACCTATTGAAAAACAGA 57.040 29.630 0.00 0.00 0.00 3.41
203 204 9.787435 TTAGCTTAGACCTATTGAAAAACAGAA 57.213 29.630 0.00 0.00 0.00 3.02
204 205 8.870075 AGCTTAGACCTATTGAAAAACAGAAT 57.130 30.769 0.00 0.00 0.00 2.40
205 206 9.301897 AGCTTAGACCTATTGAAAAACAGAATT 57.698 29.630 0.00 0.00 0.00 2.17
206 207 9.561270 GCTTAGACCTATTGAAAAACAGAATTC 57.439 33.333 0.00 0.00 0.00 2.17
208 209 9.807921 TTAGACCTATTGAAAAACAGAATTCCT 57.192 29.630 0.65 0.00 0.00 3.36
210 211 9.981460 AGACCTATTGAAAAACAGAATTCCTAT 57.019 29.630 0.65 0.00 0.00 2.57
212 213 9.753674 ACCTATTGAAAAACAGAATTCCTATCA 57.246 29.630 0.65 0.00 0.00 2.15
240 241 9.941664 ATGAATCAAATGACATATCGTTTTCTC 57.058 29.630 0.00 0.00 41.27 2.87
241 242 8.397906 TGAATCAAATGACATATCGTTTTCTCC 58.602 33.333 0.00 0.00 41.27 3.71
242 243 7.864108 ATCAAATGACATATCGTTTTCTCCA 57.136 32.000 0.00 0.00 41.27 3.86
243 244 7.864108 TCAAATGACATATCGTTTTCTCCAT 57.136 32.000 0.00 0.00 41.27 3.41
244 245 7.919690 TCAAATGACATATCGTTTTCTCCATC 58.080 34.615 0.00 0.00 41.27 3.51
245 246 6.530913 AATGACATATCGTTTTCTCCATCG 57.469 37.500 0.00 0.00 29.14 3.84
246 247 5.257082 TGACATATCGTTTTCTCCATCGA 57.743 39.130 0.00 0.00 36.77 3.59
247 248 5.041287 TGACATATCGTTTTCTCCATCGAC 58.959 41.667 0.00 0.00 35.24 4.20
248 249 5.163550 TGACATATCGTTTTCTCCATCGACT 60.164 40.000 0.00 0.00 35.24 4.18
249 250 5.043903 ACATATCGTTTTCTCCATCGACTG 58.956 41.667 0.00 0.00 35.24 3.51
250 251 3.868757 ATCGTTTTCTCCATCGACTGA 57.131 42.857 0.00 0.00 35.24 3.41
251 252 3.868757 TCGTTTTCTCCATCGACTGAT 57.131 42.857 0.00 0.00 34.28 2.90
252 253 4.188247 TCGTTTTCTCCATCGACTGATT 57.812 40.909 0.00 0.00 30.49 2.57
253 254 3.926527 TCGTTTTCTCCATCGACTGATTG 59.073 43.478 0.00 0.00 30.49 2.67
254 255 3.484229 CGTTTTCTCCATCGACTGATTGC 60.484 47.826 0.00 0.00 30.49 3.56
255 256 3.616956 TTTCTCCATCGACTGATTGCT 57.383 42.857 0.00 0.00 30.49 3.91
256 257 4.736126 TTTCTCCATCGACTGATTGCTA 57.264 40.909 0.00 0.00 30.49 3.49
257 258 3.998099 TCTCCATCGACTGATTGCTAG 57.002 47.619 0.00 0.00 30.49 3.42
258 259 2.035193 TCTCCATCGACTGATTGCTAGC 59.965 50.000 8.10 8.10 30.49 3.42
259 260 1.756538 TCCATCGACTGATTGCTAGCA 59.243 47.619 14.93 14.93 30.49 3.49
260 261 1.863454 CCATCGACTGATTGCTAGCAC 59.137 52.381 19.17 7.75 30.49 4.40
261 262 1.863454 CATCGACTGATTGCTAGCACC 59.137 52.381 19.17 13.02 30.49 5.01
262 263 1.186200 TCGACTGATTGCTAGCACCT 58.814 50.000 19.17 7.93 0.00 4.00
263 264 1.550524 TCGACTGATTGCTAGCACCTT 59.449 47.619 19.17 5.19 0.00 3.50
264 265 2.028112 TCGACTGATTGCTAGCACCTTT 60.028 45.455 19.17 2.31 0.00 3.11
265 266 2.349886 CGACTGATTGCTAGCACCTTTC 59.650 50.000 19.17 12.46 0.00 2.62
266 267 2.680339 GACTGATTGCTAGCACCTTTCC 59.320 50.000 19.17 2.15 0.00 3.13
267 268 2.307098 ACTGATTGCTAGCACCTTTCCT 59.693 45.455 19.17 0.00 0.00 3.36
268 269 3.519510 ACTGATTGCTAGCACCTTTCCTA 59.480 43.478 19.17 0.00 0.00 2.94
269 270 4.164988 ACTGATTGCTAGCACCTTTCCTAT 59.835 41.667 19.17 5.32 0.00 2.57
270 271 5.116084 TGATTGCTAGCACCTTTCCTATT 57.884 39.130 19.17 0.00 0.00 1.73
271 272 6.126768 ACTGATTGCTAGCACCTTTCCTATTA 60.127 38.462 19.17 1.42 0.00 0.98
272 273 6.055588 TGATTGCTAGCACCTTTCCTATTAC 58.944 40.000 19.17 0.00 0.00 1.89
273 274 4.417426 TGCTAGCACCTTTCCTATTACC 57.583 45.455 14.93 0.00 0.00 2.85
274 275 3.778075 TGCTAGCACCTTTCCTATTACCA 59.222 43.478 14.93 0.00 0.00 3.25
275 276 4.412199 TGCTAGCACCTTTCCTATTACCAT 59.588 41.667 14.93 0.00 0.00 3.55
276 277 4.998033 GCTAGCACCTTTCCTATTACCATC 59.002 45.833 10.63 0.00 0.00 3.51
277 278 5.221742 GCTAGCACCTTTCCTATTACCATCT 60.222 44.000 10.63 0.00 0.00 2.90
278 279 5.297569 AGCACCTTTCCTATTACCATCTC 57.702 43.478 0.00 0.00 0.00 2.75
279 280 4.721776 AGCACCTTTCCTATTACCATCTCA 59.278 41.667 0.00 0.00 0.00 3.27
280 281 5.191722 AGCACCTTTCCTATTACCATCTCAA 59.808 40.000 0.00 0.00 0.00 3.02
281 282 5.885912 GCACCTTTCCTATTACCATCTCAAA 59.114 40.000 0.00 0.00 0.00 2.69
282 283 6.377146 GCACCTTTCCTATTACCATCTCAAAA 59.623 38.462 0.00 0.00 0.00 2.44
283 284 7.093945 GCACCTTTCCTATTACCATCTCAAAAA 60.094 37.037 0.00 0.00 0.00 1.94
305 306 3.957591 AAACTTTCCTACGACCTCTCC 57.042 47.619 0.00 0.00 0.00 3.71
306 307 1.461559 ACTTTCCTACGACCTCTCCG 58.538 55.000 0.00 0.00 0.00 4.63
307 308 1.004044 ACTTTCCTACGACCTCTCCGA 59.996 52.381 0.00 0.00 0.00 4.55
308 309 2.299521 CTTTCCTACGACCTCTCCGAT 58.700 52.381 0.00 0.00 0.00 4.18
309 310 2.431954 TTCCTACGACCTCTCCGATT 57.568 50.000 0.00 0.00 0.00 3.34
310 311 2.431954 TCCTACGACCTCTCCGATTT 57.568 50.000 0.00 0.00 0.00 2.17
311 312 2.731572 TCCTACGACCTCTCCGATTTT 58.268 47.619 0.00 0.00 0.00 1.82
312 313 2.686915 TCCTACGACCTCTCCGATTTTC 59.313 50.000 0.00 0.00 0.00 2.29
313 314 2.426024 CCTACGACCTCTCCGATTTTCA 59.574 50.000 0.00 0.00 0.00 2.69
314 315 2.656560 ACGACCTCTCCGATTTTCAG 57.343 50.000 0.00 0.00 0.00 3.02
315 316 1.204941 ACGACCTCTCCGATTTTCAGG 59.795 52.381 0.00 0.00 0.00 3.86
316 317 1.657822 GACCTCTCCGATTTTCAGGC 58.342 55.000 0.00 0.00 0.00 4.85
317 318 0.984230 ACCTCTCCGATTTTCAGGCA 59.016 50.000 0.00 0.00 0.00 4.75
318 319 1.351017 ACCTCTCCGATTTTCAGGCAA 59.649 47.619 0.00 0.00 0.00 4.52
319 320 1.740025 CCTCTCCGATTTTCAGGCAAC 59.260 52.381 0.00 0.00 0.00 4.17
336 337 3.920412 GGCAACTTAACAACAGCTATTGC 59.080 43.478 4.21 0.00 40.30 3.56
337 338 3.603770 GCAACTTAACAACAGCTATTGCG 59.396 43.478 4.21 0.00 45.42 4.85
338 339 4.612712 GCAACTTAACAACAGCTATTGCGA 60.613 41.667 4.21 0.00 45.42 5.10
339 340 5.631026 CAACTTAACAACAGCTATTGCGAT 58.369 37.500 4.21 0.00 45.42 4.58
340 341 5.470845 ACTTAACAACAGCTATTGCGATC 57.529 39.130 4.21 0.00 45.42 3.69
341 342 4.032900 ACTTAACAACAGCTATTGCGATCG 59.967 41.667 11.69 11.69 45.42 3.69
342 343 2.293677 ACAACAGCTATTGCGATCGA 57.706 45.000 21.57 0.00 45.42 3.59
343 344 2.196749 ACAACAGCTATTGCGATCGAG 58.803 47.619 21.57 8.34 45.42 4.04
344 345 2.159240 ACAACAGCTATTGCGATCGAGA 60.159 45.455 21.57 6.28 45.42 4.04
345 346 3.055591 CAACAGCTATTGCGATCGAGAT 58.944 45.455 21.57 13.68 45.42 2.75
346 347 3.377346 ACAGCTATTGCGATCGAGATT 57.623 42.857 21.57 2.29 45.42 2.40
347 348 3.055591 ACAGCTATTGCGATCGAGATTG 58.944 45.455 21.57 12.90 45.42 2.67
348 349 2.064762 AGCTATTGCGATCGAGATTGC 58.935 47.619 21.57 21.10 46.09 3.56
349 350 1.127582 GCTATTGCGATCGAGATTGCC 59.872 52.381 21.57 0.00 45.47 4.52
350 351 1.728971 CTATTGCGATCGAGATTGCCC 59.271 52.381 21.57 0.00 45.47 5.36
351 352 0.179048 ATTGCGATCGAGATTGCCCA 60.179 50.000 21.57 0.92 45.47 5.36
352 353 0.179048 TTGCGATCGAGATTGCCCAT 60.179 50.000 21.57 0.00 45.47 4.00
353 354 0.881600 TGCGATCGAGATTGCCCATG 60.882 55.000 21.57 0.00 45.47 3.66
354 355 0.882042 GCGATCGAGATTGCCCATGT 60.882 55.000 21.57 0.00 41.33 3.21
355 356 0.863799 CGATCGAGATTGCCCATGTG 59.136 55.000 10.26 0.00 0.00 3.21
356 357 1.233019 GATCGAGATTGCCCATGTGG 58.767 55.000 0.00 0.00 37.09 4.17
357 358 0.839277 ATCGAGATTGCCCATGTGGA 59.161 50.000 0.00 0.00 37.39 4.02
358 359 0.617935 TCGAGATTGCCCATGTGGAA 59.382 50.000 0.00 0.00 37.39 3.53
359 360 1.212688 TCGAGATTGCCCATGTGGAAT 59.787 47.619 0.00 0.00 37.39 3.01
360 361 1.335810 CGAGATTGCCCATGTGGAATG 59.664 52.381 0.00 0.00 37.39 2.67
361 362 1.684983 GAGATTGCCCATGTGGAATGG 59.315 52.381 0.00 0.00 37.39 3.16
362 363 1.288633 AGATTGCCCATGTGGAATGGA 59.711 47.619 0.00 0.00 41.64 3.41
379 380 1.699083 TGGAGCAGTCAAAGTGGATCA 59.301 47.619 0.00 0.00 0.00 2.92
381 382 3.149196 GGAGCAGTCAAAGTGGATCAAA 58.851 45.455 0.00 0.00 0.00 2.69
391 395 3.372440 AGTGGATCAAACCCATCCTTC 57.628 47.619 0.00 0.00 40.66 3.46
396 400 2.905415 TCAAACCCATCCTTCTGCAT 57.095 45.000 0.00 0.00 0.00 3.96
397 401 2.449464 TCAAACCCATCCTTCTGCATG 58.551 47.619 0.00 0.00 0.00 4.06
432 436 2.680429 GGAAACGTGACAACCGTGA 58.320 52.632 0.00 0.00 38.77 4.35
433 437 0.302589 GGAAACGTGACAACCGTGAC 59.697 55.000 0.00 0.00 38.77 3.67
434 438 1.000884 GAAACGTGACAACCGTGACA 58.999 50.000 0.00 0.00 38.77 3.58
458 463 1.139256 TGTGTTGAGCAGGGTTCGTTA 59.861 47.619 0.00 0.00 0.00 3.18
462 467 0.037326 TGAGCAGGGTTCGTTAGCAG 60.037 55.000 0.00 0.00 0.00 4.24
499 507 3.527533 CCTACAACACGGCAAAGCTATA 58.472 45.455 0.00 0.00 0.00 1.31
501 509 2.356135 ACAACACGGCAAAGCTATAGG 58.644 47.619 1.04 0.00 0.00 2.57
608 616 3.118884 GGCCAGTGGTAGATTAAACTCGA 60.119 47.826 11.74 0.00 0.00 4.04
642 650 3.369471 CCCCAATAATATGGTCGAGCGAT 60.369 47.826 10.46 7.37 38.91 4.58
663 671 7.700322 CGATAGCACATATCACCATATTACC 57.300 40.000 0.00 0.00 40.42 2.85
664 672 7.492524 CGATAGCACATATCACCATATTACCT 58.507 38.462 0.00 0.00 40.42 3.08
672 680 8.397957 ACATATCACCATATTACCTCTCTCTCT 58.602 37.037 0.00 0.00 0.00 3.10
676 684 6.331572 TCACCATATTACCTCTCTCTCTCTCT 59.668 42.308 0.00 0.00 0.00 3.10
824 833 5.875224 TCCCACTCAAAAGAATACACATCA 58.125 37.500 0.00 0.00 0.00 3.07
827 836 5.390885 CCACTCAAAAGAATACACATCACCG 60.391 44.000 0.00 0.00 0.00 4.94
837 846 2.281414 CATCACCGCACCACACCA 60.281 61.111 0.00 0.00 0.00 4.17
911 929 0.962489 CCAGCTGATCCCTACGTAGG 59.038 60.000 31.17 31.17 43.25 3.18
912 930 1.478837 CCAGCTGATCCCTACGTAGGA 60.479 57.143 37.76 24.96 46.63 2.94
913 931 1.883275 CAGCTGATCCCTACGTAGGAG 59.117 57.143 37.76 27.69 46.63 3.69
914 932 1.495574 AGCTGATCCCTACGTAGGAGT 59.504 52.381 37.76 26.25 46.63 3.85
915 933 2.709934 AGCTGATCCCTACGTAGGAGTA 59.290 50.000 37.76 24.06 46.63 2.59
924 942 2.177950 CGTAGGAGTACGTGCAGGT 58.822 57.895 17.24 17.24 45.84 4.00
925 943 0.179171 CGTAGGAGTACGTGCAGGTG 60.179 60.000 21.78 0.25 45.84 4.00
926 944 0.458025 GTAGGAGTACGTGCAGGTGC 60.458 60.000 21.78 20.00 42.50 5.01
1163 1181 1.830587 TACCACCACAGCTCCAGCAG 61.831 60.000 0.48 0.00 45.16 4.24
1302 1335 5.598005 CCTCTACATGGATGAAGACTTCTCT 59.402 44.000 16.02 3.88 0.00 3.10
1338 1371 2.037136 GCAGCACTTCCACTCGCAT 61.037 57.895 0.00 0.00 0.00 4.73
1497 1530 4.493747 GACTTCTCGTCCCCGGCG 62.494 72.222 0.00 0.00 36.62 6.46
1659 1692 2.811317 CTCAACGAGCTGGCGTCC 60.811 66.667 0.47 0.00 44.86 4.79
2427 2460 3.423154 GTGTTCGGCGAGGGCTTG 61.423 66.667 10.46 0.00 39.81 4.01
2673 2706 1.153628 GTCACTTCTGCGCCGGTAT 60.154 57.895 4.18 0.00 0.00 2.73
2806 2843 1.043116 ATCGGTGGAGATGGAGCGAA 61.043 55.000 0.00 0.00 44.40 4.70
2824 2861 2.448153 AAGTCAGCAATGCACGTGCG 62.448 55.000 33.22 21.22 46.86 5.34
2826 2863 2.500369 CAGCAATGCACGTGCGAC 60.500 61.111 33.22 22.06 46.86 5.19
2829 2866 2.202046 CAATGCACGTGCGACGAC 60.202 61.111 33.22 8.83 46.05 4.34
2957 3006 0.643820 GGCTCACGTACGTATGTTGC 59.356 55.000 22.34 23.74 0.00 4.17
3031 3080 5.558083 CGATTTTTATCATCATCGTTCGCCA 60.558 40.000 0.00 0.00 34.99 5.69
3107 3156 2.032377 TGCTTTTGTGTTTCGATCGTCC 60.032 45.455 15.94 4.82 0.00 4.79
3219 3285 5.409826 GCTAGCTAGGTTTGCATTATCGATT 59.590 40.000 22.10 0.00 0.00 3.34
3321 3387 1.609841 GCACGGCCTACTACTTTTGGT 60.610 52.381 0.00 0.00 0.00 3.67
3367 3433 7.536855 AGCTTTGCTAGACCATATATACGTAC 58.463 38.462 0.00 0.00 36.99 3.67
3373 3443 6.256539 GCTAGACCATATATACGTACGTGCTA 59.743 42.308 30.25 20.49 0.00 3.49
3406 3476 7.737972 TTGTTTCAGGAATGATCTCGTTAAA 57.262 32.000 0.00 0.00 0.00 1.52
3409 3479 4.766375 TCAGGAATGATCTCGTTAAACCC 58.234 43.478 0.00 0.00 0.00 4.11
3414 3484 5.880887 GGAATGATCTCGTTAAACCCTTTCT 59.119 40.000 0.00 0.00 0.00 2.52
3439 3509 1.581934 TTTTCTGCTCGCATATCCCG 58.418 50.000 0.00 0.00 0.00 5.14
3440 3510 0.464036 TTTCTGCTCGCATATCCCGT 59.536 50.000 0.00 0.00 0.00 5.28
3444 3514 1.261619 CTGCTCGCATATCCCGTTTTC 59.738 52.381 0.00 0.00 0.00 2.29
3445 3515 1.295792 GCTCGCATATCCCGTTTTCA 58.704 50.000 0.00 0.00 0.00 2.69
3447 3517 2.550978 CTCGCATATCCCGTTTTCAGT 58.449 47.619 0.00 0.00 0.00 3.41
3450 3520 4.116961 TCGCATATCCCGTTTTCAGTTAG 58.883 43.478 0.00 0.00 0.00 2.34
3451 3521 3.303132 CGCATATCCCGTTTTCAGTTAGC 60.303 47.826 0.00 0.00 0.00 3.09
3452 3522 3.625764 GCATATCCCGTTTTCAGTTAGCA 59.374 43.478 0.00 0.00 0.00 3.49
3453 3523 4.275936 GCATATCCCGTTTTCAGTTAGCAT 59.724 41.667 0.00 0.00 0.00 3.79
3454 3524 5.468746 GCATATCCCGTTTTCAGTTAGCATA 59.531 40.000 0.00 0.00 0.00 3.14
3455 3525 6.017440 GCATATCCCGTTTTCAGTTAGCATAA 60.017 38.462 0.00 0.00 0.00 1.90
3457 3527 4.004982 TCCCGTTTTCAGTTAGCATAACC 58.995 43.478 0.00 0.00 0.00 2.85
3461 3558 5.644636 CCGTTTTCAGTTAGCATAACCCTTA 59.355 40.000 0.00 0.00 0.00 2.69
3465 3562 8.573885 GTTTTCAGTTAGCATAACCCTTACTTT 58.426 33.333 0.00 0.00 0.00 2.66
3479 3576 6.616577 ACCCTTACTTTACCTGATCCAAAAA 58.383 36.000 0.00 0.00 0.00 1.94
3480 3577 6.719829 ACCCTTACTTTACCTGATCCAAAAAG 59.280 38.462 0.00 0.00 34.19 2.27
3481 3578 6.946009 CCCTTACTTTACCTGATCCAAAAAGA 59.054 38.462 11.59 0.00 32.72 2.52
3482 3579 7.121315 CCCTTACTTTACCTGATCCAAAAAGAG 59.879 40.741 11.59 3.16 32.72 2.85
3483 3580 7.665974 CCTTACTTTACCTGATCCAAAAAGAGT 59.334 37.037 11.59 2.43 32.72 3.24
3485 3582 5.770162 ACTTTACCTGATCCAAAAAGAGTGG 59.230 40.000 11.59 0.00 37.51 4.00
3486 3583 2.519013 ACCTGATCCAAAAAGAGTGGC 58.481 47.619 0.00 0.00 35.99 5.01
3487 3584 2.158475 ACCTGATCCAAAAAGAGTGGCA 60.158 45.455 0.00 0.00 35.99 4.92
3488 3585 3.094572 CCTGATCCAAAAAGAGTGGCAT 58.905 45.455 0.00 0.00 35.99 4.40
3503 3600 4.406456 AGTGGCATTAGGTCAATGTTCAA 58.594 39.130 0.00 0.00 45.05 2.69
3508 3605 4.462483 GCATTAGGTCAATGTTCAAAGGGA 59.538 41.667 0.00 0.00 45.05 4.20
3531 3628 4.288398 TCTTTGAGAGATCTCTGGCTGAT 58.712 43.478 29.81 3.82 43.25 2.90
3537 3661 5.163468 TGAGAGATCTCTGGCTGATACAAAC 60.163 44.000 29.81 10.69 43.25 2.93
3546 3670 5.656859 TCTGGCTGATACAAACTAAGCTAGA 59.343 40.000 5.11 5.11 45.56 2.43
3557 3681 4.323553 ACTAAGCTAGAGCCAAATACCG 57.676 45.455 0.00 0.00 43.38 4.02
3571 3695 2.388890 ATACCGCTCATCCAGGCAGC 62.389 60.000 0.00 0.00 0.00 5.25
3591 3715 3.535561 GCTTCTGCTGCATAGACCTTAA 58.464 45.455 1.31 0.00 36.03 1.85
3592 3716 4.133078 GCTTCTGCTGCATAGACCTTAAT 58.867 43.478 1.31 0.00 36.03 1.40
3594 3718 5.760253 GCTTCTGCTGCATAGACCTTAATTA 59.240 40.000 1.31 0.00 36.03 1.40
3595 3719 6.429385 GCTTCTGCTGCATAGACCTTAATTAT 59.571 38.462 1.31 0.00 36.03 1.28
3596 3720 7.604164 GCTTCTGCTGCATAGACCTTAATTATA 59.396 37.037 1.31 0.00 36.03 0.98
3645 3769 1.271543 TGAGAGTGACAAATGGCCCTG 60.272 52.381 0.00 0.00 0.00 4.45
3647 3771 0.883833 GAGTGACAAATGGCCCTGTG 59.116 55.000 0.00 0.00 0.00 3.66
3659 3785 3.034635 TGGCCCTGTGTATGTTGTTTTT 58.965 40.909 0.00 0.00 0.00 1.94
3688 3814 7.861629 AGAAGACAATATCTGGTGAAATGGTA 58.138 34.615 0.00 0.00 37.88 3.25
3724 3850 6.576313 GCTGATGCTATAATGATTTGTTGTCG 59.424 38.462 0.00 0.00 36.03 4.35
3727 3853 7.909641 TGATGCTATAATGATTTGTTGTCGTTG 59.090 33.333 0.00 0.00 0.00 4.10
3742 3868 2.940410 GTCGTTGTCTTTGGTCCAAGAA 59.060 45.455 4.09 0.00 0.00 2.52
3753 3879 2.040545 TGGTCCAAGAAGCCGGATAAAA 59.959 45.455 5.05 0.00 32.83 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.130477 AGGCCCAAGTCGATATTTCTAGAAA 59.870 40.000 19.83 19.83 34.46 2.52
1 2 4.654262 AGGCCCAAGTCGATATTTCTAGAA 59.346 41.667 0.00 0.00 0.00 2.10
2 3 4.223953 AGGCCCAAGTCGATATTTCTAGA 58.776 43.478 0.00 0.00 0.00 2.43
3 4 4.561105 GAGGCCCAAGTCGATATTTCTAG 58.439 47.826 0.00 0.00 0.00 2.43
4 5 3.323979 GGAGGCCCAAGTCGATATTTCTA 59.676 47.826 0.00 0.00 0.00 2.10
5 6 2.104963 GGAGGCCCAAGTCGATATTTCT 59.895 50.000 0.00 0.00 0.00 2.52
6 7 2.104963 AGGAGGCCCAAGTCGATATTTC 59.895 50.000 0.00 0.00 33.88 2.17
7 8 2.127708 AGGAGGCCCAAGTCGATATTT 58.872 47.619 0.00 0.00 33.88 1.40
8 9 1.807814 AGGAGGCCCAAGTCGATATT 58.192 50.000 0.00 0.00 33.88 1.28
9 10 1.417890 CAAGGAGGCCCAAGTCGATAT 59.582 52.381 0.00 0.00 33.88 1.63
10 11 0.830648 CAAGGAGGCCCAAGTCGATA 59.169 55.000 0.00 0.00 33.88 2.92
11 12 1.604378 CAAGGAGGCCCAAGTCGAT 59.396 57.895 0.00 0.00 33.88 3.59
12 13 2.592993 CCAAGGAGGCCCAAGTCGA 61.593 63.158 0.00 0.00 33.88 4.20
13 14 2.045926 CCAAGGAGGCCCAAGTCG 60.046 66.667 0.00 0.00 33.88 4.18
14 15 0.178961 AAACCAAGGAGGCCCAAGTC 60.179 55.000 0.00 0.00 43.14 3.01
15 16 0.469892 CAAACCAAGGAGGCCCAAGT 60.470 55.000 0.00 0.00 43.14 3.16
16 17 0.469892 ACAAACCAAGGAGGCCCAAG 60.470 55.000 0.00 0.00 43.14 3.61
17 18 0.854218 TACAAACCAAGGAGGCCCAA 59.146 50.000 0.00 0.00 43.14 4.12
18 19 1.080638 ATACAAACCAAGGAGGCCCA 58.919 50.000 0.00 0.00 43.14 5.36
19 20 2.241430 ACTATACAAACCAAGGAGGCCC 59.759 50.000 0.00 0.00 43.14 5.80
20 21 3.646736 ACTATACAAACCAAGGAGGCC 57.353 47.619 0.00 0.00 43.14 5.19
21 22 7.640597 AAATTACTATACAAACCAAGGAGGC 57.359 36.000 0.00 0.00 43.14 4.70
22 23 9.020731 ACAAAATTACTATACAAACCAAGGAGG 57.979 33.333 0.00 0.00 45.67 4.30
82 83 8.740123 TCATACAAACCACAGAGTTCTAAAAA 57.260 30.769 0.00 0.00 0.00 1.94
83 84 8.740123 TTCATACAAACCACAGAGTTCTAAAA 57.260 30.769 0.00 0.00 0.00 1.52
84 85 8.783093 CATTCATACAAACCACAGAGTTCTAAA 58.217 33.333 0.00 0.00 0.00 1.85
85 86 7.390440 CCATTCATACAAACCACAGAGTTCTAA 59.610 37.037 0.00 0.00 0.00 2.10
86 87 6.878923 CCATTCATACAAACCACAGAGTTCTA 59.121 38.462 0.00 0.00 0.00 2.10
87 88 5.707298 CCATTCATACAAACCACAGAGTTCT 59.293 40.000 0.00 0.00 0.00 3.01
88 89 5.705441 TCCATTCATACAAACCACAGAGTTC 59.295 40.000 0.00 0.00 0.00 3.01
89 90 5.630121 TCCATTCATACAAACCACAGAGTT 58.370 37.500 0.00 0.00 0.00 3.01
90 91 5.241403 TCCATTCATACAAACCACAGAGT 57.759 39.130 0.00 0.00 0.00 3.24
91 92 6.183360 GGAATCCATTCATACAAACCACAGAG 60.183 42.308 0.00 0.00 38.53 3.35
92 93 5.652014 GGAATCCATTCATACAAACCACAGA 59.348 40.000 0.00 0.00 38.53 3.41
93 94 5.653769 AGGAATCCATTCATACAAACCACAG 59.346 40.000 0.61 0.00 38.53 3.66
94 95 5.579047 AGGAATCCATTCATACAAACCACA 58.421 37.500 0.61 0.00 38.53 4.17
95 96 7.823745 ATAGGAATCCATTCATACAAACCAC 57.176 36.000 0.61 0.00 36.11 4.16
96 97 7.505585 GGAATAGGAATCCATTCATACAAACCA 59.494 37.037 18.92 0.00 36.11 3.67
97 98 7.725844 AGGAATAGGAATCCATTCATACAAACC 59.274 37.037 18.92 6.61 39.55 3.27
98 99 8.697507 AGGAATAGGAATCCATTCATACAAAC 57.302 34.615 18.92 6.63 39.55 2.93
99 100 9.793259 GTAGGAATAGGAATCCATTCATACAAA 57.207 33.333 25.76 8.52 43.11 2.83
100 101 8.094548 CGTAGGAATAGGAATCCATTCATACAA 58.905 37.037 27.57 10.34 43.48 2.41
101 102 7.234782 ACGTAGGAATAGGAATCCATTCATACA 59.765 37.037 27.57 10.79 43.48 2.29
102 103 7.612677 ACGTAGGAATAGGAATCCATTCATAC 58.387 38.462 23.46 23.46 41.53 2.39
103 104 7.792364 ACGTAGGAATAGGAATCCATTCATA 57.208 36.000 18.92 15.40 39.55 2.15
104 105 6.688073 ACGTAGGAATAGGAATCCATTCAT 57.312 37.500 18.92 16.11 39.55 2.57
105 106 6.210784 CCTACGTAGGAATAGGAATCCATTCA 59.789 42.308 33.93 4.60 46.63 2.57
106 107 6.631962 CCTACGTAGGAATAGGAATCCATTC 58.368 44.000 33.93 8.71 46.63 2.67
107 108 6.607004 CCTACGTAGGAATAGGAATCCATT 57.393 41.667 33.93 0.00 46.63 3.16
128 129 6.389869 TGAAGGATACATAGGAAACCAATCCT 59.610 38.462 0.97 0.97 46.66 3.24
129 130 6.486993 GTGAAGGATACATAGGAAACCAATCC 59.513 42.308 0.00 0.00 38.47 3.01
130 131 7.054124 TGTGAAGGATACATAGGAAACCAATC 58.946 38.462 0.00 0.00 41.41 2.67
131 132 6.969043 TGTGAAGGATACATAGGAAACCAAT 58.031 36.000 0.00 0.00 41.41 3.16
132 133 6.381498 TGTGAAGGATACATAGGAAACCAA 57.619 37.500 0.00 0.00 41.41 3.67
133 134 6.575244 ATGTGAAGGATACATAGGAAACCA 57.425 37.500 0.00 0.00 37.02 3.67
134 135 7.881775 AAATGTGAAGGATACATAGGAAACC 57.118 36.000 0.00 0.00 37.77 3.27
168 169 7.834181 TCAATAGGTCTAAGCTAATGCCTTTTT 59.166 33.333 5.36 0.00 40.80 1.94
169 170 7.346471 TCAATAGGTCTAAGCTAATGCCTTTT 58.654 34.615 5.36 2.37 40.80 2.27
170 171 6.900194 TCAATAGGTCTAAGCTAATGCCTTT 58.100 36.000 5.36 0.00 40.80 3.11
171 172 6.500589 TCAATAGGTCTAAGCTAATGCCTT 57.499 37.500 5.36 0.00 40.80 4.35
172 173 6.500589 TTCAATAGGTCTAAGCTAATGCCT 57.499 37.500 0.00 0.00 40.80 4.75
173 174 7.568199 TTTTCAATAGGTCTAAGCTAATGCC 57.432 36.000 0.00 0.00 40.80 4.40
174 175 8.458843 TGTTTTTCAATAGGTCTAAGCTAATGC 58.541 33.333 0.00 0.00 31.17 3.56
175 176 9.994432 CTGTTTTTCAATAGGTCTAAGCTAATG 57.006 33.333 0.00 0.00 32.07 1.90
176 177 9.959721 TCTGTTTTTCAATAGGTCTAAGCTAAT 57.040 29.630 0.00 0.00 31.35 1.73
177 178 9.787435 TTCTGTTTTTCAATAGGTCTAAGCTAA 57.213 29.630 0.00 0.00 31.35 3.09
178 179 9.959721 ATTCTGTTTTTCAATAGGTCTAAGCTA 57.040 29.630 0.00 0.00 32.21 3.32
179 180 8.870075 ATTCTGTTTTTCAATAGGTCTAAGCT 57.130 30.769 0.00 0.00 0.00 3.74
180 181 9.561270 GAATTCTGTTTTTCAATAGGTCTAAGC 57.439 33.333 0.00 0.00 0.00 3.09
182 183 9.807921 AGGAATTCTGTTTTTCAATAGGTCTAA 57.192 29.630 5.23 0.00 0.00 2.10
184 185 9.981460 ATAGGAATTCTGTTTTTCAATAGGTCT 57.019 29.630 5.23 0.00 0.00 3.85
186 187 9.753674 TGATAGGAATTCTGTTTTTCAATAGGT 57.246 29.630 5.23 0.00 0.00 3.08
214 215 9.941664 GAGAAAACGATATGTCATTTGATTCAT 57.058 29.630 0.00 0.00 0.00 2.57
215 216 8.397906 GGAGAAAACGATATGTCATTTGATTCA 58.602 33.333 0.00 0.00 0.00 2.57
216 217 8.397906 TGGAGAAAACGATATGTCATTTGATTC 58.602 33.333 0.00 0.00 0.00 2.52
217 218 8.279970 TGGAGAAAACGATATGTCATTTGATT 57.720 30.769 0.00 0.00 0.00 2.57
218 219 7.864108 TGGAGAAAACGATATGTCATTTGAT 57.136 32.000 0.00 0.00 0.00 2.57
219 220 7.254421 CGATGGAGAAAACGATATGTCATTTGA 60.254 37.037 0.00 0.00 0.00 2.69
220 221 6.847792 CGATGGAGAAAACGATATGTCATTTG 59.152 38.462 0.00 0.00 0.00 2.32
221 222 6.761242 TCGATGGAGAAAACGATATGTCATTT 59.239 34.615 0.00 0.00 0.00 2.32
222 223 6.201044 GTCGATGGAGAAAACGATATGTCATT 59.799 38.462 0.00 0.00 37.14 2.57
223 224 5.692204 GTCGATGGAGAAAACGATATGTCAT 59.308 40.000 0.00 0.00 37.14 3.06
224 225 5.041287 GTCGATGGAGAAAACGATATGTCA 58.959 41.667 0.00 0.00 37.14 3.58
225 226 5.174035 CAGTCGATGGAGAAAACGATATGTC 59.826 44.000 0.00 0.00 37.14 3.06
226 227 5.043903 CAGTCGATGGAGAAAACGATATGT 58.956 41.667 0.00 0.00 37.14 2.29
227 228 5.281727 TCAGTCGATGGAGAAAACGATATG 58.718 41.667 0.00 0.00 37.14 1.78
228 229 5.515797 TCAGTCGATGGAGAAAACGATAT 57.484 39.130 0.00 0.00 37.14 1.63
229 230 4.976224 TCAGTCGATGGAGAAAACGATA 57.024 40.909 0.00 0.00 37.14 2.92
230 231 3.868757 TCAGTCGATGGAGAAAACGAT 57.131 42.857 0.00 0.00 37.14 3.73
231 232 3.868757 ATCAGTCGATGGAGAAAACGA 57.131 42.857 0.00 0.00 0.00 3.85
232 233 3.484229 GCAATCAGTCGATGGAGAAAACG 60.484 47.826 0.00 0.00 30.13 3.60
233 234 3.686726 AGCAATCAGTCGATGGAGAAAAC 59.313 43.478 0.00 0.00 30.13 2.43
234 235 3.942829 AGCAATCAGTCGATGGAGAAAA 58.057 40.909 0.00 0.00 30.13 2.29
235 236 3.616956 AGCAATCAGTCGATGGAGAAA 57.383 42.857 0.00 0.00 30.13 2.52
236 237 3.491619 GCTAGCAATCAGTCGATGGAGAA 60.492 47.826 10.63 0.00 30.13 2.87
237 238 2.035193 GCTAGCAATCAGTCGATGGAGA 59.965 50.000 10.63 0.00 30.13 3.71
238 239 2.223900 TGCTAGCAATCAGTCGATGGAG 60.224 50.000 16.84 0.00 30.13 3.86
239 240 1.756538 TGCTAGCAATCAGTCGATGGA 59.243 47.619 16.84 0.00 30.13 3.41
240 241 1.863454 GTGCTAGCAATCAGTCGATGG 59.137 52.381 21.29 0.00 30.13 3.51
241 242 1.863454 GGTGCTAGCAATCAGTCGATG 59.137 52.381 21.29 0.00 30.13 3.84
242 243 1.759445 AGGTGCTAGCAATCAGTCGAT 59.241 47.619 21.29 0.00 0.00 3.59
243 244 1.186200 AGGTGCTAGCAATCAGTCGA 58.814 50.000 21.29 0.00 0.00 4.20
244 245 2.015736 AAGGTGCTAGCAATCAGTCG 57.984 50.000 21.29 0.00 0.00 4.18
245 246 2.680339 GGAAAGGTGCTAGCAATCAGTC 59.320 50.000 21.29 12.88 0.00 3.51
246 247 2.307098 AGGAAAGGTGCTAGCAATCAGT 59.693 45.455 21.29 3.77 0.00 3.41
247 248 2.996631 AGGAAAGGTGCTAGCAATCAG 58.003 47.619 21.29 0.00 0.00 2.90
248 249 4.778213 ATAGGAAAGGTGCTAGCAATCA 57.222 40.909 21.29 0.00 30.32 2.57
249 250 5.470437 GGTAATAGGAAAGGTGCTAGCAATC 59.530 44.000 21.29 14.83 30.32 2.67
250 251 5.104109 TGGTAATAGGAAAGGTGCTAGCAAT 60.104 40.000 21.29 8.59 30.32 3.56
251 252 4.226394 TGGTAATAGGAAAGGTGCTAGCAA 59.774 41.667 21.29 0.58 30.32 3.91
252 253 3.778075 TGGTAATAGGAAAGGTGCTAGCA 59.222 43.478 14.93 14.93 30.32 3.49
253 254 4.417426 TGGTAATAGGAAAGGTGCTAGC 57.583 45.455 8.10 8.10 30.32 3.42
254 255 6.042093 TGAGATGGTAATAGGAAAGGTGCTAG 59.958 42.308 0.00 0.00 30.32 3.42
255 256 5.903010 TGAGATGGTAATAGGAAAGGTGCTA 59.097 40.000 0.00 0.00 31.51 3.49
256 257 4.721776 TGAGATGGTAATAGGAAAGGTGCT 59.278 41.667 0.00 0.00 0.00 4.40
257 258 5.036117 TGAGATGGTAATAGGAAAGGTGC 57.964 43.478 0.00 0.00 0.00 5.01
258 259 7.938140 TTTTGAGATGGTAATAGGAAAGGTG 57.062 36.000 0.00 0.00 0.00 4.00
283 284 4.639334 GGAGAGGTCGTAGGAAAGTTTTT 58.361 43.478 0.00 0.00 0.00 1.94
284 285 3.305881 CGGAGAGGTCGTAGGAAAGTTTT 60.306 47.826 0.00 0.00 0.00 2.43
285 286 2.230750 CGGAGAGGTCGTAGGAAAGTTT 59.769 50.000 0.00 0.00 0.00 2.66
286 287 1.817447 CGGAGAGGTCGTAGGAAAGTT 59.183 52.381 0.00 0.00 0.00 2.66
287 288 1.004044 TCGGAGAGGTCGTAGGAAAGT 59.996 52.381 0.00 0.00 0.00 2.66
288 289 1.747709 TCGGAGAGGTCGTAGGAAAG 58.252 55.000 0.00 0.00 0.00 2.62
289 290 2.431954 ATCGGAGAGGTCGTAGGAAA 57.568 50.000 0.00 0.00 43.63 3.13
290 291 2.431954 AATCGGAGAGGTCGTAGGAA 57.568 50.000 0.00 0.00 43.63 3.36
291 292 2.431954 AAATCGGAGAGGTCGTAGGA 57.568 50.000 0.00 0.00 43.63 2.94
292 293 2.426024 TGAAAATCGGAGAGGTCGTAGG 59.574 50.000 0.00 0.00 43.63 3.18
293 294 3.489398 CCTGAAAATCGGAGAGGTCGTAG 60.489 52.174 0.00 0.00 43.63 3.51
294 295 2.426024 CCTGAAAATCGGAGAGGTCGTA 59.574 50.000 0.00 0.00 43.63 3.43
295 296 1.204941 CCTGAAAATCGGAGAGGTCGT 59.795 52.381 0.00 0.00 43.63 4.34
296 297 1.927895 CCTGAAAATCGGAGAGGTCG 58.072 55.000 0.00 0.00 43.63 4.79
297 298 1.066143 TGCCTGAAAATCGGAGAGGTC 60.066 52.381 0.00 0.00 43.63 3.85
298 299 0.984230 TGCCTGAAAATCGGAGAGGT 59.016 50.000 0.00 0.00 43.63 3.85
299 300 1.740025 GTTGCCTGAAAATCGGAGAGG 59.260 52.381 0.00 0.00 43.63 3.69
300 301 2.704572 AGTTGCCTGAAAATCGGAGAG 58.295 47.619 0.00 0.00 43.63 3.20
301 302 2.859165 AGTTGCCTGAAAATCGGAGA 57.141 45.000 0.00 0.00 45.75 3.71
302 303 4.215399 TGTTAAGTTGCCTGAAAATCGGAG 59.785 41.667 0.00 0.00 0.00 4.63
303 304 4.138290 TGTTAAGTTGCCTGAAAATCGGA 58.862 39.130 0.00 0.00 0.00 4.55
304 305 4.497473 TGTTAAGTTGCCTGAAAATCGG 57.503 40.909 0.00 0.00 0.00 4.18
305 306 5.277825 TGTTGTTAAGTTGCCTGAAAATCG 58.722 37.500 0.00 0.00 0.00 3.34
306 307 5.175673 GCTGTTGTTAAGTTGCCTGAAAATC 59.824 40.000 0.00 0.00 0.00 2.17
307 308 5.049828 GCTGTTGTTAAGTTGCCTGAAAAT 58.950 37.500 0.00 0.00 0.00 1.82
308 309 4.159506 AGCTGTTGTTAAGTTGCCTGAAAA 59.840 37.500 0.00 0.00 0.00 2.29
309 310 3.699038 AGCTGTTGTTAAGTTGCCTGAAA 59.301 39.130 0.00 0.00 0.00 2.69
310 311 3.287222 AGCTGTTGTTAAGTTGCCTGAA 58.713 40.909 0.00 0.00 0.00 3.02
311 312 2.930950 AGCTGTTGTTAAGTTGCCTGA 58.069 42.857 0.00 0.00 0.00 3.86
312 313 5.156355 CAATAGCTGTTGTTAAGTTGCCTG 58.844 41.667 14.56 0.00 0.00 4.85
313 314 4.321230 GCAATAGCTGTTGTTAAGTTGCCT 60.321 41.667 22.26 0.00 35.83 4.75
314 315 3.920412 GCAATAGCTGTTGTTAAGTTGCC 59.080 43.478 22.26 1.16 35.83 4.52
315 316 3.603770 CGCAATAGCTGTTGTTAAGTTGC 59.396 43.478 22.26 7.18 39.10 4.17
316 317 5.029650 TCGCAATAGCTGTTGTTAAGTTG 57.970 39.130 22.26 6.38 39.10 3.16
317 318 5.445939 CGATCGCAATAGCTGTTGTTAAGTT 60.446 40.000 22.26 8.58 39.10 2.66
318 319 4.032900 CGATCGCAATAGCTGTTGTTAAGT 59.967 41.667 22.26 6.72 39.10 2.24
319 320 4.267690 TCGATCGCAATAGCTGTTGTTAAG 59.732 41.667 22.26 12.55 39.10 1.85
320 321 4.177783 TCGATCGCAATAGCTGTTGTTAA 58.822 39.130 22.26 10.12 39.10 2.01
321 322 3.776340 TCGATCGCAATAGCTGTTGTTA 58.224 40.909 22.26 12.35 39.10 2.41
322 323 2.604914 CTCGATCGCAATAGCTGTTGTT 59.395 45.455 22.26 9.53 39.10 2.83
323 324 2.159240 TCTCGATCGCAATAGCTGTTGT 60.159 45.455 22.26 4.89 39.10 3.32
324 325 2.463876 TCTCGATCGCAATAGCTGTTG 58.536 47.619 18.06 18.06 39.10 3.33
325 326 2.871182 TCTCGATCGCAATAGCTGTT 57.129 45.000 11.09 0.00 39.10 3.16
326 327 3.055591 CAATCTCGATCGCAATAGCTGT 58.944 45.455 11.09 0.00 39.10 4.40
327 328 2.159867 GCAATCTCGATCGCAATAGCTG 60.160 50.000 11.09 4.92 39.10 4.24
328 329 2.064762 GCAATCTCGATCGCAATAGCT 58.935 47.619 11.09 0.00 39.10 3.32
329 330 1.127582 GGCAATCTCGATCGCAATAGC 59.872 52.381 11.09 11.32 37.42 2.97
330 331 1.728971 GGGCAATCTCGATCGCAATAG 59.271 52.381 11.09 2.33 0.00 1.73
331 332 1.069978 TGGGCAATCTCGATCGCAATA 59.930 47.619 11.09 0.00 0.00 1.90
332 333 0.179048 TGGGCAATCTCGATCGCAAT 60.179 50.000 11.09 3.07 0.00 3.56
333 334 0.179048 ATGGGCAATCTCGATCGCAA 60.179 50.000 11.09 0.32 0.00 4.85
334 335 0.881600 CATGGGCAATCTCGATCGCA 60.882 55.000 11.09 0.00 0.00 5.10
335 336 0.882042 ACATGGGCAATCTCGATCGC 60.882 55.000 11.09 0.00 0.00 4.58
336 337 0.863799 CACATGGGCAATCTCGATCG 59.136 55.000 9.36 9.36 0.00 3.69
337 338 1.202687 TCCACATGGGCAATCTCGATC 60.203 52.381 0.00 0.00 36.21 3.69
338 339 0.839277 TCCACATGGGCAATCTCGAT 59.161 50.000 0.00 0.00 36.21 3.59
339 340 0.617935 TTCCACATGGGCAATCTCGA 59.382 50.000 0.00 0.00 36.21 4.04
340 341 1.335810 CATTCCACATGGGCAATCTCG 59.664 52.381 0.00 0.00 36.21 4.04
341 342 1.684983 CCATTCCACATGGGCAATCTC 59.315 52.381 0.00 0.00 35.58 2.75
342 343 1.288633 TCCATTCCACATGGGCAATCT 59.711 47.619 0.00 0.00 39.60 2.40
343 344 1.684983 CTCCATTCCACATGGGCAATC 59.315 52.381 0.00 0.00 39.60 2.67
344 345 1.784358 CTCCATTCCACATGGGCAAT 58.216 50.000 0.00 0.00 39.60 3.56
345 346 0.971959 GCTCCATTCCACATGGGCAA 60.972 55.000 0.00 0.00 39.60 4.52
346 347 1.380246 GCTCCATTCCACATGGGCA 60.380 57.895 0.00 0.00 39.60 5.36
347 348 1.380246 TGCTCCATTCCACATGGGC 60.380 57.895 0.00 4.62 39.60 5.36
348 349 0.033796 ACTGCTCCATTCCACATGGG 60.034 55.000 0.00 0.00 39.60 4.00
349 350 1.340308 TGACTGCTCCATTCCACATGG 60.340 52.381 0.00 0.00 40.48 3.66
350 351 2.118313 TGACTGCTCCATTCCACATG 57.882 50.000 0.00 0.00 0.00 3.21
351 352 2.885135 TTGACTGCTCCATTCCACAT 57.115 45.000 0.00 0.00 0.00 3.21
352 353 2.158623 ACTTTGACTGCTCCATTCCACA 60.159 45.455 0.00 0.00 0.00 4.17
353 354 2.227388 CACTTTGACTGCTCCATTCCAC 59.773 50.000 0.00 0.00 0.00 4.02
354 355 2.507484 CACTTTGACTGCTCCATTCCA 58.493 47.619 0.00 0.00 0.00 3.53
355 356 1.815003 CCACTTTGACTGCTCCATTCC 59.185 52.381 0.00 0.00 0.00 3.01
356 357 2.783135 TCCACTTTGACTGCTCCATTC 58.217 47.619 0.00 0.00 0.00 2.67
357 358 2.957402 TCCACTTTGACTGCTCCATT 57.043 45.000 0.00 0.00 0.00 3.16
358 359 2.306805 TGATCCACTTTGACTGCTCCAT 59.693 45.455 0.00 0.00 0.00 3.41
359 360 1.699083 TGATCCACTTTGACTGCTCCA 59.301 47.619 0.00 0.00 0.00 3.86
360 361 2.479566 TGATCCACTTTGACTGCTCC 57.520 50.000 0.00 0.00 0.00 4.70
361 362 3.057946 GGTTTGATCCACTTTGACTGCTC 60.058 47.826 0.00 0.00 0.00 4.26
362 363 2.887152 GGTTTGATCCACTTTGACTGCT 59.113 45.455 0.00 0.00 0.00 4.24
379 380 2.173519 CACATGCAGAAGGATGGGTTT 58.826 47.619 0.00 0.00 46.67 3.27
381 382 3.583054 CACATGCAGAAGGATGGGT 57.417 52.632 0.00 0.00 46.67 4.51
396 400 0.380024 CCGTTGTGACAATGTGCACA 59.620 50.000 24.08 24.08 42.73 4.57
397 401 0.660488 TCCGTTGTGACAATGTGCAC 59.340 50.000 15.61 10.75 35.63 4.57
426 430 0.248012 TCAACACACACTGTCACGGT 59.752 50.000 0.00 0.00 30.29 4.83
427 431 0.930310 CTCAACACACACTGTCACGG 59.070 55.000 0.00 0.00 30.29 4.94
428 432 0.301687 GCTCAACACACACTGTCACG 59.698 55.000 0.00 0.00 30.29 4.35
429 433 1.328680 CTGCTCAACACACACTGTCAC 59.671 52.381 0.00 0.00 30.29 3.67
430 434 1.655484 CTGCTCAACACACACTGTCA 58.345 50.000 0.00 0.00 30.29 3.58
431 435 0.940126 CCTGCTCAACACACACTGTC 59.060 55.000 0.00 0.00 30.29 3.51
432 436 0.464373 CCCTGCTCAACACACACTGT 60.464 55.000 0.00 0.00 32.89 3.55
433 437 0.464373 ACCCTGCTCAACACACACTG 60.464 55.000 0.00 0.00 0.00 3.66
434 438 0.255890 AACCCTGCTCAACACACACT 59.744 50.000 0.00 0.00 0.00 3.55
458 463 0.957362 GCTTTCTGTTGGCTTCTGCT 59.043 50.000 0.00 0.00 39.59 4.24
462 467 1.813178 GTAGGGCTTTCTGTTGGCTTC 59.187 52.381 0.00 0.00 0.00 3.86
499 507 2.883386 CGATCTTACGGCCTACTAACCT 59.117 50.000 0.00 0.00 0.00 3.50
501 509 3.812053 TCTCGATCTTACGGCCTACTAAC 59.188 47.826 0.00 0.00 0.00 2.34
608 616 7.519004 ACCATATTATTGGGGAGATTCTTCTCT 59.481 37.037 3.26 0.00 42.59 3.10
642 650 7.895962 AGAGAGGTAATATGGTGATATGTGCTA 59.104 37.037 0.00 0.00 0.00 3.49
657 665 5.221843 GCTGGAGAGAGAGAGAGAGGTAATA 60.222 48.000 0.00 0.00 0.00 0.98
660 668 2.438021 GCTGGAGAGAGAGAGAGAGGTA 59.562 54.545 0.00 0.00 0.00 3.08
663 671 1.492176 AGGCTGGAGAGAGAGAGAGAG 59.508 57.143 0.00 0.00 0.00 3.20
664 672 1.490490 GAGGCTGGAGAGAGAGAGAGA 59.510 57.143 0.00 0.00 0.00 3.10
672 680 0.467106 CGATGAGGAGGCTGGAGAGA 60.467 60.000 0.00 0.00 0.00 3.10
676 684 0.829602 GGATCGATGAGGAGGCTGGA 60.830 60.000 0.54 0.00 0.00 3.86
756 764 2.888863 CGCTCGCTTTCCTCCTCT 59.111 61.111 0.00 0.00 0.00 3.69
824 833 4.868116 GGTGTGGTGTGGTGCGGT 62.868 66.667 0.00 0.00 0.00 5.68
837 846 1.068741 GTTAGCTAGGCTATGCGGTGT 59.931 52.381 0.00 0.00 41.01 4.16
926 944 1.653094 TTTTAATGGCCGGCGAGCTG 61.653 55.000 22.54 0.00 0.00 4.24
927 945 0.751643 ATTTTAATGGCCGGCGAGCT 60.752 50.000 22.54 10.82 0.00 4.09
928 946 0.317854 GATTTTAATGGCCGGCGAGC 60.318 55.000 22.54 10.47 0.00 5.03
1113 1131 2.112297 GCGTTGGTCTGGTGGGAA 59.888 61.111 0.00 0.00 0.00 3.97
1458 1491 3.702048 TTGAGGTCCGGCGGGAAG 61.702 66.667 27.98 0.00 46.08 3.46
1626 1659 0.746923 TGAGCATCCACATCAGCTGC 60.747 55.000 9.47 0.00 37.48 5.25
1686 1719 1.591703 CTGCAGGAAGTAGGACGCA 59.408 57.895 5.57 0.00 0.00 5.24
2427 2460 0.389426 TGTAAGCCGAGAAGAACCGC 60.389 55.000 0.00 0.00 0.00 5.68
2658 2691 2.104331 CGATACCGGCGCAGAAGT 59.896 61.111 10.83 1.65 0.00 3.01
2673 2706 4.458829 ATCGACCAGCCCTCCCGA 62.459 66.667 0.00 0.00 0.00 5.14
2806 2843 2.949106 GCACGTGCATTGCTGACT 59.051 55.556 34.52 0.00 41.59 3.41
2957 3006 1.680522 CCCACCTCCTCGATCACCTG 61.681 65.000 0.00 0.00 0.00 4.00
3031 3080 2.231820 GCGTACGCCAAGAACTTGT 58.768 52.632 29.51 0.00 38.85 3.16
3107 3156 9.067986 AGGAAGAAGAATTTGTTAACCTTACAG 57.932 33.333 2.48 0.00 0.00 2.74
3119 3168 5.846203 TGCTCCAAAAGGAAGAAGAATTTG 58.154 37.500 0.00 0.00 0.00 2.32
3204 3257 9.449550 TGTAAATCATGAATCGATAATGCAAAC 57.550 29.630 13.60 10.19 0.00 2.93
3232 3298 5.888724 TCCCAACAAGACAAGAAACATGTAA 59.111 36.000 0.00 0.00 0.00 2.41
3234 3300 4.277476 TCCCAACAAGACAAGAAACATGT 58.723 39.130 0.00 0.00 0.00 3.21
3236 3302 4.895297 ACATCCCAACAAGACAAGAAACAT 59.105 37.500 0.00 0.00 0.00 2.71
3237 3303 4.277476 ACATCCCAACAAGACAAGAAACA 58.723 39.130 0.00 0.00 0.00 2.83
3238 3304 4.338118 TGACATCCCAACAAGACAAGAAAC 59.662 41.667 0.00 0.00 0.00 2.78
3239 3305 4.531854 TGACATCCCAACAAGACAAGAAA 58.468 39.130 0.00 0.00 0.00 2.52
3240 3306 4.136796 CTGACATCCCAACAAGACAAGAA 58.863 43.478 0.00 0.00 0.00 2.52
3241 3307 3.136443 ACTGACATCCCAACAAGACAAGA 59.864 43.478 0.00 0.00 0.00 3.02
3321 3387 5.769662 AGCTTTAGTGGTTCATGTTTGATGA 59.230 36.000 0.00 0.00 0.00 2.92
3367 3433 6.147164 TCCTGAAACAAATAGAAACTAGCACG 59.853 38.462 0.00 0.00 0.00 5.34
3373 3443 9.525826 AGATCATTCCTGAAACAAATAGAAACT 57.474 29.630 0.00 0.00 34.37 2.66
3426 3496 1.261619 CTGAAAACGGGATATGCGAGC 59.738 52.381 0.00 0.00 0.00 5.03
3429 3499 3.303132 GCTAACTGAAAACGGGATATGCG 60.303 47.826 0.00 0.00 0.00 4.73
3431 3501 7.352739 GTTATGCTAACTGAAAACGGGATATG 58.647 38.462 0.00 0.00 0.00 1.78
3435 3505 4.004982 GGTTATGCTAACTGAAAACGGGA 58.995 43.478 6.18 0.00 0.00 5.14
3439 3509 7.683437 AGTAAGGGTTATGCTAACTGAAAAC 57.317 36.000 6.18 0.00 0.00 2.43
3440 3510 8.700439 AAAGTAAGGGTTATGCTAACTGAAAA 57.300 30.769 6.18 0.00 0.00 2.29
3444 3514 7.280205 CAGGTAAAGTAAGGGTTATGCTAACTG 59.720 40.741 6.18 0.00 0.00 3.16
3445 3515 7.181485 TCAGGTAAAGTAAGGGTTATGCTAACT 59.819 37.037 6.18 0.00 0.00 2.24
3447 3517 7.499200 TCAGGTAAAGTAAGGGTTATGCTAA 57.501 36.000 0.00 0.00 0.00 3.09
3450 3520 5.763698 GGATCAGGTAAAGTAAGGGTTATGC 59.236 44.000 0.00 0.00 0.00 3.14
3451 3521 6.895782 TGGATCAGGTAAAGTAAGGGTTATG 58.104 40.000 0.00 0.00 0.00 1.90
3452 3522 7.519347 TTGGATCAGGTAAAGTAAGGGTTAT 57.481 36.000 0.00 0.00 0.00 1.89
3453 3523 6.956102 TTGGATCAGGTAAAGTAAGGGTTA 57.044 37.500 0.00 0.00 0.00 2.85
3454 3524 5.853572 TTGGATCAGGTAAAGTAAGGGTT 57.146 39.130 0.00 0.00 0.00 4.11
3455 3525 5.853572 TTTGGATCAGGTAAAGTAAGGGT 57.146 39.130 0.00 0.00 0.00 4.34
3457 3527 7.665974 ACTCTTTTTGGATCAGGTAAAGTAAGG 59.334 37.037 0.00 0.00 0.00 2.69
3461 3558 5.770162 CCACTCTTTTTGGATCAGGTAAAGT 59.230 40.000 0.00 0.00 36.02 2.66
3465 3562 3.073798 TGCCACTCTTTTTGGATCAGGTA 59.926 43.478 0.00 0.00 36.02 3.08
3487 3584 6.735556 AGATCCCTTTGAACATTGACCTAAT 58.264 36.000 0.00 0.00 0.00 1.73
3488 3585 6.139679 AGATCCCTTTGAACATTGACCTAA 57.860 37.500 0.00 0.00 0.00 2.69
3515 3612 4.961730 AGTTTGTATCAGCCAGAGATCTCT 59.038 41.667 19.92 19.92 41.37 3.10
3524 3621 5.682471 GCTCTAGCTTAGTTTGTATCAGCCA 60.682 44.000 0.00 0.00 38.21 4.75
3531 3628 7.046033 GGTATTTGGCTCTAGCTTAGTTTGTA 58.954 38.462 0.00 0.00 41.70 2.41
3537 3661 3.060602 GCGGTATTTGGCTCTAGCTTAG 58.939 50.000 0.00 0.00 41.70 2.18
3546 3670 0.546122 TGGATGAGCGGTATTTGGCT 59.454 50.000 0.00 0.00 43.42 4.75
3557 3681 1.096386 CAGAAGCTGCCTGGATGAGC 61.096 60.000 0.00 0.84 0.00 4.26
3571 3695 7.976135 ATAATTAAGGTCTATGCAGCAGAAG 57.024 36.000 0.00 0.79 0.00 2.85
3595 3719 9.438228 TCAATGAAACTCCAACACGTATTATTA 57.562 29.630 0.00 0.00 0.00 0.98
3596 3720 8.330466 TCAATGAAACTCCAACACGTATTATT 57.670 30.769 0.00 0.00 0.00 1.40
3601 3725 4.951254 TCTCAATGAAACTCCAACACGTA 58.049 39.130 0.00 0.00 0.00 3.57
3602 3726 3.804036 TCTCAATGAAACTCCAACACGT 58.196 40.909 0.00 0.00 0.00 4.49
3603 3727 5.049474 TCAATCTCAATGAAACTCCAACACG 60.049 40.000 0.00 0.00 0.00 4.49
3604 3728 6.205464 TCTCAATCTCAATGAAACTCCAACAC 59.795 38.462 0.00 0.00 0.00 3.32
3605 3729 6.298361 TCTCAATCTCAATGAAACTCCAACA 58.702 36.000 0.00 0.00 0.00 3.33
3606 3730 6.429385 ACTCTCAATCTCAATGAAACTCCAAC 59.571 38.462 0.00 0.00 0.00 3.77
3611 3735 6.528321 TGTCACTCTCAATCTCAATGAAACT 58.472 36.000 0.00 0.00 0.00 2.66
3659 3785 9.605275 CATTTCACCAGATATTGTCTTCTAGAA 57.395 33.333 4.81 4.81 34.00 2.10
3660 3786 8.206867 CCATTTCACCAGATATTGTCTTCTAGA 58.793 37.037 0.00 0.00 34.00 2.43
3674 3800 2.637382 TGCTCTGTACCATTTCACCAGA 59.363 45.455 0.00 0.00 0.00 3.86
3702 3828 7.910162 ACAACGACAACAAATCATTATAGCATC 59.090 33.333 0.00 0.00 0.00 3.91
3703 3829 7.761409 ACAACGACAACAAATCATTATAGCAT 58.239 30.769 0.00 0.00 0.00 3.79
3704 3830 7.119116 AGACAACGACAACAAATCATTATAGCA 59.881 33.333 0.00 0.00 0.00 3.49
3705 3831 7.464358 AGACAACGACAACAAATCATTATAGC 58.536 34.615 0.00 0.00 0.00 2.97
3706 3832 9.825972 AAAGACAACGACAACAAATCATTATAG 57.174 29.630 0.00 0.00 0.00 1.31
3707 3833 9.605955 CAAAGACAACGACAACAAATCATTATA 57.394 29.630 0.00 0.00 0.00 0.98
3709 3835 6.915300 CCAAAGACAACGACAACAAATCATTA 59.085 34.615 0.00 0.00 0.00 1.90
3710 3836 5.748152 CCAAAGACAACGACAACAAATCATT 59.252 36.000 0.00 0.00 0.00 2.57
3711 3837 5.163561 ACCAAAGACAACGACAACAAATCAT 60.164 36.000 0.00 0.00 0.00 2.45
3712 3838 4.156922 ACCAAAGACAACGACAACAAATCA 59.843 37.500 0.00 0.00 0.00 2.57
3713 3839 4.668289 ACCAAAGACAACGACAACAAATC 58.332 39.130 0.00 0.00 0.00 2.17
3714 3840 4.439563 GGACCAAAGACAACGACAACAAAT 60.440 41.667 0.00 0.00 0.00 2.32
3719 3845 2.404923 TGGACCAAAGACAACGACAA 57.595 45.000 0.00 0.00 0.00 3.18
3724 3850 2.034685 GGCTTCTTGGACCAAAGACAAC 59.965 50.000 8.59 0.00 35.92 3.32
3727 3853 0.875059 CGGCTTCTTGGACCAAAGAC 59.125 55.000 8.59 5.00 35.92 3.01
3742 3868 5.010617 AGACACAACAAAATTTTATCCGGCT 59.989 36.000 2.44 0.00 0.00 5.52
3753 3879 5.079643 AGCTTGGGATAGACACAACAAAAT 58.920 37.500 0.00 0.00 36.94 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.