Multiple sequence alignment - TraesCS2B01G213500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G213500 chr2B 100.000 5158 0 0 1 5158 197988008 197993165 0.000000e+00 9526.0
1 TraesCS2B01G213500 chr2B 96.208 1846 45 10 1494 3327 198069954 198071786 0.000000e+00 2998.0
2 TraesCS2B01G213500 chr2B 98.621 725 10 0 3469 4193 198072284 198073008 0.000000e+00 1284.0
3 TraesCS2B01G213500 chr2B 91.477 528 22 5 798 1324 198069450 198069955 0.000000e+00 704.0
4 TraesCS2B01G213500 chr2B 95.890 146 6 0 3325 3470 198071981 198072126 2.400000e-58 237.0
5 TraesCS2B01G213500 chr2A 95.146 2575 70 21 797 3327 161642767 161640204 0.000000e+00 4012.0
6 TraesCS2B01G213500 chr2A 98.082 834 16 0 3325 4158 161640007 161639174 0.000000e+00 1452.0
7 TraesCS2B01G213500 chr2A 91.000 700 50 11 101 793 161644888 161644195 0.000000e+00 931.0
8 TraesCS2B01G213500 chr2A 86.232 552 73 3 3597 4147 40550422 40550971 3.440000e-166 595.0
9 TraesCS2B01G213500 chr2A 79.615 260 22 11 705 944 161646513 161646265 1.920000e-34 158.0
10 TraesCS2B01G213500 chr6B 92.759 870 34 8 4314 5158 666090813 666089948 0.000000e+00 1230.0
11 TraesCS2B01G213500 chr6A 87.719 855 68 19 4314 5158 457094699 457093872 0.000000e+00 963.0
12 TraesCS2B01G213500 chr6D 87.294 669 47 23 4314 4978 319289455 319288821 0.000000e+00 730.0
13 TraesCS2B01G213500 chr6D 82.515 652 83 21 14 657 437660203 437660831 1.260000e-150 544.0
14 TraesCS2B01G213500 chr7B 92.525 495 28 6 4599 5093 122623771 122624256 0.000000e+00 701.0
15 TraesCS2B01G213500 chr7B 82.032 679 74 18 13 660 592352463 592353124 7.600000e-148 534.0
16 TraesCS2B01G213500 chr7B 90.704 355 20 6 4314 4667 122623458 122623800 1.310000e-125 460.0
17 TraesCS2B01G213500 chr7B 81.514 568 78 16 98 660 650643198 650643743 4.740000e-120 442.0
18 TraesCS2B01G213500 chr7B 86.175 217 27 3 4309 4523 700382761 700382976 1.120000e-56 231.0
19 TraesCS2B01G213500 chr2D 88.206 602 47 16 4564 5158 74518351 74518935 0.000000e+00 697.0
20 TraesCS2B01G213500 chr2D 87.354 601 54 14 4564 5158 9184565 9185149 0.000000e+00 669.0
21 TraesCS2B01G213500 chr2D 87.354 601 53 15 4564 5158 31398318 31397735 0.000000e+00 667.0
22 TraesCS2B01G213500 chr2D 80.788 203 14 8 710 900 139362188 139362377 9.010000e-28 135.0
23 TraesCS2B01G213500 chr4A 87.854 601 50 15 4564 5158 154317690 154318273 0.000000e+00 684.0
24 TraesCS2B01G213500 chr4A 84.848 264 37 3 4309 4570 666808427 666808689 3.960000e-66 263.0
25 TraesCS2B01G213500 chr4A 87.766 188 11 7 1309 1495 137966968 137967144 5.230000e-50 209.0
26 TraesCS2B01G213500 chr4A 87.766 188 11 7 1309 1495 137972841 137972665 5.230000e-50 209.0
27 TraesCS2B01G213500 chr3B 87.793 598 47 14 4564 5155 719422656 719423233 0.000000e+00 676.0
28 TraesCS2B01G213500 chr3B 85.328 259 35 3 4314 4570 610313805 610313548 1.100000e-66 265.0
29 TraesCS2B01G213500 chr3B 97.059 34 1 0 4255 4288 819313875 819313908 2.010000e-04 58.4
30 TraesCS2B01G213500 chr1D 83.931 641 66 20 14 622 480816901 480817536 3.460000e-161 579.0
31 TraesCS2B01G213500 chr1D 83.827 439 55 13 98 527 269988350 269988781 2.240000e-108 403.0
32 TraesCS2B01G213500 chr1D 87.719 171 17 3 1322 1492 423040571 423040737 4.070000e-46 196.0
33 TraesCS2B01G213500 chr1B 92.800 375 15 5 4784 5158 484886854 484886492 2.730000e-147 532.0
34 TraesCS2B01G213500 chr1B 80.791 708 86 29 13 712 150207923 150208588 4.610000e-140 508.0
35 TraesCS2B01G213500 chr7D 84.530 543 69 14 125 657 524874324 524874861 1.650000e-144 523.0
36 TraesCS2B01G213500 chr7D 88.304 171 16 3 1323 1492 525767962 525768129 8.760000e-48 202.0
37 TraesCS2B01G213500 chr7D 87.293 181 15 3 1312 1492 454079419 454079247 3.150000e-47 200.0
38 TraesCS2B01G213500 chr4B 82.923 568 66 20 102 660 85640359 85640904 2.790000e-132 483.0
39 TraesCS2B01G213500 chr3D 85.769 260 31 6 4314 4570 118514164 118513908 2.370000e-68 270.0
40 TraesCS2B01G213500 chr3D 84.513 226 31 4 4346 4570 118273128 118272906 2.420000e-53 220.0
41 TraesCS2B01G213500 chr5B 85.441 261 35 3 4312 4570 436563818 436563559 8.510000e-68 268.0
42 TraesCS2B01G213500 chr5D 93.333 150 8 2 1348 1497 529218184 529218331 2.420000e-53 220.0
43 TraesCS2B01G213500 chr4D 88.333 180 13 3 1313 1492 34661517 34661688 5.230000e-50 209.0
44 TraesCS2B01G213500 chr5A 88.439 173 12 3 1320 1492 605231140 605231304 8.760000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G213500 chr2B 197988008 197993165 5157 False 9526.00 9526 100.00000 1 5158 1 chr2B.!!$F1 5157
1 TraesCS2B01G213500 chr2B 198069450 198073008 3558 False 1305.75 2998 95.54900 798 4193 4 chr2B.!!$F2 3395
2 TraesCS2B01G213500 chr2A 161639174 161646513 7339 True 1638.25 4012 90.96075 101 4158 4 chr2A.!!$R1 4057
3 TraesCS2B01G213500 chr2A 40550422 40550971 549 False 595.00 595 86.23200 3597 4147 1 chr2A.!!$F1 550
4 TraesCS2B01G213500 chr6B 666089948 666090813 865 True 1230.00 1230 92.75900 4314 5158 1 chr6B.!!$R1 844
5 TraesCS2B01G213500 chr6A 457093872 457094699 827 True 963.00 963 87.71900 4314 5158 1 chr6A.!!$R1 844
6 TraesCS2B01G213500 chr6D 319288821 319289455 634 True 730.00 730 87.29400 4314 4978 1 chr6D.!!$R1 664
7 TraesCS2B01G213500 chr6D 437660203 437660831 628 False 544.00 544 82.51500 14 657 1 chr6D.!!$F1 643
8 TraesCS2B01G213500 chr7B 122623458 122624256 798 False 580.50 701 91.61450 4314 5093 2 chr7B.!!$F4 779
9 TraesCS2B01G213500 chr7B 592352463 592353124 661 False 534.00 534 82.03200 13 660 1 chr7B.!!$F1 647
10 TraesCS2B01G213500 chr7B 650643198 650643743 545 False 442.00 442 81.51400 98 660 1 chr7B.!!$F2 562
11 TraesCS2B01G213500 chr2D 74518351 74518935 584 False 697.00 697 88.20600 4564 5158 1 chr2D.!!$F2 594
12 TraesCS2B01G213500 chr2D 9184565 9185149 584 False 669.00 669 87.35400 4564 5158 1 chr2D.!!$F1 594
13 TraesCS2B01G213500 chr2D 31397735 31398318 583 True 667.00 667 87.35400 4564 5158 1 chr2D.!!$R1 594
14 TraesCS2B01G213500 chr4A 154317690 154318273 583 False 684.00 684 87.85400 4564 5158 1 chr4A.!!$F2 594
15 TraesCS2B01G213500 chr3B 719422656 719423233 577 False 676.00 676 87.79300 4564 5155 1 chr3B.!!$F1 591
16 TraesCS2B01G213500 chr1D 480816901 480817536 635 False 579.00 579 83.93100 14 622 1 chr1D.!!$F3 608
17 TraesCS2B01G213500 chr1B 150207923 150208588 665 False 508.00 508 80.79100 13 712 1 chr1B.!!$F1 699
18 TraesCS2B01G213500 chr7D 524874324 524874861 537 False 523.00 523 84.53000 125 657 1 chr7D.!!$F1 532
19 TraesCS2B01G213500 chr4B 85640359 85640904 545 False 483.00 483 82.92300 102 660 1 chr4B.!!$F1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
882 3968 0.318762 GTCTCTCGGCCATCCATACC 59.681 60.000 2.24 0.0 0.0 2.73 F
1233 4330 0.919780 TCGAGGAGGAGGAGGAGGAA 60.920 60.000 0.00 0.0 0.0 3.36 F
1980 5086 1.134371 GTCTATGTGTCTTCAGGGGCC 60.134 57.143 0.00 0.0 0.0 5.80 F
2339 5445 2.300437 AGGTAATTGATCGAGCTAGGCC 59.700 50.000 0.90 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2254 5360 1.115467 AGATTCCGTAGTGGCTCCAG 58.885 55.0 0.0 0.0 37.80 3.86 R
3214 6353 2.044492 ACTGTATGGGGAGAGGTGAGAA 59.956 50.0 0.0 0.0 0.00 2.87 R
3311 6450 1.996786 GATGCAGCCGTGGGAACATG 61.997 60.0 0.0 0.0 46.14 3.21 R
4275 7773 0.032815 CGCAAAACCCCACCGATTTT 59.967 50.0 0.0 0.0 0.00 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 92 4.036262 TGTCTGTCAGTGTGTAAAAATGCC 59.964 41.667 0.00 0.00 0.00 4.40
94 96 4.160439 TGTCAGTGTGTAAAAATGCCCAAA 59.840 37.500 0.00 0.00 0.00 3.28
239 1852 7.227992 TCGATTTCAAAAATTGTTCACCAAC 57.772 32.000 0.00 0.00 35.44 3.77
242 1855 8.174422 CGATTTCAAAAATTGTTCACCAACTTT 58.826 29.630 0.00 0.00 34.16 2.66
259 1872 9.919348 CACCAACTTTAAAATTTGTTCATTGAG 57.081 29.630 0.00 0.00 0.00 3.02
762 2423 2.386661 TTTTAGCGAAGGAGGAGCAG 57.613 50.000 0.00 0.00 0.00 4.24
767 2428 2.498726 GAAGGAGGAGCAGGCGAG 59.501 66.667 0.00 0.00 0.00 5.03
793 2454 1.348064 CCTCGATGGGCCCTTATGTA 58.652 55.000 25.70 0.07 0.00 2.29
794 2455 1.002087 CCTCGATGGGCCCTTATGTAC 59.998 57.143 25.70 3.07 0.00 2.90
795 2456 1.971357 CTCGATGGGCCCTTATGTACT 59.029 52.381 25.70 0.00 0.00 2.73
796 2457 1.968493 TCGATGGGCCCTTATGTACTC 59.032 52.381 25.70 1.48 0.00 2.59
859 3945 1.234615 GCAGCAAGCCTACCGTTTCA 61.235 55.000 0.00 0.00 37.23 2.69
861 3947 0.605589 AGCAAGCCTACCGTTTCACC 60.606 55.000 0.00 0.00 0.00 4.02
880 3966 1.332195 CTGTCTCTCGGCCATCCATA 58.668 55.000 2.24 0.00 0.00 2.74
881 3967 1.000283 CTGTCTCTCGGCCATCCATAC 60.000 57.143 2.24 0.00 0.00 2.39
882 3968 0.318762 GTCTCTCGGCCATCCATACC 59.681 60.000 2.24 0.00 0.00 2.73
907 3993 2.425683 CCCCAATCCCCAAACCGAATAT 60.426 50.000 0.00 0.00 0.00 1.28
989 4077 3.475774 CCGAAGCCGACGAAACCG 61.476 66.667 0.00 0.00 38.22 4.44
1031 4119 2.039624 GGAGAGCCTGGGTCCTCA 59.960 66.667 21.54 0.00 0.00 3.86
1074 4162 3.736224 CCCAGCCATCTGCCCAGT 61.736 66.667 0.00 0.00 42.71 4.00
1233 4330 0.919780 TCGAGGAGGAGGAGGAGGAA 60.920 60.000 0.00 0.00 0.00 3.36
1345 4442 8.294954 TCTACTTCCTCTGTTCCTAAATACTG 57.705 38.462 0.00 0.00 0.00 2.74
1346 4443 6.936968 ACTTCCTCTGTTCCTAAATACTGT 57.063 37.500 0.00 0.00 0.00 3.55
1347 4444 9.186837 CTACTTCCTCTGTTCCTAAATACTGTA 57.813 37.037 0.00 0.00 0.00 2.74
1348 4445 8.611051 ACTTCCTCTGTTCCTAAATACTGTAT 57.389 34.615 0.00 0.00 0.00 2.29
1450 4547 3.633525 TGCTCCGTATGTAGTCCGTATTT 59.366 43.478 0.00 0.00 0.00 1.40
1452 4549 4.543692 CTCCGTATGTAGTCCGTATTTGG 58.456 47.826 0.00 0.00 0.00 3.28
1454 4551 4.644234 TCCGTATGTAGTCCGTATTTGGAA 59.356 41.667 0.00 0.00 40.44 3.53
1455 4552 5.302568 TCCGTATGTAGTCCGTATTTGGAAT 59.697 40.000 0.00 0.00 40.44 3.01
1456 4553 6.489700 TCCGTATGTAGTCCGTATTTGGAATA 59.510 38.462 0.00 0.00 40.44 1.75
1457 4554 7.177216 TCCGTATGTAGTCCGTATTTGGAATAT 59.823 37.037 0.00 0.00 40.36 1.28
1458 4555 7.487189 CCGTATGTAGTCCGTATTTGGAATATC 59.513 40.741 0.00 0.00 40.36 1.63
1459 4556 8.242053 CGTATGTAGTCCGTATTTGGAATATCT 58.758 37.037 0.00 0.00 40.36 1.98
1579 4676 2.572556 AGAGTCTGAGTCCGAGTTCCTA 59.427 50.000 8.84 0.00 0.00 2.94
1778 4884 2.093106 GGTCAGTCGATCCTACACTGT 58.907 52.381 0.00 0.00 38.94 3.55
1973 5079 3.003480 GGCAACAGGTCTATGTGTCTTC 58.997 50.000 0.00 0.00 32.52 2.87
1980 5086 1.134371 GTCTATGTGTCTTCAGGGGCC 60.134 57.143 0.00 0.00 0.00 5.80
2151 5257 4.142227 GCTAGATCAACTCTTGGGTTACGA 60.142 45.833 0.00 0.00 35.28 3.43
2153 5259 3.833070 AGATCAACTCTTGGGTTACGAGT 59.167 43.478 0.00 0.00 39.53 4.18
2217 5323 3.401683 TCTCCGAATCCTATTCCTACCCT 59.598 47.826 0.00 0.00 0.00 4.34
2223 5329 5.047235 CGAATCCTATTCCTACCCTGTTAGG 60.047 48.000 0.00 0.00 34.30 2.69
2254 5360 2.361104 TTGCTGTTCGGGATGCCC 60.361 61.111 0.00 0.00 41.09 5.36
2339 5445 2.300437 AGGTAATTGATCGAGCTAGGCC 59.700 50.000 0.90 0.00 0.00 5.19
2375 5504 4.630894 TGTAACTTTTCAGTTGCAGTGG 57.369 40.909 2.20 0.00 46.97 4.00
2387 5516 4.696877 CAGTTGCAGTGGATGTGAGATTTA 59.303 41.667 0.00 0.00 0.00 1.40
2395 5524 7.596494 CAGTGGATGTGAGATTTATGTTGTTT 58.404 34.615 0.00 0.00 0.00 2.83
2539 5668 3.469008 TCTGTGTCACTTTTGGTCGAT 57.531 42.857 4.27 0.00 0.00 3.59
3172 6311 3.657239 TCATATAGGCCCACCATGACATT 59.343 43.478 0.00 0.00 39.06 2.71
3179 6318 2.879756 GCCCACCATGACATTGTACAGT 60.880 50.000 0.00 0.00 0.00 3.55
3214 6353 3.044894 CTCTCTTGCCTATCCCCTTCTT 58.955 50.000 0.00 0.00 0.00 2.52
3311 6450 1.153628 CCATCGTCGTGGGAAGACC 60.154 63.158 6.09 0.00 33.47 3.85
3454 6792 2.948979 CCAAACAGTGTCTGGCTTGTAA 59.051 45.455 1.85 0.00 35.51 2.41
4162 7660 2.514458 ACCATGGATGACTGAAACCC 57.486 50.000 21.47 0.00 0.00 4.11
4207 7705 8.791355 TTTTTATCTTCGTTCTAGCAAAAACC 57.209 30.769 0.00 0.00 0.00 3.27
4208 7706 4.663636 ATCTTCGTTCTAGCAAAAACCG 57.336 40.909 0.00 0.00 0.00 4.44
4209 7707 2.803956 TCTTCGTTCTAGCAAAAACCGG 59.196 45.455 0.00 0.00 0.00 5.28
4210 7708 2.243602 TCGTTCTAGCAAAAACCGGT 57.756 45.000 0.00 0.00 0.00 5.28
4211 7709 1.868498 TCGTTCTAGCAAAAACCGGTG 59.132 47.619 8.52 0.00 0.00 4.94
4212 7710 1.069500 CGTTCTAGCAAAAACCGGTGG 60.069 52.381 8.52 0.00 0.00 4.61
4213 7711 2.223745 GTTCTAGCAAAAACCGGTGGA 58.776 47.619 8.52 0.00 0.00 4.02
4214 7712 2.178912 TCTAGCAAAAACCGGTGGAG 57.821 50.000 8.52 0.00 0.00 3.86
4215 7713 1.165270 CTAGCAAAAACCGGTGGAGG 58.835 55.000 8.52 0.00 37.30 4.30
4217 7715 1.106944 AGCAAAAACCGGTGGAGGTG 61.107 55.000 8.52 3.57 45.21 4.00
4218 7716 2.037871 CAAAAACCGGTGGAGGTGG 58.962 57.895 8.52 0.00 45.21 4.61
4219 7717 1.830847 AAAAACCGGTGGAGGTGGC 60.831 57.895 8.52 0.00 45.21 5.01
4220 7718 2.575455 AAAAACCGGTGGAGGTGGCA 62.575 55.000 8.52 0.00 45.21 4.92
4221 7719 2.976494 AAAACCGGTGGAGGTGGCAG 62.976 60.000 8.52 0.00 45.21 4.85
4222 7720 4.954118 ACCGGTGGAGGTGGCAGA 62.954 66.667 6.12 0.00 44.07 4.26
4223 7721 4.087892 CCGGTGGAGGTGGCAGAG 62.088 72.222 0.00 0.00 0.00 3.35
4224 7722 2.997315 CGGTGGAGGTGGCAGAGA 60.997 66.667 0.00 0.00 0.00 3.10
4225 7723 2.583441 CGGTGGAGGTGGCAGAGAA 61.583 63.158 0.00 0.00 0.00 2.87
4226 7724 1.761174 GGTGGAGGTGGCAGAGAAA 59.239 57.895 0.00 0.00 0.00 2.52
4227 7725 0.110486 GGTGGAGGTGGCAGAGAAAA 59.890 55.000 0.00 0.00 0.00 2.29
4228 7726 1.272147 GGTGGAGGTGGCAGAGAAAAT 60.272 52.381 0.00 0.00 0.00 1.82
4229 7727 2.087646 GTGGAGGTGGCAGAGAAAATC 58.912 52.381 0.00 0.00 0.00 2.17
4230 7728 1.339055 TGGAGGTGGCAGAGAAAATCG 60.339 52.381 0.00 0.00 0.00 3.34
4231 7729 1.373570 GAGGTGGCAGAGAAAATCGG 58.626 55.000 0.00 0.00 0.00 4.18
4232 7730 0.693049 AGGTGGCAGAGAAAATCGGT 59.307 50.000 0.00 0.00 0.00 4.69
4233 7731 0.804989 GGTGGCAGAGAAAATCGGTG 59.195 55.000 0.00 0.00 0.00 4.94
4234 7732 0.804989 GTGGCAGAGAAAATCGGTGG 59.195 55.000 0.00 0.00 0.00 4.61
4235 7733 0.322456 TGGCAGAGAAAATCGGTGGG 60.322 55.000 0.00 0.00 0.00 4.61
4236 7734 0.035439 GGCAGAGAAAATCGGTGGGA 60.035 55.000 0.00 0.00 0.00 4.37
4237 7735 1.408822 GGCAGAGAAAATCGGTGGGAT 60.409 52.381 0.00 0.00 36.78 3.85
4238 7736 1.672881 GCAGAGAAAATCGGTGGGATG 59.327 52.381 0.00 0.00 34.93 3.51
4239 7737 2.680805 GCAGAGAAAATCGGTGGGATGA 60.681 50.000 0.00 0.00 34.93 2.92
4240 7738 3.201290 CAGAGAAAATCGGTGGGATGAG 58.799 50.000 0.00 0.00 34.93 2.90
4241 7739 3.107601 AGAGAAAATCGGTGGGATGAGA 58.892 45.455 0.00 0.00 34.93 3.27
4242 7740 3.133721 AGAGAAAATCGGTGGGATGAGAG 59.866 47.826 0.00 0.00 34.93 3.20
4243 7741 3.107601 AGAAAATCGGTGGGATGAGAGA 58.892 45.455 0.00 0.00 34.93 3.10
4244 7742 3.713764 AGAAAATCGGTGGGATGAGAGAT 59.286 43.478 0.00 0.00 34.93 2.75
4245 7743 4.164988 AGAAAATCGGTGGGATGAGAGATT 59.835 41.667 0.00 0.00 34.93 2.40
4246 7744 5.366768 AGAAAATCGGTGGGATGAGAGATTA 59.633 40.000 0.00 0.00 34.93 1.75
4247 7745 5.630415 AAATCGGTGGGATGAGAGATTAA 57.370 39.130 0.00 0.00 34.93 1.40
4248 7746 4.881019 ATCGGTGGGATGAGAGATTAAG 57.119 45.455 0.00 0.00 32.92 1.85
4249 7747 2.965831 TCGGTGGGATGAGAGATTAAGG 59.034 50.000 0.00 0.00 0.00 2.69
4250 7748 2.965831 CGGTGGGATGAGAGATTAAGGA 59.034 50.000 0.00 0.00 0.00 3.36
4251 7749 3.006323 CGGTGGGATGAGAGATTAAGGAG 59.994 52.174 0.00 0.00 0.00 3.69
4252 7750 4.227197 GGTGGGATGAGAGATTAAGGAGA 58.773 47.826 0.00 0.00 0.00 3.71
4253 7751 4.843516 GGTGGGATGAGAGATTAAGGAGAT 59.156 45.833 0.00 0.00 0.00 2.75
4254 7752 5.279910 GGTGGGATGAGAGATTAAGGAGATG 60.280 48.000 0.00 0.00 0.00 2.90
4255 7753 4.842948 TGGGATGAGAGATTAAGGAGATGG 59.157 45.833 0.00 0.00 0.00 3.51
4256 7754 4.323409 GGGATGAGAGATTAAGGAGATGGC 60.323 50.000 0.00 0.00 0.00 4.40
4257 7755 4.531732 GGATGAGAGATTAAGGAGATGGCT 59.468 45.833 0.00 0.00 0.00 4.75
4258 7756 4.952071 TGAGAGATTAAGGAGATGGCTG 57.048 45.455 0.00 0.00 0.00 4.85
4259 7757 4.293494 TGAGAGATTAAGGAGATGGCTGT 58.707 43.478 0.00 0.00 0.00 4.40
4260 7758 4.718774 TGAGAGATTAAGGAGATGGCTGTT 59.281 41.667 0.00 0.00 0.00 3.16
4261 7759 5.190528 TGAGAGATTAAGGAGATGGCTGTTT 59.809 40.000 0.00 0.00 0.00 2.83
4262 7760 6.072199 AGAGATTAAGGAGATGGCTGTTTT 57.928 37.500 0.00 0.00 0.00 2.43
4263 7761 6.488715 AGAGATTAAGGAGATGGCTGTTTTT 58.511 36.000 0.00 0.00 0.00 1.94
4285 7783 6.569179 TTTAGAGGAAAAGAAAATCGGTGG 57.431 37.500 0.00 0.00 0.00 4.61
4286 7784 3.421844 AGAGGAAAAGAAAATCGGTGGG 58.578 45.455 0.00 0.00 0.00 4.61
4287 7785 2.492088 GAGGAAAAGAAAATCGGTGGGG 59.508 50.000 0.00 0.00 0.00 4.96
4288 7786 2.158370 AGGAAAAGAAAATCGGTGGGGT 60.158 45.455 0.00 0.00 0.00 4.95
4289 7787 2.631062 GGAAAAGAAAATCGGTGGGGTT 59.369 45.455 0.00 0.00 0.00 4.11
4290 7788 3.070446 GGAAAAGAAAATCGGTGGGGTTT 59.930 43.478 0.00 0.00 0.00 3.27
4291 7789 4.443739 GGAAAAGAAAATCGGTGGGGTTTT 60.444 41.667 0.00 0.00 0.00 2.43
4292 7790 3.744238 AAGAAAATCGGTGGGGTTTTG 57.256 42.857 0.00 0.00 0.00 2.44
4293 7791 1.343142 AGAAAATCGGTGGGGTTTTGC 59.657 47.619 0.00 0.00 0.00 3.68
4294 7792 0.032815 AAAATCGGTGGGGTTTTGCG 59.967 50.000 0.00 0.00 0.00 4.85
4295 7793 1.811645 AAATCGGTGGGGTTTTGCGG 61.812 55.000 0.00 0.00 0.00 5.69
4296 7794 4.958897 TCGGTGGGGTTTTGCGGG 62.959 66.667 0.00 0.00 0.00 6.13
4298 7796 4.607025 GGTGGGGTTTTGCGGGGA 62.607 66.667 0.00 0.00 0.00 4.81
4299 7797 2.283604 GTGGGGTTTTGCGGGGAT 60.284 61.111 0.00 0.00 0.00 3.85
4300 7798 2.036572 TGGGGTTTTGCGGGGATC 59.963 61.111 0.00 0.00 0.00 3.36
4301 7799 3.138128 GGGGTTTTGCGGGGATCG 61.138 66.667 0.00 0.00 42.76 3.69
4312 7810 3.873812 GGGATCGCGGGGTCCATT 61.874 66.667 30.47 0.00 36.19 3.16
4328 7826 2.572556 TCCATTAGGCCTCGTTTGGTAA 59.427 45.455 9.68 0.00 33.74 2.85
4356 7854 2.930826 TTGAGAGGTTTGGTGAGGAC 57.069 50.000 0.00 0.00 0.00 3.85
4393 7892 0.107654 GTGAATCCCCCTCTTCCACG 60.108 60.000 0.00 0.00 0.00 4.94
4482 7985 7.068593 TGACAGGGATGGATTTTCATATTGAAC 59.931 37.037 0.00 0.00 35.89 3.18
4562 8065 6.655078 ACATAATTTGCTTGACTTGGACTT 57.345 33.333 0.00 0.00 0.00 3.01
4598 8101 4.156008 GGGACCAAACACAAAGCATACTAG 59.844 45.833 0.00 0.00 0.00 2.57
4735 8272 7.974504 TCCCTCTAATTATTTACTGTCATCCC 58.025 38.462 0.00 0.00 0.00 3.85
4906 8443 5.647658 CAGCATGAAAACCCACACTTCTATA 59.352 40.000 0.00 0.00 39.69 1.31
4982 8519 0.473501 AGAGGAGAGGGATGGCCATC 60.474 60.000 33.90 33.90 45.21 3.51
5012 8549 1.204704 AGTCTCATCGATGGACGCAAA 59.795 47.619 26.93 9.86 42.26 3.68
5067 8606 1.178276 GGACGAGGAGCAAGAAGAGA 58.822 55.000 0.00 0.00 0.00 3.10
5128 8677 3.116199 AGGATAGGGGAGGAATCACATCA 60.116 47.826 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 3.317711 TGGGCATTTTTACACACTGACAG 59.682 43.478 0.00 0.00 0.00 3.51
76 78 4.066646 ACCTTTGGGCATTTTTACACAC 57.933 40.909 0.00 0.00 35.63 3.82
208 1782 8.914654 TGAACAATTTTTGAAATCGATGATGAC 58.085 29.630 0.00 0.00 0.00 3.06
524 2145 9.871359 CATAATTCGCAATTTAGAAAAGTTTCG 57.129 29.630 0.00 0.00 36.06 3.46
696 2357 3.121030 GAGCGAACATGCCAGCGT 61.121 61.111 0.00 0.00 34.65 5.07
745 2406 1.961180 GCCTGCTCCTCCTTCGCTAA 61.961 60.000 0.00 0.00 0.00 3.09
746 2407 2.427245 GCCTGCTCCTCCTTCGCTA 61.427 63.158 0.00 0.00 0.00 4.26
747 2408 3.780173 GCCTGCTCCTCCTTCGCT 61.780 66.667 0.00 0.00 0.00 4.93
749 2410 3.423162 CTCGCCTGCTCCTCCTTCG 62.423 68.421 0.00 0.00 0.00 3.79
750 2411 1.893919 AACTCGCCTGCTCCTCCTTC 61.894 60.000 0.00 0.00 0.00 3.46
794 2455 2.105128 GTGCCCGACTCGATGGAG 59.895 66.667 2.78 2.78 46.13 3.86
795 2456 3.822192 CGTGCCCGACTCGATGGA 61.822 66.667 0.00 0.00 37.45 3.41
796 2457 4.873129 CCGTGCCCGACTCGATGG 62.873 72.222 0.00 0.00 37.45 3.51
859 3945 2.060980 GGATGGCCGAGAGACAGGT 61.061 63.158 0.00 0.00 0.00 4.00
861 3947 1.000283 GTATGGATGGCCGAGAGACAG 60.000 57.143 0.00 0.00 36.79 3.51
880 3966 1.731324 TTTGGGGATTGGGGTTCGGT 61.731 55.000 0.00 0.00 0.00 4.69
881 3967 1.077625 TTTGGGGATTGGGGTTCGG 59.922 57.895 0.00 0.00 0.00 4.30
882 3968 1.254975 GGTTTGGGGATTGGGGTTCG 61.255 60.000 0.00 0.00 0.00 3.95
907 3993 5.661056 TCTTTCTTGATCTAGGAGCGAAA 57.339 39.130 4.29 0.00 0.00 3.46
916 4002 5.360591 GGCGAAGGATTCTTTCTTGATCTA 58.639 41.667 6.91 0.00 44.75 1.98
989 4077 0.227234 CGACAACATCGCGATGCTAC 59.773 55.000 40.92 28.58 45.52 3.58
1074 4162 4.301072 AAGATCTGTGGGGATTTCGAAA 57.699 40.909 13.91 13.91 0.00 3.46
1138 4226 2.473070 TCTAAACACATCGATGGGGGA 58.527 47.619 30.17 18.70 34.87 4.81
1365 4462 7.878127 CCATCCGTATGTAGTTCTTATCCAAAT 59.122 37.037 0.00 0.00 0.00 2.32
1369 4466 6.585695 TCCATCCGTATGTAGTTCTTATCC 57.414 41.667 0.00 0.00 0.00 2.59
1457 4554 9.211485 CCGTTTCTAAATACAAGTCCTTTTAGA 57.789 33.333 0.00 0.00 38.33 2.10
1458 4555 9.211485 TCCGTTTCTAAATACAAGTCCTTTTAG 57.789 33.333 0.00 0.00 34.47 1.85
1459 4556 9.211485 CTCCGTTTCTAAATACAAGTCCTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
1460 4557 7.174426 CCTCCGTTTCTAAATACAAGTCCTTTT 59.826 37.037 0.00 0.00 0.00 2.27
1778 4884 7.768582 GGAAATTTCTTCCCTGAGAAAACAAAA 59.231 33.333 17.42 0.00 45.68 2.44
1980 5086 1.529226 TATTCACGGTGGTGGCAAAG 58.471 50.000 8.50 0.00 44.50 2.77
2151 5257 3.834813 TCTGTAGCATCAGTCTTGGAACT 59.165 43.478 7.77 0.00 36.85 3.01
2153 5259 4.713814 AGATCTGTAGCATCAGTCTTGGAA 59.286 41.667 0.00 0.00 36.85 3.53
2217 5323 4.947388 GCAACAATTCCATAGACCCTAACA 59.053 41.667 0.00 0.00 0.00 2.41
2223 5329 4.437390 CGAACAGCAACAATTCCATAGACC 60.437 45.833 0.00 0.00 0.00 3.85
2254 5360 1.115467 AGATTCCGTAGTGGCTCCAG 58.885 55.000 0.00 0.00 37.80 3.86
2387 5516 9.480053 CCAAGTAATGAAGAATCAAAACAACAT 57.520 29.630 0.00 0.00 39.49 2.71
2395 5524 7.122650 GGATCCAACCAAGTAATGAAGAATCAA 59.877 37.037 6.95 0.00 39.49 2.57
2539 5668 4.522789 GTCAAGATTCAGTGGCCCTTTTTA 59.477 41.667 0.00 0.00 0.00 1.52
3012 6150 7.569111 ACCTCCATTCACCTGTATTACTATCTT 59.431 37.037 0.00 0.00 0.00 2.40
3149 6288 3.259328 TGTCATGGTGGGCCTATATGAT 58.741 45.455 17.75 0.00 30.56 2.45
3172 6311 3.262405 AGGAAGGCCGATTAAACTGTACA 59.738 43.478 0.00 0.00 39.96 2.90
3179 6318 3.873910 CAAGAGAGGAAGGCCGATTAAA 58.126 45.455 0.00 0.00 39.96 1.52
3214 6353 2.044492 ACTGTATGGGGAGAGGTGAGAA 59.956 50.000 0.00 0.00 0.00 2.87
3311 6450 1.996786 GATGCAGCCGTGGGAACATG 61.997 60.000 0.00 0.00 46.14 3.21
3354 6692 3.517901 CACCCCCTCTTCAACATACACTA 59.482 47.826 0.00 0.00 0.00 2.74
4193 7691 2.223745 TCCACCGGTTTTTGCTAGAAC 58.776 47.619 2.97 0.00 0.00 3.01
4194 7692 2.500229 CTCCACCGGTTTTTGCTAGAA 58.500 47.619 2.97 0.00 0.00 2.10
4195 7693 1.271163 CCTCCACCGGTTTTTGCTAGA 60.271 52.381 2.97 0.00 0.00 2.43
4196 7694 1.165270 CCTCCACCGGTTTTTGCTAG 58.835 55.000 2.97 0.00 0.00 3.42
4197 7695 0.475044 ACCTCCACCGGTTTTTGCTA 59.525 50.000 2.97 0.00 31.94 3.49
4198 7696 1.106944 CACCTCCACCGGTTTTTGCT 61.107 55.000 2.97 0.00 34.29 3.91
4199 7697 1.362355 CACCTCCACCGGTTTTTGC 59.638 57.895 2.97 0.00 34.29 3.68
4200 7698 2.037871 CCACCTCCACCGGTTTTTG 58.962 57.895 2.97 0.00 34.29 2.44
4201 7699 1.830847 GCCACCTCCACCGGTTTTT 60.831 57.895 2.97 0.00 34.29 1.94
4202 7700 2.203437 GCCACCTCCACCGGTTTT 60.203 61.111 2.97 0.00 34.29 2.43
4203 7701 3.491598 CTGCCACCTCCACCGGTTT 62.492 63.158 2.97 0.00 34.29 3.27
4204 7702 3.953775 CTGCCACCTCCACCGGTT 61.954 66.667 2.97 0.00 34.29 4.44
4205 7703 4.954118 TCTGCCACCTCCACCGGT 62.954 66.667 0.00 0.00 37.93 5.28
4206 7704 4.087892 CTCTGCCACCTCCACCGG 62.088 72.222 0.00 0.00 0.00 5.28
4207 7705 2.111999 TTTCTCTGCCACCTCCACCG 62.112 60.000 0.00 0.00 0.00 4.94
4208 7706 0.110486 TTTTCTCTGCCACCTCCACC 59.890 55.000 0.00 0.00 0.00 4.61
4209 7707 2.087646 GATTTTCTCTGCCACCTCCAC 58.912 52.381 0.00 0.00 0.00 4.02
4210 7708 1.339055 CGATTTTCTCTGCCACCTCCA 60.339 52.381 0.00 0.00 0.00 3.86
4211 7709 1.373570 CGATTTTCTCTGCCACCTCC 58.626 55.000 0.00 0.00 0.00 4.30
4212 7710 1.339151 ACCGATTTTCTCTGCCACCTC 60.339 52.381 0.00 0.00 0.00 3.85
4213 7711 0.693049 ACCGATTTTCTCTGCCACCT 59.307 50.000 0.00 0.00 0.00 4.00
4214 7712 0.804989 CACCGATTTTCTCTGCCACC 59.195 55.000 0.00 0.00 0.00 4.61
4215 7713 0.804989 CCACCGATTTTCTCTGCCAC 59.195 55.000 0.00 0.00 0.00 5.01
4216 7714 0.322456 CCCACCGATTTTCTCTGCCA 60.322 55.000 0.00 0.00 0.00 4.92
4217 7715 0.035439 TCCCACCGATTTTCTCTGCC 60.035 55.000 0.00 0.00 0.00 4.85
4218 7716 1.672881 CATCCCACCGATTTTCTCTGC 59.327 52.381 0.00 0.00 0.00 4.26
4219 7717 3.118629 TCTCATCCCACCGATTTTCTCTG 60.119 47.826 0.00 0.00 0.00 3.35
4220 7718 3.107601 TCTCATCCCACCGATTTTCTCT 58.892 45.455 0.00 0.00 0.00 3.10
4221 7719 3.133003 TCTCTCATCCCACCGATTTTCTC 59.867 47.826 0.00 0.00 0.00 2.87
4222 7720 3.107601 TCTCTCATCCCACCGATTTTCT 58.892 45.455 0.00 0.00 0.00 2.52
4223 7721 3.543680 TCTCTCATCCCACCGATTTTC 57.456 47.619 0.00 0.00 0.00 2.29
4224 7722 4.510167 AATCTCTCATCCCACCGATTTT 57.490 40.909 0.00 0.00 0.00 1.82
4225 7723 5.455326 CCTTAATCTCTCATCCCACCGATTT 60.455 44.000 0.00 0.00 0.00 2.17
4226 7724 4.040952 CCTTAATCTCTCATCCCACCGATT 59.959 45.833 0.00 0.00 0.00 3.34
4227 7725 3.580458 CCTTAATCTCTCATCCCACCGAT 59.420 47.826 0.00 0.00 0.00 4.18
4228 7726 2.965831 CCTTAATCTCTCATCCCACCGA 59.034 50.000 0.00 0.00 0.00 4.69
4229 7727 2.965831 TCCTTAATCTCTCATCCCACCG 59.034 50.000 0.00 0.00 0.00 4.94
4230 7728 4.227197 TCTCCTTAATCTCTCATCCCACC 58.773 47.826 0.00 0.00 0.00 4.61
4231 7729 5.279910 CCATCTCCTTAATCTCTCATCCCAC 60.280 48.000 0.00 0.00 0.00 4.61
4232 7730 4.842948 CCATCTCCTTAATCTCTCATCCCA 59.157 45.833 0.00 0.00 0.00 4.37
4233 7731 4.323409 GCCATCTCCTTAATCTCTCATCCC 60.323 50.000 0.00 0.00 0.00 3.85
4234 7732 4.531732 AGCCATCTCCTTAATCTCTCATCC 59.468 45.833 0.00 0.00 0.00 3.51
4235 7733 5.011943 ACAGCCATCTCCTTAATCTCTCATC 59.988 44.000 0.00 0.00 0.00 2.92
4236 7734 4.906664 ACAGCCATCTCCTTAATCTCTCAT 59.093 41.667 0.00 0.00 0.00 2.90
4237 7735 4.293494 ACAGCCATCTCCTTAATCTCTCA 58.707 43.478 0.00 0.00 0.00 3.27
4238 7736 4.953940 ACAGCCATCTCCTTAATCTCTC 57.046 45.455 0.00 0.00 0.00 3.20
4239 7737 5.707066 AAACAGCCATCTCCTTAATCTCT 57.293 39.130 0.00 0.00 0.00 3.10
4240 7738 6.765915 AAAAACAGCCATCTCCTTAATCTC 57.234 37.500 0.00 0.00 0.00 2.75
4260 7758 7.430441 CCACCGATTTTCTTTTCCTCTAAAAA 58.570 34.615 0.00 0.00 36.64 1.94
4261 7759 6.015772 CCCACCGATTTTCTTTTCCTCTAAAA 60.016 38.462 0.00 0.00 35.74 1.52
4262 7760 5.475564 CCCACCGATTTTCTTTTCCTCTAAA 59.524 40.000 0.00 0.00 0.00 1.85
4263 7761 5.007682 CCCACCGATTTTCTTTTCCTCTAA 58.992 41.667 0.00 0.00 0.00 2.10
4264 7762 4.566907 CCCCACCGATTTTCTTTTCCTCTA 60.567 45.833 0.00 0.00 0.00 2.43
4265 7763 3.421844 CCCACCGATTTTCTTTTCCTCT 58.578 45.455 0.00 0.00 0.00 3.69
4266 7764 2.492088 CCCCACCGATTTTCTTTTCCTC 59.508 50.000 0.00 0.00 0.00 3.71
4267 7765 2.158370 ACCCCACCGATTTTCTTTTCCT 60.158 45.455 0.00 0.00 0.00 3.36
4268 7766 2.244695 ACCCCACCGATTTTCTTTTCC 58.755 47.619 0.00 0.00 0.00 3.13
4269 7767 4.330944 AAACCCCACCGATTTTCTTTTC 57.669 40.909 0.00 0.00 0.00 2.29
4270 7768 4.447290 CAAAACCCCACCGATTTTCTTTT 58.553 39.130 0.00 0.00 0.00 2.27
4271 7769 3.742954 GCAAAACCCCACCGATTTTCTTT 60.743 43.478 0.00 0.00 0.00 2.52
4272 7770 2.224185 GCAAAACCCCACCGATTTTCTT 60.224 45.455 0.00 0.00 0.00 2.52
4273 7771 1.343142 GCAAAACCCCACCGATTTTCT 59.657 47.619 0.00 0.00 0.00 2.52
4274 7772 1.790755 GCAAAACCCCACCGATTTTC 58.209 50.000 0.00 0.00 0.00 2.29
4275 7773 0.032815 CGCAAAACCCCACCGATTTT 59.967 50.000 0.00 0.00 0.00 1.82
4276 7774 1.663173 CGCAAAACCCCACCGATTT 59.337 52.632 0.00 0.00 0.00 2.17
4277 7775 2.272447 CCGCAAAACCCCACCGATT 61.272 57.895 0.00 0.00 0.00 3.34
4278 7776 2.675075 CCGCAAAACCCCACCGAT 60.675 61.111 0.00 0.00 0.00 4.18
4279 7777 4.958897 CCCGCAAAACCCCACCGA 62.959 66.667 0.00 0.00 0.00 4.69
4281 7779 3.897681 ATCCCCGCAAAACCCCACC 62.898 63.158 0.00 0.00 0.00 4.61
4282 7780 2.283604 ATCCCCGCAAAACCCCAC 60.284 61.111 0.00 0.00 0.00 4.61
4283 7781 2.036572 GATCCCCGCAAAACCCCA 59.963 61.111 0.00 0.00 0.00 4.96
4284 7782 3.138128 CGATCCCCGCAAAACCCC 61.138 66.667 0.00 0.00 0.00 4.95
4295 7793 2.450479 CTAATGGACCCCGCGATCCC 62.450 65.000 8.23 3.52 33.69 3.85
4296 7794 1.004918 CTAATGGACCCCGCGATCC 60.005 63.158 8.23 12.58 35.37 3.36
4297 7795 1.004918 CCTAATGGACCCCGCGATC 60.005 63.158 8.23 1.36 34.57 3.69
4298 7796 3.148084 CCTAATGGACCCCGCGAT 58.852 61.111 8.23 0.00 34.57 4.58
4299 7797 3.857038 GCCTAATGGACCCCGCGA 61.857 66.667 8.23 0.00 34.57 5.87
4300 7798 4.929707 GGCCTAATGGACCCCGCG 62.930 72.222 0.00 0.00 34.48 6.46
4301 7799 3.477578 GAGGCCTAATGGACCCCGC 62.478 68.421 4.42 0.00 44.45 6.13
4302 7800 2.829592 GAGGCCTAATGGACCCCG 59.170 66.667 4.42 0.00 44.45 5.73
4303 7801 1.632965 AACGAGGCCTAATGGACCCC 61.633 60.000 4.42 0.00 44.45 4.95
4304 7802 0.255033 AAACGAGGCCTAATGGACCC 59.745 55.000 4.42 0.00 44.45 4.46
4305 7803 1.379527 CAAACGAGGCCTAATGGACC 58.620 55.000 4.42 0.00 44.45 4.46
4306 7804 1.339727 ACCAAACGAGGCCTAATGGAC 60.340 52.381 24.66 4.89 43.41 4.02
4307 7805 0.988832 ACCAAACGAGGCCTAATGGA 59.011 50.000 24.66 0.00 34.57 3.41
4308 7806 2.702592 TACCAAACGAGGCCTAATGG 57.297 50.000 19.01 19.01 0.00 3.16
4309 7807 3.869065 TCTTACCAAACGAGGCCTAATG 58.131 45.455 4.42 0.29 0.00 1.90
4310 7808 3.518303 ACTCTTACCAAACGAGGCCTAAT 59.482 43.478 4.42 0.00 0.00 1.73
4311 7809 2.901839 ACTCTTACCAAACGAGGCCTAA 59.098 45.455 4.42 0.00 0.00 2.69
4312 7810 2.232941 CACTCTTACCAAACGAGGCCTA 59.767 50.000 4.42 0.00 0.00 3.93
4328 7826 3.395941 ACCAAACCTCTCAAATCCACTCT 59.604 43.478 0.00 0.00 0.00 3.24
4356 7854 1.750778 CACCAAATCCCTGAAATCCCG 59.249 52.381 0.00 0.00 0.00 5.14
4405 7904 0.704076 TGGAGGGGGATTTGAGGTTG 59.296 55.000 0.00 0.00 0.00 3.77
4562 8065 5.659079 GTGTTTGGTCCCCATCCATAAATTA 59.341 40.000 0.00 0.00 34.75 1.40
4584 8087 5.705441 TGGTTCCTTTCTAGTATGCTTTGTG 59.295 40.000 0.00 0.00 0.00 3.33
4598 8101 8.912988 TGGATATTGATATTGTTGGTTCCTTTC 58.087 33.333 0.00 0.00 0.00 2.62
4618 8122 5.658190 CCTGTCCCTTTGTTTCAATGGATAT 59.342 40.000 13.52 0.00 0.00 1.63
4674 8211 4.043200 GGTTTGTCCAGCCTGCGC 62.043 66.667 0.00 0.00 35.97 6.09
4735 8272 0.175989 GGACTAGAAGCAAGGTCCCG 59.824 60.000 0.00 0.00 41.48 5.14
4814 8351 2.305927 TCAAGGTCCCTGGATGAACTTC 59.694 50.000 0.00 0.00 37.67 3.01
4884 8421 6.509418 TTATAGAAGTGTGGGTTTTCATGC 57.491 37.500 0.00 0.00 0.00 4.06
4906 8443 8.704668 AGAACCAGTACCTTGATTTGAATTTTT 58.295 29.630 0.00 0.00 0.00 1.94
4982 8519 1.144565 CGATGAGACTGCTTGCCTCG 61.145 60.000 0.00 0.00 0.00 4.63
4989 8526 0.383590 CGTCCATCGATGAGACTGCT 59.616 55.000 28.60 0.00 42.86 4.24
5012 8549 4.262377 CCATGGCTCGATCTGAATAGTTCT 60.262 45.833 0.00 0.00 0.00 3.01
5067 8606 1.277557 CCCTGCAAACTCTAGAGCTGT 59.722 52.381 19.97 2.45 0.00 4.40
5077 8616 1.544917 ATCCCCTCCCCTGCAAACT 60.545 57.895 0.00 0.00 0.00 2.66
5128 8677 1.382146 TCCTCCGCCGGTTATTCCT 60.382 57.895 1.63 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.