Multiple sequence alignment - TraesCS2B01G214300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G214300 chr2B 100.000 2967 0 0 1 2967 199124426 199121460 0.000000e+00 5480
1 TraesCS2B01G214300 chr2A 88.194 2990 161 101 47 2941 159938911 159936019 0.000000e+00 3389
2 TraesCS2B01G214300 chr2D 92.682 1831 62 33 1160 2945 141191647 141193450 0.000000e+00 2573
3 TraesCS2B01G214300 chr2D 83.617 940 52 37 47 931 141190595 141191487 0.000000e+00 789
4 TraesCS2B01G214300 chr2D 94.340 106 6 0 975 1080 141191502 141191607 2.370000e-36 163


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G214300 chr2B 199121460 199124426 2966 True 5480 5480 100.000 1 2967 1 chr2B.!!$R1 2966
1 TraesCS2B01G214300 chr2A 159936019 159938911 2892 True 3389 3389 88.194 47 2941 1 chr2A.!!$R1 2894
2 TraesCS2B01G214300 chr2D 141190595 141193450 2855 False 1175 2573 90.213 47 2945 3 chr2D.!!$F1 2898

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.040425 CAAGAAAACGAACGCCCTGG 60.040 55.0 0.00 0.00 0.00 4.45 F
361 400 0.248907 ACATAACATCTCCGTCCGCG 60.249 55.0 0.00 0.00 37.95 6.46 F
1108 1203 0.387878 ATGCGCTCGATCGATCTTCC 60.388 55.0 19.78 9.41 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1092 1187 0.109964 GGAGGAAGATCGATCGAGCG 60.110 60.0 25.86 18.51 35.44 5.03 R
1191 1309 0.179059 GCAAACCCCAAACCAACAGG 60.179 55.0 0.00 0.00 0.00 4.00 R
2705 2878 0.030638 CCAACCTGCACTTTTCACCG 59.969 55.0 0.00 0.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.445832 TCCCGGCAGCAGTAGTAA 57.554 55.556 0.00 0.00 0.00 2.24
18 19 2.910579 TCCCGGCAGCAGTAGTAAT 58.089 52.632 0.00 0.00 0.00 1.89
19 20 0.750850 TCCCGGCAGCAGTAGTAATC 59.249 55.000 0.00 0.00 0.00 1.75
20 21 0.464036 CCCGGCAGCAGTAGTAATCA 59.536 55.000 0.00 0.00 0.00 2.57
21 22 1.134521 CCCGGCAGCAGTAGTAATCAA 60.135 52.381 0.00 0.00 0.00 2.57
22 23 2.205074 CCGGCAGCAGTAGTAATCAAG 58.795 52.381 0.00 0.00 0.00 3.02
23 24 2.159099 CCGGCAGCAGTAGTAATCAAGA 60.159 50.000 0.00 0.00 0.00 3.02
24 25 3.521560 CGGCAGCAGTAGTAATCAAGAA 58.478 45.455 0.00 0.00 0.00 2.52
25 26 3.932710 CGGCAGCAGTAGTAATCAAGAAA 59.067 43.478 0.00 0.00 0.00 2.52
26 27 4.391830 CGGCAGCAGTAGTAATCAAGAAAA 59.608 41.667 0.00 0.00 0.00 2.29
27 28 5.631992 GGCAGCAGTAGTAATCAAGAAAAC 58.368 41.667 0.00 0.00 0.00 2.43
28 29 5.316770 GCAGCAGTAGTAATCAAGAAAACG 58.683 41.667 0.00 0.00 0.00 3.60
29 30 5.120208 GCAGCAGTAGTAATCAAGAAAACGA 59.880 40.000 0.00 0.00 0.00 3.85
30 31 6.347402 GCAGCAGTAGTAATCAAGAAAACGAA 60.347 38.462 0.00 0.00 0.00 3.85
31 32 7.010023 CAGCAGTAGTAATCAAGAAAACGAAC 58.990 38.462 0.00 0.00 0.00 3.95
32 33 6.007677 GCAGTAGTAATCAAGAAAACGAACG 58.992 40.000 0.00 0.00 0.00 3.95
33 34 6.007677 CAGTAGTAATCAAGAAAACGAACGC 58.992 40.000 0.00 0.00 0.00 4.84
34 35 4.400036 AGTAATCAAGAAAACGAACGCC 57.600 40.909 0.00 0.00 0.00 5.68
35 36 2.699251 AATCAAGAAAACGAACGCCC 57.301 45.000 0.00 0.00 0.00 6.13
36 37 1.892209 ATCAAGAAAACGAACGCCCT 58.108 45.000 0.00 0.00 0.00 5.19
37 38 0.941542 TCAAGAAAACGAACGCCCTG 59.058 50.000 0.00 0.00 0.00 4.45
38 39 0.040425 CAAGAAAACGAACGCCCTGG 60.040 55.000 0.00 0.00 0.00 4.45
39 40 1.170290 AAGAAAACGAACGCCCTGGG 61.170 55.000 8.86 8.86 0.00 4.45
40 41 1.895231 GAAAACGAACGCCCTGGGT 60.895 57.895 15.56 0.00 0.00 4.51
41 42 2.125202 GAAAACGAACGCCCTGGGTG 62.125 60.000 24.45 24.45 39.41 4.61
43 44 4.619227 ACGAACGCCCTGGGTGTG 62.619 66.667 31.27 21.72 46.56 3.82
44 45 4.308458 CGAACGCCCTGGGTGTGA 62.308 66.667 31.27 0.00 46.56 3.58
45 46 2.112297 GAACGCCCTGGGTGTGAA 59.888 61.111 31.27 0.00 46.56 3.18
57 58 1.597663 GGGTGTGAAGTGTGAACGAAG 59.402 52.381 0.00 0.00 0.00 3.79
59 60 1.663643 GTGTGAAGTGTGAACGAAGCA 59.336 47.619 0.00 0.00 0.00 3.91
160 169 1.889829 CCAAATCACCCGCTTAACCAA 59.110 47.619 0.00 0.00 0.00 3.67
166 175 4.160635 CCGCTTAACCAAGGCGCG 62.161 66.667 0.00 0.00 46.29 6.86
179 188 2.036006 GGCGCGTAATCAACCACCA 61.036 57.895 8.43 0.00 0.00 4.17
180 189 1.133869 GCGCGTAATCAACCACCAC 59.866 57.895 8.43 0.00 0.00 4.16
181 190 1.791662 CGCGTAATCAACCACCACC 59.208 57.895 0.00 0.00 0.00 4.61
183 192 1.641123 GCGTAATCAACCACCACCGG 61.641 60.000 0.00 0.00 0.00 5.28
185 194 1.376166 TAATCAACCACCACCGGCG 60.376 57.895 0.00 0.00 0.00 6.46
220 230 4.699522 GACAGCCACCCCCACGAC 62.700 72.222 0.00 0.00 0.00 4.34
291 301 1.414378 CTGTCATACACACGACGCAA 58.586 50.000 0.00 0.00 34.78 4.85
304 329 1.217882 GACGCAACACAAGTACAGCT 58.782 50.000 0.00 0.00 0.00 4.24
346 385 1.269723 CGATGCTTAGCGAGGGACATA 59.730 52.381 0.00 0.00 0.00 2.29
347 386 2.288213 CGATGCTTAGCGAGGGACATAA 60.288 50.000 0.00 0.00 0.00 1.90
349 388 1.828595 TGCTTAGCGAGGGACATAACA 59.171 47.619 0.00 0.00 0.00 2.41
350 389 2.434336 TGCTTAGCGAGGGACATAACAT 59.566 45.455 0.00 0.00 0.00 2.71
351 390 3.060602 GCTTAGCGAGGGACATAACATC 58.939 50.000 0.00 0.00 0.00 3.06
356 395 1.681793 CGAGGGACATAACATCTCCGT 59.318 52.381 0.00 0.00 0.00 4.69
361 400 0.248907 ACATAACATCTCCGTCCGCG 60.249 55.000 0.00 0.00 37.95 6.46
608 682 4.103103 GGGAACTGGAAAGCGCGC 62.103 66.667 26.66 26.66 0.00 6.86
624 698 2.659610 GCGCTGGCTATCCCCTAG 59.340 66.667 0.00 0.00 35.83 3.02
635 715 3.119280 GCTATCCCCTAGAGCGATCTTTC 60.119 52.174 9.21 0.00 31.69 2.62
636 716 2.757894 TCCCCTAGAGCGATCTTTCT 57.242 50.000 9.21 0.00 0.00 2.52
637 717 3.033659 TCCCCTAGAGCGATCTTTCTT 57.966 47.619 9.21 0.00 0.00 2.52
655 744 6.543831 TCTTTCTTTGTTCTCTTTGCTAAGCT 59.456 34.615 2.75 0.00 0.00 3.74
684 773 0.958822 CCCGCCATTAAACTATGCCC 59.041 55.000 0.00 0.00 0.00 5.36
724 816 0.407918 TTCGGCCCAATCCTTCCTTT 59.592 50.000 0.00 0.00 0.00 3.11
725 817 0.407918 TCGGCCCAATCCTTCCTTTT 59.592 50.000 0.00 0.00 0.00 2.27
726 818 0.817654 CGGCCCAATCCTTCCTTTTC 59.182 55.000 0.00 0.00 0.00 2.29
727 819 1.195115 GGCCCAATCCTTCCTTTTCC 58.805 55.000 0.00 0.00 0.00 3.13
728 820 1.273267 GGCCCAATCCTTCCTTTTCCT 60.273 52.381 0.00 0.00 0.00 3.36
729 821 2.540383 GCCCAATCCTTCCTTTTCCTT 58.460 47.619 0.00 0.00 0.00 3.36
730 822 2.497675 GCCCAATCCTTCCTTTTCCTTC 59.502 50.000 0.00 0.00 0.00 3.46
731 823 3.099905 CCCAATCCTTCCTTTTCCTTCC 58.900 50.000 0.00 0.00 0.00 3.46
732 824 3.245766 CCCAATCCTTCCTTTTCCTTCCT 60.246 47.826 0.00 0.00 0.00 3.36
733 825 4.420206 CCAATCCTTCCTTTTCCTTCCTT 58.580 43.478 0.00 0.00 0.00 3.36
755 849 4.404098 CCTGCCCGTACACCACCC 62.404 72.222 0.00 0.00 0.00 4.61
772 866 3.756783 CTCCGTCCCTCCCTCCCT 61.757 72.222 0.00 0.00 0.00 4.20
773 867 3.742248 CTCCGTCCCTCCCTCCCTC 62.742 73.684 0.00 0.00 0.00 4.30
776 870 3.369388 GTCCCTCCCTCCCTCCCT 61.369 72.222 0.00 0.00 0.00 4.20
777 871 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
778 872 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
779 873 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
780 874 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
781 875 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
782 876 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
783 877 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
784 878 3.039526 CTCCCTCCCTCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
785 879 3.036959 TCCCTCCCTCCCTCCCTC 61.037 72.222 0.00 0.00 0.00 4.30
786 880 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
787 881 4.179599 CCTCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
792 886 4.101077 CTCCCTCCCTCCCCTGCT 62.101 72.222 0.00 0.00 0.00 4.24
798 892 2.044551 CCCTCCCCTGCTTTGAGC 60.045 66.667 0.00 0.00 42.82 4.26
889 983 3.314553 ACACACTTTCCTTACGACATCG 58.685 45.455 0.00 0.00 46.33 3.84
904 998 2.697761 ATCGTCCACACCCGACTCG 61.698 63.158 0.00 0.00 35.69 4.18
906 1000 2.567049 GTCCACACCCGACTCGAG 59.433 66.667 11.84 11.84 0.00 4.04
937 1032 2.043852 GAGACGCAGAGGGAGGGA 60.044 66.667 0.00 0.00 0.00 4.20
940 1035 2.043450 ACGCAGAGGGAGGGAGAG 60.043 66.667 0.00 0.00 0.00 3.20
946 1041 1.007238 CAGAGGGAGGGAGAGTGGTTA 59.993 57.143 0.00 0.00 0.00 2.85
964 1059 1.938585 TACTTACTGCCTGAGTGCCT 58.061 50.000 0.00 0.00 35.96 4.75
1100 1195 2.127345 GCATGCATGCGCTCGATC 60.127 61.111 33.99 8.38 44.67 3.69
1101 1196 2.170273 CATGCATGCGCTCGATCG 59.830 61.111 14.93 9.36 39.64 3.69
1102 1197 2.028043 ATGCATGCGCTCGATCGA 59.972 55.556 18.32 18.32 39.64 3.59
1103 1198 1.373873 ATGCATGCGCTCGATCGAT 60.374 52.632 19.78 0.00 39.64 3.59
1104 1199 1.349982 ATGCATGCGCTCGATCGATC 61.350 55.000 19.78 15.68 39.64 3.69
1105 1200 1.732326 GCATGCGCTCGATCGATCT 60.732 57.895 19.78 0.00 34.30 2.75
1108 1203 0.387878 ATGCGCTCGATCGATCTTCC 60.388 55.000 19.78 9.41 0.00 3.46
1121 1216 2.366916 CGATCTTCCTCCCTATTGTGCT 59.633 50.000 0.00 0.00 0.00 4.40
1122 1217 3.737850 GATCTTCCTCCCTATTGTGCTG 58.262 50.000 0.00 0.00 0.00 4.41
1123 1218 2.832838 TCTTCCTCCCTATTGTGCTGA 58.167 47.619 0.00 0.00 0.00 4.26
1128 1223 5.036117 TCCTCCCTATTGTGCTGAATTAC 57.964 43.478 0.00 0.00 0.00 1.89
1131 1226 2.032894 CCCTATTGTGCTGAATTACGCG 60.033 50.000 3.53 3.53 0.00 6.01
1152 1247 1.068434 ACTGATTGGTTTGGGTTTGCG 59.932 47.619 0.00 0.00 0.00 4.85
1191 1309 3.482110 GCGTGTCTCATGTTGTGTTTTTC 59.518 43.478 0.00 0.00 0.00 2.29
1197 1315 5.516339 GTCTCATGTTGTGTTTTTCCTGTTG 59.484 40.000 0.00 0.00 0.00 3.33
1198 1316 4.753233 TCATGTTGTGTTTTTCCTGTTGG 58.247 39.130 0.00 0.00 0.00 3.77
1199 1317 4.221703 TCATGTTGTGTTTTTCCTGTTGGT 59.778 37.500 0.00 0.00 34.23 3.67
1200 1318 4.608948 TGTTGTGTTTTTCCTGTTGGTT 57.391 36.364 0.00 0.00 34.23 3.67
1201 1319 4.962155 TGTTGTGTTTTTCCTGTTGGTTT 58.038 34.783 0.00 0.00 34.23 3.27
1202 1320 4.752101 TGTTGTGTTTTTCCTGTTGGTTTG 59.248 37.500 0.00 0.00 34.23 2.93
1203 1321 3.931578 TGTGTTTTTCCTGTTGGTTTGG 58.068 40.909 0.00 0.00 34.23 3.28
1219 1337 2.035783 GGGGTTTGCAGGAGGGAC 59.964 66.667 0.00 0.00 0.00 4.46
1654 1778 4.463879 CTCTGCGGCCACTCCCTG 62.464 72.222 2.24 0.00 0.00 4.45
2001 2140 1.001974 ACGCCAACTGCAACTGATCTA 59.998 47.619 0.00 0.00 41.33 1.98
2083 2222 2.987149 CGTGCGACTGTACTGAAAATCT 59.013 45.455 6.77 0.00 0.00 2.40
2132 2271 1.595382 GGCCATGATCCCGAACGAG 60.595 63.158 0.00 0.00 0.00 4.18
2140 2279 0.592148 ATCCCGAACGAGCGATCTAC 59.408 55.000 0.00 0.00 0.00 2.59
2176 2318 8.821894 CAGCTTGTACTAGTAGGATTCAATTTC 58.178 37.037 1.87 0.00 0.00 2.17
2195 2337 7.613022 TCAATTTCAAGGAGACAATAAGCATCT 59.387 33.333 0.00 0.00 0.00 2.90
2204 2346 0.395586 AATAAGCATCTTGCCCGGCA 60.396 50.000 8.43 8.43 46.52 5.69
2275 2417 7.558081 TGCTCTCTAGTCTGTACATGTTAATCT 59.442 37.037 2.30 0.00 0.00 2.40
2349 2495 1.347062 TTTCCATGGACTTTTGCCCC 58.653 50.000 15.91 0.00 0.00 5.80
2351 2497 0.189574 TCCATGGACTTTTGCCCCAA 59.810 50.000 11.44 0.00 33.15 4.12
2353 2499 1.629861 CCATGGACTTTTGCCCCAATT 59.370 47.619 5.56 0.00 33.15 2.32
2354 2500 2.355007 CCATGGACTTTTGCCCCAATTC 60.355 50.000 5.56 0.00 33.15 2.17
2438 2593 2.159382 TGTCTCCTTTTTGGCGAATCC 58.841 47.619 0.00 0.00 30.41 3.01
2475 2630 1.482182 TCCACCATCATCAGGAACTCG 59.518 52.381 0.00 0.00 34.60 4.18
2486 2641 1.226239 GGAACTCGTCGACCGCTAC 60.226 63.158 10.58 0.00 36.19 3.58
2492 2647 0.247814 TCGTCGACCGCTACGATTTC 60.248 55.000 10.58 0.00 42.74 2.17
2534 2689 3.304057 CGGCACCAAGAAGAAGAAAGTTC 60.304 47.826 0.00 0.00 0.00 3.01
2546 2701 9.213799 AGAAGAAGAAAGTTCATCTAATCACAC 57.786 33.333 0.00 0.00 34.48 3.82
2548 2703 6.591834 AGAAGAAAGTTCATCTAATCACACGG 59.408 38.462 0.00 0.00 33.88 4.94
2549 2704 6.037786 AGAAAGTTCATCTAATCACACGGA 57.962 37.500 0.00 0.00 0.00 4.69
2550 2705 6.464222 AGAAAGTTCATCTAATCACACGGAA 58.536 36.000 0.00 0.00 0.00 4.30
2551 2706 6.934645 AGAAAGTTCATCTAATCACACGGAAA 59.065 34.615 0.00 0.00 0.00 3.13
2552 2707 6.727824 AAGTTCATCTAATCACACGGAAAG 57.272 37.500 0.00 0.00 0.00 2.62
2553 2708 6.037786 AGTTCATCTAATCACACGGAAAGA 57.962 37.500 0.00 0.00 0.00 2.52
2555 2710 5.914898 TCATCTAATCACACGGAAAGAGA 57.085 39.130 0.00 0.00 0.00 3.10
2565 2727 2.682856 CACGGAAAGAGAGAGAGAGAGG 59.317 54.545 0.00 0.00 0.00 3.69
2566 2728 2.574369 ACGGAAAGAGAGAGAGAGAGGA 59.426 50.000 0.00 0.00 0.00 3.71
2599 2767 3.243737 ACGACAAAAATGAAAGGAAGGCC 60.244 43.478 0.00 0.00 0.00 5.19
2601 2769 4.309933 GACAAAAATGAAAGGAAGGCCAG 58.690 43.478 5.01 0.00 36.29 4.85
2702 2875 1.282570 CATGACCGCACGCAACTTT 59.717 52.632 0.00 0.00 0.00 2.66
2703 2876 0.725784 CATGACCGCACGCAACTTTC 60.726 55.000 0.00 0.00 0.00 2.62
2704 2877 2.127758 GACCGCACGCAACTTTCG 60.128 61.111 0.00 0.00 0.00 3.46
2705 2878 4.307908 ACCGCACGCAACTTTCGC 62.308 61.111 0.00 0.00 0.00 4.70
2762 2946 1.731700 GCATCATGCATTGTCGCCT 59.268 52.632 4.20 0.00 44.26 5.52
2782 2967 1.067425 TGCCTGTATCGTTGTAGCGTT 60.067 47.619 0.00 0.00 0.00 4.84
2795 2980 1.135344 GTAGCGTTGGGAGAGACAGAC 60.135 57.143 0.00 0.00 0.00 3.51
2796 2981 0.827925 AGCGTTGGGAGAGACAGACA 60.828 55.000 0.00 0.00 0.00 3.41
2797 2982 0.389166 GCGTTGGGAGAGACAGACAG 60.389 60.000 0.00 0.00 0.00 3.51
2798 2983 0.244994 CGTTGGGAGAGACAGACAGG 59.755 60.000 0.00 0.00 0.00 4.00
2799 2984 0.610687 GTTGGGAGAGACAGACAGGG 59.389 60.000 0.00 0.00 0.00 4.45
2800 2985 1.194781 TTGGGAGAGACAGACAGGGC 61.195 60.000 0.00 0.00 0.00 5.19
2852 3037 8.951969 CGAAATGAGAGAAAGAAAAGAAACAAG 58.048 33.333 0.00 0.00 0.00 3.16
2866 3051 6.841443 AAGAAACAAGATATCTGATCTGCG 57.159 37.500 5.86 0.00 0.00 5.18
2907 3092 1.203523 GACAGCTCGAGGAACTGATGT 59.796 52.381 20.93 7.96 41.55 3.06
2910 3095 3.258372 ACAGCTCGAGGAACTGATGTAAA 59.742 43.478 20.93 0.00 41.55 2.01
2915 3100 5.163642 GCTCGAGGAACTGATGTAAACTCTA 60.164 44.000 15.58 0.00 41.55 2.43
2916 3101 6.460399 GCTCGAGGAACTGATGTAAACTCTAT 60.460 42.308 15.58 0.00 41.55 1.98
2937 3125 1.834458 AAAAACGTCGTAGCCGGCAC 61.834 55.000 31.54 22.55 39.06 5.01
2941 3129 3.450115 GTCGTAGCCGGCACCTCT 61.450 66.667 31.54 10.27 38.92 3.69
2942 3130 3.449227 TCGTAGCCGGCACCTCTG 61.449 66.667 31.54 11.97 33.95 3.35
2944 3132 2.978824 GTAGCCGGCACCTCTGAA 59.021 61.111 31.54 0.00 0.00 3.02
2945 3133 1.295423 GTAGCCGGCACCTCTGAAA 59.705 57.895 31.54 0.00 0.00 2.69
2946 3134 0.321298 GTAGCCGGCACCTCTGAAAA 60.321 55.000 31.54 0.00 0.00 2.29
2947 3135 0.398696 TAGCCGGCACCTCTGAAAAA 59.601 50.000 31.54 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.750850 GATTACTACTGCTGCCGGGA 59.249 55.000 2.18 0.00 0.00 5.14
1 2 0.464036 TGATTACTACTGCTGCCGGG 59.536 55.000 2.18 0.00 0.00 5.73
2 3 2.159099 TCTTGATTACTACTGCTGCCGG 60.159 50.000 0.00 0.00 0.00 6.13
3 4 3.165058 TCTTGATTACTACTGCTGCCG 57.835 47.619 0.00 0.00 0.00 5.69
5 6 5.120208 TCGTTTTCTTGATTACTACTGCTGC 59.880 40.000 0.00 0.00 0.00 5.25
6 7 6.706055 TCGTTTTCTTGATTACTACTGCTG 57.294 37.500 0.00 0.00 0.00 4.41
7 8 6.128902 CGTTCGTTTTCTTGATTACTACTGCT 60.129 38.462 0.00 0.00 0.00 4.24
8 9 6.007677 CGTTCGTTTTCTTGATTACTACTGC 58.992 40.000 0.00 0.00 0.00 4.40
9 10 6.007677 GCGTTCGTTTTCTTGATTACTACTG 58.992 40.000 0.00 0.00 0.00 2.74
10 11 5.119743 GGCGTTCGTTTTCTTGATTACTACT 59.880 40.000 0.00 0.00 0.00 2.57
11 12 5.311271 GGCGTTCGTTTTCTTGATTACTAC 58.689 41.667 0.00 0.00 0.00 2.73
12 13 4.389687 GGGCGTTCGTTTTCTTGATTACTA 59.610 41.667 0.00 0.00 0.00 1.82
13 14 3.187842 GGGCGTTCGTTTTCTTGATTACT 59.812 43.478 0.00 0.00 0.00 2.24
14 15 3.187842 AGGGCGTTCGTTTTCTTGATTAC 59.812 43.478 0.00 0.00 0.00 1.89
15 16 3.187637 CAGGGCGTTCGTTTTCTTGATTA 59.812 43.478 0.00 0.00 0.00 1.75
16 17 2.031157 CAGGGCGTTCGTTTTCTTGATT 60.031 45.455 0.00 0.00 0.00 2.57
17 18 1.535462 CAGGGCGTTCGTTTTCTTGAT 59.465 47.619 0.00 0.00 0.00 2.57
18 19 0.941542 CAGGGCGTTCGTTTTCTTGA 59.058 50.000 0.00 0.00 0.00 3.02
19 20 0.040425 CCAGGGCGTTCGTTTTCTTG 60.040 55.000 0.00 0.00 0.00 3.02
20 21 1.170290 CCCAGGGCGTTCGTTTTCTT 61.170 55.000 0.00 0.00 0.00 2.52
21 22 1.599797 CCCAGGGCGTTCGTTTTCT 60.600 57.895 0.00 0.00 0.00 2.52
22 23 1.895231 ACCCAGGGCGTTCGTTTTC 60.895 57.895 4.91 0.00 0.00 2.29
23 24 2.190841 CACCCAGGGCGTTCGTTTT 61.191 57.895 4.91 0.00 0.00 2.43
24 25 2.593436 CACCCAGGGCGTTCGTTT 60.593 61.111 4.91 0.00 0.00 3.60
25 26 3.868985 ACACCCAGGGCGTTCGTT 61.869 61.111 4.91 0.00 0.00 3.85
26 27 4.619227 CACACCCAGGGCGTTCGT 62.619 66.667 4.91 0.00 0.00 3.85
27 28 3.818121 TTCACACCCAGGGCGTTCG 62.818 63.158 4.91 0.00 0.00 3.95
28 29 1.966451 CTTCACACCCAGGGCGTTC 60.966 63.158 4.91 0.00 0.00 3.95
29 30 2.113139 CTTCACACCCAGGGCGTT 59.887 61.111 4.91 0.00 0.00 4.84
30 31 3.168528 ACTTCACACCCAGGGCGT 61.169 61.111 4.91 0.00 0.00 5.68
31 32 2.669569 CACTTCACACCCAGGGCG 60.670 66.667 4.91 0.00 0.00 6.13
32 33 1.898574 CACACTTCACACCCAGGGC 60.899 63.158 4.91 0.00 0.00 5.19
33 34 0.182537 TTCACACTTCACACCCAGGG 59.817 55.000 2.85 2.85 0.00 4.45
34 35 1.308998 GTTCACACTTCACACCCAGG 58.691 55.000 0.00 0.00 0.00 4.45
35 36 0.937304 CGTTCACACTTCACACCCAG 59.063 55.000 0.00 0.00 0.00 4.45
36 37 0.537653 TCGTTCACACTTCACACCCA 59.462 50.000 0.00 0.00 0.00 4.51
37 38 1.597663 CTTCGTTCACACTTCACACCC 59.402 52.381 0.00 0.00 0.00 4.61
38 39 1.003866 GCTTCGTTCACACTTCACACC 60.004 52.381 0.00 0.00 0.00 4.16
39 40 1.663643 TGCTTCGTTCACACTTCACAC 59.336 47.619 0.00 0.00 0.00 3.82
40 41 1.933181 CTGCTTCGTTCACACTTCACA 59.067 47.619 0.00 0.00 0.00 3.58
41 42 2.033662 GTCTGCTTCGTTCACACTTCAC 60.034 50.000 0.00 0.00 0.00 3.18
42 43 2.201732 GTCTGCTTCGTTCACACTTCA 58.798 47.619 0.00 0.00 0.00 3.02
43 44 2.033662 GTGTCTGCTTCGTTCACACTTC 60.034 50.000 0.00 0.00 35.50 3.01
44 45 1.933853 GTGTCTGCTTCGTTCACACTT 59.066 47.619 0.00 0.00 35.50 3.16
45 46 1.571919 GTGTCTGCTTCGTTCACACT 58.428 50.000 0.00 0.00 35.50 3.55
59 60 4.702081 GTCGTGCTCCGCGTGTCT 62.702 66.667 4.92 0.00 38.57 3.41
116 123 2.032636 ACGTTTTGTTACGCTAACCAGC 60.033 45.455 0.00 0.00 45.06 4.85
152 159 2.004017 TGATTACGCGCCTTGGTTAAG 58.996 47.619 5.73 0.00 0.00 1.85
153 160 2.096220 TGATTACGCGCCTTGGTTAA 57.904 45.000 5.73 0.00 0.00 2.01
160 169 1.743995 GGTGGTTGATTACGCGCCT 60.744 57.895 5.73 0.00 0.00 5.52
166 175 1.641123 CGCCGGTGGTGGTTGATTAC 61.641 60.000 7.26 0.00 0.00 1.89
185 194 4.432741 GTCAGGGGGAAGGCTGGC 62.433 72.222 0.00 0.00 0.00 4.85
291 301 1.000163 CTCCGTGAGCTGTACTTGTGT 60.000 52.381 0.00 0.00 0.00 3.72
356 395 4.517934 CTCCTCCCTACCCGCGGA 62.518 72.222 30.73 6.52 0.00 5.54
361 400 3.469978 ATCGCCCTCCTCCCTACCC 62.470 68.421 0.00 0.00 0.00 3.69
362 401 2.201771 ATCGCCCTCCTCCCTACC 59.798 66.667 0.00 0.00 0.00 3.18
364 403 2.524394 GCATCGCCCTCCTCCCTA 60.524 66.667 0.00 0.00 0.00 3.53
370 409 2.596631 ATGCATGCATCGCCCTCC 60.597 61.111 27.46 0.00 29.42 4.30
474 526 1.905354 AGGCTGTGAAAGGGCAAGC 60.905 57.895 0.00 0.00 0.00 4.01
476 528 1.531365 CCAGGCTGTGAAAGGGCAA 60.531 57.895 14.43 0.00 0.00 4.52
559 630 1.152963 AATCGGAATTGGGGGCGAG 60.153 57.895 0.00 0.00 0.00 5.03
608 682 1.882989 GCTCTAGGGGATAGCCAGCG 61.883 65.000 0.00 0.00 35.15 5.18
624 698 5.854431 AAGAGAACAAAGAAAGATCGCTC 57.146 39.130 0.00 0.00 0.00 5.03
635 715 4.083057 GGGAGCTTAGCAAAGAGAACAAAG 60.083 45.833 7.07 0.00 34.37 2.77
636 716 3.821033 GGGAGCTTAGCAAAGAGAACAAA 59.179 43.478 7.07 0.00 34.37 2.83
637 717 3.073062 AGGGAGCTTAGCAAAGAGAACAA 59.927 43.478 7.07 0.00 34.37 2.83
655 744 3.955524 TTAATGGCGGGAATAAAGGGA 57.044 42.857 0.00 0.00 0.00 4.20
724 816 0.698818 GGCAGGAAGGAAGGAAGGAA 59.301 55.000 0.00 0.00 0.00 3.36
725 817 1.208165 GGGCAGGAAGGAAGGAAGGA 61.208 60.000 0.00 0.00 0.00 3.36
726 818 1.304617 GGGCAGGAAGGAAGGAAGG 59.695 63.158 0.00 0.00 0.00 3.46
727 819 1.078143 CGGGCAGGAAGGAAGGAAG 60.078 63.158 0.00 0.00 0.00 3.46
728 820 0.545787 TACGGGCAGGAAGGAAGGAA 60.546 55.000 0.00 0.00 0.00 3.36
729 821 1.079621 TACGGGCAGGAAGGAAGGA 59.920 57.895 0.00 0.00 0.00 3.36
730 822 1.221021 GTACGGGCAGGAAGGAAGG 59.779 63.158 0.00 0.00 0.00 3.46
731 823 0.391263 GTGTACGGGCAGGAAGGAAG 60.391 60.000 0.00 0.00 0.00 3.46
732 824 1.675219 GTGTACGGGCAGGAAGGAA 59.325 57.895 0.00 0.00 0.00 3.36
733 825 2.288025 GGTGTACGGGCAGGAAGGA 61.288 63.158 0.00 0.00 0.00 3.36
755 849 3.742248 GAGGGAGGGAGGGACGGAG 62.742 73.684 0.00 0.00 0.00 4.63
772 866 4.761304 AGGGGAGGGAGGGAGGGA 62.761 72.222 0.00 0.00 0.00 4.20
773 867 4.505970 CAGGGGAGGGAGGGAGGG 62.506 77.778 0.00 0.00 0.00 4.30
776 870 3.208342 AAAGCAGGGGAGGGAGGGA 62.208 63.158 0.00 0.00 0.00 4.20
777 871 2.615288 AAAGCAGGGGAGGGAGGG 60.615 66.667 0.00 0.00 0.00 4.30
778 872 1.919600 CTCAAAGCAGGGGAGGGAGG 61.920 65.000 0.00 0.00 0.00 4.30
779 873 1.606531 CTCAAAGCAGGGGAGGGAG 59.393 63.158 0.00 0.00 0.00 4.30
780 874 2.606587 GCTCAAAGCAGGGGAGGGA 61.607 63.158 0.00 0.00 41.89 4.20
781 875 2.044551 GCTCAAAGCAGGGGAGGG 60.045 66.667 0.00 0.00 41.89 4.30
782 876 2.437359 CGCTCAAAGCAGGGGAGG 60.437 66.667 0.00 0.00 42.58 4.30
783 877 0.606401 TTTCGCTCAAAGCAGGGGAG 60.606 55.000 0.00 0.00 42.58 4.30
784 878 0.606401 CTTTCGCTCAAAGCAGGGGA 60.606 55.000 0.00 0.00 42.58 4.81
785 879 0.606401 TCTTTCGCTCAAAGCAGGGG 60.606 55.000 0.00 0.00 42.58 4.79
786 880 1.399791 GATCTTTCGCTCAAAGCAGGG 59.600 52.381 0.00 0.00 42.58 4.45
787 881 1.399791 GGATCTTTCGCTCAAAGCAGG 59.600 52.381 0.00 0.00 42.58 4.85
792 886 1.271325 TGGCAGGATCTTTCGCTCAAA 60.271 47.619 0.00 0.00 0.00 2.69
798 892 1.094073 CAGCCTGGCAGGATCTTTCG 61.094 60.000 37.07 14.86 37.67 3.46
889 983 2.567049 CTCGAGTCGGGTGTGGAC 59.433 66.667 13.54 0.00 34.62 4.02
897 991 3.184683 GCTGCTTGCTCGAGTCGG 61.185 66.667 15.13 4.64 38.95 4.79
904 998 1.069364 GTCTCTGTTTGCTGCTTGCTC 60.069 52.381 0.00 0.00 43.37 4.26
906 1000 0.385223 CGTCTCTGTTTGCTGCTTGC 60.385 55.000 0.00 0.00 43.25 4.01
918 1013 2.422231 CCCTCCCTCTGCGTCTCTG 61.422 68.421 0.00 0.00 0.00 3.35
919 1014 2.043450 CCCTCCCTCTGCGTCTCT 60.043 66.667 0.00 0.00 0.00 3.10
937 1032 3.507411 TCAGGCAGTAAGTAACCACTCT 58.493 45.455 0.00 0.00 32.29 3.24
940 1035 3.326747 CACTCAGGCAGTAAGTAACCAC 58.673 50.000 0.00 0.00 32.21 4.16
983 1078 0.304098 CATGCGCTAGAAGCTGAAGC 59.696 55.000 9.73 5.37 39.60 3.86
1016 1111 2.972505 AGGGCAAGTTGTCACGCG 60.973 61.111 10.13 3.53 0.00 6.01
1085 1180 1.349982 GATCGATCGAGCGCATGCAT 61.350 55.000 23.84 5.99 46.23 3.96
1086 1181 2.018324 GATCGATCGAGCGCATGCA 61.018 57.895 23.84 0.00 46.23 3.96
1087 1182 1.280886 AAGATCGATCGAGCGCATGC 61.281 55.000 25.86 7.91 43.24 4.06
1088 1183 0.707276 GAAGATCGATCGAGCGCATG 59.293 55.000 25.86 0.07 35.44 4.06
1089 1184 0.387878 GGAAGATCGATCGAGCGCAT 60.388 55.000 25.86 16.89 35.44 4.73
1090 1185 1.008424 GGAAGATCGATCGAGCGCA 60.008 57.895 25.86 7.98 35.44 6.09
1091 1186 0.727793 GAGGAAGATCGATCGAGCGC 60.728 60.000 25.86 21.05 35.44 5.92
1092 1187 0.109964 GGAGGAAGATCGATCGAGCG 60.110 60.000 25.86 18.51 35.44 5.03
1093 1188 0.242555 GGGAGGAAGATCGATCGAGC 59.757 60.000 25.10 25.10 0.00 5.03
1094 1189 1.904287 AGGGAGGAAGATCGATCGAG 58.096 55.000 23.84 0.00 0.00 4.04
1095 1190 3.722908 ATAGGGAGGAAGATCGATCGA 57.277 47.619 21.86 21.86 0.00 3.59
1096 1191 3.508012 ACAATAGGGAGGAAGATCGATCG 59.492 47.826 19.33 9.36 0.00 3.69
1097 1192 4.815269 CACAATAGGGAGGAAGATCGATC 58.185 47.826 17.91 17.91 0.00 3.69
1098 1193 3.007398 GCACAATAGGGAGGAAGATCGAT 59.993 47.826 0.00 0.00 0.00 3.59
1099 1194 2.365617 GCACAATAGGGAGGAAGATCGA 59.634 50.000 0.00 0.00 0.00 3.59
1100 1195 2.366916 AGCACAATAGGGAGGAAGATCG 59.633 50.000 0.00 0.00 0.00 3.69
1101 1196 3.389329 TCAGCACAATAGGGAGGAAGATC 59.611 47.826 0.00 0.00 0.00 2.75
1102 1197 3.387962 TCAGCACAATAGGGAGGAAGAT 58.612 45.455 0.00 0.00 0.00 2.40
1103 1198 2.832838 TCAGCACAATAGGGAGGAAGA 58.167 47.619 0.00 0.00 0.00 2.87
1104 1199 3.634397 TTCAGCACAATAGGGAGGAAG 57.366 47.619 0.00 0.00 0.00 3.46
1105 1200 4.591321 AATTCAGCACAATAGGGAGGAA 57.409 40.909 0.00 0.00 0.00 3.36
1108 1203 3.248602 GCGTAATTCAGCACAATAGGGAG 59.751 47.826 0.78 0.00 0.00 4.30
1121 1216 2.967362 ACCAATCAGTCGCGTAATTCA 58.033 42.857 5.77 0.00 0.00 2.57
1122 1217 4.088648 CAAACCAATCAGTCGCGTAATTC 58.911 43.478 5.77 0.00 0.00 2.17
1123 1218 3.119990 CCAAACCAATCAGTCGCGTAATT 60.120 43.478 5.77 0.00 0.00 1.40
1128 1223 1.234615 ACCCAAACCAATCAGTCGCG 61.235 55.000 0.00 0.00 0.00 5.87
1131 1226 2.754472 GCAAACCCAAACCAATCAGTC 58.246 47.619 0.00 0.00 0.00 3.51
1152 1247 1.443828 GCATTCCTCGACCTCCCTC 59.556 63.158 0.00 0.00 0.00 4.30
1191 1309 0.179059 GCAAACCCCAAACCAACAGG 60.179 55.000 0.00 0.00 0.00 4.00
1197 1315 1.471829 CCTCCTGCAAACCCCAAACC 61.472 60.000 0.00 0.00 0.00 3.27
1198 1316 1.471829 CCCTCCTGCAAACCCCAAAC 61.472 60.000 0.00 0.00 0.00 2.93
1199 1317 1.152355 CCCTCCTGCAAACCCCAAA 60.152 57.895 0.00 0.00 0.00 3.28
1200 1318 2.088096 TCCCTCCTGCAAACCCCAA 61.088 57.895 0.00 0.00 0.00 4.12
1201 1319 2.451493 TCCCTCCTGCAAACCCCA 60.451 61.111 0.00 0.00 0.00 4.96
1202 1320 2.035783 GTCCCTCCTGCAAACCCC 59.964 66.667 0.00 0.00 0.00 4.95
1203 1321 2.359975 CGTCCCTCCTGCAAACCC 60.360 66.667 0.00 0.00 0.00 4.11
1219 1337 1.681793 ACCATCCTCCTGTAATCGTCG 59.318 52.381 0.00 0.00 0.00 5.12
1597 1721 2.187946 CTGTCGATGGTGGCCCTC 59.812 66.667 0.00 0.00 0.00 4.30
1621 1745 1.733399 GAGGCACACGTTCTCGGAC 60.733 63.158 0.00 0.00 41.85 4.79
1672 1796 4.479993 AGCATCCTGCCGACCTGC 62.480 66.667 0.00 0.00 46.52 4.85
1725 1861 4.099170 GGTTCTGCTGCTGCTGCG 62.099 66.667 23.38 18.17 43.34 5.18
1936 2072 4.803426 CTCCTGCCGTCGCTGTCC 62.803 72.222 0.00 0.00 35.36 4.02
2001 2140 1.371183 CGTCAGTCATGGGTGTGGT 59.629 57.895 0.00 0.00 0.00 4.16
2099 2238 0.683412 TGGCCTCCATGATCGAGATG 59.317 55.000 3.32 0.00 0.00 2.90
2132 2271 4.258543 AGCTGGTAGATAGAGTAGATCGC 58.741 47.826 0.00 0.00 0.00 4.58
2140 2279 7.604927 CCTACTAGTACAAGCTGGTAGATAGAG 59.395 44.444 20.25 14.43 46.71 2.43
2176 2318 4.201990 GGCAAGATGCTTATTGTCTCCTTG 60.202 45.833 8.53 0.00 44.28 3.61
2195 2337 4.776322 CATCCTCGTGCCGGGCAA 62.776 66.667 25.70 8.24 41.47 4.52
2204 2346 1.141881 CTAAGCCGTGCATCCTCGT 59.858 57.895 0.00 0.00 0.00 4.18
2207 2349 0.753262 CTACCTAAGCCGTGCATCCT 59.247 55.000 0.00 0.00 0.00 3.24
2275 2417 6.713762 ATTCACAATTGACAGTGGAAAAGA 57.286 33.333 13.59 0.00 36.43 2.52
2318 2460 7.781548 AAGTCCATGGAAAATACGTACATAC 57.218 36.000 18.20 0.00 0.00 2.39
2325 2471 4.173256 GGCAAAAGTCCATGGAAAATACG 58.827 43.478 18.20 4.99 0.00 3.06
2349 2495 1.750778 GGTGTATGCACAGGGGAATTG 59.249 52.381 16.11 0.00 46.95 2.32
2351 2497 0.258774 GGGTGTATGCACAGGGGAAT 59.741 55.000 16.11 0.00 46.95 3.01
2353 2499 0.918799 ATGGGTGTATGCACAGGGGA 60.919 55.000 16.11 0.00 46.95 4.81
2354 2500 0.466189 GATGGGTGTATGCACAGGGG 60.466 60.000 16.11 0.00 46.95 4.79
2397 2547 5.064558 ACAGAATGAGATACGATACGACCT 58.935 41.667 0.00 0.00 39.69 3.85
2475 2630 1.189403 CAGAAATCGTAGCGGTCGAC 58.811 55.000 7.13 7.13 40.07 4.20
2534 2689 5.895928 TCTCTCTTTCCGTGTGATTAGATG 58.104 41.667 0.00 0.00 0.00 2.90
2546 2701 3.118408 TCTCCTCTCTCTCTCTCTTTCCG 60.118 52.174 0.00 0.00 0.00 4.30
2548 2703 5.710099 TGTTTCTCCTCTCTCTCTCTCTTTC 59.290 44.000 0.00 0.00 0.00 2.62
2549 2704 5.640147 TGTTTCTCCTCTCTCTCTCTCTTT 58.360 41.667 0.00 0.00 0.00 2.52
2550 2705 5.255397 TGTTTCTCCTCTCTCTCTCTCTT 57.745 43.478 0.00 0.00 0.00 2.85
2551 2706 4.927267 TGTTTCTCCTCTCTCTCTCTCT 57.073 45.455 0.00 0.00 0.00 3.10
2552 2707 5.242838 TGTTTGTTTCTCCTCTCTCTCTCTC 59.757 44.000 0.00 0.00 0.00 3.20
2553 2708 5.144100 TGTTTGTTTCTCCTCTCTCTCTCT 58.856 41.667 0.00 0.00 0.00 3.10
2555 2710 5.606505 GTTGTTTGTTTCTCCTCTCTCTCT 58.393 41.667 0.00 0.00 0.00 3.10
2565 2727 7.271936 TCATTTTTGTCGTTGTTTGTTTCTC 57.728 32.000 0.00 0.00 0.00 2.87
2566 2728 7.644986 TTCATTTTTGTCGTTGTTTGTTTCT 57.355 28.000 0.00 0.00 0.00 2.52
2599 2767 1.021202 TCGTTGGGTGTGAAAAGCTG 58.979 50.000 0.00 0.00 0.00 4.24
2601 2769 1.399727 CGATCGTTGGGTGTGAAAAGC 60.400 52.381 7.03 0.00 0.00 3.51
2702 2875 2.250939 CCTGCACTTTTCACCGCGA 61.251 57.895 8.23 0.00 0.00 5.87
2703 2876 2.058829 AACCTGCACTTTTCACCGCG 62.059 55.000 0.00 0.00 0.00 6.46
2704 2877 0.594796 CAACCTGCACTTTTCACCGC 60.595 55.000 0.00 0.00 0.00 5.68
2705 2878 0.030638 CCAACCTGCACTTTTCACCG 59.969 55.000 0.00 0.00 0.00 4.94
2706 2879 0.389025 CCCAACCTGCACTTTTCACC 59.611 55.000 0.00 0.00 0.00 4.02
2707 2880 1.111277 ACCCAACCTGCACTTTTCAC 58.889 50.000 0.00 0.00 0.00 3.18
2708 2881 1.110442 CACCCAACCTGCACTTTTCA 58.890 50.000 0.00 0.00 0.00 2.69
2710 2883 0.823460 CACACCCAACCTGCACTTTT 59.177 50.000 0.00 0.00 0.00 2.27
2762 2946 0.528924 ACGCTACAACGATACAGGCA 59.471 50.000 0.00 0.00 36.70 4.75
2782 2967 1.610673 GCCCTGTCTGTCTCTCCCA 60.611 63.158 0.00 0.00 0.00 4.37
2798 2983 1.964373 TGAAAGAAACGGGAGCGCC 60.964 57.895 2.29 0.00 0.00 6.53
2799 2984 1.206831 GTGAAAGAAACGGGAGCGC 59.793 57.895 0.00 0.00 0.00 5.92
2800 2985 1.194772 GAAGTGAAAGAAACGGGAGCG 59.805 52.381 0.00 0.00 0.00 5.03
2852 3037 1.336332 ACGCACCGCAGATCAGATATC 60.336 52.381 0.00 0.00 0.00 1.63
2861 3046 2.324330 CCAAATCACGCACCGCAGA 61.324 57.895 0.00 0.00 0.00 4.26
2866 3051 1.875963 CCACTCCAAATCACGCACC 59.124 57.895 0.00 0.00 0.00 5.01
2907 3092 6.308766 GGCTACGACGTTTTTCATAGAGTTTA 59.691 38.462 5.50 0.00 0.00 2.01
2910 3095 4.171754 GGCTACGACGTTTTTCATAGAGT 58.828 43.478 5.50 0.00 0.00 3.24
2915 3100 1.073177 CCGGCTACGACGTTTTTCAT 58.927 50.000 5.50 0.00 44.60 2.57
2916 3101 1.559149 GCCGGCTACGACGTTTTTCA 61.559 55.000 22.15 0.00 44.60 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.