Multiple sequence alignment - TraesCS2B01G212800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G212800 chr2B 100.000 6511 0 0 1 6511 197232735 197239245 0.000000e+00 12024
1 TraesCS2B01G212800 chr2B 95.331 257 11 1 1 256 197226749 197226493 2.190000e-109 407
2 TraesCS2B01G212800 chr2B 96.226 106 2 2 4222 4326 197237060 197236956 8.680000e-39 172
3 TraesCS2B01G212800 chr2D 93.420 3541 167 20 244 3756 138802462 138805964 0.000000e+00 5188
4 TraesCS2B01G212800 chr2D 94.103 1221 35 16 4705 5915 138806987 138808180 0.000000e+00 1821
5 TraesCS2B01G212800 chr2D 92.532 616 21 11 5915 6511 138808293 138808902 0.000000e+00 859
6 TraesCS2B01G212800 chr2D 94.758 496 25 1 3733 4227 138805986 138806481 0.000000e+00 771
7 TraesCS2B01G212800 chr2D 95.619 388 12 2 4319 4706 138806481 138806863 9.280000e-173 617
8 TraesCS2B01G212800 chr2A 93.460 3425 133 28 362 3756 162275079 162271716 0.000000e+00 5000
9 TraesCS2B01G212800 chr2A 92.767 2143 84 28 4414 6509 162270968 162268850 0.000000e+00 3033
10 TraesCS2B01G212800 chr2A 95.670 485 20 1 3745 4228 162271682 162271198 0.000000e+00 778
11 TraesCS2B01G212800 chr2A 93.852 244 14 1 1 244 570068318 570068560 3.710000e-97 366
12 TraesCS2B01G212800 chr2A 95.146 103 5 0 4220 4322 13287299 13287401 5.220000e-36 163
13 TraesCS2B01G212800 chr2A 96.000 100 4 0 4223 4322 704122595 704122496 5.220000e-36 163
14 TraesCS2B01G212800 chr2A 95.556 90 4 0 4320 4409 162271197 162271108 1.890000e-30 145
15 TraesCS2B01G212800 chr3B 95.902 244 9 1 1 244 557610439 557610681 1.700000e-105 394
16 TraesCS2B01G212800 chr3B 93.802 242 12 3 3 243 557608280 557608041 1.730000e-95 361
17 TraesCS2B01G212800 chr1B 95.902 244 9 1 1 244 624495872 624496114 1.700000e-105 394
18 TraesCS2B01G212800 chr7A 92.623 244 17 1 1 244 46988522 46988764 3.740000e-92 350
19 TraesCS2B01G212800 chr7A 92.213 244 18 1 1 244 224840404 224840162 1.740000e-90 344
20 TraesCS2B01G212800 chr7A 92.500 240 15 3 4 243 702598960 702598724 2.250000e-89 340
21 TraesCS2B01G212800 chr6A 92.623 244 16 2 1 244 598816866 598816625 3.740000e-92 350
22 TraesCS2B01G212800 chr3D 90.950 221 18 2 373 593 478071023 478070805 4.940000e-76 296
23 TraesCS2B01G212800 chrUn 90.498 221 19 2 373 593 45079936 45079718 2.300000e-74 291
24 TraesCS2B01G212800 chrUn 90.498 221 19 2 373 593 182436427 182436645 2.300000e-74 291
25 TraesCS2B01G212800 chrUn 90.498 221 19 2 373 593 301689953 301689735 2.300000e-74 291
26 TraesCS2B01G212800 chrUn 90.498 221 19 2 373 593 348814812 348814594 2.300000e-74 291
27 TraesCS2B01G212800 chrUn 90.498 221 19 2 373 593 380937981 380937763 2.300000e-74 291
28 TraesCS2B01G212800 chrUn 90.498 221 19 2 373 593 382280619 382280837 2.300000e-74 291
29 TraesCS2B01G212800 chr7D 93.277 119 8 0 590 708 231596095 231596213 6.710000e-40 176
30 TraesCS2B01G212800 chr5D 93.277 119 8 0 590 708 512405715 512405597 6.710000e-40 176
31 TraesCS2B01G212800 chr5D 92.437 119 9 0 590 708 503306674 503306556 3.120000e-38 171
32 TraesCS2B01G212800 chr1D 93.277 119 8 0 590 708 254449819 254449701 6.710000e-40 176
33 TraesCS2B01G212800 chr1A 93.277 119 7 1 590 708 241517851 241517734 2.410000e-39 174
34 TraesCS2B01G212800 chr1A 95.146 103 4 1 4220 4322 67994279 67994380 1.880000e-35 161
35 TraesCS2B01G212800 chr1A 96.000 100 3 1 4223 4322 106004033 106003935 1.880000e-35 161
36 TraesCS2B01G212800 chr1A 95.146 103 4 1 4220 4322 113803514 113803615 1.880000e-35 161
37 TraesCS2B01G212800 chr7B 92.437 119 9 0 590 708 137679664 137679546 3.120000e-38 171
38 TraesCS2B01G212800 chr4D 92.437 119 9 0 590 708 19883237 19883119 3.120000e-38 171
39 TraesCS2B01G212800 chr4D 93.458 107 7 0 4222 4328 54412660 54412554 6.760000e-35 159
40 TraesCS2B01G212800 chr5A 96.117 103 3 1 4220 4322 557966332 557966433 4.040000e-37 167
41 TraesCS2B01G212800 chr4A 92.793 111 6 2 4212 4322 480473415 480473523 6.760000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G212800 chr2B 197232735 197239245 6510 False 12024.0 12024 100.00000 1 6511 1 chr2B.!!$F1 6510
1 TraesCS2B01G212800 chr2D 138802462 138808902 6440 False 1851.2 5188 94.08640 244 6511 5 chr2D.!!$F1 6267
2 TraesCS2B01G212800 chr2A 162268850 162275079 6229 True 2239.0 5000 94.36325 362 6509 4 chr2A.!!$R2 6147

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 168 0.034756 TGCGCAAGTACATGGACTGT 59.965 50.000 12.48 0.00 39.00 3.55 F
322 323 0.253160 TTCCCATCAGGCCTAGTGGT 60.253 55.000 25.88 2.79 34.51 4.16 F
1458 1488 0.464452 ATTCATCTTCCCGTCCCGTC 59.536 55.000 0.00 0.00 0.00 4.79 F
2091 2141 1.064611 TCTTTCGGGTGTTGGTTTGGA 60.065 47.619 0.00 0.00 0.00 3.53 F
3134 3184 2.158549 AGCCTCAGCAAAGGAAGTCTTT 60.159 45.455 8.49 0.00 45.85 2.52 F
4238 4346 0.108281 GCCTTGTACTCCCTCCGTTC 60.108 60.000 0.00 0.00 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2075 2125 0.256464 AGTTCCAAACCAACACCCGA 59.744 50.000 0.00 0.00 0.00 5.14 R
2125 2175 3.120321 TGTTGCACGGTAACAGAAGAT 57.880 42.857 4.05 0.00 33.43 2.40 R
2798 2848 0.301687 GAGCCATTGTACGTGCGATG 59.698 55.000 22.86 22.86 0.00 3.84 R
3658 3721 0.250727 CATCCACACCCTTGAACCGT 60.251 55.000 0.00 0.00 0.00 4.83 R
4824 5192 0.729116 CGCTTGGCATGAGTGGTTAG 59.271 55.000 4.32 0.00 0.00 2.34 R
5773 6162 0.165944 CCAGTTGACGACGGATTTGC 59.834 55.000 0.00 0.00 0.00 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.717119 AAAAACCTCCAGCCATCTACTAT 57.283 39.130 0.00 0.00 0.00 2.12
28 29 5.717119 AAAACCTCCAGCCATCTACTATT 57.283 39.130 0.00 0.00 0.00 1.73
29 30 6.824958 AAAACCTCCAGCCATCTACTATTA 57.175 37.500 0.00 0.00 0.00 0.98
30 31 6.824958 AAACCTCCAGCCATCTACTATTAA 57.175 37.500 0.00 0.00 0.00 1.40
31 32 5.810080 ACCTCCAGCCATCTACTATTAAC 57.190 43.478 0.00 0.00 0.00 2.01
32 33 4.281182 ACCTCCAGCCATCTACTATTAACG 59.719 45.833 0.00 0.00 0.00 3.18
33 34 4.238514 CTCCAGCCATCTACTATTAACGC 58.761 47.826 0.00 0.00 0.00 4.84
34 35 3.639561 TCCAGCCATCTACTATTAACGCA 59.360 43.478 0.00 0.00 0.00 5.24
35 36 3.741344 CCAGCCATCTACTATTAACGCAC 59.259 47.826 0.00 0.00 0.00 5.34
36 37 4.368315 CAGCCATCTACTATTAACGCACA 58.632 43.478 0.00 0.00 0.00 4.57
37 38 4.808895 CAGCCATCTACTATTAACGCACAA 59.191 41.667 0.00 0.00 0.00 3.33
38 39 5.050490 AGCCATCTACTATTAACGCACAAG 58.950 41.667 0.00 0.00 0.00 3.16
39 40 4.809426 GCCATCTACTATTAACGCACAAGT 59.191 41.667 0.00 0.00 0.00 3.16
40 41 5.276868 GCCATCTACTATTAACGCACAAGTG 60.277 44.000 0.00 0.00 0.00 3.16
41 42 5.234329 CCATCTACTATTAACGCACAAGTGG 59.766 44.000 2.00 0.00 0.00 4.00
42 43 5.648178 TCTACTATTAACGCACAAGTGGA 57.352 39.130 2.00 0.00 0.00 4.02
43 44 5.404946 TCTACTATTAACGCACAAGTGGAC 58.595 41.667 2.00 0.00 0.00 4.02
44 45 3.997762 ACTATTAACGCACAAGTGGACA 58.002 40.909 2.00 0.00 0.00 4.02
45 46 3.994392 ACTATTAACGCACAAGTGGACAG 59.006 43.478 2.00 0.00 0.00 3.51
46 47 1.588674 TTAACGCACAAGTGGACAGG 58.411 50.000 2.00 0.00 0.00 4.00
47 48 0.466543 TAACGCACAAGTGGACAGGT 59.533 50.000 2.00 0.00 0.00 4.00
48 49 1.095228 AACGCACAAGTGGACAGGTG 61.095 55.000 2.00 0.00 0.00 4.00
50 51 4.885426 CACAAGTGGACAGGTGCT 57.115 55.556 0.00 0.00 0.00 4.40
51 52 2.324215 CACAAGTGGACAGGTGCTG 58.676 57.895 0.00 0.00 37.52 4.41
52 53 1.526917 ACAAGTGGACAGGTGCTGC 60.527 57.895 0.00 0.00 34.37 5.25
53 54 1.526686 CAAGTGGACAGGTGCTGCA 60.527 57.895 0.00 0.00 34.37 4.41
54 55 1.526917 AAGTGGACAGGTGCTGCAC 60.527 57.895 24.02 24.02 34.37 4.57
55 56 2.203195 GTGGACAGGTGCTGCACA 60.203 61.111 31.35 9.60 35.86 4.57
56 57 1.823470 GTGGACAGGTGCTGCACAA 60.823 57.895 31.35 8.90 35.86 3.33
57 58 1.526686 TGGACAGGTGCTGCACAAG 60.527 57.895 31.35 24.28 35.86 3.16
58 59 1.526917 GGACAGGTGCTGCACAAGT 60.527 57.895 31.35 27.00 35.86 3.16
59 60 1.650912 GACAGGTGCTGCACAAGTG 59.349 57.895 31.35 25.35 35.86 3.16
60 61 1.789078 GACAGGTGCTGCACAAGTGG 61.789 60.000 31.35 17.94 35.86 4.00
61 62 2.908940 AGGTGCTGCACAAGTGGC 60.909 61.111 31.35 14.69 35.86 5.01
62 63 3.218470 GGTGCTGCACAAGTGGCA 61.218 61.111 31.35 1.39 39.32 4.92
67 68 4.653893 TGCACAAGTGGCAGTCAA 57.346 50.000 0.00 0.00 36.11 3.18
68 69 2.879372 TGCACAAGTGGCAGTCAAA 58.121 47.368 0.00 0.00 36.11 2.69
69 70 0.740149 TGCACAAGTGGCAGTCAAAG 59.260 50.000 0.00 0.00 36.11 2.77
70 71 0.595825 GCACAAGTGGCAGTCAAAGC 60.596 55.000 0.00 0.00 0.00 3.51
71 72 0.740149 CACAAGTGGCAGTCAAAGCA 59.260 50.000 0.00 0.00 0.00 3.91
72 73 0.740737 ACAAGTGGCAGTCAAAGCAC 59.259 50.000 0.00 0.00 0.00 4.40
73 74 0.740149 CAAGTGGCAGTCAAAGCACA 59.260 50.000 0.00 0.00 0.00 4.57
74 75 1.027357 AAGTGGCAGTCAAAGCACAG 58.973 50.000 0.00 0.00 0.00 3.66
75 76 1.008079 GTGGCAGTCAAAGCACAGC 60.008 57.895 0.00 0.00 0.00 4.40
76 77 1.152902 TGGCAGTCAAAGCACAGCT 60.153 52.632 0.00 0.00 42.56 4.24
77 78 1.285023 GGCAGTCAAAGCACAGCTG 59.715 57.895 13.48 13.48 39.62 4.24
78 79 1.285023 GCAGTCAAAGCACAGCTGG 59.715 57.895 19.93 8.27 39.62 4.85
79 80 1.285023 CAGTCAAAGCACAGCTGGC 59.715 57.895 19.93 18.01 39.62 4.85
80 81 1.152902 AGTCAAAGCACAGCTGGCA 60.153 52.632 23.46 5.65 39.62 4.92
81 82 0.752743 AGTCAAAGCACAGCTGGCAA 60.753 50.000 23.46 8.13 39.62 4.52
82 83 0.595825 GTCAAAGCACAGCTGGCAAC 60.596 55.000 23.46 14.20 39.62 4.17
83 84 1.659335 CAAAGCACAGCTGGCAACG 60.659 57.895 23.46 10.90 39.62 4.10
92 93 3.114616 CTGGCAACGGCTGACTCG 61.115 66.667 0.00 0.00 40.87 4.18
93 94 4.680237 TGGCAACGGCTGACTCGG 62.680 66.667 0.00 0.00 40.87 4.63
104 105 2.343758 GACTCGGCCAAGTCAGCA 59.656 61.111 19.30 0.00 44.20 4.41
105 106 1.301716 GACTCGGCCAAGTCAGCAA 60.302 57.895 19.30 0.00 44.20 3.91
106 107 0.884704 GACTCGGCCAAGTCAGCAAA 60.885 55.000 19.30 0.00 44.20 3.68
107 108 0.250901 ACTCGGCCAAGTCAGCAAAT 60.251 50.000 2.24 0.00 0.00 2.32
108 109 1.003118 ACTCGGCCAAGTCAGCAAATA 59.997 47.619 2.24 0.00 0.00 1.40
109 110 1.398390 CTCGGCCAAGTCAGCAAATAC 59.602 52.381 2.24 0.00 0.00 1.89
110 111 0.096976 CGGCCAAGTCAGCAAATACG 59.903 55.000 2.24 0.00 0.00 3.06
111 112 1.165270 GGCCAAGTCAGCAAATACGT 58.835 50.000 0.00 0.00 0.00 3.57
112 113 2.352388 GGCCAAGTCAGCAAATACGTA 58.648 47.619 0.00 0.00 0.00 3.57
113 114 2.351726 GGCCAAGTCAGCAAATACGTAG 59.648 50.000 0.00 0.00 0.00 3.51
114 115 2.223044 GCCAAGTCAGCAAATACGTAGC 60.223 50.000 0.08 0.00 0.00 3.58
115 116 3.262420 CCAAGTCAGCAAATACGTAGCT 58.738 45.455 0.08 1.28 39.63 3.32
116 117 3.307242 CCAAGTCAGCAAATACGTAGCTC 59.693 47.826 4.93 0.00 36.26 4.09
117 118 3.868757 AGTCAGCAAATACGTAGCTCA 57.131 42.857 4.93 0.00 36.26 4.26
118 119 4.188247 AGTCAGCAAATACGTAGCTCAA 57.812 40.909 4.93 0.00 36.26 3.02
119 120 4.759782 AGTCAGCAAATACGTAGCTCAAT 58.240 39.130 4.93 0.00 36.26 2.57
120 121 5.178797 AGTCAGCAAATACGTAGCTCAATT 58.821 37.500 4.93 0.00 36.26 2.32
121 122 5.292101 AGTCAGCAAATACGTAGCTCAATTC 59.708 40.000 4.93 0.00 36.26 2.17
122 123 4.267690 TCAGCAAATACGTAGCTCAATTCG 59.732 41.667 4.93 0.00 36.26 3.34
123 124 4.032900 CAGCAAATACGTAGCTCAATTCGT 59.967 41.667 4.93 0.00 36.26 3.85
124 125 5.231357 CAGCAAATACGTAGCTCAATTCGTA 59.769 40.000 4.93 0.00 41.64 3.43
125 126 5.983720 AGCAAATACGTAGCTCAATTCGTAT 59.016 36.000 0.08 2.36 46.51 3.06
126 127 7.114388 CAGCAAATACGTAGCTCAATTCGTATA 59.886 37.037 15.49 0.19 44.75 1.47
127 128 7.813148 AGCAAATACGTAGCTCAATTCGTATAT 59.187 33.333 15.49 8.08 44.75 0.86
128 129 9.069078 GCAAATACGTAGCTCAATTCGTATATA 57.931 33.333 15.49 0.00 44.75 0.86
130 131 9.565213 AAATACGTAGCTCAATTCGTATATACC 57.435 33.333 7.30 0.00 44.75 2.73
131 132 5.625251 ACGTAGCTCAATTCGTATATACCG 58.375 41.667 7.30 3.28 34.78 4.02
132 133 5.409520 ACGTAGCTCAATTCGTATATACCGA 59.590 40.000 7.30 5.48 34.78 4.69
133 134 5.731723 CGTAGCTCAATTCGTATATACCGAC 59.268 44.000 7.30 0.00 33.41 4.79
134 135 5.056894 AGCTCAATTCGTATATACCGACC 57.943 43.478 7.30 0.00 33.41 4.79
135 136 4.521639 AGCTCAATTCGTATATACCGACCA 59.478 41.667 7.30 0.00 33.41 4.02
136 137 5.010314 AGCTCAATTCGTATATACCGACCAA 59.990 40.000 7.30 0.00 33.41 3.67
137 138 5.693104 GCTCAATTCGTATATACCGACCAAA 59.307 40.000 7.30 0.00 33.41 3.28
138 139 6.128902 GCTCAATTCGTATATACCGACCAAAG 60.129 42.308 7.30 5.25 33.41 2.77
139 140 6.808829 TCAATTCGTATATACCGACCAAAGT 58.191 36.000 7.30 0.00 33.41 2.66
140 141 6.698329 TCAATTCGTATATACCGACCAAAGTG 59.302 38.462 7.30 3.74 33.41 3.16
141 142 5.833406 TTCGTATATACCGACCAAAGTGA 57.167 39.130 7.30 0.00 33.41 3.41
142 143 5.833406 TCGTATATACCGACCAAAGTGAA 57.167 39.130 7.30 0.00 0.00 3.18
143 144 5.581605 TCGTATATACCGACCAAAGTGAAC 58.418 41.667 7.30 0.00 0.00 3.18
144 145 4.741676 CGTATATACCGACCAAAGTGAACC 59.258 45.833 7.30 0.00 0.00 3.62
145 146 2.484742 ATACCGACCAAAGTGAACCC 57.515 50.000 0.00 0.00 0.00 4.11
146 147 0.397564 TACCGACCAAAGTGAACCCC 59.602 55.000 0.00 0.00 0.00 4.95
147 148 1.602605 CCGACCAAAGTGAACCCCC 60.603 63.158 0.00 0.00 0.00 5.40
148 149 1.454539 CGACCAAAGTGAACCCCCT 59.545 57.895 0.00 0.00 0.00 4.79
149 150 0.889186 CGACCAAAGTGAACCCCCTG 60.889 60.000 0.00 0.00 0.00 4.45
150 151 1.152546 ACCAAAGTGAACCCCCTGC 60.153 57.895 0.00 0.00 0.00 4.85
151 152 2.268076 CCAAAGTGAACCCCCTGCG 61.268 63.158 0.00 0.00 0.00 5.18
152 153 2.597510 AAAGTGAACCCCCTGCGC 60.598 61.111 0.00 0.00 0.00 6.09
153 154 3.429372 AAAGTGAACCCCCTGCGCA 62.429 57.895 10.98 10.98 0.00 6.09
154 155 2.920076 AAAGTGAACCCCCTGCGCAA 62.920 55.000 13.05 0.00 0.00 4.85
155 156 3.365265 GTGAACCCCCTGCGCAAG 61.365 66.667 13.05 4.91 43.44 4.01
156 157 3.884774 TGAACCCCCTGCGCAAGT 61.885 61.111 13.05 3.63 41.68 3.16
157 158 2.349755 GAACCCCCTGCGCAAGTA 59.650 61.111 13.05 0.00 41.68 2.24
158 159 2.033602 AACCCCCTGCGCAAGTAC 59.966 61.111 13.05 0.00 41.68 2.73
159 160 2.741486 GAACCCCCTGCGCAAGTACA 62.741 60.000 13.05 0.00 41.68 2.90
160 161 2.137177 AACCCCCTGCGCAAGTACAT 62.137 55.000 13.05 0.00 41.68 2.29
161 162 2.114670 CCCCCTGCGCAAGTACATG 61.115 63.158 13.05 0.00 41.68 3.21
162 163 2.114670 CCCCTGCGCAAGTACATGG 61.115 63.158 13.05 7.13 41.68 3.66
163 164 1.078497 CCCTGCGCAAGTACATGGA 60.078 57.895 13.05 0.00 41.68 3.41
164 165 1.369091 CCCTGCGCAAGTACATGGAC 61.369 60.000 13.05 0.00 41.68 4.02
165 166 0.391661 CCTGCGCAAGTACATGGACT 60.392 55.000 13.05 4.17 41.68 3.85
166 167 0.723414 CTGCGCAAGTACATGGACTG 59.277 55.000 12.48 7.24 41.68 3.51
167 168 0.034756 TGCGCAAGTACATGGACTGT 59.965 50.000 12.48 0.00 39.00 3.55
168 169 1.273886 TGCGCAAGTACATGGACTGTA 59.726 47.619 12.48 0.00 37.24 2.74
169 170 2.093711 TGCGCAAGTACATGGACTGTAT 60.094 45.455 12.48 0.00 42.21 2.29
170 171 2.936498 GCGCAAGTACATGGACTGTATT 59.064 45.455 12.48 0.00 42.21 1.89
171 172 3.374058 GCGCAAGTACATGGACTGTATTT 59.626 43.478 12.48 0.00 42.21 1.40
172 173 4.494199 GCGCAAGTACATGGACTGTATTTC 60.494 45.833 12.48 0.00 42.21 2.17
173 174 4.259810 CGCAAGTACATGGACTGTATTTCG 60.260 45.833 12.48 5.53 42.21 3.46
174 175 4.034048 GCAAGTACATGGACTGTATTTCGG 59.966 45.833 12.48 0.00 42.21 4.30
175 176 4.402056 AGTACATGGACTGTATTTCGGG 57.598 45.455 10.64 0.00 42.21 5.14
176 177 3.773119 AGTACATGGACTGTATTTCGGGT 59.227 43.478 10.64 0.00 42.21 5.28
177 178 4.957954 AGTACATGGACTGTATTTCGGGTA 59.042 41.667 10.64 0.00 42.21 3.69
178 179 5.601313 AGTACATGGACTGTATTTCGGGTAT 59.399 40.000 10.64 0.00 42.21 2.73
179 180 5.367945 ACATGGACTGTATTTCGGGTATT 57.632 39.130 0.00 0.00 35.91 1.89
180 181 5.751586 ACATGGACTGTATTTCGGGTATTT 58.248 37.500 0.00 0.00 35.91 1.40
181 182 6.184789 ACATGGACTGTATTTCGGGTATTTT 58.815 36.000 0.00 0.00 35.91 1.82
182 183 6.094881 ACATGGACTGTATTTCGGGTATTTTG 59.905 38.462 0.00 0.00 35.91 2.44
183 184 5.806818 TGGACTGTATTTCGGGTATTTTGA 58.193 37.500 0.00 0.00 0.00 2.69
184 185 6.239396 TGGACTGTATTTCGGGTATTTTGAA 58.761 36.000 0.00 0.00 0.00 2.69
185 186 6.373216 TGGACTGTATTTCGGGTATTTTGAAG 59.627 38.462 0.00 0.00 0.00 3.02
186 187 6.373495 GGACTGTATTTCGGGTATTTTGAAGT 59.627 38.462 0.00 0.00 0.00 3.01
187 188 7.550196 GGACTGTATTTCGGGTATTTTGAAGTA 59.450 37.037 0.00 0.00 0.00 2.24
188 189 8.488651 ACTGTATTTCGGGTATTTTGAAGTAG 57.511 34.615 0.00 0.00 0.00 2.57
189 190 8.098912 ACTGTATTTCGGGTATTTTGAAGTAGT 58.901 33.333 0.00 0.00 0.00 2.73
190 191 8.259049 TGTATTTCGGGTATTTTGAAGTAGTG 57.741 34.615 0.00 0.00 0.00 2.74
191 192 6.753107 ATTTCGGGTATTTTGAAGTAGTGG 57.247 37.500 0.00 0.00 0.00 4.00
192 193 4.895668 TCGGGTATTTTGAAGTAGTGGT 57.104 40.909 0.00 0.00 0.00 4.16
193 194 5.999205 TCGGGTATTTTGAAGTAGTGGTA 57.001 39.130 0.00 0.00 0.00 3.25
194 195 5.723295 TCGGGTATTTTGAAGTAGTGGTAC 58.277 41.667 0.00 0.00 0.00 3.34
195 196 5.481473 TCGGGTATTTTGAAGTAGTGGTACT 59.519 40.000 0.00 0.00 41.61 2.73
206 207 5.388408 AGTAGTGGTACTTAAGTGTCAGC 57.612 43.478 18.56 8.61 35.88 4.26
207 208 5.078256 AGTAGTGGTACTTAAGTGTCAGCT 58.922 41.667 18.56 15.25 35.88 4.24
208 209 6.243900 AGTAGTGGTACTTAAGTGTCAGCTA 58.756 40.000 18.56 14.49 35.88 3.32
209 210 5.646577 AGTGGTACTTAAGTGTCAGCTAG 57.353 43.478 18.56 0.00 0.00 3.42
210 211 4.082136 AGTGGTACTTAAGTGTCAGCTAGC 60.082 45.833 18.56 6.62 0.00 3.42
211 212 4.082136 GTGGTACTTAAGTGTCAGCTAGCT 60.082 45.833 18.56 12.68 0.00 3.32
212 213 4.158025 TGGTACTTAAGTGTCAGCTAGCTC 59.842 45.833 16.15 5.23 0.00 4.09
213 214 4.158025 GGTACTTAAGTGTCAGCTAGCTCA 59.842 45.833 16.15 8.30 0.00 4.26
214 215 4.873746 ACTTAAGTGTCAGCTAGCTCAA 57.126 40.909 16.15 2.81 0.00 3.02
215 216 4.815269 ACTTAAGTGTCAGCTAGCTCAAG 58.185 43.478 16.15 11.32 0.00 3.02
216 217 4.282195 ACTTAAGTGTCAGCTAGCTCAAGT 59.718 41.667 16.15 11.90 0.00 3.16
217 218 3.760580 AAGTGTCAGCTAGCTCAAGTT 57.239 42.857 16.15 9.48 0.00 2.66
218 219 3.760580 AGTGTCAGCTAGCTCAAGTTT 57.239 42.857 16.15 0.00 0.00 2.66
219 220 4.078639 AGTGTCAGCTAGCTCAAGTTTT 57.921 40.909 16.15 0.00 0.00 2.43
220 221 3.812053 AGTGTCAGCTAGCTCAAGTTTTG 59.188 43.478 16.15 1.67 0.00 2.44
221 222 3.561725 GTGTCAGCTAGCTCAAGTTTTGT 59.438 43.478 16.15 0.00 0.00 2.83
222 223 3.561310 TGTCAGCTAGCTCAAGTTTTGTG 59.439 43.478 16.15 0.02 0.00 3.33
223 224 3.809832 GTCAGCTAGCTCAAGTTTTGTGA 59.190 43.478 16.15 2.82 0.00 3.58
224 225 3.809832 TCAGCTAGCTCAAGTTTTGTGAC 59.190 43.478 16.15 0.00 0.00 3.67
225 226 3.058639 CAGCTAGCTCAAGTTTTGTGACC 60.059 47.826 16.15 0.00 0.00 4.02
226 227 3.142174 GCTAGCTCAAGTTTTGTGACCT 58.858 45.455 7.70 0.00 0.00 3.85
227 228 4.040461 AGCTAGCTCAAGTTTTGTGACCTA 59.960 41.667 12.68 0.00 0.00 3.08
228 229 4.152580 GCTAGCTCAAGTTTTGTGACCTAC 59.847 45.833 7.70 0.00 0.00 3.18
229 230 4.150897 AGCTCAAGTTTTGTGACCTACA 57.849 40.909 0.00 0.00 37.56 2.74
230 231 4.130118 AGCTCAAGTTTTGTGACCTACAG 58.870 43.478 0.00 0.00 41.10 2.74
231 232 3.877508 GCTCAAGTTTTGTGACCTACAGT 59.122 43.478 0.00 0.00 41.10 3.55
232 233 4.260784 GCTCAAGTTTTGTGACCTACAGTG 60.261 45.833 0.00 0.00 41.10 3.66
233 234 5.092554 TCAAGTTTTGTGACCTACAGTGA 57.907 39.130 0.00 0.00 41.10 3.41
234 235 5.492895 TCAAGTTTTGTGACCTACAGTGAA 58.507 37.500 0.00 0.00 41.10 3.18
235 236 6.119536 TCAAGTTTTGTGACCTACAGTGAAT 58.880 36.000 0.00 0.00 41.10 2.57
236 237 6.601613 TCAAGTTTTGTGACCTACAGTGAATT 59.398 34.615 0.00 0.00 41.10 2.17
237 238 7.122055 TCAAGTTTTGTGACCTACAGTGAATTT 59.878 33.333 0.00 0.00 41.10 1.82
238 239 7.404671 AGTTTTGTGACCTACAGTGAATTTT 57.595 32.000 0.00 0.00 41.10 1.82
239 240 7.836842 AGTTTTGTGACCTACAGTGAATTTTT 58.163 30.769 0.00 0.00 41.10 1.94
240 241 7.973944 AGTTTTGTGACCTACAGTGAATTTTTC 59.026 33.333 0.00 0.00 41.10 2.29
241 242 7.639113 TTTGTGACCTACAGTGAATTTTTCT 57.361 32.000 0.00 0.00 41.10 2.52
242 243 6.861065 TGTGACCTACAGTGAATTTTTCTC 57.139 37.500 0.00 0.00 33.42 2.87
249 250 9.930693 ACCTACAGTGAATTTTTCTCTACTTAG 57.069 33.333 0.00 0.00 32.67 2.18
250 251 9.372369 CCTACAGTGAATTTTTCTCTACTTAGG 57.628 37.037 0.00 0.00 32.67 2.69
282 283 9.802039 AACTCTGTAATTTCATAACCTTAACCA 57.198 29.630 0.00 0.00 0.00 3.67
286 287 9.634163 CTGTAATTTCATAACCTTAACCAAACC 57.366 33.333 0.00 0.00 0.00 3.27
291 292 4.041938 TCATAACCTTAACCAAACCGAGGT 59.958 41.667 0.00 0.00 42.29 3.85
312 313 5.711976 AGGTTGTCATACTTTTTCCCATCAG 59.288 40.000 0.00 0.00 0.00 2.90
318 319 3.372440 ACTTTTTCCCATCAGGCCTAG 57.628 47.619 3.98 0.00 34.51 3.02
322 323 0.253160 TTCCCATCAGGCCTAGTGGT 60.253 55.000 25.88 2.79 34.51 4.16
335 336 2.094130 CCTAGTGGTCTTTCGTCCCTTC 60.094 54.545 0.00 0.00 0.00 3.46
343 344 2.621998 TCTTTCGTCCCTTCGCCTATAG 59.378 50.000 0.00 0.00 0.00 1.31
459 460 4.713321 AGCCCAAAATCTAATGTGCTTGAT 59.287 37.500 0.00 0.00 0.00 2.57
470 471 7.394016 TCTAATGTGCTTGATTTGGAAGTAGA 58.606 34.615 0.00 0.00 0.00 2.59
485 486 3.669251 AGTAGACCACTCTTTCACTGC 57.331 47.619 0.00 0.00 28.33 4.40
487 488 0.601311 AGACCACTCTTTCACTGCGC 60.601 55.000 0.00 0.00 0.00 6.09
524 525 0.539438 TGTAGCCACCCTTTTGCCTG 60.539 55.000 0.00 0.00 0.00 4.85
554 555 4.081420 ACATGATCCGGGTATTCTATCTGC 60.081 45.833 0.00 0.00 0.00 4.26
561 562 3.491964 CGGGTATTCTATCTGCGGTTGAA 60.492 47.826 0.00 0.00 0.00 2.69
683 685 5.413833 GCATACCATATCTCAACAGATTGGG 59.586 44.000 13.29 8.21 40.18 4.12
696 698 8.117813 TCAACAGATTGGGGTAATTTTTCTAC 57.882 34.615 0.00 0.00 36.39 2.59
701 703 3.770263 GGGGTAATTTTTCTACCGCAC 57.230 47.619 10.28 0.00 46.48 5.34
728 730 4.012374 AGTGATTTCGCTGAATTCACCAT 58.988 39.130 25.22 15.19 45.79 3.55
734 736 5.673337 TTCGCTGAATTCACCATATAAGC 57.327 39.130 3.38 3.03 0.00 3.09
735 737 4.065088 TCGCTGAATTCACCATATAAGCC 58.935 43.478 3.38 0.00 0.00 4.35
736 738 3.120546 CGCTGAATTCACCATATAAGCCG 60.121 47.826 3.38 0.00 0.00 5.52
777 779 1.598517 CCCAAATCCAAAGCCCAGC 59.401 57.895 0.00 0.00 0.00 4.85
952 973 2.439104 GCAAACCCCAGCACCCAAA 61.439 57.895 0.00 0.00 0.00 3.28
966 987 1.065418 ACCCAAAGCTACCCAGAATCG 60.065 52.381 0.00 0.00 0.00 3.34
1208 1232 1.067071 CGAGGAAACGAAACCCTAGCT 60.067 52.381 0.00 0.00 35.09 3.32
1305 1335 3.758088 CTCCTGGACGTCGATGCCG 62.758 68.421 9.92 0.00 37.07 5.69
1452 1482 3.325135 GGATCACCTATTCATCTTCCCGT 59.675 47.826 0.00 0.00 0.00 5.28
1458 1488 0.464452 ATTCATCTTCCCGTCCCGTC 59.536 55.000 0.00 0.00 0.00 4.79
1491 1521 5.475273 TTTGCTTAGCGATTCTGAATGAG 57.525 39.130 7.78 3.07 0.00 2.90
1584 1614 5.812127 GCATTTCTGATGTTAAAATGGGTCC 59.188 40.000 8.59 0.00 39.59 4.46
1725 1775 4.640805 TTCGTACAAATCGAAGCTCAAC 57.359 40.909 0.00 0.00 41.33 3.18
1728 1778 3.673338 CGTACAAATCGAAGCTCAACTGA 59.327 43.478 0.00 0.00 0.00 3.41
1789 1839 2.887151 ATGCAGGCTGTCCTTTAGTT 57.113 45.000 17.16 0.00 41.93 2.24
1796 1846 3.889538 AGGCTGTCCTTTAGTTCCAAAAC 59.110 43.478 0.00 0.00 40.66 2.43
2002 2052 9.682465 AGAGATGGGTTAATTAAGTTAAGAACC 57.318 33.333 22.72 22.72 37.10 3.62
2029 2079 4.770010 TCAATCTGACCCCCAAATTGTAAC 59.230 41.667 0.00 0.00 0.00 2.50
2043 2093 7.309990 CCCAAATTGTAACAGTTCAATGGATCT 60.310 37.037 13.95 0.00 34.98 2.75
2075 2125 6.259550 AGCGAGTTCATGCTTTATTTCTTT 57.740 33.333 0.00 0.00 38.57 2.52
2077 2127 5.225949 GCGAGTTCATGCTTTATTTCTTTCG 59.774 40.000 0.00 0.00 0.00 3.46
2079 2129 5.954335 AGTTCATGCTTTATTTCTTTCGGG 58.046 37.500 0.00 0.00 0.00 5.14
2089 2139 3.512033 TTTCTTTCGGGTGTTGGTTTG 57.488 42.857 0.00 0.00 0.00 2.93
2091 2141 1.064611 TCTTTCGGGTGTTGGTTTGGA 60.065 47.619 0.00 0.00 0.00 3.53
2149 2199 4.449743 TCTTCTGTTACCGTGCAACAATAC 59.550 41.667 0.00 0.00 35.57 1.89
2345 2395 7.877097 AGCCTAGATGATATCTGTTGAATGAAC 59.123 37.037 3.98 0.00 40.51 3.18
2462 2512 8.910351 AATATGGCCTTAAGTATTCAGAAGTC 57.090 34.615 3.32 0.00 0.00 3.01
2479 2529 3.688694 AGTCGTAATGTGGGCAGTTAA 57.311 42.857 0.00 0.00 0.00 2.01
2626 2676 7.881775 ATTATTGTCTCTGACCCAAAATACC 57.118 36.000 0.00 0.00 0.00 2.73
2668 2718 9.988815 GATGTCTTATACTATTGTCATCTGGTT 57.011 33.333 0.00 0.00 0.00 3.67
2673 2723 9.599866 CTTATACTATTGTCATCTGGTTGTGAA 57.400 33.333 0.00 0.00 0.00 3.18
2754 2804 4.258457 ACCAGACAGCCTAGAGACTTAT 57.742 45.455 0.00 0.00 0.00 1.73
2759 2809 7.172342 CCAGACAGCCTAGAGACTTATAGTAT 58.828 42.308 0.00 0.00 0.00 2.12
2798 2848 7.260603 AGAAAATCAAGCATATTGGTTACAGC 58.739 34.615 0.00 0.00 35.69 4.40
2802 2852 4.273235 TCAAGCATATTGGTTACAGCATCG 59.727 41.667 0.00 0.00 35.69 3.84
3102 3152 5.289193 GCATGTGAATGTTTATGATTTGCGT 59.711 36.000 0.00 0.00 0.00 5.24
3134 3184 2.158549 AGCCTCAGCAAAGGAAGTCTTT 60.159 45.455 8.49 0.00 45.85 2.52
3208 3258 7.484035 AAGACGTTCTTATGATAATTCTGCC 57.516 36.000 0.00 0.00 34.42 4.85
3240 3290 9.565213 GCATTGATCAATATTCCTGCTAAATAC 57.435 33.333 20.32 0.00 0.00 1.89
3356 3406 4.959210 TGAACCCTTCTTGTTCATTTGGAA 59.041 37.500 1.94 0.00 45.19 3.53
3361 3411 4.202243 CCTTCTTGTTCATTTGGAAAGGCA 60.202 41.667 0.00 0.00 37.23 4.75
3371 3421 2.673775 TGGAAAGGCACCATGAGAAA 57.326 45.000 0.00 0.00 32.03 2.52
3377 3427 5.127682 GGAAAGGCACCATGAGAAATGTTAT 59.872 40.000 0.00 0.00 0.00 1.89
3378 3428 5.841957 AAGGCACCATGAGAAATGTTATC 57.158 39.130 0.00 0.00 0.00 1.75
3379 3429 5.121380 AGGCACCATGAGAAATGTTATCT 57.879 39.130 0.00 0.00 0.00 1.98
3380 3430 5.513233 AGGCACCATGAGAAATGTTATCTT 58.487 37.500 0.00 0.00 0.00 2.40
3381 3431 5.359009 AGGCACCATGAGAAATGTTATCTTG 59.641 40.000 0.00 0.00 0.00 3.02
3382 3432 5.126061 GGCACCATGAGAAATGTTATCTTGT 59.874 40.000 0.00 0.00 0.00 3.16
3383 3433 6.318648 GGCACCATGAGAAATGTTATCTTGTA 59.681 38.462 0.00 0.00 0.00 2.41
3384 3434 7.189512 GCACCATGAGAAATGTTATCTTGTAC 58.810 38.462 0.00 0.00 0.00 2.90
3385 3435 7.066284 GCACCATGAGAAATGTTATCTTGTACT 59.934 37.037 0.00 0.00 0.00 2.73
3386 3436 8.393366 CACCATGAGAAATGTTATCTTGTACTG 58.607 37.037 0.00 0.00 0.00 2.74
3387 3437 8.103305 ACCATGAGAAATGTTATCTTGTACTGT 58.897 33.333 0.00 0.00 0.00 3.55
3388 3438 8.950210 CCATGAGAAATGTTATCTTGTACTGTT 58.050 33.333 0.00 0.00 0.00 3.16
3493 3555 9.199645 TCATGGAACCATATATCATTTTTGTGT 57.800 29.630 6.00 0.00 34.91 3.72
3502 3565 6.773976 ATATCATTTTTGTGTACCAGTGGG 57.226 37.500 15.21 0.00 41.29 4.61
3535 3598 5.845103 TGTTTGAGATTCATGCAACAATGT 58.155 33.333 0.00 0.00 26.05 2.71
3575 3638 9.234827 TGTATAGATTATCATTTGGCTCCATTG 57.765 33.333 0.00 0.00 0.00 2.82
3578 3641 5.601313 AGATTATCATTTGGCTCCATTGCTT 59.399 36.000 0.00 0.00 0.00 3.91
3619 3682 6.294176 GCTTGACAAGTATGGTCATTTTGTCT 60.294 38.462 24.45 6.63 40.67 3.41
3648 3711 7.147983 TGGTTATAGAATTTCCCATTCGGTTTG 60.148 37.037 0.00 0.00 33.51 2.93
3658 3721 4.888239 TCCCATTCGGTTTGTAACTTTCAA 59.112 37.500 0.00 0.00 0.00 2.69
3725 3788 2.514803 AGGTGCAATAACAGGTCAACC 58.485 47.619 0.00 0.00 0.00 3.77
3794 3901 4.602340 TTTAGCTTCTCGGTGTCTCTTT 57.398 40.909 0.00 0.00 0.00 2.52
3797 3904 2.365617 AGCTTCTCGGTGTCTCTTTCAA 59.634 45.455 0.00 0.00 0.00 2.69
3865 3972 8.114331 TCATAATGAAAGATTCACAGCAAAGT 57.886 30.769 0.00 0.00 43.48 2.66
3874 3981 7.750229 AGATTCACAGCAAAGTCTGAATTTA 57.250 32.000 2.49 0.00 34.26 1.40
4027 4135 3.247006 TGGACGCCTTCTATTTCTGTC 57.753 47.619 0.00 0.00 0.00 3.51
4032 4140 5.251601 ACGCCTTCTATTTCTGTCTAGTC 57.748 43.478 0.00 0.00 0.00 2.59
4036 4144 5.506649 GCCTTCTATTTCTGTCTAGTCCTCG 60.507 48.000 0.00 0.00 0.00 4.63
4069 4177 4.704540 GGTTGATCCACATTAATGGTGTCA 59.295 41.667 19.37 13.68 40.95 3.58
4072 4180 5.132502 TGATCCACATTAATGGTGTCATCC 58.867 41.667 19.37 2.30 40.95 3.51
4083 4191 2.365941 TGGTGTCATCCGTTCTGTGTTA 59.634 45.455 0.00 0.00 0.00 2.41
4232 4340 1.783071 GCTCTAGCCTTGTACTCCCT 58.217 55.000 0.00 0.00 34.31 4.20
4233 4341 1.684450 GCTCTAGCCTTGTACTCCCTC 59.316 57.143 0.00 0.00 34.31 4.30
4234 4342 2.312390 CTCTAGCCTTGTACTCCCTCC 58.688 57.143 0.00 0.00 0.00 4.30
4235 4343 1.033574 CTAGCCTTGTACTCCCTCCG 58.966 60.000 0.00 0.00 0.00 4.63
4236 4344 0.333993 TAGCCTTGTACTCCCTCCGT 59.666 55.000 0.00 0.00 0.00 4.69
4237 4345 0.544595 AGCCTTGTACTCCCTCCGTT 60.545 55.000 0.00 0.00 0.00 4.44
4238 4346 0.108281 GCCTTGTACTCCCTCCGTTC 60.108 60.000 0.00 0.00 0.00 3.95
4239 4347 0.535797 CCTTGTACTCCCTCCGTTCC 59.464 60.000 0.00 0.00 0.00 3.62
4240 4348 1.263356 CTTGTACTCCCTCCGTTCCA 58.737 55.000 0.00 0.00 0.00 3.53
4241 4349 1.621814 CTTGTACTCCCTCCGTTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
4242 4350 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
4243 4351 2.048601 TGTACTCCCTCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
4244 4352 2.640826 TGTACTCCCTCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
4245 4353 3.839490 TGTACTCCCTCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
4246 4354 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4247 4355 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4248 4356 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4249 4357 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4250 4358 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4251 4359 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4252 4360 3.555956 CCTCCGTTCCAAAATAGATGACG 59.444 47.826 0.00 0.00 0.00 4.35
4253 4361 2.933906 TCCGTTCCAAAATAGATGACGC 59.066 45.455 0.00 0.00 0.00 5.19
4254 4362 2.675844 CCGTTCCAAAATAGATGACGCA 59.324 45.455 0.00 0.00 0.00 5.24
4255 4363 3.126171 CCGTTCCAAAATAGATGACGCAA 59.874 43.478 0.00 0.00 0.00 4.85
4256 4364 4.088648 CGTTCCAAAATAGATGACGCAAC 58.911 43.478 0.00 0.00 0.00 4.17
4257 4365 4.142902 CGTTCCAAAATAGATGACGCAACT 60.143 41.667 0.00 0.00 0.00 3.16
4258 4366 5.616866 CGTTCCAAAATAGATGACGCAACTT 60.617 40.000 0.00 0.00 0.00 2.66
4259 4367 5.957842 TCCAAAATAGATGACGCAACTTT 57.042 34.783 0.00 0.00 0.00 2.66
4260 4368 5.698832 TCCAAAATAGATGACGCAACTTTG 58.301 37.500 0.00 0.00 0.00 2.77
4307 4415 5.425941 GCAAAGTTGCGTCATCTATTTTG 57.574 39.130 0.00 0.00 45.11 2.44
4308 4416 4.324402 GCAAAGTTGCGTCATCTATTTTGG 59.676 41.667 0.00 0.00 45.11 3.28
4309 4417 5.698832 CAAAGTTGCGTCATCTATTTTGGA 58.301 37.500 0.00 0.00 0.00 3.53
4310 4418 5.957842 AAGTTGCGTCATCTATTTTGGAA 57.042 34.783 0.00 0.00 0.00 3.53
4311 4419 5.296813 AGTTGCGTCATCTATTTTGGAAC 57.703 39.130 0.00 0.00 0.00 3.62
4312 4420 4.088648 GTTGCGTCATCTATTTTGGAACG 58.911 43.478 0.00 0.00 0.00 3.95
4313 4421 2.675844 TGCGTCATCTATTTTGGAACGG 59.324 45.455 0.00 0.00 0.00 4.44
4314 4422 2.933906 GCGTCATCTATTTTGGAACGGA 59.066 45.455 0.00 0.00 0.00 4.69
4315 4423 3.001330 GCGTCATCTATTTTGGAACGGAG 59.999 47.826 0.00 0.00 0.00 4.63
4316 4424 3.555956 CGTCATCTATTTTGGAACGGAGG 59.444 47.826 0.00 0.00 0.00 4.30
4317 4425 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4318 4426 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4337 4445 6.206438 GGAGGGAGTATAAGTTTAGTCCTACG 59.794 46.154 13.85 0.00 40.28 3.51
4338 4446 6.667661 AGGGAGTATAAGTTTAGTCCTACGT 58.332 40.000 13.85 0.00 40.28 3.57
4344 4452 9.852091 AGTATAAGTTTAGTCCTACGTTTGAAG 57.148 33.333 0.00 0.00 0.00 3.02
4596 4839 5.883673 TGTATGTAGGATTTGCTTTGGGTAC 59.116 40.000 0.00 0.00 0.00 3.34
4600 4843 3.606687 AGGATTTGCTTTGGGTACTACG 58.393 45.455 0.00 0.00 0.00 3.51
4662 4905 8.212312 TGAGTCTAGTCTCGAAAAGAGGTATAT 58.788 37.037 11.59 0.00 46.82 0.86
4663 4906 9.709495 GAGTCTAGTCTCGAAAAGAGGTATATA 57.291 37.037 1.13 0.00 46.82 0.86
4748 5116 2.751259 TGACATTGCTCTCAATTGGCTC 59.249 45.455 5.42 0.00 40.74 4.70
4791 5159 6.264518 CACTTGTGTTCCACCTTTATACCTTT 59.735 38.462 0.00 0.00 32.73 3.11
4824 5192 7.043192 GGCATTGTTCATTGTGTTTGATATAGC 60.043 37.037 0.00 0.00 0.00 2.97
4839 5207 4.592778 TGATATAGCTAACCACTCATGCCA 59.407 41.667 0.00 0.00 0.00 4.92
4895 5263 8.286191 TGGTTTTTCATTGCCTGTTTATTTTT 57.714 26.923 0.00 0.00 0.00 1.94
4905 5273 6.919721 TGCCTGTTTATTTTTGTCAGGTATC 58.080 36.000 10.49 0.00 44.99 2.24
5252 5622 1.784301 TTCCGATTGCAGTCCCCCAA 61.784 55.000 3.33 0.00 0.00 4.12
5341 5711 5.761726 AGTTACACTTACGAAAGGGGAAAAG 59.238 40.000 0.00 0.00 40.74 2.27
5369 5739 9.515226 AGAGTAAGACCAAAATTTTGCTATACA 57.485 29.630 22.90 5.55 36.86 2.29
5427 5797 1.536331 GAACCGTCAATTTAACCGCCA 59.464 47.619 0.00 0.00 0.00 5.69
5504 5874 2.352421 CGAAGTGGAAGTAAAGCCGAGA 60.352 50.000 0.00 0.00 0.00 4.04
5514 5884 3.449018 AGTAAAGCCGAGACACTGATGAT 59.551 43.478 0.00 0.00 0.00 2.45
5628 5998 7.876068 TGAAACTGTGGATTCGTTCTAAATACT 59.124 33.333 0.00 0.00 0.00 2.12
5629 5999 8.617290 AAACTGTGGATTCGTTCTAAATACTT 57.383 30.769 0.00 0.00 0.00 2.24
5630 6000 7.596749 ACTGTGGATTCGTTCTAAATACTTG 57.403 36.000 0.00 0.00 0.00 3.16
5631 6001 7.383687 ACTGTGGATTCGTTCTAAATACTTGA 58.616 34.615 0.00 0.00 0.00 3.02
5651 6021 5.772393 TGATACTTGATACAAACCTGGGT 57.228 39.130 0.00 0.00 0.00 4.51
5769 6158 7.342194 CGAAAGTTGTAATCTCTCGAACAAAA 58.658 34.615 0.00 0.00 33.92 2.44
5770 6159 7.527516 CGAAAGTTGTAATCTCTCGAACAAAAG 59.472 37.037 0.00 0.00 33.92 2.27
5772 6161 7.787725 AGTTGTAATCTCTCGAACAAAAGTT 57.212 32.000 0.00 0.00 33.92 2.66
5773 6162 7.630924 AGTTGTAATCTCTCGAACAAAAGTTG 58.369 34.615 0.00 0.00 33.92 3.16
5774 6163 5.985781 TGTAATCTCTCGAACAAAAGTTGC 58.014 37.500 0.00 0.00 0.00 4.17
5848 6237 3.838120 TCATGTGTAGTTTGCTCTCTCG 58.162 45.455 0.00 0.00 0.00 4.04
5922 6311 9.929180 ACACACTGGCACTATATTAGTATTATG 57.071 33.333 0.00 0.00 37.23 1.90
6017 6517 0.329596 GATCTGCTCCCCAACCAAGT 59.670 55.000 0.00 0.00 0.00 3.16
6049 6549 0.880278 CCGTAATCGAGCATGTGGGG 60.880 60.000 0.00 0.00 39.71 4.96
6050 6550 0.880278 CGTAATCGAGCATGTGGGGG 60.880 60.000 0.00 0.00 39.71 5.40
6082 6586 5.052502 CGACGCTAAGCTAAACTAAAGTAGC 60.053 44.000 0.00 0.00 42.56 3.58
6220 6756 3.200593 CACAGCTGCAGCCGATCC 61.201 66.667 34.39 6.88 43.38 3.36
6281 6817 1.071699 GCCTGTATTATTGCCCGAGGA 59.928 52.381 0.00 0.00 0.00 3.71
6329 6865 5.018539 ACATATACTGGAGCGCAACTAAA 57.981 39.130 11.47 0.00 0.00 1.85
6464 7000 1.526887 ACACGTTGCTTCACGATTCTG 59.473 47.619 10.08 1.83 43.15 3.02
6465 7001 0.512952 ACGTTGCTTCACGATTCTGC 59.487 50.000 10.08 0.00 43.15 4.26
6483 7019 2.031012 TCAGACTGGCCAAGTGCG 59.969 61.111 7.01 0.00 40.07 5.34
6484 7020 2.281070 CAGACTGGCCAAGTGCGT 60.281 61.111 7.01 0.00 40.07 5.24
6485 7021 2.281070 AGACTGGCCAAGTGCGTG 60.281 61.111 7.01 0.00 40.07 5.34
6486 7022 4.030452 GACTGGCCAAGTGCGTGC 62.030 66.667 7.01 0.00 40.07 5.34
6487 7023 4.569180 ACTGGCCAAGTGCGTGCT 62.569 61.111 7.01 0.00 42.61 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 5.717119 ATAGTAGATGGCTGGAGGTTTTT 57.283 39.130 0.00 0.00 0.00 1.94
6 7 5.717119 AATAGTAGATGGCTGGAGGTTTT 57.283 39.130 0.00 0.00 0.00 2.43
7 8 6.592870 GTTAATAGTAGATGGCTGGAGGTTT 58.407 40.000 0.00 0.00 0.00 3.27
8 9 5.221461 CGTTAATAGTAGATGGCTGGAGGTT 60.221 44.000 0.00 0.00 0.00 3.50
9 10 4.281182 CGTTAATAGTAGATGGCTGGAGGT 59.719 45.833 0.00 0.00 0.00 3.85
10 11 4.810790 CGTTAATAGTAGATGGCTGGAGG 58.189 47.826 0.00 0.00 0.00 4.30
11 12 4.238514 GCGTTAATAGTAGATGGCTGGAG 58.761 47.826 0.00 0.00 0.00 3.86
12 13 3.639561 TGCGTTAATAGTAGATGGCTGGA 59.360 43.478 0.00 0.00 0.00 3.86
13 14 3.741344 GTGCGTTAATAGTAGATGGCTGG 59.259 47.826 0.00 0.00 0.00 4.85
14 15 4.368315 TGTGCGTTAATAGTAGATGGCTG 58.632 43.478 0.00 0.00 0.00 4.85
15 16 4.665833 TGTGCGTTAATAGTAGATGGCT 57.334 40.909 0.00 0.00 0.00 4.75
16 17 4.809426 ACTTGTGCGTTAATAGTAGATGGC 59.191 41.667 0.00 0.00 0.00 4.40
17 18 5.234329 CCACTTGTGCGTTAATAGTAGATGG 59.766 44.000 0.00 0.00 0.00 3.51
18 19 6.019801 GTCCACTTGTGCGTTAATAGTAGATG 60.020 42.308 0.00 0.00 0.00 2.90
19 20 6.040878 GTCCACTTGTGCGTTAATAGTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
20 21 5.047872 TGTCCACTTGTGCGTTAATAGTAGA 60.048 40.000 0.00 0.00 0.00 2.59
21 22 5.165676 TGTCCACTTGTGCGTTAATAGTAG 58.834 41.667 0.00 0.00 0.00 2.57
22 23 5.136816 TGTCCACTTGTGCGTTAATAGTA 57.863 39.130 0.00 0.00 0.00 1.82
23 24 3.994392 CTGTCCACTTGTGCGTTAATAGT 59.006 43.478 0.00 0.00 0.00 2.12
24 25 3.370978 CCTGTCCACTTGTGCGTTAATAG 59.629 47.826 0.00 0.00 0.00 1.73
25 26 3.244284 ACCTGTCCACTTGTGCGTTAATA 60.244 43.478 0.00 0.00 0.00 0.98
26 27 2.151202 CCTGTCCACTTGTGCGTTAAT 58.849 47.619 0.00 0.00 0.00 1.40
27 28 1.134340 ACCTGTCCACTTGTGCGTTAA 60.134 47.619 0.00 0.00 0.00 2.01
28 29 0.466543 ACCTGTCCACTTGTGCGTTA 59.533 50.000 0.00 0.00 0.00 3.18
29 30 1.095228 CACCTGTCCACTTGTGCGTT 61.095 55.000 0.00 0.00 0.00 4.84
30 31 1.523711 CACCTGTCCACTTGTGCGT 60.524 57.895 0.00 0.00 0.00 5.24
31 32 2.896801 GCACCTGTCCACTTGTGCG 61.897 63.158 7.94 0.00 43.83 5.34
32 33 3.034030 GCACCTGTCCACTTGTGC 58.966 61.111 7.94 7.94 46.09 4.57
33 34 1.789078 GCAGCACCTGTCCACTTGTG 61.789 60.000 0.00 0.00 33.43 3.33
34 35 1.526917 GCAGCACCTGTCCACTTGT 60.527 57.895 0.00 0.00 33.43 3.16
35 36 1.526686 TGCAGCACCTGTCCACTTG 60.527 57.895 0.00 0.00 33.43 3.16
36 37 1.526917 GTGCAGCACCTGTCCACTT 60.527 57.895 15.27 0.00 33.43 3.16
37 38 2.111878 GTGCAGCACCTGTCCACT 59.888 61.111 15.27 0.00 33.43 4.00
38 39 1.789078 CTTGTGCAGCACCTGTCCAC 61.789 60.000 23.06 0.00 33.43 4.02
39 40 1.526686 CTTGTGCAGCACCTGTCCA 60.527 57.895 23.06 0.00 33.43 4.02
40 41 1.526917 ACTTGTGCAGCACCTGTCC 60.527 57.895 23.06 0.00 33.43 4.02
41 42 1.650912 CACTTGTGCAGCACCTGTC 59.349 57.895 23.06 0.00 33.43 3.51
42 43 1.825191 CCACTTGTGCAGCACCTGT 60.825 57.895 23.06 17.40 33.43 4.00
43 44 3.036577 CCACTTGTGCAGCACCTG 58.963 61.111 23.06 16.77 32.73 4.00
44 45 2.908940 GCCACTTGTGCAGCACCT 60.909 61.111 23.06 2.27 32.73 4.00
45 46 3.218470 TGCCACTTGTGCAGCACC 61.218 61.111 23.06 6.67 34.05 5.01
50 51 0.740149 CTTTGACTGCCACTTGTGCA 59.260 50.000 0.00 0.00 37.17 4.57
51 52 0.595825 GCTTTGACTGCCACTTGTGC 60.596 55.000 0.00 0.00 0.00 4.57
52 53 0.740149 TGCTTTGACTGCCACTTGTG 59.260 50.000 0.00 0.00 0.00 3.33
53 54 0.740737 GTGCTTTGACTGCCACTTGT 59.259 50.000 0.00 0.00 0.00 3.16
54 55 0.740149 TGTGCTTTGACTGCCACTTG 59.260 50.000 0.00 0.00 0.00 3.16
55 56 1.027357 CTGTGCTTTGACTGCCACTT 58.973 50.000 0.00 0.00 0.00 3.16
56 57 1.450531 GCTGTGCTTTGACTGCCACT 61.451 55.000 0.00 0.00 35.40 4.00
57 58 1.008079 GCTGTGCTTTGACTGCCAC 60.008 57.895 0.00 0.00 35.40 5.01
58 59 1.152902 AGCTGTGCTTTGACTGCCA 60.153 52.632 0.00 0.00 40.62 4.92
59 60 1.285023 CAGCTGTGCTTTGACTGCC 59.715 57.895 5.25 0.00 40.62 4.85
60 61 1.285023 CCAGCTGTGCTTTGACTGC 59.715 57.895 13.81 0.00 36.40 4.40
61 62 1.285023 GCCAGCTGTGCTTTGACTG 59.715 57.895 13.81 0.00 36.40 3.51
62 63 0.752743 TTGCCAGCTGTGCTTTGACT 60.753 50.000 22.36 0.00 36.40 3.41
63 64 0.595825 GTTGCCAGCTGTGCTTTGAC 60.596 55.000 22.36 14.07 36.40 3.18
64 65 1.735360 GTTGCCAGCTGTGCTTTGA 59.265 52.632 22.36 5.18 36.40 2.69
65 66 1.659335 CGTTGCCAGCTGTGCTTTG 60.659 57.895 22.36 11.50 36.40 2.77
66 67 2.723746 CGTTGCCAGCTGTGCTTT 59.276 55.556 22.36 0.00 36.40 3.51
67 68 3.289834 CCGTTGCCAGCTGTGCTT 61.290 61.111 22.36 0.00 36.40 3.91
73 74 3.890936 GAGTCAGCCGTTGCCAGCT 62.891 63.158 0.00 0.00 40.89 4.24
74 75 3.426568 GAGTCAGCCGTTGCCAGC 61.427 66.667 0.00 0.00 38.69 4.85
75 76 3.114616 CGAGTCAGCCGTTGCCAG 61.115 66.667 0.00 0.00 38.69 4.85
76 77 4.680237 CCGAGTCAGCCGTTGCCA 62.680 66.667 0.00 0.00 38.69 4.92
87 88 0.884704 TTTGCTGACTTGGCCGAGTC 60.885 55.000 37.12 37.12 44.97 3.36
88 89 0.250901 ATTTGCTGACTTGGCCGAGT 60.251 50.000 26.51 26.51 0.00 4.18
89 90 1.398390 GTATTTGCTGACTTGGCCGAG 59.602 52.381 19.26 19.26 0.00 4.63
90 91 1.448985 GTATTTGCTGACTTGGCCGA 58.551 50.000 0.00 0.00 0.00 5.54
91 92 0.096976 CGTATTTGCTGACTTGGCCG 59.903 55.000 0.00 0.00 0.00 6.13
92 93 1.165270 ACGTATTTGCTGACTTGGCC 58.835 50.000 0.00 0.00 0.00 5.36
93 94 2.223044 GCTACGTATTTGCTGACTTGGC 60.223 50.000 0.00 0.00 0.00 4.52
94 95 3.262420 AGCTACGTATTTGCTGACTTGG 58.738 45.455 6.98 0.00 35.54 3.61
95 96 3.926527 TGAGCTACGTATTTGCTGACTTG 59.073 43.478 12.05 0.00 37.16 3.16
96 97 4.188247 TGAGCTACGTATTTGCTGACTT 57.812 40.909 12.05 0.00 37.16 3.01
97 98 3.868757 TGAGCTACGTATTTGCTGACT 57.131 42.857 12.05 0.00 37.16 3.41
98 99 5.470845 AATTGAGCTACGTATTTGCTGAC 57.529 39.130 12.05 0.78 37.16 3.51
99 100 4.267690 CGAATTGAGCTACGTATTTGCTGA 59.732 41.667 12.05 1.65 37.16 4.26
100 101 4.032900 ACGAATTGAGCTACGTATTTGCTG 59.967 41.667 12.05 0.67 37.16 4.41
101 102 4.181578 ACGAATTGAGCTACGTATTTGCT 58.818 39.130 7.47 7.47 40.02 3.91
102 103 4.516092 ACGAATTGAGCTACGTATTTGC 57.484 40.909 0.00 0.00 37.22 3.68
104 105 9.565213 GGTATATACGAATTGAGCTACGTATTT 57.435 33.333 19.20 15.78 45.29 1.40
105 106 7.907045 CGGTATATACGAATTGAGCTACGTATT 59.093 37.037 19.20 13.10 45.29 1.89
107 108 6.589907 TCGGTATATACGAATTGAGCTACGTA 59.410 38.462 6.79 0.00 43.37 3.57
108 109 5.409520 TCGGTATATACGAATTGAGCTACGT 59.590 40.000 6.79 0.00 41.66 3.57
109 110 5.731723 GTCGGTATATACGAATTGAGCTACG 59.268 44.000 6.79 0.95 42.55 3.51
110 111 6.026513 GGTCGGTATATACGAATTGAGCTAC 58.973 44.000 6.79 0.00 42.55 3.58
111 112 5.706833 TGGTCGGTATATACGAATTGAGCTA 59.293 40.000 6.79 0.05 42.55 3.32
112 113 4.521639 TGGTCGGTATATACGAATTGAGCT 59.478 41.667 6.79 0.00 42.55 4.09
113 114 4.801891 TGGTCGGTATATACGAATTGAGC 58.198 43.478 6.79 9.03 42.55 4.26
114 115 6.921857 ACTTTGGTCGGTATATACGAATTGAG 59.078 38.462 6.79 2.88 42.55 3.02
115 116 6.698329 CACTTTGGTCGGTATATACGAATTGA 59.302 38.462 6.79 0.00 42.55 2.57
116 117 6.698329 TCACTTTGGTCGGTATATACGAATTG 59.302 38.462 6.79 0.00 42.55 2.32
117 118 6.808829 TCACTTTGGTCGGTATATACGAATT 58.191 36.000 6.79 0.00 42.55 2.17
118 119 6.395426 TCACTTTGGTCGGTATATACGAAT 57.605 37.500 6.79 0.00 42.55 3.34
119 120 5.833406 TCACTTTGGTCGGTATATACGAA 57.167 39.130 6.79 0.00 42.55 3.85
120 121 5.450412 GGTTCACTTTGGTCGGTATATACGA 60.450 44.000 6.79 5.27 38.13 3.43
121 122 4.741676 GGTTCACTTTGGTCGGTATATACG 59.258 45.833 6.79 3.08 0.00 3.06
122 123 5.052481 GGGTTCACTTTGGTCGGTATATAC 58.948 45.833 4.14 4.14 0.00 1.47
123 124 4.101430 GGGGTTCACTTTGGTCGGTATATA 59.899 45.833 0.00 0.00 0.00 0.86
124 125 3.118149 GGGGTTCACTTTGGTCGGTATAT 60.118 47.826 0.00 0.00 0.00 0.86
125 126 2.236893 GGGGTTCACTTTGGTCGGTATA 59.763 50.000 0.00 0.00 0.00 1.47
126 127 1.003928 GGGGTTCACTTTGGTCGGTAT 59.996 52.381 0.00 0.00 0.00 2.73
127 128 0.397564 GGGGTTCACTTTGGTCGGTA 59.602 55.000 0.00 0.00 0.00 4.02
128 129 1.149854 GGGGTTCACTTTGGTCGGT 59.850 57.895 0.00 0.00 0.00 4.69
129 130 1.602605 GGGGGTTCACTTTGGTCGG 60.603 63.158 0.00 0.00 0.00 4.79
130 131 0.889186 CAGGGGGTTCACTTTGGTCG 60.889 60.000 0.00 0.00 0.00 4.79
131 132 1.179174 GCAGGGGGTTCACTTTGGTC 61.179 60.000 0.00 0.00 0.00 4.02
132 133 1.152546 GCAGGGGGTTCACTTTGGT 60.153 57.895 0.00 0.00 0.00 3.67
133 134 2.268076 CGCAGGGGGTTCACTTTGG 61.268 63.158 0.00 0.00 0.00 3.28
134 135 2.919494 GCGCAGGGGGTTCACTTTG 61.919 63.158 0.30 0.00 0.00 2.77
135 136 2.597510 GCGCAGGGGGTTCACTTT 60.598 61.111 0.30 0.00 0.00 2.66
136 137 3.429372 TTGCGCAGGGGGTTCACTT 62.429 57.895 11.31 0.00 0.00 3.16
137 138 3.850098 CTTGCGCAGGGGGTTCACT 62.850 63.158 12.39 0.00 0.00 3.41
138 139 2.741486 TACTTGCGCAGGGGGTTCAC 62.741 60.000 24.27 0.00 0.00 3.18
139 140 2.521451 TACTTGCGCAGGGGGTTCA 61.521 57.895 24.27 0.00 0.00 3.18
140 141 2.038837 GTACTTGCGCAGGGGGTTC 61.039 63.158 24.27 9.56 0.00 3.62
141 142 2.033602 GTACTTGCGCAGGGGGTT 59.966 61.111 24.27 4.97 0.00 4.11
142 143 2.602676 ATGTACTTGCGCAGGGGGT 61.603 57.895 24.27 16.58 0.00 4.95
143 144 2.114670 CATGTACTTGCGCAGGGGG 61.115 63.158 24.27 11.74 0.00 5.40
144 145 2.114670 CCATGTACTTGCGCAGGGG 61.115 63.158 24.27 10.80 33.41 4.79
145 146 1.078497 TCCATGTACTTGCGCAGGG 60.078 57.895 24.27 16.70 37.84 4.45
146 147 0.391661 AGTCCATGTACTTGCGCAGG 60.392 55.000 19.01 19.01 0.00 4.85
147 148 0.723414 CAGTCCATGTACTTGCGCAG 59.277 55.000 11.31 7.81 0.00 5.18
148 149 0.034756 ACAGTCCATGTACTTGCGCA 59.965 50.000 5.66 5.66 41.60 6.09
149 150 2.004583 TACAGTCCATGTACTTGCGC 57.995 50.000 0.00 0.00 43.66 6.09
150 151 4.259810 CGAAATACAGTCCATGTACTTGCG 60.260 45.833 3.24 0.00 47.00 4.85
151 152 4.034048 CCGAAATACAGTCCATGTACTTGC 59.966 45.833 3.24 0.00 47.00 4.01
152 153 4.570772 CCCGAAATACAGTCCATGTACTTG 59.429 45.833 1.78 1.78 47.00 3.16
153 154 4.224370 ACCCGAAATACAGTCCATGTACTT 59.776 41.667 0.00 0.00 47.00 2.24
154 155 3.773119 ACCCGAAATACAGTCCATGTACT 59.227 43.478 0.00 0.00 47.00 2.73
155 156 4.133013 ACCCGAAATACAGTCCATGTAC 57.867 45.455 0.00 0.00 47.00 2.90
157 158 5.367945 AATACCCGAAATACAGTCCATGT 57.632 39.130 0.00 0.00 46.45 3.21
158 159 6.317642 TCAAAATACCCGAAATACAGTCCATG 59.682 38.462 0.00 0.00 0.00 3.66
159 160 6.419791 TCAAAATACCCGAAATACAGTCCAT 58.580 36.000 0.00 0.00 0.00 3.41
160 161 5.806818 TCAAAATACCCGAAATACAGTCCA 58.193 37.500 0.00 0.00 0.00 4.02
161 162 6.373495 ACTTCAAAATACCCGAAATACAGTCC 59.627 38.462 0.00 0.00 0.00 3.85
162 163 7.373778 ACTTCAAAATACCCGAAATACAGTC 57.626 36.000 0.00 0.00 0.00 3.51
163 164 8.098912 ACTACTTCAAAATACCCGAAATACAGT 58.901 33.333 0.00 0.00 0.00 3.55
164 165 8.388103 CACTACTTCAAAATACCCGAAATACAG 58.612 37.037 0.00 0.00 0.00 2.74
165 166 7.334921 CCACTACTTCAAAATACCCGAAATACA 59.665 37.037 0.00 0.00 0.00 2.29
166 167 7.335171 ACCACTACTTCAAAATACCCGAAATAC 59.665 37.037 0.00 0.00 0.00 1.89
167 168 7.396418 ACCACTACTTCAAAATACCCGAAATA 58.604 34.615 0.00 0.00 0.00 1.40
168 169 6.243148 ACCACTACTTCAAAATACCCGAAAT 58.757 36.000 0.00 0.00 0.00 2.17
169 170 5.623169 ACCACTACTTCAAAATACCCGAAA 58.377 37.500 0.00 0.00 0.00 3.46
170 171 5.231702 ACCACTACTTCAAAATACCCGAA 57.768 39.130 0.00 0.00 0.00 4.30
171 172 4.895668 ACCACTACTTCAAAATACCCGA 57.104 40.909 0.00 0.00 0.00 5.14
172 173 5.727434 AGTACCACTACTTCAAAATACCCG 58.273 41.667 0.00 0.00 27.62 5.28
173 174 9.159364 CTTAAGTACCACTACTTCAAAATACCC 57.841 37.037 0.00 0.00 41.51 3.69
174 175 9.716531 ACTTAAGTACCACTACTTCAAAATACC 57.283 33.333 6.26 0.00 41.51 2.73
177 178 9.269453 GACACTTAAGTACCACTACTTCAAAAT 57.731 33.333 8.04 0.00 41.51 1.82
178 179 8.259411 TGACACTTAAGTACCACTACTTCAAAA 58.741 33.333 8.04 0.00 41.51 2.44
179 180 7.784037 TGACACTTAAGTACCACTACTTCAAA 58.216 34.615 8.04 0.00 41.51 2.69
180 181 7.350744 TGACACTTAAGTACCACTACTTCAA 57.649 36.000 8.04 0.00 41.51 2.69
181 182 6.516194 GCTGACACTTAAGTACCACTACTTCA 60.516 42.308 8.04 0.11 41.51 3.02
182 183 5.862860 GCTGACACTTAAGTACCACTACTTC 59.137 44.000 8.04 0.00 41.51 3.01
183 184 5.539193 AGCTGACACTTAAGTACCACTACTT 59.461 40.000 8.04 0.00 44.14 2.24
184 185 5.078256 AGCTGACACTTAAGTACCACTACT 58.922 41.667 8.04 2.79 34.38 2.57
185 186 5.388408 AGCTGACACTTAAGTACCACTAC 57.612 43.478 8.04 0.74 0.00 2.73
186 187 5.125097 GCTAGCTGACACTTAAGTACCACTA 59.875 44.000 8.04 11.18 0.00 2.74
187 188 4.082136 GCTAGCTGACACTTAAGTACCACT 60.082 45.833 8.04 10.74 0.00 4.00
188 189 4.082136 AGCTAGCTGACACTTAAGTACCAC 60.082 45.833 18.57 1.17 0.00 4.16
189 190 4.087182 AGCTAGCTGACACTTAAGTACCA 58.913 43.478 18.57 8.21 0.00 3.25
190 191 4.158025 TGAGCTAGCTGACACTTAAGTACC 59.842 45.833 24.99 2.40 0.00 3.34
191 192 5.312120 TGAGCTAGCTGACACTTAAGTAC 57.688 43.478 24.99 2.88 0.00 2.73
192 193 5.477291 ACTTGAGCTAGCTGACACTTAAGTA 59.523 40.000 24.99 0.00 37.25 2.24
193 194 4.282195 ACTTGAGCTAGCTGACACTTAAGT 59.718 41.667 24.99 10.17 35.05 2.24
194 195 4.815269 ACTTGAGCTAGCTGACACTTAAG 58.185 43.478 24.99 9.45 33.37 1.85
195 196 4.873746 ACTTGAGCTAGCTGACACTTAA 57.126 40.909 24.99 0.00 0.00 1.85
196 197 4.873746 AACTTGAGCTAGCTGACACTTA 57.126 40.909 24.99 0.00 0.00 2.24
197 198 3.760580 AACTTGAGCTAGCTGACACTT 57.239 42.857 24.99 5.90 0.00 3.16
198 199 3.760580 AAACTTGAGCTAGCTGACACT 57.239 42.857 24.99 0.00 0.00 3.55
199 200 3.561725 ACAAAACTTGAGCTAGCTGACAC 59.438 43.478 24.99 8.22 0.00 3.67
200 201 3.561310 CACAAAACTTGAGCTAGCTGACA 59.439 43.478 24.99 12.43 0.00 3.58
201 202 3.809832 TCACAAAACTTGAGCTAGCTGAC 59.190 43.478 24.99 9.47 0.00 3.51
202 203 3.809832 GTCACAAAACTTGAGCTAGCTGA 59.190 43.478 24.99 12.04 0.00 4.26
203 204 3.058639 GGTCACAAAACTTGAGCTAGCTG 60.059 47.826 24.99 10.77 38.26 4.24
204 205 3.142174 GGTCACAAAACTTGAGCTAGCT 58.858 45.455 19.45 19.45 38.26 3.32
205 206 3.544356 GGTCACAAAACTTGAGCTAGC 57.456 47.619 6.62 6.62 38.26 3.42
209 210 3.877508 ACTGTAGGTCACAAAACTTGAGC 59.122 43.478 0.00 0.00 40.99 4.26
210 211 5.116180 TCACTGTAGGTCACAAAACTTGAG 58.884 41.667 0.00 0.00 36.48 3.02
211 212 5.092554 TCACTGTAGGTCACAAAACTTGA 57.907 39.130 0.00 0.00 36.48 3.02
212 213 5.811399 TTCACTGTAGGTCACAAAACTTG 57.189 39.130 0.00 0.00 36.48 3.16
213 214 7.404671 AAATTCACTGTAGGTCACAAAACTT 57.595 32.000 0.00 0.00 36.48 2.66
214 215 7.404671 AAAATTCACTGTAGGTCACAAAACT 57.595 32.000 0.00 0.00 36.48 2.66
215 216 7.973944 AGAAAAATTCACTGTAGGTCACAAAAC 59.026 33.333 0.00 0.00 36.48 2.43
216 217 8.062065 AGAAAAATTCACTGTAGGTCACAAAA 57.938 30.769 0.00 0.00 36.48 2.44
217 218 7.556275 AGAGAAAAATTCACTGTAGGTCACAAA 59.444 33.333 0.00 0.00 36.48 2.83
218 219 7.054124 AGAGAAAAATTCACTGTAGGTCACAA 58.946 34.615 0.00 0.00 36.48 3.33
219 220 6.591935 AGAGAAAAATTCACTGTAGGTCACA 58.408 36.000 0.00 0.00 35.30 3.58
220 221 7.873505 AGTAGAGAAAAATTCACTGTAGGTCAC 59.126 37.037 1.09 0.00 32.75 3.67
221 222 7.963532 AGTAGAGAAAAATTCACTGTAGGTCA 58.036 34.615 1.09 0.00 32.75 4.02
222 223 8.834749 AAGTAGAGAAAAATTCACTGTAGGTC 57.165 34.615 1.09 0.00 32.75 3.85
223 224 9.930693 CTAAGTAGAGAAAAATTCACTGTAGGT 57.069 33.333 1.09 0.00 32.75 3.08
224 225 9.372369 CCTAAGTAGAGAAAAATTCACTGTAGG 57.628 37.037 1.09 5.41 32.75 3.18
227 228 9.847224 TTTCCTAAGTAGAGAAAAATTCACTGT 57.153 29.630 1.09 0.00 32.75 3.55
235 236 9.901172 AGAGTTGTTTTCCTAAGTAGAGAAAAA 57.099 29.630 12.40 4.13 40.20 1.94
236 237 9.326413 CAGAGTTGTTTTCCTAAGTAGAGAAAA 57.674 33.333 9.07 9.07 37.20 2.29
237 238 8.483758 ACAGAGTTGTTTTCCTAAGTAGAGAAA 58.516 33.333 0.00 0.00 32.28 2.52
238 239 8.019656 ACAGAGTTGTTTTCCTAAGTAGAGAA 57.980 34.615 0.00 0.00 32.28 2.87
239 240 7.598759 ACAGAGTTGTTTTCCTAAGTAGAGA 57.401 36.000 0.00 0.00 32.28 3.10
240 241 9.930693 ATTACAGAGTTGTTTTCCTAAGTAGAG 57.069 33.333 0.00 0.00 38.76 2.43
249 250 9.406828 GGTTATGAAATTACAGAGTTGTTTTCC 57.593 33.333 0.00 0.00 34.99 3.13
267 268 5.005094 CCTCGGTTTGGTTAAGGTTATGAA 58.995 41.667 0.00 0.00 0.00 2.57
274 275 2.551032 GACAACCTCGGTTTGGTTAAGG 59.449 50.000 0.00 0.00 45.05 2.69
282 283 5.009310 GGAAAAAGTATGACAACCTCGGTTT 59.991 40.000 0.00 0.00 36.00 3.27
284 285 4.070009 GGAAAAAGTATGACAACCTCGGT 58.930 43.478 0.00 0.00 0.00 4.69
286 287 4.069304 TGGGAAAAAGTATGACAACCTCG 58.931 43.478 0.00 0.00 0.00 4.63
291 292 4.462483 GCCTGATGGGAAAAAGTATGACAA 59.538 41.667 0.00 0.00 37.23 3.18
293 294 3.381590 GGCCTGATGGGAAAAAGTATGAC 59.618 47.826 0.00 0.00 37.23 3.06
312 313 0.108281 GGACGAAAGACCACTAGGCC 60.108 60.000 0.00 0.00 45.48 5.19
322 323 1.481871 ATAGGCGAAGGGACGAAAGA 58.518 50.000 0.00 0.00 35.09 2.52
406 407 3.293337 CATGCATTTCATTCCCAGGAGA 58.707 45.455 0.00 0.00 31.79 3.71
459 460 5.130477 AGTGAAAGAGTGGTCTACTTCCAAA 59.870 40.000 0.00 0.00 40.53 3.28
470 471 0.882042 CTGCGCAGTGAAAGAGTGGT 60.882 55.000 29.24 0.00 0.00 4.16
485 486 5.613358 ACAGACTAAAAGAAAATCCTGCG 57.387 39.130 0.00 0.00 0.00 5.18
487 488 6.655003 TGGCTACAGACTAAAAGAAAATCCTG 59.345 38.462 0.00 0.00 0.00 3.86
524 525 2.550830 ACCCGGATCATGTCATTAGC 57.449 50.000 0.73 0.00 0.00 3.09
653 654 5.610398 TGTTGAGATATGGTATGCGACAAT 58.390 37.500 0.00 0.00 0.00 2.71
658 660 5.121298 CCAATCTGTTGAGATATGGTATGCG 59.879 44.000 0.00 0.00 38.03 4.73
683 685 4.388469 TGTACGTGCGGTAGAAAAATTACC 59.612 41.667 0.00 0.00 37.74 2.85
696 698 0.365523 CGAAATCACTGTACGTGCGG 59.634 55.000 11.24 11.24 43.46 5.69
701 703 4.091365 TGAATTCAGCGAAATCACTGTACG 59.909 41.667 3.38 0.00 35.37 3.67
728 730 4.979204 CCGAATCGGCGGCTTATA 57.021 55.556 9.39 0.00 45.38 0.98
754 756 1.078918 GCTTTGGATTTGGGCTGGC 60.079 57.895 0.00 0.00 0.00 4.85
788 790 3.440151 GCCGTCGTATGGGCTAGA 58.560 61.111 0.00 0.00 45.93 2.43
815 834 0.534203 TGCCAGTTTCGTGGAGGAAC 60.534 55.000 0.00 0.00 40.44 3.62
816 835 0.400213 ATGCCAGTTTCGTGGAGGAA 59.600 50.000 0.00 0.00 40.44 3.36
817 836 0.400213 AATGCCAGTTTCGTGGAGGA 59.600 50.000 0.00 0.00 40.44 3.71
818 837 0.804989 GAATGCCAGTTTCGTGGAGG 59.195 55.000 0.00 0.00 40.44 4.30
819 838 0.804989 GGAATGCCAGTTTCGTGGAG 59.195 55.000 0.00 0.00 40.44 3.86
820 839 0.400213 AGGAATGCCAGTTTCGTGGA 59.600 50.000 0.00 0.00 40.44 4.02
821 840 0.804989 GAGGAATGCCAGTTTCGTGG 59.195 55.000 0.00 0.00 41.01 4.94
825 844 1.032114 CGGGGAGGAATGCCAGTTTC 61.032 60.000 0.00 0.00 36.29 2.78
952 973 1.522569 GTGGCGATTCTGGGTAGCT 59.477 57.895 0.00 0.00 0.00 3.32
1186 1210 0.609662 TAGGGTTTCGTTTCCTCGGG 59.390 55.000 0.00 0.00 32.46 5.14
1452 1482 3.013921 GCAAAATACCAATCAGACGGGA 58.986 45.455 0.00 0.00 0.00 5.14
1458 1488 5.484173 TCGCTAAGCAAAATACCAATCAG 57.516 39.130 0.00 0.00 0.00 2.90
1491 1521 4.006357 TACCGCGTCCCCAACCAC 62.006 66.667 4.92 0.00 0.00 4.16
1584 1614 1.109609 GTCCCACCCTACTTCCTACG 58.890 60.000 0.00 0.00 0.00 3.51
1599 1629 6.603201 TCTGAAATCCACTAAAATCATGTCCC 59.397 38.462 0.00 0.00 0.00 4.46
1696 1726 5.232202 GCTTCGATTTGTACGAATGATCTGA 59.768 40.000 13.24 1.12 46.01 3.27
1725 1775 4.123497 TCCGAAACATACAGGTCATCAG 57.877 45.455 0.00 0.00 0.00 2.90
1728 1778 4.162320 ACAGATCCGAAACATACAGGTCAT 59.838 41.667 0.00 0.00 0.00 3.06
1789 1839 4.020039 TCCCAAGCGATAACTAGTTTTGGA 60.020 41.667 26.88 13.96 36.56 3.53
1796 1846 2.169769 TGGGTTCCCAAGCGATAACTAG 59.830 50.000 8.26 0.00 32.48 2.57
2029 2079 6.147492 GCTTAGCATAGAGATCCATTGAACTG 59.853 42.308 0.00 0.00 0.00 3.16
2043 2093 3.068732 AGCATGAACTCGCTTAGCATAGA 59.931 43.478 4.70 0.00 33.81 1.98
2075 2125 0.256464 AGTTCCAAACCAACACCCGA 59.744 50.000 0.00 0.00 0.00 5.14
2077 2127 3.492337 TGATAGTTCCAAACCAACACCC 58.508 45.455 0.00 0.00 0.00 4.61
2105 2155 9.007901 AGAAGATGGCTGTATTTTATATGAAGC 57.992 33.333 0.00 0.00 0.00 3.86
2116 2166 4.081087 ACGGTAACAGAAGATGGCTGTATT 60.081 41.667 0.00 0.00 45.27 1.89
2125 2175 3.120321 TGTTGCACGGTAACAGAAGAT 57.880 42.857 4.05 0.00 33.43 2.40
2345 2395 9.555727 GTAGCTATCCTCCTAGATTATCTAGTG 57.444 40.741 23.00 16.04 43.76 2.74
2383 2433 4.702831 TCGCATGTCTATTGATAAAGCCA 58.297 39.130 0.00 0.00 0.00 4.75
2385 2435 5.084722 GCATCGCATGTCTATTGATAAAGC 58.915 41.667 0.00 0.00 0.00 3.51
2462 2512 2.070783 ACGTTAACTGCCCACATTACG 58.929 47.619 3.71 0.00 0.00 3.18
2479 2529 4.083377 ACAAACGTGGTAAACTTCAAACGT 60.083 37.500 0.00 0.00 45.26 3.99
2599 2649 7.881775 ATTTTGGGTCAGAGACAATAATACC 57.118 36.000 0.00 0.00 33.68 2.73
2668 2718 6.850752 TCTAGTAATCCACATGAGTTCACA 57.149 37.500 0.00 0.00 0.00 3.58
2673 2723 7.066142 ACTCTCATCTAGTAATCCACATGAGT 58.934 38.462 0.00 0.00 36.90 3.41
2798 2848 0.301687 GAGCCATTGTACGTGCGATG 59.698 55.000 22.86 22.86 0.00 3.84
2802 2852 1.982073 GCCAGAGCCATTGTACGTGC 61.982 60.000 0.00 0.00 0.00 5.34
2890 2940 7.998383 TGGCATAAGACAGGACACAAATATATT 59.002 33.333 0.00 0.00 0.00 1.28
2895 2945 4.032960 TGGCATAAGACAGGACACAAAT 57.967 40.909 0.00 0.00 0.00 2.32
2896 2946 3.500448 TGGCATAAGACAGGACACAAA 57.500 42.857 0.00 0.00 0.00 2.83
2986 3036 7.201696 GGTGTGTGTCCCAATAAGTGTATATTG 60.202 40.741 0.00 0.00 41.08 1.90
3134 3184 3.876914 ACAGCGTGTTTGAGAATTCAGAA 59.123 39.130 8.44 0.00 34.15 3.02
3208 3258 8.251026 AGCAGGAATATTGATCAATGCATATTG 58.749 33.333 27.59 18.71 44.03 1.90
3240 3290 2.173519 AGGTTCAATTCATGCCAGTGG 58.826 47.619 4.20 4.20 0.00 4.00
3356 3406 5.513233 AGATAACATTTCTCATGGTGCCTT 58.487 37.500 0.00 0.00 0.00 4.35
3361 3411 8.103305 ACAGTACAAGATAACATTTCTCATGGT 58.897 33.333 0.00 0.00 0.00 3.55
3495 3557 2.879103 ACAACCTATCAACCCACTGG 57.121 50.000 0.00 0.00 37.80 4.00
3502 3565 6.749118 GCATGAATCTCAAACAACCTATCAAC 59.251 38.462 0.00 0.00 0.00 3.18
3504 3567 5.945191 TGCATGAATCTCAAACAACCTATCA 59.055 36.000 0.00 0.00 0.00 2.15
3575 3638 7.065085 TGTCAAGCATCAAGTAGATTAAGAAGC 59.935 37.037 0.00 0.00 33.72 3.86
3578 3641 8.484641 CTTGTCAAGCATCAAGTAGATTAAGA 57.515 34.615 0.00 0.00 37.04 2.10
3619 3682 8.221944 ACCGAATGGGAAATTCTATAACCATAA 58.778 33.333 0.00 0.00 37.71 1.90
3638 3701 4.673311 CCGTTGAAAGTTACAAACCGAATG 59.327 41.667 0.00 0.00 0.00 2.67
3648 3711 3.628942 ACCCTTGAACCGTTGAAAGTTAC 59.371 43.478 0.00 0.00 0.00 2.50
3658 3721 0.250727 CATCCACACCCTTGAACCGT 60.251 55.000 0.00 0.00 0.00 4.83
3703 3766 3.320826 GGTTGACCTGTTATTGCACCTTT 59.679 43.478 0.00 0.00 0.00 3.11
3725 3788 3.793797 AAGTTCAAACTTTCCCAACGG 57.206 42.857 2.30 0.00 46.52 4.44
3762 3869 6.255887 CACCGAGAAGCTAAATCTTAACGATT 59.744 38.462 0.00 0.00 44.10 3.34
3794 3901 7.795047 TCTACTGCTGGAAAATCATATCTTGA 58.205 34.615 0.00 0.00 39.12 3.02
3797 3904 6.043012 AGCTCTACTGCTGGAAAATCATATCT 59.957 38.462 0.00 0.00 42.33 1.98
3865 3972 7.791766 AGACTGGAGGGATATCTTAAATTCAGA 59.208 37.037 2.05 0.00 0.00 3.27
3874 3981 6.226272 AGTATGAGACTGGAGGGATATCTT 57.774 41.667 2.05 0.00 36.87 2.40
3950 4057 4.161333 CGAAACCAATTGAGATCAGTTGC 58.839 43.478 7.12 0.00 40.75 4.17
3951 4058 5.049474 TGACGAAACCAATTGAGATCAGTTG 60.049 40.000 7.12 10.23 41.44 3.16
3997 4105 2.501723 AGAAGGCGTCCATAGTCAACAT 59.498 45.455 0.00 0.00 0.00 2.71
4027 4135 2.764572 ACCATTAACCCACGAGGACTAG 59.235 50.000 0.00 0.00 39.89 2.57
4032 4140 2.483014 TCAACCATTAACCCACGAGG 57.517 50.000 0.00 0.00 43.78 4.63
4060 4168 2.224523 ACACAGAACGGATGACACCATT 60.225 45.455 0.00 0.00 32.09 3.16
4069 4177 4.220821 AGTCAGATGTAACACAGAACGGAT 59.779 41.667 0.00 0.00 0.00 4.18
4072 4180 6.093404 ACATAGTCAGATGTAACACAGAACG 58.907 40.000 0.00 0.00 38.29 3.95
4228 4336 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
4229 4337 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
4230 4338 3.555956 CGTCATCTATTTTGGAACGGAGG 59.444 47.826 0.00 0.00 0.00 4.30
4231 4339 3.001330 GCGTCATCTATTTTGGAACGGAG 59.999 47.826 0.00 0.00 0.00 4.63
4232 4340 2.933906 GCGTCATCTATTTTGGAACGGA 59.066 45.455 0.00 0.00 0.00 4.69
4233 4341 2.675844 TGCGTCATCTATTTTGGAACGG 59.324 45.455 0.00 0.00 0.00 4.44
4234 4342 4.088648 GTTGCGTCATCTATTTTGGAACG 58.911 43.478 0.00 0.00 0.00 3.95
4235 4343 5.296813 AGTTGCGTCATCTATTTTGGAAC 57.703 39.130 0.00 0.00 0.00 3.62
4236 4344 5.957842 AAGTTGCGTCATCTATTTTGGAA 57.042 34.783 0.00 0.00 0.00 3.53
4237 4345 5.698832 CAAAGTTGCGTCATCTATTTTGGA 58.301 37.500 0.00 0.00 0.00 3.53
4238 4346 4.324402 GCAAAGTTGCGTCATCTATTTTGG 59.676 41.667 0.00 0.00 45.11 3.28
4239 4347 5.425941 GCAAAGTTGCGTCATCTATTTTG 57.574 39.130 0.00 0.00 45.11 2.44
4247 4355 9.063932 ACTAAAGTTAGTGCAAAGTTGCGTCAT 62.064 37.037 11.19 0.44 43.97 3.06
4248 4356 7.835160 ACTAAAGTTAGTGCAAAGTTGCGTCA 61.835 38.462 11.19 0.00 43.97 4.35
4249 4357 5.503520 ACTAAAGTTAGTGCAAAGTTGCGTC 60.504 40.000 11.19 7.13 43.97 5.19
4250 4358 4.334481 ACTAAAGTTAGTGCAAAGTTGCGT 59.666 37.500 11.19 4.06 43.97 5.24
4251 4359 4.844267 ACTAAAGTTAGTGCAAAGTTGCG 58.156 39.130 11.19 0.00 43.97 4.85
4252 4360 9.887406 TTTATACTAAAGTTAGTGCAAAGTTGC 57.113 29.630 12.92 9.11 43.44 4.17
4286 4394 5.698832 TCCAAAATAGATGACGCAACTTTG 58.301 37.500 0.00 0.00 0.00 2.77
4287 4395 5.957842 TCCAAAATAGATGACGCAACTTT 57.042 34.783 0.00 0.00 0.00 2.66
4288 4396 5.616866 CGTTCCAAAATAGATGACGCAACTT 60.617 40.000 0.00 0.00 0.00 2.66
4289 4397 4.142902 CGTTCCAAAATAGATGACGCAACT 60.143 41.667 0.00 0.00 0.00 3.16
4290 4398 4.088648 CGTTCCAAAATAGATGACGCAAC 58.911 43.478 0.00 0.00 0.00 4.17
4291 4399 3.126171 CCGTTCCAAAATAGATGACGCAA 59.874 43.478 0.00 0.00 0.00 4.85
4292 4400 2.675844 CCGTTCCAAAATAGATGACGCA 59.324 45.455 0.00 0.00 0.00 5.24
4293 4401 2.933906 TCCGTTCCAAAATAGATGACGC 59.066 45.455 0.00 0.00 0.00 5.19
4294 4402 3.555956 CCTCCGTTCCAAAATAGATGACG 59.444 47.826 0.00 0.00 0.00 4.35
4295 4403 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
4296 4404 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4297 4405 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
4298 4406 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
4299 4407 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4300 4408 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4301 4409 6.384886 ACTTATACTCCCTCCGTTCCAAAATA 59.615 38.462 0.00 0.00 0.00 1.40
4302 4410 5.191124 ACTTATACTCCCTCCGTTCCAAAAT 59.809 40.000 0.00 0.00 0.00 1.82
4303 4411 4.533311 ACTTATACTCCCTCCGTTCCAAAA 59.467 41.667 0.00 0.00 0.00 2.44
4304 4412 4.098894 ACTTATACTCCCTCCGTTCCAAA 58.901 43.478 0.00 0.00 0.00 3.28
4305 4413 3.716431 ACTTATACTCCCTCCGTTCCAA 58.284 45.455 0.00 0.00 0.00 3.53
4306 4414 3.393426 ACTTATACTCCCTCCGTTCCA 57.607 47.619 0.00 0.00 0.00 3.53
4307 4415 4.750021 AAACTTATACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 0.00 3.62
4308 4416 6.460814 GGACTAAACTTATACTCCCTCCGTTC 60.461 46.154 0.00 0.00 0.00 3.95
4309 4417 5.362143 GGACTAAACTTATACTCCCTCCGTT 59.638 44.000 0.00 0.00 0.00 4.44
4310 4418 4.892345 GGACTAAACTTATACTCCCTCCGT 59.108 45.833 0.00 0.00 0.00 4.69
4311 4419 5.139001 AGGACTAAACTTATACTCCCTCCG 58.861 45.833 0.00 0.00 0.00 4.63
4312 4420 6.206438 CGTAGGACTAAACTTATACTCCCTCC 59.794 46.154 0.00 0.00 0.00 4.30
4313 4421 6.770303 ACGTAGGACTAAACTTATACTCCCTC 59.230 42.308 0.00 0.00 0.00 4.30
4314 4422 6.667661 ACGTAGGACTAAACTTATACTCCCT 58.332 40.000 0.00 0.00 0.00 4.20
4315 4423 6.951062 ACGTAGGACTAAACTTATACTCCC 57.049 41.667 0.00 0.00 0.00 4.30
4316 4424 8.462016 TCAAACGTAGGACTAAACTTATACTCC 58.538 37.037 0.00 0.00 0.00 3.85
4317 4425 9.846248 TTCAAACGTAGGACTAAACTTATACTC 57.154 33.333 0.00 0.00 0.00 2.59
4318 4426 9.852091 CTTCAAACGTAGGACTAAACTTATACT 57.148 33.333 0.00 0.00 0.00 2.12
4337 4445 3.883489 GCCCATGGGTAGTATCTTCAAAC 59.117 47.826 31.58 6.08 37.65 2.93
4338 4446 3.525609 TGCCCATGGGTAGTATCTTCAAA 59.474 43.478 31.58 0.00 37.65 2.69
4441 4684 8.894768 ATTACAGCTAGTTTGAGGATGAATAC 57.105 34.615 3.79 0.00 0.00 1.89
4451 4694 8.414003 AGACGATGATAATTACAGCTAGTTTGA 58.586 33.333 0.00 0.00 0.00 2.69
4596 4839 1.513586 GCAACTCGTCCGTCCGTAG 60.514 63.158 0.00 0.00 0.00 3.51
4600 4843 1.635663 CCATTGCAACTCGTCCGTCC 61.636 60.000 0.00 0.00 0.00 4.79
4662 4905 7.826744 TGTCATCCTTTTGCAACACAGTATATA 59.173 33.333 0.00 0.00 0.00 0.86
4663 4906 6.658816 TGTCATCCTTTTGCAACACAGTATAT 59.341 34.615 0.00 0.00 0.00 0.86
4664 4907 6.000840 TGTCATCCTTTTGCAACACAGTATA 58.999 36.000 0.00 0.00 0.00 1.47
4665 4908 4.826733 TGTCATCCTTTTGCAACACAGTAT 59.173 37.500 0.00 0.00 0.00 2.12
4791 5159 5.923204 ACACAATGAACAATGCCCTAAAAA 58.077 33.333 0.00 0.00 0.00 1.94
4813 5181 6.073003 GGCATGAGTGGTTAGCTATATCAAAC 60.073 42.308 0.00 0.00 0.00 2.93
4824 5192 0.729116 CGCTTGGCATGAGTGGTTAG 59.271 55.000 4.32 0.00 0.00 2.34
4895 5263 3.064207 GCACTTGAAACGATACCTGACA 58.936 45.455 0.00 0.00 0.00 3.58
4905 5273 2.159430 TCAATCGATGGCACTTGAAACG 59.841 45.455 0.00 0.00 0.00 3.60
5057 5425 1.565156 GCGAACGTTCCATGTCTGCA 61.565 55.000 22.07 0.00 0.00 4.41
5252 5622 0.405585 AGCAATGCTGGTTGGGTACT 59.594 50.000 7.07 0.00 37.57 2.73
5369 5739 7.406620 TGAATGATAGGGGAATGTTCCTATT 57.593 36.000 11.32 4.08 44.01 1.73
5427 5797 6.273071 GTTCATTCCTGTAAAGTGCAAAACT 58.727 36.000 0.00 0.00 42.60 2.66
5504 5874 1.730501 CGCACCTCAATCATCAGTGT 58.269 50.000 0.00 0.00 0.00 3.55
5514 5884 0.249699 TCGAAGAAAGCGCACCTCAA 60.250 50.000 11.47 0.00 0.00 3.02
5628 5998 6.134535 ACCCAGGTTTGTATCAAGTATCAA 57.865 37.500 0.00 0.00 0.00 2.57
5629 5999 5.772393 ACCCAGGTTTGTATCAAGTATCA 57.228 39.130 0.00 0.00 0.00 2.15
5630 6000 7.462571 AAAACCCAGGTTTGTATCAAGTATC 57.537 36.000 15.33 0.00 46.22 2.24
5631 6001 7.849322 AAAAACCCAGGTTTGTATCAAGTAT 57.151 32.000 15.33 0.00 46.22 2.12
5656 6026 7.646446 TCGTAAAACTGTACGTACTACTGTA 57.354 36.000 25.12 10.29 45.56 2.74
5769 6158 1.263217 GTTGACGACGGATTTGCAACT 59.737 47.619 0.00 0.00 34.43 3.16
5770 6159 1.263217 AGTTGACGACGGATTTGCAAC 59.737 47.619 0.00 0.00 36.72 4.17
5772 6161 0.865111 CAGTTGACGACGGATTTGCA 59.135 50.000 0.00 0.00 0.00 4.08
5773 6162 0.165944 CCAGTTGACGACGGATTTGC 59.834 55.000 0.00 0.00 0.00 3.68
5774 6163 1.508632 ACCAGTTGACGACGGATTTG 58.491 50.000 0.00 0.00 0.00 2.32
5921 6310 7.382898 TGTCTACTTATGTTGTTGCATACTCA 58.617 34.615 0.00 0.00 31.77 3.41
5922 6311 7.464710 GCTGTCTACTTATGTTGTTGCATACTC 60.465 40.741 0.00 0.00 31.77 2.59
5924 6313 6.478588 GCTGTCTACTTATGTTGTTGCATAC 58.521 40.000 0.00 0.00 31.77 2.39
5927 6316 3.431912 CGCTGTCTACTTATGTTGTTGCA 59.568 43.478 0.00 0.00 0.00 4.08
6017 6517 2.264813 GATTACGGACGCTTAAGTGCA 58.735 47.619 15.92 0.00 32.46 4.57
6049 6549 1.008767 CTTAGCGTCGATCGACCCC 60.009 63.158 35.48 27.30 41.76 4.95
6050 6550 1.657794 GCTTAGCGTCGATCGACCC 60.658 63.158 35.48 29.11 41.76 4.46
6052 6552 2.380102 TTAGCTTAGCGTCGATCGAC 57.620 50.000 33.22 33.22 42.86 4.20
6082 6586 2.376109 AGAAAATGAGATGCTGGCCTG 58.624 47.619 3.32 4.26 0.00 4.85
6220 6756 2.602660 CACAACAAAAACAAAGGGAGCG 59.397 45.455 0.00 0.00 0.00 5.03
6224 6760 3.434984 CACCACACAACAAAAACAAAGGG 59.565 43.478 0.00 0.00 0.00 3.95
6281 6817 1.407936 CTGATCAGTGATCCCCTCGT 58.592 55.000 26.58 0.00 38.20 4.18
6329 6865 0.107017 CCCAATGATTCAGCTCCCGT 60.107 55.000 0.00 0.00 0.00 5.28
6464 7000 2.331132 GCACTTGGCCAGTCTGAGC 61.331 63.158 5.11 4.72 36.11 4.26
6465 7001 2.031516 CGCACTTGGCCAGTCTGAG 61.032 63.158 5.11 1.93 40.31 3.35
6483 7019 3.821033 AGGTTAATCCACAGACAAAGCAC 59.179 43.478 0.00 0.00 39.02 4.40
6484 7020 3.820467 CAGGTTAATCCACAGACAAAGCA 59.180 43.478 0.00 0.00 39.02 3.91
6485 7021 3.191371 CCAGGTTAATCCACAGACAAAGC 59.809 47.826 0.00 0.00 39.02 3.51
6486 7022 3.191371 GCCAGGTTAATCCACAGACAAAG 59.809 47.826 0.00 0.00 39.02 2.77
6487 7023 3.153919 GCCAGGTTAATCCACAGACAAA 58.846 45.455 0.00 0.00 39.02 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.