Multiple sequence alignment - TraesCS2B01G213300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G213300 chr2B 100.000 3660 0 0 928 4587 197717836 197721495 0.000000e+00 6759.0
1 TraesCS2B01G213300 chr2B 100.000 547 0 0 1 547 197716909 197717455 0.000000e+00 1011.0
2 TraesCS2B01G213300 chr2B 96.429 112 4 0 4473 4584 52527534 52527645 7.840000e-43 185.0
3 TraesCS2B01G213300 chr2A 95.348 3203 107 14 928 4102 161858079 161854891 0.000000e+00 5051.0
4 TraesCS2B01G213300 chr2A 91.017 423 27 8 1 415 161858907 161858488 1.110000e-155 560.0
5 TraesCS2B01G213300 chr2A 92.254 142 4 2 406 547 161858457 161858323 1.300000e-45 195.0
6 TraesCS2B01G213300 chr2A 83.108 148 16 5 4171 4309 161854892 161854745 4.820000e-25 126.0
7 TraesCS2B01G213300 chr2A 90.141 71 4 3 4108 4175 754039082 754039012 6.320000e-14 89.8
8 TraesCS2B01G213300 chr2D 96.039 2903 69 8 928 3814 139058234 139061106 0.000000e+00 4682.0
9 TraesCS2B01G213300 chr2D 84.906 477 51 13 88 547 139057520 139057992 3.230000e-126 462.0
10 TraesCS2B01G213300 chr2D 88.462 78 6 3 4105 4179 8495904 8495981 1.760000e-14 91.6
11 TraesCS2B01G213300 chr7B 100.000 168 0 0 4310 4477 452963750 452963583 1.240000e-80 311.0
12 TraesCS2B01G213300 chr7B 97.714 175 3 1 4306 4480 580857465 580857638 2.680000e-77 300.0
13 TraesCS2B01G213300 chr3B 94.012 167 10 0 4310 4476 629551778 629551944 2.120000e-63 254.0
14 TraesCS2B01G213300 chr3B 92.857 168 11 1 4307 4473 51787771 51787938 4.580000e-60 243.0
15 TraesCS2B01G213300 chr5B 93.491 169 11 0 4308 4476 502500375 502500207 7.620000e-63 252.0
16 TraesCS2B01G213300 chr3D 93.452 168 11 0 4308 4475 467281038 467281205 2.740000e-62 250.0
17 TraesCS2B01G213300 chr3D 95.349 43 2 0 1 43 551078025 551078067 8.230000e-08 69.4
18 TraesCS2B01G213300 chr6B 94.375 160 9 0 4314 4473 20716847 20717006 3.540000e-61 246.0
19 TraesCS2B01G213300 chr7A 88.557 201 23 0 4314 4514 448101001 448101201 1.270000e-60 244.0
20 TraesCS2B01G213300 chr7A 87.931 116 14 0 4472 4587 238114514 238114629 2.230000e-28 137.0
21 TraesCS2B01G213300 chr7D 92.771 166 12 0 4308 4473 622227551 622227716 1.650000e-59 241.0
22 TraesCS2B01G213300 chr7D 92.373 118 8 1 4471 4587 199823024 199822907 2.840000e-37 167.0
23 TraesCS2B01G213300 chr7D 91.150 113 10 0 4473 4585 263967087 263967199 2.210000e-33 154.0
24 TraesCS2B01G213300 chr4B 95.690 116 5 0 4472 4587 111783593 111783708 2.180000e-43 187.0
25 TraesCS2B01G213300 chr4A 92.562 121 8 1 4467 4587 284949707 284949826 6.100000e-39 172.0
26 TraesCS2B01G213300 chr4D 92.035 113 9 0 4475 4587 464142427 464142539 4.750000e-35 159.0
27 TraesCS2B01G213300 chr1A 91.379 116 10 0 4472 4587 493271164 493271279 4.750000e-35 159.0
28 TraesCS2B01G213300 chr1A 86.747 83 5 6 4096 4172 454330123 454330205 2.270000e-13 87.9
29 TraesCS2B01G213300 chr1B 86.726 113 15 0 4475 4587 520349100 520348988 4.820000e-25 126.0
30 TraesCS2B01G213300 chr1B 91.935 62 4 1 4104 4165 132296714 132296774 8.180000e-13 86.1
31 TraesCS2B01G213300 chr1D 92.754 69 1 4 4107 4172 80839308 80839375 3.780000e-16 97.1
32 TraesCS2B01G213300 chr1D 88.000 75 7 2 4100 4172 257365448 257365374 2.270000e-13 87.9
33 TraesCS2B01G213300 chr5D 91.549 71 3 3 4104 4172 415263952 415263883 1.360000e-15 95.3
34 TraesCS2B01G213300 chr6D 87.342 79 4 5 4100 4173 368365361 368365284 8.180000e-13 86.1
35 TraesCS2B01G213300 chr6A 87.342 79 4 5 4100 4173 509279134 509279057 8.180000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G213300 chr2B 197716909 197721495 4586 False 3885 6759 100.00000 1 4587 2 chr2B.!!$F2 4586
1 TraesCS2B01G213300 chr2A 161854745 161858907 4162 True 1483 5051 90.43175 1 4309 4 chr2A.!!$R2 4308
2 TraesCS2B01G213300 chr2D 139057520 139061106 3586 False 2572 4682 90.47250 88 3814 2 chr2D.!!$F2 3726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 303 0.103390 TCCGTCGTTTTCAGTGCTCA 59.897 50.000 0.0 0.0 0.0 4.26 F
297 305 1.126846 CCGTCGTTTTCAGTGCTCATC 59.873 52.381 0.0 0.0 0.0 2.92 F
2039 2100 1.535204 GCATGTGGTGAACTTGGGGG 61.535 60.000 0.0 0.0 35.1 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 2100 0.172803 CTGCTTTCCATGCTTCAGCC 59.827 55.000 0.00 0.0 41.18 4.85 R
2041 2102 1.132643 GAGCTGCTTTCCATGCTTCAG 59.867 52.381 2.53 0.0 35.76 3.02 R
4028 4120 0.109412 GCACAAGCAGCTCATTGTCC 60.109 55.000 9.58 0.0 37.54 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 97 5.810080 ACCCGAATTGATTTTACCCAAAA 57.190 34.783 0.00 0.00 38.00 2.44
235 237 2.289010 GCCAACTTAGTTTGCTGCCAAT 60.289 45.455 13.00 0.00 32.52 3.16
277 279 4.370364 TTTTGCTTCCACTCACTTGTTC 57.630 40.909 0.00 0.00 0.00 3.18
295 303 0.103390 TCCGTCGTTTTCAGTGCTCA 59.897 50.000 0.00 0.00 0.00 4.26
297 305 1.126846 CCGTCGTTTTCAGTGCTCATC 59.873 52.381 0.00 0.00 0.00 2.92
323 331 5.437289 TTGCTCAAATTTGGTCTACACAG 57.563 39.130 17.90 6.61 0.00 3.66
327 335 6.544197 TGCTCAAATTTGGTCTACACAGTTTA 59.456 34.615 17.90 0.00 0.00 2.01
328 336 7.230510 TGCTCAAATTTGGTCTACACAGTTTAT 59.769 33.333 17.90 0.00 0.00 1.40
329 337 7.750903 GCTCAAATTTGGTCTACACAGTTTATC 59.249 37.037 17.90 0.00 0.00 1.75
340 352 2.355756 CACAGTTTATCGGCATTCCCAG 59.644 50.000 0.00 0.00 0.00 4.45
352 364 2.365293 GCATTCCCAGGTTTCTGTTTGT 59.635 45.455 0.00 0.00 39.31 2.83
386 398 2.780010 CTCCCTCATACCCCAATGAACT 59.220 50.000 0.00 0.00 35.51 3.01
387 399 2.777692 TCCCTCATACCCCAATGAACTC 59.222 50.000 0.00 0.00 35.51 3.01
453 504 2.094752 CGCCTAAACCCCAAACAAGATG 60.095 50.000 0.00 0.00 0.00 2.90
454 505 2.897326 GCCTAAACCCCAAACAAGATGT 59.103 45.455 0.00 0.00 0.00 3.06
484 545 1.687563 AAAAACAAGACTCCGTGGGG 58.312 50.000 0.00 0.00 0.00 4.96
1053 1114 2.046023 TTCGACTCCGTCCCGCTA 60.046 61.111 0.00 0.00 37.05 4.26
1170 1231 1.984570 CTCTGACTCCCTTCGCCCA 60.985 63.158 0.00 0.00 0.00 5.36
1614 1675 1.835494 TTACTAGCGTCCTGAGTGCT 58.165 50.000 0.00 0.00 42.58 4.40
1659 1720 1.971149 ATGGGAAGTCTGTCCATGGA 58.029 50.000 11.44 11.44 39.56 3.41
2039 2100 1.535204 GCATGTGGTGAACTTGGGGG 61.535 60.000 0.00 0.00 35.10 5.40
2481 2542 5.713389 AGAAGCAATGGATTTGATCAAGACA 59.287 36.000 8.41 9.39 37.53 3.41
2709 2770 1.151810 TGGGGTGAAGAAGGAGCCT 60.152 57.895 0.00 0.00 0.00 4.58
2795 2856 1.929836 GGAAGCGCATGAAGTCTACAG 59.070 52.381 11.47 0.00 0.00 2.74
2962 3023 0.823356 GTTGCCTCTTGGAGCCACAA 60.823 55.000 0.00 0.00 34.57 3.33
3048 3109 1.882352 GCAGTTGGACGGGAGATTGTT 60.882 52.381 0.00 0.00 0.00 2.83
3120 3181 9.119418 TCATGTGGTAATTATTGGTGAATGTAG 57.881 33.333 0.00 0.00 0.00 2.74
3122 3183 6.320164 TGTGGTAATTATTGGTGAATGTAGGC 59.680 38.462 0.00 0.00 0.00 3.93
3127 3189 7.480760 AATTATTGGTGAATGTAGGCTTTGT 57.519 32.000 0.00 0.00 0.00 2.83
3161 3223 2.523440 TGGACCTTCCAACAGACGT 58.477 52.632 0.00 0.00 45.00 4.34
3169 3232 3.307480 CCTTCCAACAGACGTCCCTTAAT 60.307 47.826 13.01 0.00 0.00 1.40
3221 3285 5.084519 TGTATAGGATCATGTCTGGTACCC 58.915 45.833 10.07 0.00 0.00 3.69
3222 3286 2.568546 AGGATCATGTCTGGTACCCA 57.431 50.000 10.07 0.00 0.00 4.51
3275 3339 4.664150 TCCCAGTGGACAATTTTTGAAC 57.336 40.909 11.95 0.00 35.03 3.18
3295 3360 4.506886 ACGAGAGAAGTCCACTTTACAG 57.493 45.455 0.00 0.00 36.11 2.74
3333 3399 1.206371 CGTCTAAGATTCAACCCCCGT 59.794 52.381 0.00 0.00 0.00 5.28
3444 3510 4.749099 TCCAAAAATTGCACCTCGATTTTG 59.251 37.500 6.77 8.81 44.18 2.44
3448 3514 5.452078 AAATTGCACCTCGATTTTGAGAA 57.548 34.783 0.00 0.00 35.71 2.87
3461 3527 9.098355 CTCGATTTTGAGAACAATATTGGACTA 57.902 33.333 19.37 4.18 38.28 2.59
3557 3624 8.458843 TGTTTCAGCTTTATTTTACCAGCTATC 58.541 33.333 0.00 0.00 40.75 2.08
3572 3639 7.865706 ACCAGCTATCTTGGTTGTAAATAAG 57.134 36.000 0.00 0.00 30.72 1.73
3663 3743 8.195436 TCTGTTAACTATACAGTCTATGGTTGC 58.805 37.037 7.22 0.00 42.77 4.17
3664 3744 8.074613 TGTTAACTATACAGTCTATGGTTGCT 57.925 34.615 7.22 0.00 32.29 3.91
3665 3745 8.195436 TGTTAACTATACAGTCTATGGTTGCTC 58.805 37.037 7.22 0.00 32.29 4.26
3666 3746 6.791867 AACTATACAGTCTATGGTTGCTCA 57.208 37.500 0.00 0.00 32.29 4.26
3667 3747 6.150396 ACTATACAGTCTATGGTTGCTCAC 57.850 41.667 0.00 0.00 0.00 3.51
3668 3748 5.656859 ACTATACAGTCTATGGTTGCTCACA 59.343 40.000 0.00 0.00 0.00 3.58
3669 3749 3.045601 ACAGTCTATGGTTGCTCACAC 57.954 47.619 0.00 0.00 0.00 3.82
3670 3750 2.368548 ACAGTCTATGGTTGCTCACACA 59.631 45.455 0.00 0.00 0.00 3.72
3695 3775 3.110358 TGTGTCTCGTAAACAAGTGACG 58.890 45.455 2.51 2.51 37.93 4.35
3712 3792 2.502130 TGACGGATGGGTGTGCTAATTA 59.498 45.455 0.00 0.00 0.00 1.40
3764 3844 5.066505 GCCGATGTGATTTTCTTTGGTATCT 59.933 40.000 0.00 0.00 0.00 1.98
3801 3881 3.573967 ACCAATCCAGTTTGTTAAGGCAG 59.426 43.478 0.00 0.00 0.00 4.85
3840 3920 1.589803 GTTAAGTTCAGGTGCCGTGT 58.410 50.000 0.00 0.00 0.00 4.49
3843 3923 0.108585 AAGTTCAGGTGCCGTGTCAT 59.891 50.000 0.00 0.00 0.00 3.06
3852 3932 1.269448 GTGCCGTGTCATGTTCCATTT 59.731 47.619 0.00 0.00 0.00 2.32
3857 3937 4.024048 GCCGTGTCATGTTCCATTTATAGG 60.024 45.833 0.00 0.00 0.00 2.57
3864 3944 6.206829 GTCATGTTCCATTTATAGGGCCTAAC 59.793 42.308 18.91 10.88 0.00 2.34
3942 4022 1.422977 TAGGCAAGGAACTGGTGGCA 61.423 55.000 0.00 0.00 43.10 4.92
3943 4023 2.270986 GGCAAGGAACTGGTGGCAG 61.271 63.158 0.00 0.00 40.79 4.85
3944 4024 1.228245 GCAAGGAACTGGTGGCAGA 60.228 57.895 0.00 0.00 40.86 4.26
3946 4026 1.457346 CAAGGAACTGGTGGCAGATC 58.543 55.000 0.00 0.00 40.86 2.75
3991 4083 0.537143 TTTCACAATGCTGGCGAGGT 60.537 50.000 0.00 0.00 0.00 3.85
4006 4098 2.935238 GCGAGGTTGGAAAGATACTGCA 60.935 50.000 0.00 0.00 0.00 4.41
4015 4107 4.194640 GGAAAGATACTGCATTGAGCTCA 58.805 43.478 13.74 13.74 45.94 4.26
4016 4108 4.637534 GGAAAGATACTGCATTGAGCTCAA 59.362 41.667 30.23 30.23 45.94 3.02
4017 4109 5.220815 GGAAAGATACTGCATTGAGCTCAAG 60.221 44.000 31.14 23.17 45.94 3.02
4018 4110 4.484537 AGATACTGCATTGAGCTCAAGT 57.515 40.909 31.14 25.09 45.94 3.16
4019 4111 5.604758 AGATACTGCATTGAGCTCAAGTA 57.395 39.130 31.14 26.23 45.94 2.24
4020 4112 6.172136 AGATACTGCATTGAGCTCAAGTAT 57.828 37.500 31.14 29.02 45.94 2.12
4021 4113 5.990386 AGATACTGCATTGAGCTCAAGTATG 59.010 40.000 30.21 25.35 45.94 2.39
4024 4116 4.394300 ACTGCATTGAGCTCAAGTATGAAC 59.606 41.667 31.14 14.81 45.94 3.18
4025 4117 4.325972 TGCATTGAGCTCAAGTATGAACA 58.674 39.130 31.14 16.86 45.94 3.18
4026 4118 4.154737 TGCATTGAGCTCAAGTATGAACAC 59.845 41.667 31.14 13.91 45.94 3.32
4027 4119 4.437930 GCATTGAGCTCAAGTATGAACACC 60.438 45.833 31.14 10.40 39.47 4.16
4028 4120 2.959516 TGAGCTCAAGTATGAACACCG 58.040 47.619 15.67 0.00 34.49 4.94
4030 4122 1.899814 AGCTCAAGTATGAACACCGGA 59.100 47.619 9.46 0.00 34.49 5.14
4031 4123 2.000447 GCTCAAGTATGAACACCGGAC 59.000 52.381 9.46 0.00 34.49 4.79
4033 4125 3.659786 CTCAAGTATGAACACCGGACAA 58.340 45.455 9.46 0.00 34.49 3.18
4034 4126 4.253685 CTCAAGTATGAACACCGGACAAT 58.746 43.478 9.46 0.00 34.49 2.71
4035 4127 4.000325 TCAAGTATGAACACCGGACAATG 59.000 43.478 9.46 0.00 30.99 2.82
4036 4128 3.973206 AGTATGAACACCGGACAATGA 57.027 42.857 9.46 0.00 0.00 2.57
4037 4129 3.861840 AGTATGAACACCGGACAATGAG 58.138 45.455 9.46 0.00 0.00 2.90
4041 4133 1.237285 AACACCGGACAATGAGCTGC 61.237 55.000 9.46 0.00 0.00 5.25
4047 4139 0.109412 GGACAATGAGCTGCTTGTGC 60.109 55.000 13.67 12.75 35.80 4.57
4068 4160 1.570813 TACTTCATCAGCGGCGAATG 58.429 50.000 12.98 11.06 0.00 2.67
4070 4162 1.434622 CTTCATCAGCGGCGAATGCT 61.435 55.000 12.98 0.00 45.31 3.79
4073 4165 0.234106 CATCAGCGGCGAATGCTTAG 59.766 55.000 12.98 0.00 41.72 2.18
4090 4182 4.222810 TGCTTAGTTTAGTGCCTGATCTGA 59.777 41.667 0.38 0.00 0.00 3.27
4102 4194 4.937620 TGCCTGATCTGACATCTGTTTTAC 59.062 41.667 0.38 0.00 0.00 2.01
4104 4196 6.070824 TGCCTGATCTGACATCTGTTTTACTA 60.071 38.462 0.38 0.00 0.00 1.82
4106 4198 7.323420 CCTGATCTGACATCTGTTTTACTACA 58.677 38.462 0.38 0.00 0.00 2.74
4107 4199 7.276658 CCTGATCTGACATCTGTTTTACTACAC 59.723 40.741 0.38 0.00 0.00 2.90
4108 4200 7.097192 TGATCTGACATCTGTTTTACTACACC 58.903 38.462 0.00 0.00 0.00 4.16
4109 4201 5.790593 TCTGACATCTGTTTTACTACACCC 58.209 41.667 0.00 0.00 0.00 4.61
4110 4202 5.542635 TCTGACATCTGTTTTACTACACCCT 59.457 40.000 0.00 0.00 0.00 4.34
4111 4203 5.790593 TGACATCTGTTTTACTACACCCTC 58.209 41.667 0.00 0.00 0.00 4.30
4112 4204 5.161943 ACATCTGTTTTACTACACCCTCC 57.838 43.478 0.00 0.00 0.00 4.30
4113 4205 3.947910 TCTGTTTTACTACACCCTCCG 57.052 47.619 0.00 0.00 0.00 4.63
4114 4206 3.233507 TCTGTTTTACTACACCCTCCGT 58.766 45.455 0.00 0.00 0.00 4.69
4115 4207 4.406456 TCTGTTTTACTACACCCTCCGTA 58.594 43.478 0.00 0.00 0.00 4.02
4116 4208 4.832266 TCTGTTTTACTACACCCTCCGTAA 59.168 41.667 0.00 0.00 0.00 3.18
4117 4209 5.304101 TCTGTTTTACTACACCCTCCGTAAA 59.696 40.000 0.00 0.00 32.00 2.01
4118 4210 5.540911 TGTTTTACTACACCCTCCGTAAAG 58.459 41.667 0.00 0.00 34.50 1.85
4119 4211 5.304101 TGTTTTACTACACCCTCCGTAAAGA 59.696 40.000 0.00 0.00 34.50 2.52
4120 4212 6.183360 TGTTTTACTACACCCTCCGTAAAGAA 60.183 38.462 0.00 0.00 34.50 2.52
4121 4213 6.418057 TTTACTACACCCTCCGTAAAGAAA 57.582 37.500 0.00 0.00 30.79 2.52
4122 4214 6.610075 TTACTACACCCTCCGTAAAGAAAT 57.390 37.500 0.00 0.00 0.00 2.17
4123 4215 7.716799 TTACTACACCCTCCGTAAAGAAATA 57.283 36.000 0.00 0.00 0.00 1.40
4124 4216 6.803366 ACTACACCCTCCGTAAAGAAATAT 57.197 37.500 0.00 0.00 0.00 1.28
4125 4217 7.902920 ACTACACCCTCCGTAAAGAAATATA 57.097 36.000 0.00 0.00 0.00 0.86
4126 4218 8.310122 ACTACACCCTCCGTAAAGAAATATAA 57.690 34.615 0.00 0.00 0.00 0.98
4127 4219 8.419442 ACTACACCCTCCGTAAAGAAATATAAG 58.581 37.037 0.00 0.00 0.00 1.73
4128 4220 7.427989 ACACCCTCCGTAAAGAAATATAAGA 57.572 36.000 0.00 0.00 0.00 2.10
4129 4221 7.498443 ACACCCTCCGTAAAGAAATATAAGAG 58.502 38.462 0.00 0.00 0.00 2.85
4130 4222 6.424207 CACCCTCCGTAAAGAAATATAAGAGC 59.576 42.308 0.00 0.00 0.00 4.09
4131 4223 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
4132 4224 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
4133 4225 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
4134 4226 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
4135 4227 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
4136 4228 9.585099 TCCGTAAAGAAATATAAGAGCGTTTAA 57.415 29.630 0.00 0.00 0.00 1.52
4155 4247 9.931210 GCGTTTAAATACTAAATGCTCTTGTAT 57.069 29.630 12.14 0.00 42.79 2.29
4165 4257 8.665685 ACTAAATGCTCTTGTATTTCTTTACGG 58.334 33.333 0.00 0.00 38.89 4.02
4166 4258 6.436843 AATGCTCTTGTATTTCTTTACGGG 57.563 37.500 0.00 0.00 0.00 5.28
4167 4259 4.258543 TGCTCTTGTATTTCTTTACGGGG 58.741 43.478 0.00 0.00 0.00 5.73
4168 4260 4.020039 TGCTCTTGTATTTCTTTACGGGGA 60.020 41.667 0.00 0.00 0.00 4.81
4169 4261 4.571176 GCTCTTGTATTTCTTTACGGGGAG 59.429 45.833 0.00 0.00 0.00 4.30
4170 4262 5.731591 CTCTTGTATTTCTTTACGGGGAGT 58.268 41.667 0.00 0.00 0.00 3.85
4171 4263 6.628844 GCTCTTGTATTTCTTTACGGGGAGTA 60.629 42.308 0.00 0.00 0.00 2.59
4172 4264 7.427989 TCTTGTATTTCTTTACGGGGAGTAT 57.572 36.000 0.00 0.00 34.88 2.12
4173 4265 7.854337 TCTTGTATTTCTTTACGGGGAGTATT 58.146 34.615 0.00 0.00 34.88 1.89
4174 4266 8.323567 TCTTGTATTTCTTTACGGGGAGTATTT 58.676 33.333 0.00 0.00 34.88 1.40
4175 4267 8.496707 TTGTATTTCTTTACGGGGAGTATTTC 57.503 34.615 0.00 0.00 34.88 2.17
4176 4268 7.854337 TGTATTTCTTTACGGGGAGTATTTCT 58.146 34.615 0.00 0.00 34.88 2.52
4177 4269 7.767198 TGTATTTCTTTACGGGGAGTATTTCTG 59.233 37.037 0.00 0.00 34.88 3.02
4189 4281 4.000988 GAGTATTTCTGTTCGCCTTTCCA 58.999 43.478 0.00 0.00 0.00 3.53
4190 4282 4.394729 AGTATTTCTGTTCGCCTTTCCAA 58.605 39.130 0.00 0.00 0.00 3.53
4196 4288 3.697045 TCTGTTCGCCTTTCCAAAGAAAA 59.303 39.130 0.32 0.00 41.40 2.29
4207 4299 1.135517 CCAAAGAAAATACCGGTGCCG 60.136 52.381 19.93 3.25 39.44 5.69
4209 4301 1.900245 AAGAAAATACCGGTGCCGTT 58.100 45.000 19.93 5.80 37.81 4.44
4210 4302 1.161843 AGAAAATACCGGTGCCGTTG 58.838 50.000 19.93 0.00 37.81 4.10
4219 4311 1.942223 GGTGCCGTTGTTTTGACGC 60.942 57.895 0.00 0.00 39.09 5.19
4230 4328 4.908687 TTGACGCACCAGCACGCT 62.909 61.111 0.00 0.00 42.27 5.07
4237 4335 0.179189 GCACCAGCACGCTGATAAAC 60.179 55.000 20.42 1.71 46.30 2.01
4277 4375 5.352284 ACCTTTGCTCGTTCTGTATAGATG 58.648 41.667 0.00 0.00 31.81 2.90
4281 4381 3.381590 TGCTCGTTCTGTATAGATGTGCT 59.618 43.478 13.47 0.00 33.23 4.40
4283 4383 4.210832 TCGTTCTGTATAGATGTGCTCG 57.789 45.455 0.00 0.00 31.81 5.03
4289 4389 3.717707 TGTATAGATGTGCTCGCCTTTC 58.282 45.455 0.00 0.00 0.00 2.62
4309 4409 4.261578 TCGATTGTAAACTTCGAACCCT 57.738 40.909 0.00 0.00 38.80 4.34
4310 4410 4.634199 TCGATTGTAAACTTCGAACCCTT 58.366 39.130 0.00 0.00 38.80 3.95
4311 4411 5.782047 TCGATTGTAAACTTCGAACCCTTA 58.218 37.500 0.00 0.00 38.80 2.69
4312 4412 6.400568 TCGATTGTAAACTTCGAACCCTTAT 58.599 36.000 0.00 0.00 38.80 1.73
4313 4413 6.311935 TCGATTGTAAACTTCGAACCCTTATG 59.688 38.462 0.00 0.00 38.80 1.90
4314 4414 5.616488 TTGTAAACTTCGAACCCTTATGC 57.384 39.130 0.00 0.00 0.00 3.14
4315 4415 4.004982 TGTAAACTTCGAACCCTTATGCC 58.995 43.478 0.00 0.00 0.00 4.40
4316 4416 1.734163 AACTTCGAACCCTTATGCCG 58.266 50.000 0.00 0.00 0.00 5.69
4317 4417 0.743345 ACTTCGAACCCTTATGCCGC 60.743 55.000 0.00 0.00 0.00 6.53
4318 4418 1.762222 CTTCGAACCCTTATGCCGCG 61.762 60.000 0.00 0.00 0.00 6.46
4319 4419 3.937062 CGAACCCTTATGCCGCGC 61.937 66.667 0.00 0.00 0.00 6.86
4320 4420 2.513897 GAACCCTTATGCCGCGCT 60.514 61.111 5.56 0.00 0.00 5.92
4321 4421 2.045340 AACCCTTATGCCGCGCTT 60.045 55.556 5.56 0.00 0.00 4.68
4322 4422 2.322999 GAACCCTTATGCCGCGCTTG 62.323 60.000 5.56 0.00 0.00 4.01
4323 4423 3.585990 CCCTTATGCCGCGCTTGG 61.586 66.667 5.56 0.18 0.00 3.61
4324 4424 2.513666 CCTTATGCCGCGCTTGGA 60.514 61.111 5.56 0.00 0.00 3.53
4325 4425 2.112198 CCTTATGCCGCGCTTGGAA 61.112 57.895 5.56 0.00 0.00 3.53
4326 4426 1.447317 CCTTATGCCGCGCTTGGAAT 61.447 55.000 5.56 2.40 0.00 3.01
4327 4427 0.040958 CTTATGCCGCGCTTGGAATC 60.041 55.000 5.56 0.00 0.00 2.52
4328 4428 1.771073 TTATGCCGCGCTTGGAATCG 61.771 55.000 5.56 0.00 0.00 3.34
4331 4431 3.864686 CCGCGCTTGGAATCGGTG 61.865 66.667 5.56 0.00 37.33 4.94
4332 4432 3.118454 CGCGCTTGGAATCGGTGT 61.118 61.111 5.56 0.00 0.00 4.16
4333 4433 1.807981 CGCGCTTGGAATCGGTGTA 60.808 57.895 5.56 0.00 0.00 2.90
4334 4434 1.355796 CGCGCTTGGAATCGGTGTAA 61.356 55.000 5.56 0.00 0.00 2.41
4335 4435 0.800012 GCGCTTGGAATCGGTGTAAA 59.200 50.000 0.00 0.00 0.00 2.01
4336 4436 1.400494 GCGCTTGGAATCGGTGTAAAT 59.600 47.619 0.00 0.00 0.00 1.40
4337 4437 2.610374 GCGCTTGGAATCGGTGTAAATA 59.390 45.455 0.00 0.00 0.00 1.40
4338 4438 3.064271 GCGCTTGGAATCGGTGTAAATAA 59.936 43.478 0.00 0.00 0.00 1.40
4339 4439 4.437659 GCGCTTGGAATCGGTGTAAATAAA 60.438 41.667 0.00 0.00 0.00 1.40
4340 4440 5.732247 GCGCTTGGAATCGGTGTAAATAAAT 60.732 40.000 0.00 0.00 0.00 1.40
4341 4441 6.512091 GCGCTTGGAATCGGTGTAAATAAATA 60.512 38.462 0.00 0.00 0.00 1.40
4342 4442 6.849305 CGCTTGGAATCGGTGTAAATAAATAC 59.151 38.462 0.00 0.00 0.00 1.89
4343 4443 7.466185 CGCTTGGAATCGGTGTAAATAAATACA 60.466 37.037 0.00 0.00 33.52 2.29
4344 4444 7.855904 GCTTGGAATCGGTGTAAATAAATACAG 59.144 37.037 0.00 0.00 36.51 2.74
4345 4445 9.104965 CTTGGAATCGGTGTAAATAAATACAGA 57.895 33.333 0.00 0.00 36.51 3.41
4346 4446 9.621629 TTGGAATCGGTGTAAATAAATACAGAT 57.378 29.630 0.00 0.00 36.51 2.90
4347 4447 9.051679 TGGAATCGGTGTAAATAAATACAGATG 57.948 33.333 0.00 0.00 36.51 2.90
4348 4448 9.052759 GGAATCGGTGTAAATAAATACAGATGT 57.947 33.333 0.00 0.00 36.51 3.06
4364 4464 6.737254 ACAGATGTATTTTTCTTACGGGTG 57.263 37.500 0.00 0.00 0.00 4.61
4365 4465 6.235664 ACAGATGTATTTTTCTTACGGGTGT 58.764 36.000 0.00 0.00 0.00 4.16
4366 4466 7.388437 ACAGATGTATTTTTCTTACGGGTGTA 58.612 34.615 0.00 0.00 0.00 2.90
4367 4467 8.044908 ACAGATGTATTTTTCTTACGGGTGTAT 58.955 33.333 0.00 0.00 0.00 2.29
4368 4468 8.548721 CAGATGTATTTTTCTTACGGGTGTATC 58.451 37.037 0.00 0.00 0.00 2.24
4369 4469 8.483758 AGATGTATTTTTCTTACGGGTGTATCT 58.516 33.333 0.00 0.00 0.00 1.98
4370 4470 9.106070 GATGTATTTTTCTTACGGGTGTATCTT 57.894 33.333 0.00 0.00 0.00 2.40
4372 4472 9.369904 TGTATTTTTCTTACGGGTGTATCTTAC 57.630 33.333 0.00 0.00 0.00 2.34
4373 4473 9.591792 GTATTTTTCTTACGGGTGTATCTTACT 57.408 33.333 0.00 0.00 0.00 2.24
4374 4474 7.894376 TTTTTCTTACGGGTGTATCTTACTG 57.106 36.000 0.00 0.00 0.00 2.74
4375 4475 5.587388 TTCTTACGGGTGTATCTTACTGG 57.413 43.478 0.00 0.00 0.00 4.00
4376 4476 3.382546 TCTTACGGGTGTATCTTACTGGC 59.617 47.826 0.00 0.00 0.00 4.85
4377 4477 0.828677 ACGGGTGTATCTTACTGGCC 59.171 55.000 0.00 0.00 0.00 5.36
4378 4478 0.828022 CGGGTGTATCTTACTGGCCA 59.172 55.000 4.71 4.71 0.00 5.36
4379 4479 1.202533 CGGGTGTATCTTACTGGCCAG 60.203 57.143 31.60 31.60 0.00 4.85
4380 4480 1.141053 GGGTGTATCTTACTGGCCAGG 59.859 57.143 35.42 18.81 0.00 4.45
4381 4481 2.116238 GGTGTATCTTACTGGCCAGGA 58.884 52.381 35.42 27.38 0.00 3.86
4382 4482 2.103263 GGTGTATCTTACTGGCCAGGAG 59.897 54.545 35.42 29.45 0.00 3.69
4383 4483 1.762957 TGTATCTTACTGGCCAGGAGC 59.237 52.381 35.42 18.98 42.60 4.70
4384 4484 1.040646 TATCTTACTGGCCAGGAGCG 58.959 55.000 35.42 21.95 45.17 5.03
4385 4485 0.687757 ATCTTACTGGCCAGGAGCGA 60.688 55.000 35.42 26.13 45.17 4.93
4386 4486 0.687757 TCTTACTGGCCAGGAGCGAT 60.688 55.000 35.42 16.75 45.17 4.58
4387 4487 0.179000 CTTACTGGCCAGGAGCGATT 59.821 55.000 35.42 15.99 45.17 3.34
4388 4488 0.618458 TTACTGGCCAGGAGCGATTT 59.382 50.000 35.42 15.23 45.17 2.17
4389 4489 0.107703 TACTGGCCAGGAGCGATTTG 60.108 55.000 35.42 8.79 45.17 2.32
4390 4490 2.751436 TGGCCAGGAGCGATTTGC 60.751 61.111 0.00 0.00 45.17 3.68
4400 4500 3.735894 CGATTTGCACGCCGAAAC 58.264 55.556 0.00 0.00 0.00 2.78
4401 4501 2.137395 CGATTTGCACGCCGAAACG 61.137 57.895 0.00 0.00 39.50 3.60
4402 4502 1.205568 GATTTGCACGCCGAAACGA 59.794 52.632 0.00 0.00 36.70 3.85
4403 4503 0.384974 GATTTGCACGCCGAAACGAA 60.385 50.000 0.00 0.00 36.70 3.85
4404 4504 0.029567 ATTTGCACGCCGAAACGAAA 59.970 45.000 0.00 0.00 36.70 3.46
4405 4505 0.179171 TTTGCACGCCGAAACGAAAA 60.179 45.000 0.00 0.00 36.70 2.29
4406 4506 0.862283 TTGCACGCCGAAACGAAAAC 60.862 50.000 0.00 0.00 36.70 2.43
4407 4507 2.344237 GCACGCCGAAACGAAAACG 61.344 57.895 0.00 0.00 36.70 3.60
4408 4508 1.273300 CACGCCGAAACGAAAACGA 59.727 52.632 0.00 0.00 36.70 3.85
4409 4509 0.111001 CACGCCGAAACGAAAACGAT 60.111 50.000 0.00 0.00 36.70 3.73
4410 4510 0.111001 ACGCCGAAACGAAAACGATG 60.111 50.000 0.00 0.00 36.70 3.84
4411 4511 0.787908 CGCCGAAACGAAAACGATGG 60.788 55.000 0.00 0.00 34.06 3.51
4412 4512 1.063412 GCCGAAACGAAAACGATGGC 61.063 55.000 0.00 0.00 0.00 4.40
4413 4513 0.453782 CCGAAACGAAAACGATGGCC 60.454 55.000 0.00 0.00 0.00 5.36
4414 4514 0.787908 CGAAACGAAAACGATGGCCG 60.788 55.000 0.00 0.00 45.44 6.13
4415 4515 0.453782 GAAACGAAAACGATGGCCGG 60.454 55.000 0.00 0.00 43.93 6.13
4416 4516 1.167781 AAACGAAAACGATGGCCGGT 61.168 50.000 1.90 0.00 43.93 5.28
4417 4517 1.847890 AACGAAAACGATGGCCGGTG 61.848 55.000 1.90 0.00 43.93 4.94
4418 4518 2.874751 GAAAACGATGGCCGGTGG 59.125 61.111 1.90 0.00 43.93 4.61
4428 4528 2.033602 GCCGGTGGCCTGTAACTT 59.966 61.111 3.32 0.00 44.06 2.66
4429 4529 1.602605 GCCGGTGGCCTGTAACTTT 60.603 57.895 3.32 0.00 44.06 2.66
4430 4530 1.176619 GCCGGTGGCCTGTAACTTTT 61.177 55.000 3.32 0.00 44.06 2.27
4431 4531 1.883209 GCCGGTGGCCTGTAACTTTTA 60.883 52.381 3.32 0.00 44.06 1.52
4432 4532 1.808343 CCGGTGGCCTGTAACTTTTAC 59.192 52.381 3.32 0.00 0.00 2.01
4433 4533 2.496111 CGGTGGCCTGTAACTTTTACA 58.504 47.619 3.32 0.00 0.00 2.41
4434 4534 2.879646 CGGTGGCCTGTAACTTTTACAA 59.120 45.455 3.32 0.00 0.00 2.41
4435 4535 3.058501 CGGTGGCCTGTAACTTTTACAAG 60.059 47.826 3.32 0.00 35.92 3.16
4436 4536 3.887110 GGTGGCCTGTAACTTTTACAAGT 59.113 43.478 3.32 0.00 45.89 3.16
4437 4537 4.261447 GGTGGCCTGTAACTTTTACAAGTG 60.261 45.833 3.32 0.00 42.89 3.16
4438 4538 4.337274 GTGGCCTGTAACTTTTACAAGTGT 59.663 41.667 3.32 0.00 42.89 3.55
4439 4539 5.528320 GTGGCCTGTAACTTTTACAAGTGTA 59.472 40.000 3.32 0.00 42.89 2.90
4440 4540 6.206048 GTGGCCTGTAACTTTTACAAGTGTAT 59.794 38.462 3.32 0.00 42.89 2.29
4441 4541 6.773685 TGGCCTGTAACTTTTACAAGTGTATT 59.226 34.615 3.32 0.00 42.89 1.89
4442 4542 7.040961 TGGCCTGTAACTTTTACAAGTGTATTC 60.041 37.037 3.32 0.00 42.89 1.75
4443 4543 7.040961 GGCCTGTAACTTTTACAAGTGTATTCA 60.041 37.037 0.00 0.00 42.89 2.57
4444 4544 8.347035 GCCTGTAACTTTTACAAGTGTATTCAA 58.653 33.333 0.00 0.00 42.89 2.69
4455 4555 9.531942 TTACAAGTGTATTCAAAGTAGAAACGA 57.468 29.630 0.00 0.00 0.00 3.85
4456 4556 7.848491 ACAAGTGTATTCAAAGTAGAAACGAC 58.152 34.615 0.00 0.00 0.00 4.34
4457 4557 7.493320 ACAAGTGTATTCAAAGTAGAAACGACA 59.507 33.333 0.00 0.00 0.00 4.35
4458 4558 8.495949 CAAGTGTATTCAAAGTAGAAACGACAT 58.504 33.333 0.00 0.00 0.00 3.06
4459 4559 8.603242 AGTGTATTCAAAGTAGAAACGACATT 57.397 30.769 0.00 0.00 0.00 2.71
4460 4560 8.709646 AGTGTATTCAAAGTAGAAACGACATTC 58.290 33.333 0.00 0.00 0.00 2.67
4461 4561 7.955864 GTGTATTCAAAGTAGAAACGACATTCC 59.044 37.037 0.00 0.00 0.00 3.01
4462 4562 7.658167 TGTATTCAAAGTAGAAACGACATTCCA 59.342 33.333 0.00 0.00 0.00 3.53
4463 4563 6.928979 TTCAAAGTAGAAACGACATTCCAA 57.071 33.333 0.00 0.00 0.00 3.53
4464 4564 6.928979 TCAAAGTAGAAACGACATTCCAAA 57.071 33.333 0.00 0.00 0.00 3.28
4465 4565 6.721321 TCAAAGTAGAAACGACATTCCAAAC 58.279 36.000 0.00 0.00 0.00 2.93
4466 4566 6.316640 TCAAAGTAGAAACGACATTCCAAACA 59.683 34.615 0.00 0.00 0.00 2.83
4467 4567 5.924475 AGTAGAAACGACATTCCAAACAG 57.076 39.130 0.00 0.00 0.00 3.16
4468 4568 4.755123 AGTAGAAACGACATTCCAAACAGG 59.245 41.667 0.00 0.00 39.47 4.00
4469 4569 2.884639 AGAAACGACATTCCAAACAGGG 59.115 45.455 0.00 0.00 38.24 4.45
4470 4570 0.958822 AACGACATTCCAAACAGGGC 59.041 50.000 0.00 0.00 38.24 5.19
4471 4571 0.893727 ACGACATTCCAAACAGGGCC 60.894 55.000 0.00 0.00 38.24 5.80
4472 4572 0.609131 CGACATTCCAAACAGGGCCT 60.609 55.000 0.00 0.00 38.24 5.19
4473 4573 1.632589 GACATTCCAAACAGGGCCTT 58.367 50.000 1.32 0.00 38.24 4.35
4474 4574 2.802719 GACATTCCAAACAGGGCCTTA 58.197 47.619 1.32 0.00 38.24 2.69
4475 4575 2.755103 GACATTCCAAACAGGGCCTTAG 59.245 50.000 1.32 0.00 38.24 2.18
4476 4576 2.102578 CATTCCAAACAGGGCCTTAGG 58.897 52.381 1.32 3.33 38.24 2.69
4486 4586 3.512516 GCCTTAGGCTGCGCTTGG 61.513 66.667 17.16 0.00 46.69 3.61
4487 4587 2.045926 CCTTAGGCTGCGCTTGGT 60.046 61.111 9.73 0.00 0.00 3.67
4488 4588 1.220749 CCTTAGGCTGCGCTTGGTA 59.779 57.895 9.73 0.00 0.00 3.25
4489 4589 0.179045 CCTTAGGCTGCGCTTGGTAT 60.179 55.000 9.73 0.00 0.00 2.73
4490 4590 0.940126 CTTAGGCTGCGCTTGGTATG 59.060 55.000 9.73 0.00 0.00 2.39
4491 4591 0.463654 TTAGGCTGCGCTTGGTATGG 60.464 55.000 9.73 0.00 0.00 2.74
4492 4592 1.334384 TAGGCTGCGCTTGGTATGGA 61.334 55.000 9.73 0.00 0.00 3.41
4493 4593 1.526917 GGCTGCGCTTGGTATGGAT 60.527 57.895 9.73 0.00 0.00 3.41
4494 4594 1.650912 GCTGCGCTTGGTATGGATG 59.349 57.895 9.73 0.00 0.00 3.51
4495 4595 1.097547 GCTGCGCTTGGTATGGATGT 61.098 55.000 9.73 0.00 0.00 3.06
4496 4596 1.810031 GCTGCGCTTGGTATGGATGTA 60.810 52.381 9.73 0.00 0.00 2.29
4497 4597 2.560504 CTGCGCTTGGTATGGATGTAA 58.439 47.619 9.73 0.00 0.00 2.41
4498 4598 3.141398 CTGCGCTTGGTATGGATGTAAT 58.859 45.455 9.73 0.00 0.00 1.89
4499 4599 3.550820 TGCGCTTGGTATGGATGTAATT 58.449 40.909 9.73 0.00 0.00 1.40
4500 4600 3.951037 TGCGCTTGGTATGGATGTAATTT 59.049 39.130 9.73 0.00 0.00 1.82
4501 4601 5.126779 TGCGCTTGGTATGGATGTAATTTA 58.873 37.500 9.73 0.00 0.00 1.40
4502 4602 5.590663 TGCGCTTGGTATGGATGTAATTTAA 59.409 36.000 9.73 0.00 0.00 1.52
4503 4603 6.264292 TGCGCTTGGTATGGATGTAATTTAAT 59.736 34.615 9.73 0.00 0.00 1.40
4504 4604 7.445707 TGCGCTTGGTATGGATGTAATTTAATA 59.554 33.333 9.73 0.00 0.00 0.98
4505 4605 7.749126 GCGCTTGGTATGGATGTAATTTAATAC 59.251 37.037 0.00 0.00 0.00 1.89
4506 4606 8.779303 CGCTTGGTATGGATGTAATTTAATACA 58.221 33.333 0.00 0.00 39.91 2.29
4507 4607 9.893305 GCTTGGTATGGATGTAATTTAATACAC 57.107 33.333 0.00 0.00 38.53 2.90
4509 4609 9.616156 TTGGTATGGATGTAATTTAATACACGT 57.384 29.630 0.00 0.00 38.53 4.49
4510 4610 9.047371 TGGTATGGATGTAATTTAATACACGTG 57.953 33.333 15.48 15.48 38.53 4.49
4511 4611 9.048446 GGTATGGATGTAATTTAATACACGTGT 57.952 33.333 26.52 26.52 38.53 4.49
4515 4615 9.819267 TGGATGTAATTTAATACACGTGTATCA 57.181 29.630 34.66 26.57 40.10 2.15
4523 4623 9.710979 ATTTAATACACGTGTATCAAATTTCCG 57.289 29.630 31.15 1.68 36.10 4.30
4524 4624 5.728351 ATACACGTGTATCAAATTTCCGG 57.272 39.130 30.78 0.00 36.57 5.14
4525 4625 2.745281 ACACGTGTATCAAATTTCCGGG 59.255 45.455 21.98 0.00 0.00 5.73
4526 4626 2.745281 CACGTGTATCAAATTTCCGGGT 59.255 45.455 7.58 0.00 0.00 5.28
4527 4627 2.745281 ACGTGTATCAAATTTCCGGGTG 59.255 45.455 0.00 0.00 0.00 4.61
4528 4628 2.745281 CGTGTATCAAATTTCCGGGTGT 59.255 45.455 0.00 0.00 0.00 4.16
4529 4629 3.933955 CGTGTATCAAATTTCCGGGTGTA 59.066 43.478 0.00 0.00 0.00 2.90
4530 4630 4.392445 CGTGTATCAAATTTCCGGGTGTAA 59.608 41.667 0.00 0.00 0.00 2.41
4531 4631 5.065474 CGTGTATCAAATTTCCGGGTGTAAT 59.935 40.000 0.00 0.00 0.00 1.89
4532 4632 6.403855 CGTGTATCAAATTTCCGGGTGTAATT 60.404 38.462 0.00 0.22 0.00 1.40
4533 4633 7.317390 GTGTATCAAATTTCCGGGTGTAATTT 58.683 34.615 0.00 6.64 33.12 1.82
4534 4634 8.460428 GTGTATCAAATTTCCGGGTGTAATTTA 58.540 33.333 0.00 0.70 32.04 1.40
4535 4635 8.460428 TGTATCAAATTTCCGGGTGTAATTTAC 58.540 33.333 0.00 0.00 32.04 2.01
4536 4636 6.896021 TCAAATTTCCGGGTGTAATTTACA 57.104 33.333 0.00 5.14 32.04 2.41
4537 4637 7.469537 TCAAATTTCCGGGTGTAATTTACAT 57.530 32.000 12.16 0.00 41.34 2.29
4538 4638 7.316640 TCAAATTTCCGGGTGTAATTTACATG 58.683 34.615 12.16 6.11 41.34 3.21
4539 4639 4.705337 TTTCCGGGTGTAATTTACATGC 57.295 40.909 12.16 1.20 41.34 4.06
4540 4640 2.645802 TCCGGGTGTAATTTACATGCC 58.354 47.619 12.16 9.51 41.34 4.40
4541 4641 2.026169 TCCGGGTGTAATTTACATGCCA 60.026 45.455 12.16 0.00 41.34 4.92
4542 4642 2.755655 CCGGGTGTAATTTACATGCCAA 59.244 45.455 12.16 0.00 41.34 4.52
4543 4643 3.181491 CCGGGTGTAATTTACATGCCAAG 60.181 47.826 12.16 7.80 41.34 3.61
4544 4644 3.692101 CGGGTGTAATTTACATGCCAAGA 59.308 43.478 12.16 0.00 41.34 3.02
4545 4645 4.201910 CGGGTGTAATTTACATGCCAAGAG 60.202 45.833 12.16 1.03 41.34 2.85
4546 4646 4.705023 GGGTGTAATTTACATGCCAAGAGT 59.295 41.667 12.16 0.00 41.34 3.24
4547 4647 5.185056 GGGTGTAATTTACATGCCAAGAGTT 59.815 40.000 12.16 0.00 41.34 3.01
4548 4648 6.376018 GGGTGTAATTTACATGCCAAGAGTTA 59.624 38.462 12.16 0.00 41.34 2.24
4549 4649 7.068226 GGGTGTAATTTACATGCCAAGAGTTAT 59.932 37.037 12.16 0.00 41.34 1.89
4550 4650 8.466798 GGTGTAATTTACATGCCAAGAGTTATT 58.533 33.333 12.16 0.00 41.34 1.40
4551 4651 9.855021 GTGTAATTTACATGCCAAGAGTTATTT 57.145 29.630 12.16 0.00 41.34 1.40
4555 4655 7.650834 TTTACATGCCAAGAGTTATTTTTGC 57.349 32.000 0.00 0.00 0.00 3.68
4556 4656 4.568956 ACATGCCAAGAGTTATTTTTGCC 58.431 39.130 0.00 0.00 0.00 4.52
4557 4657 4.284234 ACATGCCAAGAGTTATTTTTGCCT 59.716 37.500 0.00 0.00 0.00 4.75
4558 4658 4.255833 TGCCAAGAGTTATTTTTGCCTG 57.744 40.909 0.00 0.00 0.00 4.85
4559 4659 3.006752 TGCCAAGAGTTATTTTTGCCTGG 59.993 43.478 0.00 0.00 0.00 4.45
4560 4660 3.258123 GCCAAGAGTTATTTTTGCCTGGA 59.742 43.478 0.00 0.00 0.00 3.86
4561 4661 4.262420 GCCAAGAGTTATTTTTGCCTGGAA 60.262 41.667 0.00 0.00 0.00 3.53
4562 4662 5.741673 GCCAAGAGTTATTTTTGCCTGGAAA 60.742 40.000 0.00 0.00 0.00 3.13
4563 4663 5.696270 CCAAGAGTTATTTTTGCCTGGAAAC 59.304 40.000 0.00 0.00 0.00 2.78
4564 4664 5.468540 AGAGTTATTTTTGCCTGGAAACC 57.531 39.130 0.00 0.00 0.00 3.27
4565 4665 4.898861 AGAGTTATTTTTGCCTGGAAACCA 59.101 37.500 0.00 0.00 0.00 3.67
4566 4666 5.365314 AGAGTTATTTTTGCCTGGAAACCAA 59.635 36.000 0.00 0.00 30.80 3.67
4567 4667 5.995446 AGTTATTTTTGCCTGGAAACCAAA 58.005 33.333 0.00 0.00 30.80 3.28
4568 4668 6.418946 AGTTATTTTTGCCTGGAAACCAAAA 58.581 32.000 0.00 1.72 36.86 2.44
4569 4669 6.317642 AGTTATTTTTGCCTGGAAACCAAAAC 59.682 34.615 0.00 0.00 37.95 2.43
4570 4670 2.301577 TTTGCCTGGAAACCAAAACG 57.698 45.000 0.00 0.00 30.80 3.60
4571 4671 1.475403 TTGCCTGGAAACCAAAACGA 58.525 45.000 0.00 0.00 30.80 3.85
4572 4672 1.698506 TGCCTGGAAACCAAAACGAT 58.301 45.000 0.00 0.00 30.80 3.73
4573 4673 1.339610 TGCCTGGAAACCAAAACGATG 59.660 47.619 0.00 0.00 30.80 3.84
4574 4674 1.336795 GCCTGGAAACCAAAACGATGG 60.337 52.381 0.00 0.00 46.38 3.51
4575 4675 2.235016 CCTGGAAACCAAAACGATGGA 58.765 47.619 12.38 0.00 43.54 3.41
4576 4676 2.030274 CCTGGAAACCAAAACGATGGAC 60.030 50.000 12.38 4.91 43.54 4.02
4577 4677 2.621055 CTGGAAACCAAAACGATGGACA 59.379 45.455 12.38 6.06 43.54 4.02
4578 4678 2.621055 TGGAAACCAAAACGATGGACAG 59.379 45.455 12.38 0.00 43.54 3.51
4579 4679 2.882137 GGAAACCAAAACGATGGACAGA 59.118 45.455 12.38 0.00 43.54 3.41
4580 4680 3.058224 GGAAACCAAAACGATGGACAGAG 60.058 47.826 12.38 0.00 43.54 3.35
4581 4681 3.485463 AACCAAAACGATGGACAGAGA 57.515 42.857 12.38 0.00 43.54 3.10
4582 4682 3.703001 ACCAAAACGATGGACAGAGAT 57.297 42.857 12.38 0.00 43.54 2.75
4583 4683 3.600388 ACCAAAACGATGGACAGAGATC 58.400 45.455 12.38 0.00 43.54 2.75
4584 4684 3.261897 ACCAAAACGATGGACAGAGATCT 59.738 43.478 12.38 0.00 43.54 2.75
4585 4685 4.860916 ACCAAAACGATGGACAGAGATCTG 60.861 45.833 0.00 8.30 45.13 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
251 253 5.359576 ACAAGTGAGTGGAAGCAAAATTACA 59.640 36.000 0.00 0.00 0.00 2.41
277 279 1.126846 GATGAGCACTGAAAACGACGG 59.873 52.381 0.00 0.00 0.00 4.79
295 303 8.462016 GTGTAGACCAAATTTGAGCAAATAGAT 58.538 33.333 19.86 0.00 39.88 1.98
297 305 7.592938 TGTGTAGACCAAATTTGAGCAAATAG 58.407 34.615 19.86 2.70 39.88 1.73
323 331 2.052782 ACCTGGGAATGCCGATAAAC 57.947 50.000 0.00 0.00 33.83 2.01
327 335 0.625849 AGAAACCTGGGAATGCCGAT 59.374 50.000 0.00 0.00 33.83 4.18
328 336 0.322456 CAGAAACCTGGGAATGCCGA 60.322 55.000 0.00 0.00 33.83 5.54
329 337 0.609131 ACAGAAACCTGGGAATGCCG 60.609 55.000 0.00 0.00 36.01 5.69
340 352 6.702723 GGTACCCATTTTTACAAACAGAAACC 59.297 38.462 0.00 0.00 0.00 3.27
368 380 4.510167 AAGAGTTCATTGGGGTATGAGG 57.490 45.455 0.00 0.00 36.03 3.86
404 455 7.500227 TCTGAACTCTGAAGAATGTTCATTGTT 59.500 33.333 12.77 7.47 44.79 2.83
932 993 4.779733 AGAGGATCGCCGGGGTGT 62.780 66.667 19.13 8.64 42.67 4.16
1170 1231 1.751924 GCGGTGAAGGAGTAGTCATCT 59.248 52.381 0.00 0.00 0.00 2.90
1353 1414 1.503818 TTTCGTCAAGCACCTTCCGC 61.504 55.000 0.00 0.00 0.00 5.54
1614 1675 1.112315 AGAACCCGGCATTTGCACAA 61.112 50.000 4.74 0.00 44.36 3.33
1659 1720 0.593128 GCTGCAACCGAATGAACTGT 59.407 50.000 0.00 0.00 0.00 3.55
1680 1741 2.560105 AGCTGCCTCAGGAACAAAATTC 59.440 45.455 0.00 0.00 31.21 2.17
2039 2100 0.172803 CTGCTTTCCATGCTTCAGCC 59.827 55.000 0.00 0.00 41.18 4.85
2041 2102 1.132643 GAGCTGCTTTCCATGCTTCAG 59.867 52.381 2.53 0.00 35.76 3.02
2391 2452 4.820775 AGTGATCTTCTCCAGGGCTAATA 58.179 43.478 0.00 0.00 0.00 0.98
2709 2770 2.121948 ACTTCTATCCAGCTGCATCCA 58.878 47.619 8.66 0.00 0.00 3.41
2795 2856 2.547855 GCACCAACCATTTCAAGGAACC 60.548 50.000 0.00 0.00 0.00 3.62
3048 3109 3.706600 AACCGCTTAACATCCCTAACA 57.293 42.857 0.00 0.00 0.00 2.41
3120 3181 1.787012 CCATGACAGCAAACAAAGCC 58.213 50.000 0.00 0.00 0.00 4.35
3122 3183 2.223876 ACTGCCATGACAGCAAACAAAG 60.224 45.455 9.17 0.00 41.60 2.77
3127 3189 0.178995 TCCACTGCCATGACAGCAAA 60.179 50.000 9.17 0.00 41.60 3.68
3275 3339 3.246619 GCTGTAAAGTGGACTTCTCTCG 58.753 50.000 0.00 0.00 34.61 4.04
3295 3360 1.014564 CGAACCGAAGAGTTCAGGGC 61.015 60.000 5.38 0.00 45.27 5.19
3333 3399 5.879763 TGGATGTGGATTCAAAAAGAGAGA 58.120 37.500 0.00 0.00 0.00 3.10
3461 3527 6.564709 GGTTAGGACCGTAAACAAAAGATT 57.435 37.500 8.91 0.00 35.91 2.40
3557 3624 6.636850 GTGTCACTTGCTTATTTACAACCAAG 59.363 38.462 0.00 0.00 36.62 3.61
3572 3639 3.005684 TGGATTCAAATGGTGTCACTTGC 59.994 43.478 2.35 0.00 30.96 4.01
3668 3748 5.234329 CACTTGTTTACGAGACACAGATTGT 59.766 40.000 4.16 0.00 43.10 2.71
3669 3749 5.462068 TCACTTGTTTACGAGACACAGATTG 59.538 40.000 4.16 0.00 0.00 2.67
3670 3750 5.462398 GTCACTTGTTTACGAGACACAGATT 59.538 40.000 4.16 0.00 0.00 2.40
3695 3775 2.558359 GGCATAATTAGCACACCCATCC 59.442 50.000 8.51 0.00 0.00 3.51
3712 3792 1.852309 TGACCCCAATATCTGTGGCAT 59.148 47.619 0.00 0.00 34.56 4.40
3764 3844 3.565307 GATTGGTCCAAATAGGCCATGA 58.435 45.455 8.75 0.00 41.29 3.07
3801 3881 7.658167 ACTTAACCAAAGAGAAGAAAGCTACTC 59.342 37.037 0.00 0.00 38.67 2.59
3852 3932 4.593206 CCATTGTCTCAGTTAGGCCCTATA 59.407 45.833 0.00 0.00 0.00 1.31
3857 3937 3.567478 ATCCATTGTCTCAGTTAGGCC 57.433 47.619 0.00 0.00 0.00 5.19
3864 3944 6.416631 TCATCTCCTTATCCATTGTCTCAG 57.583 41.667 0.00 0.00 0.00 3.35
3942 4022 3.947834 GGAAACCCATTCACGATTGATCT 59.052 43.478 0.00 0.00 39.98 2.75
3943 4023 4.292977 GGAAACCCATTCACGATTGATC 57.707 45.455 0.00 0.00 39.98 2.92
3991 4083 4.592942 AGCTCAATGCAGTATCTTTCCAA 58.407 39.130 0.00 0.00 45.94 3.53
4006 4098 3.935203 CGGTGTTCATACTTGAGCTCAAT 59.065 43.478 28.57 19.82 34.45 2.57
4015 4107 4.253685 CTCATTGTCCGGTGTTCATACTT 58.746 43.478 0.00 0.00 0.00 2.24
4016 4108 3.861840 CTCATTGTCCGGTGTTCATACT 58.138 45.455 0.00 0.00 0.00 2.12
4017 4109 2.351726 GCTCATTGTCCGGTGTTCATAC 59.648 50.000 0.00 0.00 0.00 2.39
4018 4110 2.236146 AGCTCATTGTCCGGTGTTCATA 59.764 45.455 0.00 0.00 0.00 2.15
4019 4111 1.003580 AGCTCATTGTCCGGTGTTCAT 59.996 47.619 0.00 0.00 0.00 2.57
4020 4112 0.396435 AGCTCATTGTCCGGTGTTCA 59.604 50.000 0.00 0.00 0.00 3.18
4021 4113 0.798776 CAGCTCATTGTCCGGTGTTC 59.201 55.000 0.00 0.00 0.00 3.18
4024 4116 0.957395 AAGCAGCTCATTGTCCGGTG 60.957 55.000 0.00 0.00 0.00 4.94
4025 4117 0.957395 CAAGCAGCTCATTGTCCGGT 60.957 55.000 0.00 0.00 0.00 5.28
4026 4118 0.957395 ACAAGCAGCTCATTGTCCGG 60.957 55.000 7.16 0.00 34.62 5.14
4027 4119 0.167470 CACAAGCAGCTCATTGTCCG 59.833 55.000 9.58 0.00 37.54 4.79
4028 4120 0.109412 GCACAAGCAGCTCATTGTCC 60.109 55.000 9.58 0.00 37.54 4.02
4041 4133 2.031314 CCGCTGATGAAGTATGCACAAG 59.969 50.000 0.00 0.00 0.00 3.16
4047 4139 1.570813 TTCGCCGCTGATGAAGTATG 58.429 50.000 0.00 0.00 0.00 2.39
4059 4151 1.664151 ACTAAACTAAGCATTCGCCGC 59.336 47.619 0.00 0.00 39.83 6.53
4068 4160 4.568760 GTCAGATCAGGCACTAAACTAAGC 59.431 45.833 0.00 0.00 36.02 3.09
4070 4162 5.738619 TGTCAGATCAGGCACTAAACTAA 57.261 39.130 0.00 0.00 36.02 2.24
4073 4165 4.569966 CAGATGTCAGATCAGGCACTAAAC 59.430 45.833 0.00 0.00 36.02 2.01
4090 4182 4.322499 CGGAGGGTGTAGTAAAACAGATGT 60.322 45.833 0.00 0.00 0.00 3.06
4102 4194 8.636213 TCTTATATTTCTTTACGGAGGGTGTAG 58.364 37.037 0.00 0.00 0.00 2.74
4104 4196 7.427989 TCTTATATTTCTTTACGGAGGGTGT 57.572 36.000 0.00 0.00 0.00 4.16
4106 4198 6.522946 GCTCTTATATTTCTTTACGGAGGGT 58.477 40.000 0.00 0.00 0.00 4.34
4107 4199 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
4108 4200 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
4109 4201 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
4110 4202 9.585099 TTAAACGCTCTTATATTTCTTTACGGA 57.415 29.630 0.00 0.00 0.00 4.69
4127 4219 8.175716 ACAAGAGCATTTAGTATTTAAACGCTC 58.824 33.333 15.77 15.77 46.66 5.03
4128 4220 8.040716 ACAAGAGCATTTAGTATTTAAACGCT 57.959 30.769 0.52 0.52 38.44 5.07
4129 4221 9.931210 ATACAAGAGCATTTAGTATTTAAACGC 57.069 29.630 0.00 0.00 0.00 4.84
4139 4231 8.665685 CCGTAAAGAAATACAAGAGCATTTAGT 58.334 33.333 0.00 0.00 0.00 2.24
4140 4232 8.122952 CCCGTAAAGAAATACAAGAGCATTTAG 58.877 37.037 0.00 0.00 0.00 1.85
4141 4233 7.066525 CCCCGTAAAGAAATACAAGAGCATTTA 59.933 37.037 0.00 0.00 0.00 1.40
4142 4234 6.127730 CCCCGTAAAGAAATACAAGAGCATTT 60.128 38.462 0.00 0.00 0.00 2.32
4143 4235 5.357032 CCCCGTAAAGAAATACAAGAGCATT 59.643 40.000 0.00 0.00 0.00 3.56
4144 4236 4.881850 CCCCGTAAAGAAATACAAGAGCAT 59.118 41.667 0.00 0.00 0.00 3.79
4145 4237 4.020039 TCCCCGTAAAGAAATACAAGAGCA 60.020 41.667 0.00 0.00 0.00 4.26
4146 4238 4.510571 TCCCCGTAAAGAAATACAAGAGC 58.489 43.478 0.00 0.00 0.00 4.09
4147 4239 5.731591 ACTCCCCGTAAAGAAATACAAGAG 58.268 41.667 0.00 0.00 0.00 2.85
4148 4240 5.750352 ACTCCCCGTAAAGAAATACAAGA 57.250 39.130 0.00 0.00 0.00 3.02
4149 4241 8.502105 AAATACTCCCCGTAAAGAAATACAAG 57.498 34.615 0.00 0.00 0.00 3.16
4150 4242 8.323567 AGAAATACTCCCCGTAAAGAAATACAA 58.676 33.333 0.00 0.00 0.00 2.41
4151 4243 7.767198 CAGAAATACTCCCCGTAAAGAAATACA 59.233 37.037 0.00 0.00 0.00 2.29
4152 4244 7.767659 ACAGAAATACTCCCCGTAAAGAAATAC 59.232 37.037 0.00 0.00 0.00 1.89
4153 4245 7.854337 ACAGAAATACTCCCCGTAAAGAAATA 58.146 34.615 0.00 0.00 0.00 1.40
4154 4246 6.718294 ACAGAAATACTCCCCGTAAAGAAAT 58.282 36.000 0.00 0.00 0.00 2.17
4155 4247 6.117975 ACAGAAATACTCCCCGTAAAGAAA 57.882 37.500 0.00 0.00 0.00 2.52
4156 4248 5.750352 ACAGAAATACTCCCCGTAAAGAA 57.250 39.130 0.00 0.00 0.00 2.52
4157 4249 5.622914 CGAACAGAAATACTCCCCGTAAAGA 60.623 44.000 0.00 0.00 0.00 2.52
4158 4250 4.565564 CGAACAGAAATACTCCCCGTAAAG 59.434 45.833 0.00 0.00 0.00 1.85
4159 4251 4.497300 CGAACAGAAATACTCCCCGTAAA 58.503 43.478 0.00 0.00 0.00 2.01
4160 4252 3.676873 GCGAACAGAAATACTCCCCGTAA 60.677 47.826 0.00 0.00 0.00 3.18
4161 4253 2.159198 GCGAACAGAAATACTCCCCGTA 60.159 50.000 0.00 0.00 0.00 4.02
4162 4254 1.405121 GCGAACAGAAATACTCCCCGT 60.405 52.381 0.00 0.00 0.00 5.28
4163 4255 1.287425 GCGAACAGAAATACTCCCCG 58.713 55.000 0.00 0.00 0.00 5.73
4164 4256 1.209747 AGGCGAACAGAAATACTCCCC 59.790 52.381 0.00 0.00 0.00 4.81
4165 4257 2.693267 AGGCGAACAGAAATACTCCC 57.307 50.000 0.00 0.00 0.00 4.30
4166 4258 3.374367 GGAAAGGCGAACAGAAATACTCC 59.626 47.826 0.00 0.00 0.00 3.85
4167 4259 4.000988 TGGAAAGGCGAACAGAAATACTC 58.999 43.478 0.00 0.00 0.00 2.59
4168 4260 4.015872 TGGAAAGGCGAACAGAAATACT 57.984 40.909 0.00 0.00 0.00 2.12
4169 4261 4.759516 TTGGAAAGGCGAACAGAAATAC 57.240 40.909 0.00 0.00 0.00 1.89
4170 4262 5.067273 TCTTTGGAAAGGCGAACAGAAATA 58.933 37.500 0.00 0.00 36.67 1.40
4171 4263 3.888930 TCTTTGGAAAGGCGAACAGAAAT 59.111 39.130 0.00 0.00 36.67 2.17
4172 4264 3.283751 TCTTTGGAAAGGCGAACAGAAA 58.716 40.909 0.00 0.00 36.67 2.52
4173 4265 2.925724 TCTTTGGAAAGGCGAACAGAA 58.074 42.857 0.00 0.00 36.67 3.02
4174 4266 2.631160 TCTTTGGAAAGGCGAACAGA 57.369 45.000 0.00 0.00 36.67 3.41
4175 4267 3.708563 TTTCTTTGGAAAGGCGAACAG 57.291 42.857 0.00 0.00 36.63 3.16
4176 4268 4.664150 ATTTTCTTTGGAAAGGCGAACA 57.336 36.364 0.00 0.00 41.66 3.18
4177 4269 4.921515 GGTATTTTCTTTGGAAAGGCGAAC 59.078 41.667 0.00 0.00 41.66 3.95
4189 4281 1.900245 ACGGCACCGGTATTTTCTTT 58.100 45.000 6.87 0.00 44.69 2.52
4190 4282 1.538075 CAACGGCACCGGTATTTTCTT 59.462 47.619 6.87 0.00 44.69 2.52
4196 4288 0.594110 CAAAACAACGGCACCGGTAT 59.406 50.000 6.87 0.00 44.69 2.73
4207 4299 0.179150 TGCTGGTGCGTCAAAACAAC 60.179 50.000 0.00 0.00 43.34 3.32
4209 4301 1.431440 GTGCTGGTGCGTCAAAACA 59.569 52.632 0.00 0.00 43.34 2.83
4210 4302 1.654137 CGTGCTGGTGCGTCAAAAC 60.654 57.895 0.00 0.00 43.34 2.43
4230 4328 2.507058 AGCATGGCCTCTCTGTTTATCA 59.493 45.455 3.32 0.00 0.00 2.15
4237 4335 0.179062 GGTACAGCATGGCCTCTCTG 60.179 60.000 3.32 10.59 43.62 3.35
4243 4341 0.967380 AGCAAAGGTACAGCATGGCC 60.967 55.000 0.00 0.00 43.62 5.36
4248 4346 1.070134 AGAACGAGCAAAGGTACAGCA 59.930 47.619 0.00 0.00 0.00 4.41
4283 4383 4.657075 TCGAAGTTTACAATCGAAAGGC 57.343 40.909 7.90 0.00 42.07 4.35
4289 4389 6.475207 CATAAGGGTTCGAAGTTTACAATCG 58.525 40.000 0.00 0.00 37.90 3.34
4292 4392 4.456566 GGCATAAGGGTTCGAAGTTTACAA 59.543 41.667 0.00 0.00 0.00 2.41
4293 4393 4.004982 GGCATAAGGGTTCGAAGTTTACA 58.995 43.478 0.00 0.00 0.00 2.41
4306 4406 3.585990 CCAAGCGCGGCATAAGGG 61.586 66.667 8.83 0.00 0.00 3.95
4309 4409 1.771073 CGATTCCAAGCGCGGCATAA 61.771 55.000 8.83 0.00 0.00 1.90
4310 4410 2.243957 CGATTCCAAGCGCGGCATA 61.244 57.895 8.83 0.00 0.00 3.14
4311 4411 3.576356 CGATTCCAAGCGCGGCAT 61.576 61.111 8.83 0.00 0.00 4.40
4315 4415 1.355796 TTACACCGATTCCAAGCGCG 61.356 55.000 0.00 0.00 36.32 6.86
4316 4416 0.800012 TTTACACCGATTCCAAGCGC 59.200 50.000 0.00 0.00 36.32 5.92
4317 4417 4.868450 TTATTTACACCGATTCCAAGCG 57.132 40.909 0.00 0.00 37.59 4.68
4318 4418 7.699566 TGTATTTATTTACACCGATTCCAAGC 58.300 34.615 0.00 0.00 0.00 4.01
4319 4419 9.104965 TCTGTATTTATTTACACCGATTCCAAG 57.895 33.333 0.00 0.00 0.00 3.61
4320 4420 9.621629 ATCTGTATTTATTTACACCGATTCCAA 57.378 29.630 0.00 0.00 0.00 3.53
4321 4421 9.051679 CATCTGTATTTATTTACACCGATTCCA 57.948 33.333 0.00 0.00 0.00 3.53
4322 4422 9.052759 ACATCTGTATTTATTTACACCGATTCC 57.947 33.333 0.00 0.00 0.00 3.01
4338 4438 8.889717 CACCCGTAAGAAAAATACATCTGTATT 58.110 33.333 9.29 9.29 46.10 1.89
4339 4439 8.044908 ACACCCGTAAGAAAAATACATCTGTAT 58.955 33.333 0.00 0.00 40.88 2.29
4340 4440 7.388437 ACACCCGTAAGAAAAATACATCTGTA 58.612 34.615 0.00 0.00 43.02 2.74
4341 4441 6.235664 ACACCCGTAAGAAAAATACATCTGT 58.764 36.000 0.00 0.00 43.02 3.41
4342 4442 6.737254 ACACCCGTAAGAAAAATACATCTG 57.263 37.500 0.00 0.00 43.02 2.90
4343 4443 8.483758 AGATACACCCGTAAGAAAAATACATCT 58.516 33.333 0.00 0.00 43.02 2.90
4344 4444 8.658499 AGATACACCCGTAAGAAAAATACATC 57.342 34.615 0.00 0.00 43.02 3.06
4346 4446 9.369904 GTAAGATACACCCGTAAGAAAAATACA 57.630 33.333 0.00 0.00 43.02 2.29
4347 4447 9.591792 AGTAAGATACACCCGTAAGAAAAATAC 57.408 33.333 0.00 0.00 43.02 1.89
4348 4448 9.590451 CAGTAAGATACACCCGTAAGAAAAATA 57.410 33.333 0.00 0.00 43.02 1.40
4349 4449 7.551617 CCAGTAAGATACACCCGTAAGAAAAAT 59.448 37.037 0.00 0.00 43.02 1.82
4350 4450 6.875195 CCAGTAAGATACACCCGTAAGAAAAA 59.125 38.462 0.00 0.00 43.02 1.94
4351 4451 6.400568 CCAGTAAGATACACCCGTAAGAAAA 58.599 40.000 0.00 0.00 43.02 2.29
4352 4452 5.625197 GCCAGTAAGATACACCCGTAAGAAA 60.625 44.000 0.00 0.00 43.02 2.52
4353 4453 4.142093 GCCAGTAAGATACACCCGTAAGAA 60.142 45.833 0.00 0.00 43.02 2.52
4354 4454 3.382546 GCCAGTAAGATACACCCGTAAGA 59.617 47.826 0.00 0.00 43.02 2.10
4355 4455 3.492137 GGCCAGTAAGATACACCCGTAAG 60.492 52.174 0.00 0.00 0.00 2.34
4356 4456 2.431782 GGCCAGTAAGATACACCCGTAA 59.568 50.000 0.00 0.00 0.00 3.18
4357 4457 2.034124 GGCCAGTAAGATACACCCGTA 58.966 52.381 0.00 0.00 0.00 4.02
4358 4458 0.828677 GGCCAGTAAGATACACCCGT 59.171 55.000 0.00 0.00 0.00 5.28
4359 4459 0.828022 TGGCCAGTAAGATACACCCG 59.172 55.000 0.00 0.00 0.00 5.28
4360 4460 1.141053 CCTGGCCAGTAAGATACACCC 59.859 57.143 30.63 0.00 0.00 4.61
4361 4461 2.103263 CTCCTGGCCAGTAAGATACACC 59.897 54.545 30.63 0.00 0.00 4.16
4362 4462 2.483889 GCTCCTGGCCAGTAAGATACAC 60.484 54.545 30.63 10.76 34.27 2.90
4363 4463 1.762957 GCTCCTGGCCAGTAAGATACA 59.237 52.381 30.63 3.69 34.27 2.29
4364 4464 1.269831 CGCTCCTGGCCAGTAAGATAC 60.270 57.143 30.63 14.37 37.74 2.24
4365 4465 1.040646 CGCTCCTGGCCAGTAAGATA 58.959 55.000 30.63 8.29 37.74 1.98
4366 4466 0.687757 TCGCTCCTGGCCAGTAAGAT 60.688 55.000 30.63 0.00 37.74 2.40
4367 4467 0.687757 ATCGCTCCTGGCCAGTAAGA 60.688 55.000 30.63 22.51 37.74 2.10
4368 4468 0.179000 AATCGCTCCTGGCCAGTAAG 59.821 55.000 30.63 25.91 37.74 2.34
4369 4469 0.618458 AAATCGCTCCTGGCCAGTAA 59.382 50.000 30.63 17.50 37.74 2.24
4370 4470 0.107703 CAAATCGCTCCTGGCCAGTA 60.108 55.000 30.63 15.68 37.74 2.74
4371 4471 1.377725 CAAATCGCTCCTGGCCAGT 60.378 57.895 30.63 8.87 37.74 4.00
4372 4472 2.768492 GCAAATCGCTCCTGGCCAG 61.768 63.158 26.87 26.87 37.77 4.85
4373 4473 2.751436 GCAAATCGCTCCTGGCCA 60.751 61.111 4.71 4.71 37.77 5.36
4374 4474 2.751436 TGCAAATCGCTCCTGGCC 60.751 61.111 0.00 0.00 43.06 5.36
4375 4475 2.486966 GTGCAAATCGCTCCTGGC 59.513 61.111 0.00 0.00 43.06 4.85
4376 4476 2.787249 CGTGCAAATCGCTCCTGG 59.213 61.111 0.00 0.00 43.06 4.45
4383 4483 2.137395 CGTTTCGGCGTGCAAATCG 61.137 57.895 6.85 0.77 0.00 3.34
4384 4484 0.384974 TTCGTTTCGGCGTGCAAATC 60.385 50.000 6.85 0.00 0.00 2.17
4385 4485 0.029567 TTTCGTTTCGGCGTGCAAAT 59.970 45.000 6.85 0.00 0.00 2.32
4386 4486 0.179171 TTTTCGTTTCGGCGTGCAAA 60.179 45.000 6.85 0.00 0.00 3.68
4387 4487 0.862283 GTTTTCGTTTCGGCGTGCAA 60.862 50.000 6.85 0.00 0.00 4.08
4388 4488 1.297745 GTTTTCGTTTCGGCGTGCA 60.298 52.632 6.85 0.00 0.00 4.57
4389 4489 2.344237 CGTTTTCGTTTCGGCGTGC 61.344 57.895 6.85 0.00 38.65 5.34
4390 4490 0.111001 ATCGTTTTCGTTTCGGCGTG 60.111 50.000 6.85 0.00 44.46 5.34
4391 4491 0.111001 CATCGTTTTCGTTTCGGCGT 60.111 50.000 6.85 0.00 44.46 5.68
4392 4492 0.787908 CCATCGTTTTCGTTTCGGCG 60.788 55.000 0.00 0.00 44.46 6.46
4393 4493 1.063412 GCCATCGTTTTCGTTTCGGC 61.063 55.000 0.00 0.00 44.46 5.54
4394 4494 0.453782 GGCCATCGTTTTCGTTTCGG 60.454 55.000 0.00 0.00 44.46 4.30
4395 4495 0.787908 CGGCCATCGTTTTCGTTTCG 60.788 55.000 2.24 0.00 44.46 3.46
4396 4496 0.453782 CCGGCCATCGTTTTCGTTTC 60.454 55.000 2.24 0.00 44.46 2.78
4397 4497 1.167781 ACCGGCCATCGTTTTCGTTT 61.168 50.000 0.00 0.00 44.46 3.60
4398 4498 1.598685 ACCGGCCATCGTTTTCGTT 60.599 52.632 0.00 0.00 44.46 3.85
4399 4499 2.031465 ACCGGCCATCGTTTTCGT 59.969 55.556 0.00 0.00 44.46 3.85
4400 4500 2.478746 CACCGGCCATCGTTTTCG 59.521 61.111 0.00 0.00 45.64 3.46
4401 4501 2.874751 CCACCGGCCATCGTTTTC 59.125 61.111 0.00 0.00 37.11 2.29
4402 4502 3.370231 GCCACCGGCCATCGTTTT 61.370 61.111 0.00 0.00 44.06 2.43
4412 4512 1.808343 GTAAAAGTTACAGGCCACCGG 59.192 52.381 5.01 0.00 0.00 5.28
4413 4513 2.496111 TGTAAAAGTTACAGGCCACCG 58.504 47.619 5.01 0.00 0.00 4.94
4414 4514 3.887110 ACTTGTAAAAGTTACAGGCCACC 59.113 43.478 5.01 0.00 0.00 4.61
4415 4515 4.337274 ACACTTGTAAAAGTTACAGGCCAC 59.663 41.667 5.01 0.00 0.00 5.01
4416 4516 4.528920 ACACTTGTAAAAGTTACAGGCCA 58.471 39.130 5.01 0.00 0.00 5.36
4417 4517 6.812879 ATACACTTGTAAAAGTTACAGGCC 57.187 37.500 9.43 0.00 33.76 5.19
4418 4518 7.867752 TGAATACACTTGTAAAAGTTACAGGC 58.132 34.615 9.43 0.00 33.76 4.85
4429 4529 9.531942 TCGTTTCTACTTTGAATACACTTGTAA 57.468 29.630 0.00 0.00 33.76 2.41
4430 4530 8.971321 GTCGTTTCTACTTTGAATACACTTGTA 58.029 33.333 0.00 0.00 34.67 2.41
4431 4531 7.493320 TGTCGTTTCTACTTTGAATACACTTGT 59.507 33.333 0.00 0.00 0.00 3.16
4432 4532 7.847487 TGTCGTTTCTACTTTGAATACACTTG 58.153 34.615 0.00 0.00 0.00 3.16
4433 4533 8.603242 ATGTCGTTTCTACTTTGAATACACTT 57.397 30.769 0.00 0.00 0.00 3.16
4434 4534 8.603242 AATGTCGTTTCTACTTTGAATACACT 57.397 30.769 0.00 0.00 0.00 3.55
4435 4535 7.955864 GGAATGTCGTTTCTACTTTGAATACAC 59.044 37.037 0.00 0.00 0.00 2.90
4436 4536 7.658167 TGGAATGTCGTTTCTACTTTGAATACA 59.342 33.333 0.00 0.00 0.00 2.29
4437 4537 8.025243 TGGAATGTCGTTTCTACTTTGAATAC 57.975 34.615 0.00 0.00 0.00 1.89
4438 4538 8.610248 TTGGAATGTCGTTTCTACTTTGAATA 57.390 30.769 0.00 0.00 0.00 1.75
4439 4539 7.504924 TTGGAATGTCGTTTCTACTTTGAAT 57.495 32.000 0.00 0.00 0.00 2.57
4440 4540 6.928979 TTGGAATGTCGTTTCTACTTTGAA 57.071 33.333 0.00 0.00 0.00 2.69
4441 4541 6.316640 TGTTTGGAATGTCGTTTCTACTTTGA 59.683 34.615 0.00 0.00 0.00 2.69
4442 4542 6.491394 TGTTTGGAATGTCGTTTCTACTTTG 58.509 36.000 0.00 0.00 0.00 2.77
4443 4543 6.238648 CCTGTTTGGAATGTCGTTTCTACTTT 60.239 38.462 0.00 0.00 38.35 2.66
4444 4544 5.238650 CCTGTTTGGAATGTCGTTTCTACTT 59.761 40.000 0.00 0.00 38.35 2.24
4445 4545 4.755123 CCTGTTTGGAATGTCGTTTCTACT 59.245 41.667 0.00 0.00 38.35 2.57
4446 4546 4.083484 CCCTGTTTGGAATGTCGTTTCTAC 60.083 45.833 0.00 0.00 38.35 2.59
4447 4547 4.069304 CCCTGTTTGGAATGTCGTTTCTA 58.931 43.478 0.00 0.00 38.35 2.10
4448 4548 2.884639 CCCTGTTTGGAATGTCGTTTCT 59.115 45.455 0.00 0.00 38.35 2.52
4449 4549 2.607038 GCCCTGTTTGGAATGTCGTTTC 60.607 50.000 0.00 0.00 38.35 2.78
4450 4550 1.339929 GCCCTGTTTGGAATGTCGTTT 59.660 47.619 0.00 0.00 38.35 3.60
4451 4551 0.958822 GCCCTGTTTGGAATGTCGTT 59.041 50.000 0.00 0.00 38.35 3.85
4452 4552 0.893727 GGCCCTGTTTGGAATGTCGT 60.894 55.000 0.00 0.00 38.35 4.34
4453 4553 0.609131 AGGCCCTGTTTGGAATGTCG 60.609 55.000 0.00 0.00 38.35 4.35
4454 4554 1.632589 AAGGCCCTGTTTGGAATGTC 58.367 50.000 0.00 0.00 38.35 3.06
4455 4555 2.557452 CCTAAGGCCCTGTTTGGAATGT 60.557 50.000 0.00 0.00 38.35 2.71
4456 4556 2.102578 CCTAAGGCCCTGTTTGGAATG 58.897 52.381 0.00 0.00 38.35 2.67
4457 4557 1.619704 GCCTAAGGCCCTGTTTGGAAT 60.620 52.381 0.00 0.00 44.06 3.01
4458 4558 0.251608 GCCTAAGGCCCTGTTTGGAA 60.252 55.000 0.00 0.00 44.06 3.53
4459 4559 1.382629 GCCTAAGGCCCTGTTTGGA 59.617 57.895 0.00 0.00 44.06 3.53
4460 4560 4.018409 GCCTAAGGCCCTGTTTGG 57.982 61.111 0.00 0.00 44.06 3.28
4477 4577 2.238942 TACATCCATACCAAGCGCAG 57.761 50.000 11.47 0.38 0.00 5.18
4478 4578 2.700722 TTACATCCATACCAAGCGCA 57.299 45.000 11.47 0.00 0.00 6.09
4479 4579 4.568152 AAATTACATCCATACCAAGCGC 57.432 40.909 0.00 0.00 0.00 5.92
4480 4580 8.779303 TGTATTAAATTACATCCATACCAAGCG 58.221 33.333 0.00 0.00 0.00 4.68
4481 4581 9.893305 GTGTATTAAATTACATCCATACCAAGC 57.107 33.333 0.00 0.00 34.76 4.01
4483 4583 9.616156 ACGTGTATTAAATTACATCCATACCAA 57.384 29.630 0.00 0.00 34.76 3.67
4484 4584 9.047371 CACGTGTATTAAATTACATCCATACCA 57.953 33.333 7.58 0.00 34.76 3.25
4485 4585 9.048446 ACACGTGTATTAAATTACATCCATACC 57.952 33.333 21.98 0.00 34.76 2.73
4489 4589 9.819267 TGATACACGTGTATTAAATTACATCCA 57.181 29.630 34.92 22.60 40.99 3.41
4498 4598 8.176365 CCGGAAATTTGATACACGTGTATTAAA 58.824 33.333 38.53 38.53 44.74 1.52
4499 4599 7.201626 CCCGGAAATTTGATACACGTGTATTAA 60.202 37.037 34.92 32.78 40.99 1.40
4500 4600 6.258287 CCCGGAAATTTGATACACGTGTATTA 59.742 38.462 34.92 29.75 40.99 0.98
4501 4601 5.065474 CCCGGAAATTTGATACACGTGTATT 59.935 40.000 34.92 22.41 40.99 1.89
4502 4602 4.573201 CCCGGAAATTTGATACACGTGTAT 59.427 41.667 35.10 35.10 43.38 2.29
4503 4603 3.933955 CCCGGAAATTTGATACACGTGTA 59.066 43.478 29.15 29.15 34.67 2.90
4504 4604 2.745281 CCCGGAAATTTGATACACGTGT 59.255 45.455 26.52 26.52 0.00 4.49
4505 4605 2.745281 ACCCGGAAATTTGATACACGTG 59.255 45.455 15.48 15.48 0.00 4.49
4506 4606 2.745281 CACCCGGAAATTTGATACACGT 59.255 45.455 0.73 0.00 0.00 4.49
4507 4607 2.745281 ACACCCGGAAATTTGATACACG 59.255 45.455 0.73 0.00 0.00 4.49
4508 4608 5.883503 TTACACCCGGAAATTTGATACAC 57.116 39.130 0.73 0.00 0.00 2.90
4509 4609 7.469537 AAATTACACCCGGAAATTTGATACA 57.530 32.000 0.73 0.00 32.93 2.29
4510 4610 8.460428 TGTAAATTACACCCGGAAATTTGATAC 58.540 33.333 18.76 13.03 35.20 2.24
4511 4611 8.577048 TGTAAATTACACCCGGAAATTTGATA 57.423 30.769 18.76 8.53 35.20 2.15
4512 4612 7.469537 TGTAAATTACACCCGGAAATTTGAT 57.530 32.000 18.76 4.44 35.20 2.57
4513 4613 6.896021 TGTAAATTACACCCGGAAATTTGA 57.104 33.333 18.76 8.84 35.20 2.69
4514 4614 6.035542 GCATGTAAATTACACCCGGAAATTTG 59.964 38.462 8.12 0.38 42.23 2.32
4515 4615 6.103330 GCATGTAAATTACACCCGGAAATTT 58.897 36.000 8.12 11.84 42.23 1.82
4516 4616 5.394773 GGCATGTAAATTACACCCGGAAATT 60.395 40.000 8.12 0.29 42.23 1.82
4517 4617 4.098807 GGCATGTAAATTACACCCGGAAAT 59.901 41.667 8.12 0.00 42.23 2.17
4518 4618 3.444388 GGCATGTAAATTACACCCGGAAA 59.556 43.478 8.12 0.00 42.23 3.13
4519 4619 3.018149 GGCATGTAAATTACACCCGGAA 58.982 45.455 8.12 0.00 42.23 4.30
4520 4620 2.026169 TGGCATGTAAATTACACCCGGA 60.026 45.455 8.12 0.00 42.23 5.14
4521 4621 2.370349 TGGCATGTAAATTACACCCGG 58.630 47.619 8.12 0.00 42.23 5.73
4522 4622 3.692101 TCTTGGCATGTAAATTACACCCG 59.308 43.478 8.12 1.75 42.23 5.28
4523 4623 4.705023 ACTCTTGGCATGTAAATTACACCC 59.295 41.667 8.12 11.89 42.23 4.61
4524 4624 5.897377 ACTCTTGGCATGTAAATTACACC 57.103 39.130 8.12 6.89 42.23 4.16
4525 4625 9.855021 AAATAACTCTTGGCATGTAAATTACAC 57.145 29.630 8.12 0.00 42.23 2.90
4529 4629 8.720562 GCAAAAATAACTCTTGGCATGTAAATT 58.279 29.630 0.00 0.00 0.00 1.82
4530 4630 7.334171 GGCAAAAATAACTCTTGGCATGTAAAT 59.666 33.333 0.00 0.00 43.16 1.40
4531 4631 6.648725 GGCAAAAATAACTCTTGGCATGTAAA 59.351 34.615 0.00 0.00 43.16 2.01
4532 4632 6.014669 AGGCAAAAATAACTCTTGGCATGTAA 60.015 34.615 9.78 0.00 45.34 2.41
4533 4633 5.480073 AGGCAAAAATAACTCTTGGCATGTA 59.520 36.000 9.78 0.00 45.34 2.29
4534 4634 4.284234 AGGCAAAAATAACTCTTGGCATGT 59.716 37.500 9.78 0.00 45.34 3.21
4535 4635 4.628333 CAGGCAAAAATAACTCTTGGCATG 59.372 41.667 9.78 0.00 45.34 4.06
4536 4636 4.322953 CCAGGCAAAAATAACTCTTGGCAT 60.323 41.667 9.78 0.00 45.34 4.40
4537 4637 3.006752 CCAGGCAAAAATAACTCTTGGCA 59.993 43.478 9.78 0.00 45.34 4.92
4538 4638 3.258123 TCCAGGCAAAAATAACTCTTGGC 59.742 43.478 0.00 0.00 43.78 4.52
4539 4639 5.467035 TTCCAGGCAAAAATAACTCTTGG 57.533 39.130 0.00 0.00 0.00 3.61
4540 4640 5.696270 GGTTTCCAGGCAAAAATAACTCTTG 59.304 40.000 0.00 0.00 0.00 3.02
4541 4641 5.365314 TGGTTTCCAGGCAAAAATAACTCTT 59.635 36.000 0.00 0.00 0.00 2.85
4542 4642 4.898861 TGGTTTCCAGGCAAAAATAACTCT 59.101 37.500 0.00 0.00 0.00 3.24
4543 4643 5.208463 TGGTTTCCAGGCAAAAATAACTC 57.792 39.130 0.00 0.00 0.00 3.01
4544 4644 5.622346 TTGGTTTCCAGGCAAAAATAACT 57.378 34.783 0.00 0.00 33.81 2.24
4545 4645 6.491394 GTTTTGGTTTCCAGGCAAAAATAAC 58.509 36.000 4.73 0.00 33.81 1.89
4546 4646 5.294552 CGTTTTGGTTTCCAGGCAAAAATAA 59.705 36.000 4.73 0.00 33.81 1.40
4547 4647 4.811557 CGTTTTGGTTTCCAGGCAAAAATA 59.188 37.500 4.73 0.00 33.81 1.40
4548 4648 3.625313 CGTTTTGGTTTCCAGGCAAAAAT 59.375 39.130 4.73 0.00 33.81 1.82
4549 4649 3.003480 CGTTTTGGTTTCCAGGCAAAAA 58.997 40.909 4.73 0.00 33.81 1.94
4550 4650 2.233922 TCGTTTTGGTTTCCAGGCAAAA 59.766 40.909 0.00 0.00 33.81 2.44
4551 4651 1.825474 TCGTTTTGGTTTCCAGGCAAA 59.175 42.857 0.00 0.00 33.81 3.68
4552 4652 1.475403 TCGTTTTGGTTTCCAGGCAA 58.525 45.000 0.00 0.00 33.81 4.52
4553 4653 1.339610 CATCGTTTTGGTTTCCAGGCA 59.660 47.619 0.00 0.00 33.81 4.75
4554 4654 1.336795 CCATCGTTTTGGTTTCCAGGC 60.337 52.381 0.00 0.00 33.81 4.85
4555 4655 2.030274 GTCCATCGTTTTGGTTTCCAGG 60.030 50.000 2.60 0.00 38.01 4.45
4556 4656 2.621055 TGTCCATCGTTTTGGTTTCCAG 59.379 45.455 2.60 0.00 38.01 3.86
4557 4657 2.621055 CTGTCCATCGTTTTGGTTTCCA 59.379 45.455 2.60 0.00 38.01 3.53
4558 4658 2.882137 TCTGTCCATCGTTTTGGTTTCC 59.118 45.455 2.60 0.00 38.01 3.13
4559 4659 3.813166 TCTCTGTCCATCGTTTTGGTTTC 59.187 43.478 2.60 0.00 38.01 2.78
4560 4660 3.815809 TCTCTGTCCATCGTTTTGGTTT 58.184 40.909 2.60 0.00 38.01 3.27
4561 4661 3.485463 TCTCTGTCCATCGTTTTGGTT 57.515 42.857 2.60 0.00 38.01 3.67
4562 4662 3.261897 AGATCTCTGTCCATCGTTTTGGT 59.738 43.478 0.00 0.00 38.01 3.67
4563 4663 3.620374 CAGATCTCTGTCCATCGTTTTGG 59.380 47.826 0.00 0.00 39.09 3.28
4564 4664 4.854361 CAGATCTCTGTCCATCGTTTTG 57.146 45.455 0.00 0.00 39.09 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.