Multiple sequence alignment - TraesCS2B01G213100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G213100 chr2B 100.000 2270 0 0 1 2270 197702932 197700663 0.000000e+00 4193
1 TraesCS2B01G213100 chr1A 96.502 1887 65 1 384 2270 521913205 521911320 0.000000e+00 3118
2 TraesCS2B01G213100 chr1A 78.201 289 61 2 1952 2239 316897453 316897740 1.380000e-42 183
3 TraesCS2B01G213100 chr3B 91.611 2110 169 5 162 2269 718859106 718857003 0.000000e+00 2909
4 TraesCS2B01G213100 chr7A 93.202 1883 128 0 388 2270 77092787 77090905 0.000000e+00 2769
5 TraesCS2B01G213100 chr4A 92.436 780 58 1 1491 2270 742296769 742295991 0.000000e+00 1112
6 TraesCS2B01G213100 chrUn 90.824 534 49 0 388 921 349330803 349330270 0.000000e+00 715
7 TraesCS2B01G213100 chr1B 98.883 358 4 0 1913 2270 670967752 670968109 6.840000e-180 640
8 TraesCS2B01G213100 chr7B 87.926 323 38 1 367 689 382621979 382622300 1.650000e-101 379
9 TraesCS2B01G213100 chr7B 74.742 388 93 5 1846 2231 113064739 113065123 3.880000e-38 169
10 TraesCS2B01G213100 chr7D 73.184 757 178 21 1526 2270 580110920 580110177 1.350000e-62 250
11 TraesCS2B01G213100 chr4B 75.515 388 90 5 1846 2231 402969089 402969473 3.850000e-43 185
12 TraesCS2B01G213100 chr5B 74.026 385 87 12 1850 2231 507648741 507648367 6.530000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G213100 chr2B 197700663 197702932 2269 True 4193 4193 100.000 1 2270 1 chr2B.!!$R1 2269
1 TraesCS2B01G213100 chr1A 521911320 521913205 1885 True 3118 3118 96.502 384 2270 1 chr1A.!!$R1 1886
2 TraesCS2B01G213100 chr3B 718857003 718859106 2103 True 2909 2909 91.611 162 2269 1 chr3B.!!$R1 2107
3 TraesCS2B01G213100 chr7A 77090905 77092787 1882 True 2769 2769 93.202 388 2270 1 chr7A.!!$R1 1882
4 TraesCS2B01G213100 chr4A 742295991 742296769 778 True 1112 1112 92.436 1491 2270 1 chr4A.!!$R1 779
5 TraesCS2B01G213100 chrUn 349330270 349330803 533 True 715 715 90.824 388 921 1 chrUn.!!$R1 533
6 TraesCS2B01G213100 chr7D 580110177 580110920 743 True 250 250 73.184 1526 2270 1 chr7D.!!$R1 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 290 0.673644 GCCGCCTAGTTCTTCTGCAA 60.674 55.0 0.0 0.0 0.0 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 1801 1.135575 GGCAGAGAGGAAAAATGCACG 60.136 52.381 0.0 0.0 38.63 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.187058 CTTCAATTCCCGGCCACG 58.813 61.111 2.24 0.00 40.55 4.94
18 19 3.051392 CTTCAATTCCCGGCCACGC 62.051 63.158 2.24 0.00 39.22 5.34
19 20 3.561120 TTCAATTCCCGGCCACGCT 62.561 57.895 2.24 0.00 39.22 5.07
20 21 3.508840 CAATTCCCGGCCACGCTC 61.509 66.667 2.24 0.00 39.22 5.03
21 22 4.796495 AATTCCCGGCCACGCTCC 62.796 66.667 2.24 0.00 39.22 4.70
29 30 4.785453 GCCACGCTCCCCCTCAAG 62.785 72.222 0.00 0.00 0.00 3.02
30 31 4.785453 CCACGCTCCCCCTCAAGC 62.785 72.222 0.00 0.00 35.13 4.01
31 32 4.785453 CACGCTCCCCCTCAAGCC 62.785 72.222 0.00 0.00 35.00 4.35
54 55 4.787280 CTCCCCACGCCTCCCTCT 62.787 72.222 0.00 0.00 0.00 3.69
55 56 4.779733 TCCCCACGCCTCCCTCTC 62.780 72.222 0.00 0.00 0.00 3.20
78 79 4.767255 GTGGCCAGCACCGAGGAG 62.767 72.222 5.11 0.00 0.00 3.69
87 88 2.928396 ACCGAGGAGGGGTGGTTG 60.928 66.667 0.00 0.00 46.96 3.77
88 89 4.410400 CCGAGGAGGGGTGGTTGC 62.410 72.222 0.00 0.00 35.97 4.17
89 90 4.410400 CGAGGAGGGGTGGTTGCC 62.410 72.222 0.00 0.00 0.00 4.52
90 91 3.256960 GAGGAGGGGTGGTTGCCA 61.257 66.667 0.00 0.00 0.00 4.92
91 92 3.260100 AGGAGGGGTGGTTGCCAG 61.260 66.667 0.00 0.00 32.34 4.85
92 93 3.580319 GGAGGGGTGGTTGCCAGT 61.580 66.667 0.00 0.00 32.34 4.00
93 94 2.282462 GAGGGGTGGTTGCCAGTG 60.282 66.667 0.00 0.00 32.34 3.66
94 95 4.603535 AGGGGTGGTTGCCAGTGC 62.604 66.667 0.00 0.00 32.34 4.40
105 106 2.813908 CCAGTGCGGCCGAAGTAC 60.814 66.667 33.48 20.74 0.00 2.73
106 107 2.261671 CAGTGCGGCCGAAGTACT 59.738 61.111 33.48 22.68 34.95 2.73
107 108 2.094659 CAGTGCGGCCGAAGTACTG 61.095 63.158 33.48 28.75 43.58 2.74
108 109 2.813908 GTGCGGCCGAAGTACTGG 60.814 66.667 33.48 0.00 0.00 4.00
109 110 3.307906 TGCGGCCGAAGTACTGGT 61.308 61.111 33.48 0.00 0.00 4.00
110 111 2.813908 GCGGCCGAAGTACTGGTG 60.814 66.667 33.48 0.00 0.00 4.17
111 112 2.125673 CGGCCGAAGTACTGGTGG 60.126 66.667 24.07 0.00 0.00 4.61
112 113 2.642254 CGGCCGAAGTACTGGTGGA 61.642 63.158 24.07 0.00 0.00 4.02
113 114 1.218316 GGCCGAAGTACTGGTGGAG 59.782 63.158 11.41 0.00 0.00 3.86
114 115 1.218316 GCCGAAGTACTGGTGGAGG 59.782 63.158 11.41 4.00 0.00 4.30
115 116 1.898154 CCGAAGTACTGGTGGAGGG 59.102 63.158 0.00 0.00 0.00 4.30
116 117 1.218316 CGAAGTACTGGTGGAGGGC 59.782 63.158 0.00 0.00 0.00 5.19
117 118 1.602771 GAAGTACTGGTGGAGGGCC 59.397 63.158 0.00 0.00 0.00 5.80
118 119 1.911702 GAAGTACTGGTGGAGGGCCC 61.912 65.000 16.46 16.46 0.00 5.80
119 120 2.609610 GTACTGGTGGAGGGCCCA 60.610 66.667 27.56 0.00 44.25 5.36
131 132 4.189580 GGCCCAATCCCGCAGCTA 62.190 66.667 0.00 0.00 0.00 3.32
132 133 2.902343 GCCCAATCCCGCAGCTAC 60.902 66.667 0.00 0.00 0.00 3.58
133 134 2.203209 CCCAATCCCGCAGCTACC 60.203 66.667 0.00 0.00 0.00 3.18
134 135 2.588877 CCAATCCCGCAGCTACCG 60.589 66.667 0.00 0.00 0.00 4.02
135 136 2.588877 CAATCCCGCAGCTACCGG 60.589 66.667 15.92 15.92 45.17 5.28
136 137 4.547367 AATCCCGCAGCTACCGGC 62.547 66.667 17.10 1.68 44.27 6.13
151 152 3.579685 GGCTTTCAAGACGGAGCC 58.420 61.111 0.00 0.00 46.81 4.70
152 153 2.391389 GGCTTTCAAGACGGAGCCG 61.391 63.158 7.48 7.48 44.49 5.52
171 172 0.878961 GTTGGAGCGGTCTTCGTTGT 60.879 55.000 15.18 0.00 41.72 3.32
181 182 2.456989 GTCTTCGTTGTCGTCAGTTCA 58.543 47.619 0.00 0.00 38.33 3.18
211 212 1.005215 CAAGATCCTGCTTCAACCCCT 59.995 52.381 0.00 0.00 0.00 4.79
226 227 1.966451 CCCTTGAAGACGCCACCAC 60.966 63.158 0.00 0.00 0.00 4.16
239 240 2.363925 ACCACCGCCTCCTCCTAC 60.364 66.667 0.00 0.00 0.00 3.18
241 242 4.208686 CACCGCCTCCTCCTACGC 62.209 72.222 0.00 0.00 0.00 4.42
245 246 4.874977 GCCTCCTCCTACGCGTGC 62.875 72.222 24.59 10.40 0.00 5.34
289 290 0.673644 GCCGCCTAGTTCTTCTGCAA 60.674 55.000 0.00 0.00 0.00 4.08
305 306 4.137872 AACATGCATGCGCCCTGC 62.138 61.111 26.53 21.32 46.70 4.85
307 308 2.903350 CATGCATGCGCCCTGCTA 60.903 61.111 26.11 16.14 46.63 3.49
327 328 3.204827 CCAATTCCCCGCTCGCAG 61.205 66.667 0.00 0.00 0.00 5.18
343 344 4.990910 AGGCAGCCACTGGGAGGT 62.991 66.667 15.80 0.00 35.59 3.85
347 348 3.971702 AGCCACTGGGAGGTTGGC 61.972 66.667 3.55 3.55 45.30 4.52
352 353 4.760047 CTGGGAGGTTGGCCGACG 62.760 72.222 17.21 0.00 40.50 5.12
377 378 2.757124 CCGGCCCTATCCCTGCTTT 61.757 63.158 0.00 0.00 0.00 3.51
466 467 0.770166 TGTCACCCTGGATTCCCACA 60.770 55.000 0.00 0.00 37.58 4.17
625 626 4.435970 CCATGGGCTGGCTCTGCA 62.436 66.667 2.85 0.00 38.47 4.41
869 870 2.556287 GCTCTTTGTTGCCCGTCG 59.444 61.111 0.00 0.00 0.00 5.12
887 888 4.394712 GCCACCGCTGCTACCTGT 62.395 66.667 0.00 0.00 0.00 4.00
999 1000 4.432712 GCCTTCAAGCAAAGAACAGAAAA 58.567 39.130 0.00 0.00 0.00 2.29
1061 1062 3.126514 CGCATGGGAATCATAGATGAAGC 59.873 47.826 3.11 0.00 40.69 3.86
1101 1102 2.336554 CCATTGGCAAGTTCGTTGAG 57.663 50.000 5.96 0.00 38.60 3.02
1181 1182 0.317479 GACTGTGACCTTGCTACGGT 59.683 55.000 0.00 0.00 36.68 4.83
1203 1204 3.405831 TGTTGAAGATGCTCTGTTGGAG 58.594 45.455 0.00 0.00 44.49 3.86
1251 1252 2.125106 GCAACGGCCGAGGAGATT 60.125 61.111 35.90 12.08 0.00 2.40
1332 1333 6.069905 TCCATGTTAGCTACAACCCTGAAATA 60.070 38.462 0.00 0.00 40.89 1.40
1416 1417 2.094675 GCCCTTAGATGTGTGTTGCAT 58.905 47.619 0.00 0.00 0.00 3.96
1437 1438 0.108396 TGTTGCTGGCTGTTGAGCTA 59.892 50.000 0.00 0.00 45.44 3.32
1447 1448 3.305608 GGCTGTTGAGCTATGCTTTGTTT 60.306 43.478 0.00 0.00 45.44 2.83
1455 1457 5.927689 TGAGCTATGCTTTGTTTCATTTTGG 59.072 36.000 0.00 0.00 39.88 3.28
1798 1801 1.676014 CCGTCCAGAATGTGTCCTTCC 60.676 57.143 0.00 0.00 0.00 3.46
1877 1880 0.968901 ACATCTGTCTACGGCCCGAA 60.969 55.000 11.71 0.00 0.00 4.30
2049 2052 3.736100 CGCAACGCCCTCAATGCA 61.736 61.111 0.00 0.00 38.69 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.051392 GCGTGGCCGGGAATTGAAG 62.051 63.158 2.18 0.00 33.68 3.02
1 2 3.059386 GCGTGGCCGGGAATTGAA 61.059 61.111 2.18 0.00 33.68 2.69
2 3 3.969250 GAGCGTGGCCGGGAATTGA 62.969 63.158 2.18 0.00 33.68 2.57
3 4 3.508840 GAGCGTGGCCGGGAATTG 61.509 66.667 2.18 0.00 33.68 2.32
4 5 4.796495 GGAGCGTGGCCGGGAATT 62.796 66.667 2.18 0.00 33.68 2.17
12 13 4.785453 CTTGAGGGGGAGCGTGGC 62.785 72.222 0.00 0.00 0.00 5.01
13 14 4.785453 GCTTGAGGGGGAGCGTGG 62.785 72.222 0.00 0.00 0.00 4.94
14 15 4.785453 GGCTTGAGGGGGAGCGTG 62.785 72.222 0.00 0.00 39.78 5.34
37 38 4.787280 AGAGGGAGGCGTGGGGAG 62.787 72.222 0.00 0.00 0.00 4.30
38 39 4.779733 GAGAGGGAGGCGTGGGGA 62.780 72.222 0.00 0.00 0.00 4.81
61 62 4.767255 CTCCTCGGTGCTGGCCAC 62.767 72.222 0.00 0.00 43.90 5.01
66 67 4.087892 CACCCCTCCTCGGTGCTG 62.088 72.222 0.00 0.00 44.10 4.41
70 71 2.928396 CAACCACCCCTCCTCGGT 60.928 66.667 0.00 0.00 0.00 4.69
71 72 4.410400 GCAACCACCCCTCCTCGG 62.410 72.222 0.00 0.00 0.00 4.63
72 73 4.410400 GGCAACCACCCCTCCTCG 62.410 72.222 0.00 0.00 0.00 4.63
73 74 3.256960 TGGCAACCACCCCTCCTC 61.257 66.667 0.00 0.00 0.00 3.71
74 75 3.260100 CTGGCAACCACCCCTCCT 61.260 66.667 0.00 0.00 0.00 3.69
75 76 3.580319 ACTGGCAACCACCCCTCC 61.580 66.667 0.00 0.00 0.00 4.30
76 77 2.282462 CACTGGCAACCACCCCTC 60.282 66.667 0.00 0.00 0.00 4.30
77 78 4.603535 GCACTGGCAACCACCCCT 62.604 66.667 0.00 0.00 40.72 4.79
88 89 2.813908 GTACTTCGGCCGCACTGG 60.814 66.667 23.51 10.54 42.50 4.00
89 90 2.094659 CAGTACTTCGGCCGCACTG 61.095 63.158 23.51 24.10 0.00 3.66
90 91 2.261671 CAGTACTTCGGCCGCACT 59.738 61.111 23.51 17.31 0.00 4.40
91 92 2.813908 CCAGTACTTCGGCCGCAC 60.814 66.667 23.51 15.22 0.00 5.34
92 93 3.307906 ACCAGTACTTCGGCCGCA 61.308 61.111 23.51 9.50 0.00 5.69
93 94 2.813908 CACCAGTACTTCGGCCGC 60.814 66.667 23.51 5.81 0.00 6.53
94 95 2.125673 CCACCAGTACTTCGGCCG 60.126 66.667 22.12 22.12 0.00 6.13
95 96 1.218316 CTCCACCAGTACTTCGGCC 59.782 63.158 0.00 0.00 0.00 6.13
96 97 1.218316 CCTCCACCAGTACTTCGGC 59.782 63.158 0.00 0.00 0.00 5.54
97 98 1.898154 CCCTCCACCAGTACTTCGG 59.102 63.158 0.00 0.00 0.00 4.30
98 99 1.218316 GCCCTCCACCAGTACTTCG 59.782 63.158 0.00 0.00 0.00 3.79
99 100 1.602771 GGCCCTCCACCAGTACTTC 59.397 63.158 0.00 0.00 0.00 3.01
100 101 1.923909 GGGCCCTCCACCAGTACTT 60.924 63.158 17.04 0.00 35.00 2.24
101 102 2.285442 GGGCCCTCCACCAGTACT 60.285 66.667 17.04 0.00 35.00 2.73
102 103 2.609610 TGGGCCCTCCACCAGTAC 60.610 66.667 25.70 0.00 41.46 2.73
111 112 4.883354 CTGCGGGATTGGGCCCTC 62.883 72.222 25.70 13.53 46.44 4.30
114 115 4.189580 TAGCTGCGGGATTGGGCC 62.190 66.667 0.00 0.00 0.00 5.80
115 116 2.902343 GTAGCTGCGGGATTGGGC 60.902 66.667 0.00 0.00 0.00 5.36
116 117 2.203209 GGTAGCTGCGGGATTGGG 60.203 66.667 0.00 0.00 0.00 4.12
117 118 2.588877 CGGTAGCTGCGGGATTGG 60.589 66.667 0.00 0.00 0.00 3.16
118 119 2.588877 CCGGTAGCTGCGGGATTG 60.589 66.667 21.61 0.00 0.00 2.67
119 120 4.547367 GCCGGTAGCTGCGGGATT 62.547 66.667 28.58 0.00 38.99 3.01
128 129 1.359459 CCGTCTTGAAAGCCGGTAGC 61.359 60.000 1.90 0.00 42.20 3.58
129 130 0.245539 TCCGTCTTGAAAGCCGGTAG 59.754 55.000 11.82 0.00 46.75 3.18
130 131 0.245539 CTCCGTCTTGAAAGCCGGTA 59.754 55.000 11.82 0.00 46.75 4.02
131 132 1.004918 CTCCGTCTTGAAAGCCGGT 60.005 57.895 11.82 0.00 46.75 5.28
133 134 2.391389 GGCTCCGTCTTGAAAGCCG 61.391 63.158 0.00 0.00 44.37 5.52
134 135 3.579685 GGCTCCGTCTTGAAAGCC 58.420 61.111 0.00 0.00 46.76 4.35
135 136 3.169198 CGGCTCCGTCTTGAAAGC 58.831 61.111 0.00 0.00 34.35 3.51
151 152 1.663702 AACGAAGACCGCTCCAACG 60.664 57.895 0.00 0.00 43.32 4.10
152 153 0.878961 ACAACGAAGACCGCTCCAAC 60.879 55.000 0.00 0.00 43.32 3.77
153 154 0.599204 GACAACGAAGACCGCTCCAA 60.599 55.000 0.00 0.00 43.32 3.53
154 155 1.006571 GACAACGAAGACCGCTCCA 60.007 57.895 0.00 0.00 43.32 3.86
155 156 2.087009 CGACAACGAAGACCGCTCC 61.087 63.158 0.00 0.00 43.32 4.70
156 157 1.335697 GACGACAACGAAGACCGCTC 61.336 60.000 0.00 0.00 43.32 5.03
157 158 1.371389 GACGACAACGAAGACCGCT 60.371 57.895 0.00 0.00 43.32 5.52
158 159 1.606350 CTGACGACAACGAAGACCGC 61.606 60.000 0.00 0.00 43.32 5.68
159 160 0.317603 ACTGACGACAACGAAGACCG 60.318 55.000 0.00 0.00 42.66 4.79
160 161 1.785430 GAACTGACGACAACGAAGACC 59.215 52.381 0.00 0.00 42.66 3.85
166 167 0.874175 TGGCTGAACTGACGACAACG 60.874 55.000 0.00 0.00 45.75 4.10
171 172 2.338620 CGGTGGCTGAACTGACGA 59.661 61.111 0.00 0.00 0.00 4.20
211 212 2.280524 CGGTGGTGGCGTCTTCAA 60.281 61.111 0.00 0.00 0.00 2.69
268 269 1.519455 CAGAAGAACTAGGCGGCCG 60.519 63.158 24.05 24.05 0.00 6.13
272 273 1.795768 TGTTGCAGAAGAACTAGGCG 58.204 50.000 0.00 0.00 0.00 5.52
289 290 3.702529 TAGCAGGGCGCATGCATGT 62.703 57.895 30.60 17.36 46.31 3.21
295 296 1.987807 ATTGGTCTAGCAGGGCGCAT 61.988 55.000 10.83 0.00 46.13 4.73
297 298 1.440145 GAATTGGTCTAGCAGGGCGC 61.440 60.000 0.00 0.00 42.91 6.53
305 306 0.249489 CGAGCGGGGAATTGGTCTAG 60.249 60.000 0.00 0.00 0.00 2.43
307 308 2.584608 CGAGCGGGGAATTGGTCT 59.415 61.111 0.00 0.00 0.00 3.85
327 328 3.971702 AACCTCCCAGTGGCTGCC 61.972 66.667 12.87 12.87 0.00 4.85
334 335 3.637273 GTCGGCCAACCTCCCAGT 61.637 66.667 2.24 0.00 0.00 4.00
363 364 0.402121 GGCCTAAAGCAGGGATAGGG 59.598 60.000 0.00 0.00 45.66 3.53
375 376 0.908910 TCCATGCTCTTCGGCCTAAA 59.091 50.000 0.00 0.00 0.00 1.85
377 378 0.681733 GATCCATGCTCTTCGGCCTA 59.318 55.000 0.00 0.00 0.00 3.93
466 467 1.268285 CGATGTCGAAGATGAGCGTCT 60.268 52.381 0.00 0.00 43.02 4.18
718 719 4.309950 GGCGACCTCCGGTGTTGT 62.310 66.667 0.00 0.00 35.25 3.32
835 836 2.824041 CGGGGATCTTGGTTGCGG 60.824 66.667 0.00 0.00 0.00 5.69
887 888 2.431683 GTGGAGTGGAGCTTGGCA 59.568 61.111 0.00 0.00 0.00 4.92
1061 1062 1.257936 CGTCTTCCGTGAGTTGTTGTG 59.742 52.381 0.00 0.00 0.00 3.33
1101 1102 2.644676 GGTAGCCTTCCCTGAAACATC 58.355 52.381 0.00 0.00 0.00 3.06
1203 1204 2.124403 CCAGCCTCACCTCCATGC 60.124 66.667 0.00 0.00 0.00 4.06
1332 1333 1.608590 GCAAGCAGGTGTACAACATGT 59.391 47.619 14.58 0.00 42.63 3.21
1416 1417 1.168407 GCTCAACAGCCAGCAACAGA 61.168 55.000 0.00 0.00 40.14 3.41
1437 1438 7.067251 ACAACAATCCAAAATGAAACAAAGCAT 59.933 29.630 0.00 0.00 0.00 3.79
1447 1448 3.998099 TCGCACAACAATCCAAAATGA 57.002 38.095 0.00 0.00 0.00 2.57
1667 1670 1.228552 TGGGAAGCAGTGAAAGGGC 60.229 57.895 0.00 0.00 0.00 5.19
1798 1801 1.135575 GGCAGAGAGGAAAAATGCACG 60.136 52.381 0.00 0.00 38.63 5.34
1877 1880 2.069273 CGTCTTTGAGGTTGCTTCGAT 58.931 47.619 0.00 0.00 0.00 3.59
2049 2052 6.344500 CAGGTGTATCTCTTTAAGCTCACAT 58.656 40.000 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.