Multiple sequence alignment - TraesCS2B01G212500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G212500 chr2B 100.000 7269 0 0 1 7269 197153633 197146365 0.000000e+00 13424.0
1 TraesCS2B01G212500 chr2B 87.346 648 69 10 5 644 406539021 406538379 0.000000e+00 730.0
2 TraesCS2B01G212500 chr2B 86.769 650 68 15 6 644 637876058 637875416 0.000000e+00 708.0
3 TraesCS2B01G212500 chr2B 98.477 197 3 0 4835 5031 7765449 7765645 1.500000e-91 348.0
4 TraesCS2B01G212500 chr2B 95.794 214 5 4 4813 5024 522079188 522078977 6.980000e-90 342.0
5 TraesCS2B01G212500 chr2B 89.256 121 12 1 2111 2230 197150934 197150814 4.540000e-32 150.0
6 TraesCS2B01G212500 chr2B 89.256 121 12 1 2700 2820 197151523 197151404 4.540000e-32 150.0
7 TraesCS2B01G212500 chr2A 95.128 2545 77 10 2303 4843 162415085 162417586 0.000000e+00 3969.0
8 TraesCS2B01G212500 chr2A 90.698 1677 79 35 659 2298 162413407 162415043 0.000000e+00 2161.0
9 TraesCS2B01G212500 chr2A 92.624 1315 75 14 5032 6330 162417571 162418879 0.000000e+00 1871.0
10 TraesCS2B01G212500 chr2A 86.615 650 73 12 3 644 770918865 770918222 0.000000e+00 706.0
11 TraesCS2B01G212500 chr2A 83.211 679 74 13 6331 6984 162418911 162419574 2.920000e-163 586.0
12 TraesCS2B01G212500 chr2A 90.972 288 20 3 6969 7252 162419591 162419876 4.110000e-102 383.0
13 TraesCS2B01G212500 chr2A 98.492 199 3 0 4833 5031 362436454 362436652 1.160000e-92 351.0
14 TraesCS2B01G212500 chr2A 97.059 204 4 2 4843 5044 713155472 713155269 6.980000e-90 342.0
15 TraesCS2B01G212500 chr2A 85.802 162 19 3 2686 2845 162414838 162414997 1.250000e-37 169.0
16 TraesCS2B01G212500 chr2A 89.256 121 12 1 2111 2230 162415472 162415592 4.540000e-32 150.0
17 TraesCS2B01G212500 chr2D 93.215 2093 91 12 2760 4843 138697704 138695654 0.000000e+00 3031.0
18 TraesCS2B01G212500 chr2D 90.980 1674 91 32 659 2290 138699761 138698106 0.000000e+00 2200.0
19 TraesCS2B01G212500 chr2D 91.418 1305 62 16 5032 6330 138695669 138694409 0.000000e+00 1744.0
20 TraesCS2B01G212500 chr2D 85.892 964 81 19 6331 7269 138694376 138693443 0.000000e+00 976.0
21 TraesCS2B01G212500 chr2D 86.697 654 70 13 1 644 292292480 292291834 0.000000e+00 710.0
22 TraesCS2B01G212500 chr2D 90.831 349 31 1 2303 2651 138698059 138697712 3.970000e-127 466.0
23 TraesCS2B01G212500 chr2D 91.803 61 5 0 2170 2230 138697704 138697644 1.300000e-12 86.1
24 TraesCS2B01G212500 chr1D 87.215 657 70 12 6 653 6406743 6406092 0.000000e+00 736.0
25 TraesCS2B01G212500 chr1D 89.623 106 9 2 6416 6520 211496868 211496764 4.580000e-27 134.0
26 TraesCS2B01G212500 chr3D 87.077 650 69 13 3 644 137489180 137489822 0.000000e+00 721.0
27 TraesCS2B01G212500 chr3A 86.697 654 66 13 3 644 635308173 635307529 0.000000e+00 706.0
28 TraesCS2B01G212500 chr3A 86.615 650 72 12 3 644 716061595 716062237 0.000000e+00 704.0
29 TraesCS2B01G212500 chr3A 97.549 204 2 3 4844 5045 83748868 83748666 5.400000e-91 346.0
30 TraesCS2B01G212500 chr3A 83.688 141 23 0 2508 2648 151637718 151637578 4.580000e-27 134.0
31 TraesCS2B01G212500 chr3A 82.171 129 22 1 2389 2516 704693486 704693614 7.710000e-20 110.0
32 TraesCS2B01G212500 chr3A 76.596 188 40 4 6370 6554 132104117 132103931 4.640000e-17 100.0
33 TraesCS2B01G212500 chr7B 86.615 650 70 14 3 644 178399034 178399674 0.000000e+00 702.0
34 TraesCS2B01G212500 chr6A 100.000 191 0 0 4844 5034 189563479 189563669 3.230000e-93 353.0
35 TraesCS2B01G212500 chr6A 98.969 194 1 1 4837 5029 178446673 178446480 5.400000e-91 346.0
36 TraesCS2B01G212500 chr1A 100.000 190 0 0 4842 5031 105904899 105904710 1.160000e-92 351.0
37 TraesCS2B01G212500 chr1A 85.256 156 21 2 6366 6520 266197170 266197016 7.550000e-35 159.0
38 TraesCS2B01G212500 chr4B 98.010 201 1 3 4835 5032 673191232 673191032 5.400000e-91 346.0
39 TraesCS2B01G212500 chrUn 83.673 343 43 6 2344 2686 36178708 36179037 1.970000e-80 311.0
40 TraesCS2B01G212500 chr5D 84.516 155 21 2 2380 2534 502029297 502029146 4.540000e-32 150.0
41 TraesCS2B01G212500 chr1B 80.263 152 28 2 6370 6520 305285955 305286105 5.960000e-21 113.0
42 TraesCS2B01G212500 chr7D 93.846 65 4 0 2413 2477 79630360 79630296 1.670000e-16 99.0
43 TraesCS2B01G212500 chr5A 80.508 118 17 2 2403 2517 2851658 2851544 1.300000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G212500 chr2B 197146365 197153633 7268 True 4574.666667 13424 92.837333 1 7269 3 chr2B.!!$R4 7268
1 TraesCS2B01G212500 chr2B 406538379 406539021 642 True 730.000000 730 87.346000 5 644 1 chr2B.!!$R1 639
2 TraesCS2B01G212500 chr2B 637875416 637876058 642 True 708.000000 708 86.769000 6 644 1 chr2B.!!$R3 638
3 TraesCS2B01G212500 chr2A 162413407 162419876 6469 False 1327.000000 3969 89.670143 659 7252 7 chr2A.!!$F2 6593
4 TraesCS2B01G212500 chr2A 770918222 770918865 643 True 706.000000 706 86.615000 3 644 1 chr2A.!!$R2 641
5 TraesCS2B01G212500 chr2D 138693443 138699761 6318 True 1417.183333 3031 90.689833 659 7269 6 chr2D.!!$R2 6610
6 TraesCS2B01G212500 chr2D 292291834 292292480 646 True 710.000000 710 86.697000 1 644 1 chr2D.!!$R1 643
7 TraesCS2B01G212500 chr1D 6406092 6406743 651 True 736.000000 736 87.215000 6 653 1 chr1D.!!$R1 647
8 TraesCS2B01G212500 chr3D 137489180 137489822 642 False 721.000000 721 87.077000 3 644 1 chr3D.!!$F1 641
9 TraesCS2B01G212500 chr3A 635307529 635308173 644 True 706.000000 706 86.697000 3 644 1 chr3A.!!$R4 641
10 TraesCS2B01G212500 chr3A 716061595 716062237 642 False 704.000000 704 86.615000 3 644 1 chr3A.!!$F2 641
11 TraesCS2B01G212500 chr7B 178399034 178399674 640 False 702.000000 702 86.615000 3 644 1 chr7B.!!$F1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
732 753 0.951040 GTGGGTCAAACTCAGCGGAG 60.951 60.000 12.66 12.66 46.96 4.63 F
1252 1287 0.615850 GCTGTTCCTCTGGGTTAGCT 59.384 55.000 0.00 0.00 34.11 3.32 F
1359 1399 1.075536 GTTCAGGTTGGGGATTCCTGT 59.924 52.381 2.01 0.00 46.04 4.00 F
2651 2756 1.134367 ACCACGATGTACCATCACGAG 59.866 52.381 5.19 0.00 0.00 4.18 F
4028 4141 0.679002 AACATGGCAGCGCTCAAGAT 60.679 50.000 7.13 0.00 0.00 2.40 F
4254 4367 0.481128 TGGTCCTTTTCCTTGTCCCC 59.519 55.000 0.00 0.00 0.00 4.81 F
4880 4994 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2652 2757 0.468226 AGGGAGTTTGCAGTCGTGAA 59.532 50.0 0.00 0.00 0.00 3.18 R
2653 2758 0.468226 AAGGGAGTTTGCAGTCGTGA 59.532 50.0 0.00 0.00 0.00 4.35 R
2876 2981 1.088306 CCTAGGGCTAGATAGTCGCG 58.912 60.0 0.00 0.00 35.21 5.87 R
4250 4363 0.485543 GGGGACAAGGAAAAAGGGGA 59.514 55.0 0.00 0.00 0.00 4.81 R
4833 4947 0.035439 GCTCCCCTTCGGTTGAATGA 60.035 55.0 0.00 0.00 32.61 2.57 R
5262 5379 0.179056 AGTGGTCACGAAACCCTGTG 60.179 55.0 8.20 0.00 38.65 3.66 R
6329 6462 0.041312 CTGCAAAAACACGTCCGGAG 60.041 55.0 3.06 1.12 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
527 547 2.235155 TCAGCAAATACCGGCTAAGTCA 59.765 45.455 0.00 0.00 38.56 3.41
532 552 3.644884 AATACCGGCTAAGTCATCTCG 57.355 47.619 0.00 0.00 0.00 4.04
538 558 2.541999 CGGCTAAGTCATCTCGAGGTTC 60.542 54.545 13.56 0.76 0.00 3.62
572 592 4.081087 GGGATTAGAGAGTTTGGTGTGCTA 60.081 45.833 0.00 0.00 0.00 3.49
578 598 5.625150 AGAGAGTTTGGTGTGCTAATTTCT 58.375 37.500 0.00 0.00 0.00 2.52
595 615 5.768980 ATTTCTGGGATTGAGAGTTCAGA 57.231 39.130 0.00 0.00 34.15 3.27
614 634 4.754618 TCAGAGTTTGATTTAGCTTTCGCA 59.245 37.500 0.00 0.00 39.10 5.10
623 643 7.969387 TGATTTAGCTTTCGCATACAAATTC 57.031 32.000 0.00 0.00 39.10 2.17
644 664 6.793492 TTCAAGGTTTGTTTTGGACTTTTG 57.207 33.333 0.00 0.00 0.00 2.44
646 666 4.278975 AGGTTTGTTTTGGACTTTTGCA 57.721 36.364 0.00 0.00 0.00 4.08
649 669 5.353956 AGGTTTGTTTTGGACTTTTGCATTC 59.646 36.000 0.00 0.00 0.00 2.67
653 673 4.142271 TGTTTTGGACTTTTGCATTCGTCT 60.142 37.500 8.91 0.00 0.00 4.18
654 674 3.896648 TTGGACTTTTGCATTCGTCTC 57.103 42.857 8.91 2.42 0.00 3.36
655 675 3.126001 TGGACTTTTGCATTCGTCTCT 57.874 42.857 8.91 0.00 0.00 3.10
656 676 4.265904 TGGACTTTTGCATTCGTCTCTA 57.734 40.909 8.91 0.00 0.00 2.43
657 677 4.832248 TGGACTTTTGCATTCGTCTCTAT 58.168 39.130 8.91 0.00 0.00 1.98
666 686 4.011023 GCATTCGTCTCTATAGGCCTAGA 58.989 47.826 19.33 13.30 0.00 2.43
708 729 3.490439 TCCAGTCATTTCAGCAGTTCA 57.510 42.857 0.00 0.00 0.00 3.18
709 730 4.025040 TCCAGTCATTTCAGCAGTTCAT 57.975 40.909 0.00 0.00 0.00 2.57
732 753 0.951040 GTGGGTCAAACTCAGCGGAG 60.951 60.000 12.66 12.66 46.96 4.63
1139 1173 6.531021 TCCCGAATGATACTAGGATTTTTCC 58.469 40.000 0.00 0.00 0.00 3.13
1173 1207 5.507637 GGGAGTATCGTCTTCATAGGGATA 58.492 45.833 0.00 0.00 34.37 2.59
1242 1277 1.004440 ACAGGCTTCGCTGTTCCTC 60.004 57.895 0.00 0.00 0.00 3.71
1250 1285 0.895530 TCGCTGTTCCTCTGGGTTAG 59.104 55.000 0.00 0.00 0.00 2.34
1251 1286 0.741221 CGCTGTTCCTCTGGGTTAGC 60.741 60.000 0.00 0.00 33.83 3.09
1252 1287 0.615850 GCTGTTCCTCTGGGTTAGCT 59.384 55.000 0.00 0.00 34.11 3.32
1253 1288 1.831736 GCTGTTCCTCTGGGTTAGCTA 59.168 52.381 0.00 0.00 34.11 3.32
1282 1321 7.591795 AGTCGATTGTATTTCTAAGCAGTATCG 59.408 37.037 0.00 0.00 34.23 2.92
1348 1388 4.916983 TTGGACTTCAATGTTCAGGTTG 57.083 40.909 0.00 0.00 0.00 3.77
1349 1389 3.221771 TGGACTTCAATGTTCAGGTTGG 58.778 45.455 0.00 0.00 0.00 3.77
1350 1390 2.558359 GGACTTCAATGTTCAGGTTGGG 59.442 50.000 0.00 0.00 0.00 4.12
1359 1399 1.075536 GTTCAGGTTGGGGATTCCTGT 59.924 52.381 2.01 0.00 46.04 4.00
1381 1435 7.164230 TGTTCTCTTACATGTTGTTTTGGTT 57.836 32.000 2.30 0.00 0.00 3.67
1432 1487 9.620660 GAACAACTTGATGGAATACGTATTTTT 57.379 29.630 21.18 9.74 0.00 1.94
1433 1488 8.964420 ACAACTTGATGGAATACGTATTTTTG 57.036 30.769 21.18 14.85 0.00 2.44
1434 1489 7.540745 ACAACTTGATGGAATACGTATTTTTGC 59.459 33.333 21.18 8.93 0.00 3.68
1435 1490 7.391148 ACTTGATGGAATACGTATTTTTGCT 57.609 32.000 21.18 6.00 0.00 3.91
1505 1560 5.763204 GTGACAAATCTCCCAAGTGAAGTTA 59.237 40.000 0.00 0.00 0.00 2.24
1557 1613 3.340814 TTCACAGAGATTGAGAAGGCC 57.659 47.619 0.00 0.00 32.45 5.19
1563 1619 1.139853 GAGATTGAGAAGGCCGTGGAT 59.860 52.381 0.00 0.00 0.00 3.41
1575 1631 2.650322 GCCGTGGATAAAATTCAGGGA 58.350 47.619 10.44 0.00 38.33 4.20
1578 1634 4.099419 GCCGTGGATAAAATTCAGGGAAAT 59.901 41.667 10.44 0.00 38.33 2.17
1602 1658 5.188751 TGTTCCAAAAGTTGAGTGGGATTTT 59.811 36.000 1.73 0.00 32.95 1.82
1611 1667 5.840693 AGTTGAGTGGGATTTTGAAGGAATT 59.159 36.000 0.00 0.00 0.00 2.17
1629 1685 8.421249 AAGGAATTCATTACTTTGACAATGGA 57.579 30.769 2.99 0.00 37.68 3.41
1712 1768 2.836944 GTTCAGCCAGGAACGTACC 58.163 57.895 0.00 0.00 37.96 3.34
1727 1785 2.937799 ACGTACCGTGTTTTGAACATGT 59.062 40.909 10.95 0.00 44.91 3.21
1750 1810 9.765795 ATGTAGAAATTACTAGTGAGGTATTGC 57.234 33.333 5.39 0.00 0.00 3.56
1755 1815 3.914426 ACTAGTGAGGTATTGCCCTTG 57.086 47.619 0.00 0.00 38.26 3.61
1766 1826 5.665812 AGGTATTGCCCTTGTCTTATGAGTA 59.334 40.000 0.00 0.00 38.26 2.59
1770 1830 6.808321 TTGCCCTTGTCTTATGAGTAGTAT 57.192 37.500 0.00 0.00 0.00 2.12
1867 1927 9.438291 CTTTTGCTCCTGTATAAAATATTCGTG 57.562 33.333 0.00 0.00 0.00 4.35
1989 2049 1.533625 TGGTTGTGCAGCCAGTATTC 58.466 50.000 3.60 0.00 36.75 1.75
2290 2358 5.986501 ATTCCTCTTCTCGTCACTTTAGT 57.013 39.130 0.00 0.00 0.00 2.24
2409 2514 1.899814 TGATCCTCCAGTACAACGCTT 59.100 47.619 0.00 0.00 0.00 4.68
2417 2522 3.196901 TCCAGTACAACGCTTGGTGATAT 59.803 43.478 0.00 0.00 34.12 1.63
2462 2567 6.049955 TCCCGTTCAAAGAATGATACTCTT 57.950 37.500 0.73 0.00 38.03 2.85
2467 2572 9.098355 CCGTTCAAAGAATGATACTCTTCATAA 57.902 33.333 0.73 0.00 38.03 1.90
2527 2632 3.000727 CCATAATTAACGCGATCCTCCC 58.999 50.000 15.93 0.00 0.00 4.30
2550 2655 4.675671 CGTCCAAAGACTGATACTCTCCAC 60.676 50.000 0.00 0.00 41.16 4.02
2638 2743 2.223618 CGAAACCAAACCAAACCACGAT 60.224 45.455 0.00 0.00 0.00 3.73
2650 2755 1.179152 ACCACGATGTACCATCACGA 58.821 50.000 5.19 0.00 0.00 4.35
2651 2756 1.134367 ACCACGATGTACCATCACGAG 59.866 52.381 5.19 0.00 0.00 4.18
2652 2757 1.134367 CCACGATGTACCATCACGAGT 59.866 52.381 5.19 0.00 0.00 4.18
2653 2758 2.416836 CCACGATGTACCATCACGAGTT 60.417 50.000 5.19 0.00 0.00 3.01
2654 2759 2.852413 CACGATGTACCATCACGAGTTC 59.148 50.000 5.19 0.00 0.00 3.01
2655 2760 2.490509 ACGATGTACCATCACGAGTTCA 59.509 45.455 5.19 0.00 0.00 3.18
2656 2761 2.852413 CGATGTACCATCACGAGTTCAC 59.148 50.000 5.19 0.00 0.00 3.18
2657 2762 2.341318 TGTACCATCACGAGTTCACG 57.659 50.000 0.00 0.00 39.31 4.35
2738 2843 4.970662 ACACATGATTTTCCTTGGATCG 57.029 40.909 0.00 0.00 0.00 3.69
2756 2861 4.457949 GGATCGACAACCTTTTATGTTGGT 59.542 41.667 7.89 0.00 45.72 3.67
2799 2904 1.319947 AGGGGAGAGGAGTGGTGATA 58.680 55.000 0.00 0.00 0.00 2.15
2853 2958 7.177568 TGACTAGGGCTATTCAGAGAATGTATC 59.822 40.741 2.65 0.00 0.00 2.24
2859 2964 7.220030 GGCTATTCAGAGAATGTATCTTTCCA 58.780 38.462 2.65 0.00 38.96 3.53
2913 3018 9.622637 AGCCCTAGGTAATAGATATTTCTCTTT 57.377 33.333 8.29 0.00 32.76 2.52
2933 3038 9.587772 TCTCTTTGCTGTTCTTCACTATATTAC 57.412 33.333 0.00 0.00 0.00 1.89
3133 3238 4.525100 TGGGTTTAGTTGGATTTAACTGCC 59.475 41.667 0.00 0.00 40.85 4.85
3195 3300 9.869757 AATGCCTTTCCTTTGTGTTATAATTAC 57.130 29.630 0.00 0.00 0.00 1.89
3274 3379 3.149196 TGACAATTTGGCTTCTGGACTC 58.851 45.455 3.47 0.00 0.00 3.36
3427 3535 3.365969 GCAACTTTTGGAATGTAGGACCG 60.366 47.826 0.00 0.00 0.00 4.79
3533 3641 8.554528 CCTGTGTTGCTTATTCAGTATATTGAG 58.445 37.037 0.00 0.00 0.00 3.02
3643 3752 3.508793 ACCCATCTTCTTCAGTGCAATTG 59.491 43.478 0.00 0.00 0.00 2.32
3646 3755 3.228188 TCTTCTTCAGTGCAATTGGGT 57.772 42.857 7.72 0.00 0.00 4.51
3723 3836 9.986833 CTATCATGTTAATGTCGACATTCAAAA 57.013 29.630 39.24 27.63 44.67 2.44
3820 3933 2.514205 GCTTGAAAGAAGCTTTGGCA 57.486 45.000 0.00 0.00 41.70 4.92
3912 4025 2.507407 TTCCTGGTAAATCTGCCACC 57.493 50.000 0.00 0.00 33.19 4.61
3930 4043 1.414919 ACCGCACTTGTCTTCCACTTA 59.585 47.619 0.00 0.00 0.00 2.24
3968 4081 7.391620 TCATTATTTTAGAGGAAAGGTGTCGT 58.608 34.615 0.00 0.00 0.00 4.34
4028 4141 0.679002 AACATGGCAGCGCTCAAGAT 60.679 50.000 7.13 0.00 0.00 2.40
4238 4351 6.697641 TTTTACTATCTTGGAGACCTTGGT 57.302 37.500 0.00 0.00 0.00 3.67
4239 4352 5.934402 TTACTATCTTGGAGACCTTGGTC 57.066 43.478 11.59 11.59 0.00 4.02
4240 4353 3.108376 ACTATCTTGGAGACCTTGGTCC 58.892 50.000 15.44 7.74 0.00 4.46
4241 4354 2.350863 ATCTTGGAGACCTTGGTCCT 57.649 50.000 15.44 4.15 33.57 3.85
4242 4355 2.118403 TCTTGGAGACCTTGGTCCTT 57.882 50.000 15.44 0.00 33.57 3.36
4243 4356 2.418669 TCTTGGAGACCTTGGTCCTTT 58.581 47.619 15.44 0.00 33.57 3.11
4244 4357 2.783510 TCTTGGAGACCTTGGTCCTTTT 59.216 45.455 15.44 0.00 33.57 2.27
4245 4358 2.951229 TGGAGACCTTGGTCCTTTTC 57.049 50.000 15.44 7.12 33.57 2.29
4246 4359 1.423921 TGGAGACCTTGGTCCTTTTCC 59.576 52.381 15.44 15.21 33.57 3.13
4247 4360 1.705745 GGAGACCTTGGTCCTTTTCCT 59.294 52.381 15.44 0.00 0.00 3.36
4248 4361 2.108425 GGAGACCTTGGTCCTTTTCCTT 59.892 50.000 15.44 0.00 0.00 3.36
4249 4362 3.149981 GAGACCTTGGTCCTTTTCCTTG 58.850 50.000 15.44 0.00 0.00 3.61
4250 4363 2.514160 AGACCTTGGTCCTTTTCCTTGT 59.486 45.455 15.44 0.00 0.00 3.16
4251 4364 2.885266 GACCTTGGTCCTTTTCCTTGTC 59.115 50.000 8.54 0.00 0.00 3.18
4252 4365 2.239400 CCTTGGTCCTTTTCCTTGTCC 58.761 52.381 0.00 0.00 0.00 4.02
4253 4366 2.239400 CTTGGTCCTTTTCCTTGTCCC 58.761 52.381 0.00 0.00 0.00 4.46
4254 4367 0.481128 TGGTCCTTTTCCTTGTCCCC 59.519 55.000 0.00 0.00 0.00 4.81
4255 4368 0.778083 GGTCCTTTTCCTTGTCCCCT 59.222 55.000 0.00 0.00 0.00 4.79
4310 4423 6.156602 TCATTTGTCAAATGGGCCAATTAGAT 59.843 34.615 29.34 0.00 46.40 1.98
4561 4674 8.543774 ACTCAGTGGTTAGATCATTGAACTTAT 58.456 33.333 1.47 0.00 32.02 1.73
4588 4701 8.261492 AGACAATTTTCTGTAGCATGAAGTAG 57.739 34.615 0.00 0.00 0.00 2.57
4683 4797 1.072806 TCACCAGAGCAGATGCACTTT 59.927 47.619 7.68 0.00 45.16 2.66
4684 4798 1.199327 CACCAGAGCAGATGCACTTTG 59.801 52.381 7.68 2.41 45.16 2.77
4685 4799 0.809385 CCAGAGCAGATGCACTTTGG 59.191 55.000 7.68 2.15 45.16 3.28
4719 4833 7.766278 TGGTTTTACTTGCAAATACAACATTGT 59.234 29.630 16.18 2.32 44.86 2.71
4755 4869 1.072063 TCCCACCCCAACCCCTAAA 60.072 57.895 0.00 0.00 0.00 1.85
4756 4870 1.143970 TCCCACCCCAACCCCTAAAG 61.144 60.000 0.00 0.00 0.00 1.85
4786 4900 2.512692 ATAGCAAATGGCCAGACACA 57.487 45.000 13.05 0.00 46.50 3.72
4839 4953 6.934048 TTTTGTACATGTGTGAGTCATTCA 57.066 33.333 9.11 0.00 0.00 2.57
4840 4954 6.934048 TTTGTACATGTGTGAGTCATTCAA 57.066 33.333 9.11 0.00 37.61 2.69
4841 4955 5.922739 TGTACATGTGTGAGTCATTCAAC 57.077 39.130 9.11 0.00 37.61 3.18
4842 4956 4.754618 TGTACATGTGTGAGTCATTCAACC 59.245 41.667 9.11 0.00 37.61 3.77
4843 4957 2.807967 ACATGTGTGAGTCATTCAACCG 59.192 45.455 0.00 0.00 37.61 4.44
4844 4958 2.900716 TGTGTGAGTCATTCAACCGA 57.099 45.000 0.00 0.00 37.61 4.69
4845 4959 3.186702 TGTGTGAGTCATTCAACCGAA 57.813 42.857 0.00 0.00 37.61 4.30
4846 4960 3.130633 TGTGTGAGTCATTCAACCGAAG 58.869 45.455 0.00 0.00 37.61 3.79
4867 4981 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
4868 4982 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
4869 4983 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
4870 4984 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
4871 4985 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
4872 4986 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
4873 4987 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
4878 4992 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
4879 4993 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
4880 4994 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
4881 4995 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
4882 4996 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
4883 4997 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
4884 4998 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
4885 4999 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
4886 5000 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
4887 5001 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
4888 5002 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
4889 5003 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
4890 5004 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
4891 5005 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
4892 5006 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
4907 5021 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
4908 5022 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
4909 5023 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
4910 5024 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
4911 5025 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
4912 5026 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
4913 5027 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
4914 5028 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
4915 5029 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
4916 5030 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
4930 5044 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
4931 5045 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
4932 5046 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
4933 5047 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
4934 5048 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
4935 5049 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
4936 5050 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
4937 5051 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
4938 5052 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
4939 5053 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
4940 5054 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
4941 5055 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
4942 5056 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
4943 5057 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
4944 5058 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
4945 5059 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
4946 5060 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
4947 5061 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
4948 5062 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
4949 5063 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
4950 5064 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
4951 5065 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
4952 5066 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
4953 5067 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
4954 5068 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
4955 5069 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
4956 5070 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
4957 5071 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
4958 5072 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
4959 5073 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
4960 5074 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
4961 5075 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
4962 5076 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
4963 5077 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
4964 5078 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
4965 5079 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
4966 5080 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
4967 5081 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
4972 5086 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
4973 5087 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
4974 5088 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
4975 5089 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
4976 5090 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
4977 5091 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
4978 5092 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
4979 5093 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
4980 5094 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
4981 5095 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
4982 5096 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
4983 5097 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
4984 5098 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
4985 5099 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
4986 5100 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
4987 5101 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
4988 5102 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
4989 5103 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
4990 5104 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
4991 5105 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
5016 5130 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
5017 5131 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
5018 5132 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
5019 5133 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
5020 5134 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
5021 5135 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
5022 5136 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
5023 5137 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
5024 5138 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
5025 5139 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
5094 5208 8.885693 ATACTGATAGATGATAGCCACTGTTA 57.114 34.615 0.00 0.00 0.00 2.41
5110 5224 3.261897 ACTGTTATCCAAGTCCTGACTGG 59.738 47.826 0.00 5.22 41.58 4.00
5146 5260 7.202016 ACTTTCTTTTCTCGTGCATATTTGA 57.798 32.000 0.00 0.00 0.00 2.69
5168 5282 7.099266 TGATCATAATTAAACTGTGCCTTGG 57.901 36.000 0.00 0.00 0.00 3.61
5180 5294 2.774234 TGTGCCTTGGGGAAAATTTCAA 59.226 40.909 8.09 0.00 33.58 2.69
5185 5299 3.752747 CCTTGGGGAAAATTTCAATGCAC 59.247 43.478 8.09 0.00 33.58 4.57
5204 5318 3.377172 GCACACTGGTTGTAACACTCTTT 59.623 43.478 0.00 0.00 35.67 2.52
5256 5373 5.163854 GGGATGACAGATTTGTTGTAACTCG 60.164 44.000 0.00 0.00 37.76 4.18
5261 5378 7.572759 TGACAGATTTGTTGTAACTCGATTTC 58.427 34.615 0.00 0.00 37.76 2.17
5262 5379 6.899114 ACAGATTTGTTGTAACTCGATTTCC 58.101 36.000 0.00 0.00 32.28 3.13
5268 5385 3.328382 TGTAACTCGATTTCCACAGGG 57.672 47.619 0.00 0.00 0.00 4.45
5274 5391 1.071071 TCGATTTCCACAGGGTTTCGT 59.929 47.619 0.00 0.00 34.69 3.85
5289 5406 4.062991 GGTTTCGTGACCACTCACTTTAT 58.937 43.478 5.31 0.00 44.27 1.40
5454 5571 0.106318 GGGAGCTTGGCATCCTGAAT 60.106 55.000 5.64 0.00 35.80 2.57
5487 5604 2.101415 CCTATGTTGCTCCATCGACTCA 59.899 50.000 0.00 0.00 0.00 3.41
5535 5652 0.250513 AGGAAGTGGAGATTCGTGCC 59.749 55.000 0.00 0.00 0.00 5.01
5601 5718 0.605589 AGTTTGGGAAGCAGGTACGC 60.606 55.000 0.00 0.00 0.00 4.42
5620 5737 1.865970 GCGCATCTGAATCTCTTCCTG 59.134 52.381 0.30 0.00 0.00 3.86
5732 5850 2.472695 AACTAACGGCTGCAGATTGA 57.527 45.000 20.43 0.00 0.00 2.57
5740 5858 2.540361 CGGCTGCAGATTGATGTTTAGC 60.540 50.000 20.43 0.00 0.00 3.09
5741 5859 2.223665 GGCTGCAGATTGATGTTTAGCC 60.224 50.000 20.43 3.02 42.12 3.93
5742 5860 2.686915 GCTGCAGATTGATGTTTAGCCT 59.313 45.455 20.43 0.00 0.00 4.58
5743 5861 3.488721 GCTGCAGATTGATGTTTAGCCTG 60.489 47.826 20.43 0.00 0.00 4.85
5744 5862 2.424601 TGCAGATTGATGTTTAGCCTGC 59.575 45.455 0.00 0.00 43.94 4.85
5745 5863 2.424601 GCAGATTGATGTTTAGCCTGCA 59.575 45.455 0.00 0.00 43.37 4.41
5746 5864 3.733077 GCAGATTGATGTTTAGCCTGCAC 60.733 47.826 0.00 0.00 43.37 4.57
5747 5865 3.693085 CAGATTGATGTTTAGCCTGCACT 59.307 43.478 0.00 0.00 0.00 4.40
5748 5866 3.944015 AGATTGATGTTTAGCCTGCACTC 59.056 43.478 0.00 0.00 0.00 3.51
5749 5867 3.423539 TTGATGTTTAGCCTGCACTCT 57.576 42.857 0.00 0.00 0.00 3.24
5751 5869 3.754965 TGATGTTTAGCCTGCACTCTTT 58.245 40.909 0.00 0.00 0.00 2.52
5753 5871 4.584325 TGATGTTTAGCCTGCACTCTTTTT 59.416 37.500 0.00 0.00 0.00 1.94
5779 5897 0.248134 CACCGAGAAGACGACCGATC 60.248 60.000 0.00 0.00 35.09 3.69
5790 5908 6.477033 AGAAGACGACCGATCAAATTCATTAG 59.523 38.462 0.00 0.00 0.00 1.73
5821 5939 4.994217 TGAGTGCACGATCAACTTCATTAA 59.006 37.500 12.01 0.00 0.00 1.40
5868 5991 3.719924 CAGTCAATGTGTGTGGCATTTT 58.280 40.909 0.00 0.00 34.68 1.82
5890 6013 0.884704 TTCAACTCGGGCTGACTTGC 60.885 55.000 9.94 0.00 0.00 4.01
5891 6014 1.302033 CAACTCGGGCTGACTTGCT 60.302 57.895 0.00 0.00 0.00 3.91
5911 6034 5.237048 TGCTTCTTGCTTTTGTGTTTTTCT 58.763 33.333 0.00 0.00 43.37 2.52
6152 6275 2.609350 CACAAAAGTGCAAGCTGTTGT 58.391 42.857 6.99 6.99 45.05 3.32
6289 6422 1.680338 AATTCAACCAGCGGCTATCC 58.320 50.000 0.26 0.00 0.00 2.59
6294 6427 0.179000 AACCAGCGGCTATCCTTCTG 59.821 55.000 0.26 0.00 33.31 3.02
6324 6457 3.300388 TCCAGCTTAGGACATCTCGAAT 58.700 45.455 0.00 0.00 31.23 3.34
6325 6458 3.319405 TCCAGCTTAGGACATCTCGAATC 59.681 47.826 0.00 0.00 31.23 2.52
6327 6460 3.068732 CAGCTTAGGACATCTCGAATCCA 59.931 47.826 7.26 0.00 34.73 3.41
6328 6461 3.900601 AGCTTAGGACATCTCGAATCCAT 59.099 43.478 7.26 0.00 34.73 3.41
6329 6462 4.021544 AGCTTAGGACATCTCGAATCCATC 60.022 45.833 7.26 0.00 34.73 3.51
6341 6507 0.902531 AATCCATCTCCGGACGTGTT 59.097 50.000 0.00 0.00 38.07 3.32
6342 6508 0.902531 ATCCATCTCCGGACGTGTTT 59.097 50.000 0.00 0.00 38.07 2.83
6343 6509 0.682852 TCCATCTCCGGACGTGTTTT 59.317 50.000 0.00 0.00 0.00 2.43
6344 6510 1.071071 TCCATCTCCGGACGTGTTTTT 59.929 47.619 0.00 0.00 0.00 1.94
6376 6542 0.608640 AGTGGAGTCGGTCATCCAAC 59.391 55.000 0.00 0.00 46.87 3.77
6384 6550 0.837272 CGGTCATCCAACCCCATACT 59.163 55.000 0.00 0.00 35.79 2.12
6406 6572 2.094390 TCAAATGTCCGTCCTAGGTTCG 60.094 50.000 9.08 14.38 0.00 3.95
6407 6573 0.822164 AATGTCCGTCCTAGGTTCGG 59.178 55.000 28.74 28.74 44.76 4.30
6428 6594 3.285484 GTCTCCTCCATTTGACATGCAT 58.715 45.455 0.00 0.00 0.00 3.96
6487 6653 8.719560 ACATATGCAATAACAATCAAAATGCA 57.280 26.923 1.58 0.00 45.16 3.96
6488 6654 8.605746 ACATATGCAATAACAATCAAAATGCAC 58.394 29.630 1.58 0.00 44.06 4.57
6574 6740 2.014068 GCCAAACATCCTCCCTCTTCG 61.014 57.143 0.00 0.00 0.00 3.79
6576 6742 2.500098 CCAAACATCCTCCCTCTTCGTA 59.500 50.000 0.00 0.00 0.00 3.43
6583 6749 3.170717 TCCTCCCTCTTCGTATGTTTGT 58.829 45.455 0.00 0.00 0.00 2.83
6586 6752 1.737793 CCCTCTTCGTATGTTTGTGGC 59.262 52.381 0.00 0.00 0.00 5.01
6672 6847 2.352034 GCGAGACTACGAACATCTCTGA 59.648 50.000 0.00 0.00 37.35 3.27
6676 6851 4.072839 AGACTACGAACATCTCTGACACA 58.927 43.478 0.00 0.00 0.00 3.72
6687 6871 4.356405 TCTCTGACACATGTTCCATTGT 57.644 40.909 0.00 0.00 0.00 2.71
6700 6884 0.110295 CCATTGTGGTGGTGGACTGA 59.890 55.000 0.00 0.00 34.94 3.41
6749 6934 1.277557 AGCAGTGATTGGAGTGGAGAC 59.722 52.381 0.00 0.00 0.00 3.36
6752 6939 2.564504 CAGTGATTGGAGTGGAGACTGA 59.435 50.000 0.00 0.00 32.78 3.41
6796 6988 3.164268 AGTGCAGAAATGGCCAAATACA 58.836 40.909 10.96 0.18 0.00 2.29
6806 6998 1.993369 GCCAAATACACAGGCTCCGC 61.993 60.000 0.00 0.00 44.92 5.54
6843 7035 1.069823 CCAGGGATGTCGGATTCTGAG 59.930 57.143 0.00 0.00 0.00 3.35
6847 7039 1.757118 GGATGTCGGATTCTGAGGTGA 59.243 52.381 0.00 0.00 0.00 4.02
6891 7083 2.356069 CCTTCTTTAGATTTGCTCCGGC 59.644 50.000 0.00 0.00 39.26 6.13
6913 7105 1.243902 ACGGAAATTTGGACGCACAT 58.756 45.000 0.00 0.00 0.00 3.21
6916 7108 2.477189 CGGAAATTTGGACGCACATACC 60.477 50.000 0.00 0.00 0.00 2.73
6921 7113 1.647346 TTGGACGCACATACCGATTC 58.353 50.000 0.00 0.00 0.00 2.52
6922 7114 0.526739 TGGACGCACATACCGATTCG 60.527 55.000 0.00 0.00 0.00 3.34
6923 7115 1.558383 GACGCACATACCGATTCGC 59.442 57.895 0.00 0.00 0.00 4.70
6935 7127 2.009229 CGATTCGCGGACATTTGATG 57.991 50.000 6.13 0.00 36.03 3.07
6936 7128 1.333169 CGATTCGCGGACATTTGATGG 60.333 52.381 6.13 0.00 36.03 3.51
6937 7129 1.939934 GATTCGCGGACATTTGATGGA 59.060 47.619 6.13 0.00 33.60 3.41
6938 7130 1.083489 TTCGCGGACATTTGATGGAC 58.917 50.000 6.13 0.00 33.60 4.02
6939 7131 1.081556 TCGCGGACATTTGATGGACG 61.082 55.000 6.13 0.00 36.85 4.79
6952 7144 3.110178 GGACGGCGTTGAAGGACG 61.110 66.667 16.19 11.97 45.40 4.79
6967 7159 0.452122 GGACGCAAAATGTTCGGACG 60.452 55.000 0.00 0.00 0.00 4.79
6986 7178 1.666599 CGACATGGTCCGAACGTTACA 60.667 52.381 0.00 0.00 0.00 2.41
6999 7191 5.334569 CCGAACGTTACAGACCATTTGATTT 60.335 40.000 0.00 0.00 0.00 2.17
7000 7192 5.563751 CGAACGTTACAGACCATTTGATTTG 59.436 40.000 0.00 0.00 0.00 2.32
7001 7193 6.565060 CGAACGTTACAGACCATTTGATTTGA 60.565 38.462 0.00 0.00 0.00 2.69
7002 7194 6.817765 ACGTTACAGACCATTTGATTTGAT 57.182 33.333 0.00 0.00 0.00 2.57
7017 7240 5.258841 TGATTTGATGACTTTGGAGATGCT 58.741 37.500 0.00 0.00 0.00 3.79
7086 7309 1.446618 CGTAACCTACGTGTGCCCC 60.447 63.158 0.00 0.00 46.41 5.80
7099 7322 0.463654 GTGCCCCTAATCGCATGTCA 60.464 55.000 0.00 0.00 37.33 3.58
7114 7337 3.181510 GCATGTCAAGATTTGGTCGGTAC 60.182 47.826 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.539674 TCGTGAATATTCTTGAATGTAACATCG 58.460 33.333 16.24 9.27 0.00 3.84
14 15 9.855361 CTCGTGAATATTCTTGAATGTAACATC 57.145 33.333 16.24 0.00 0.00 3.06
19 20 9.430623 TGAAACTCGTGAATATTCTTGAATGTA 57.569 29.630 16.24 0.00 0.00 2.29
187 194 7.859325 ACTACACAAACACTCTTTTACATGT 57.141 32.000 2.69 2.69 0.00 3.21
361 370 5.047660 ACCCAATGTACATTTTAACGCACAT 60.048 36.000 18.50 0.00 0.00 3.21
482 502 2.903855 CTGGCCCATTAGCGCAGG 60.904 66.667 11.47 5.62 31.39 4.85
498 518 1.750778 CGGTATTTGCTGAATTGGGCT 59.249 47.619 0.00 0.00 0.00 5.19
527 547 4.441634 CCGGTCTATTTTGAACCTCGAGAT 60.442 45.833 15.71 1.50 0.00 2.75
532 552 3.622166 TCCCGGTCTATTTTGAACCTC 57.378 47.619 0.00 0.00 0.00 3.85
538 558 6.163135 ACTCTCTAATCCCGGTCTATTTTG 57.837 41.667 0.00 0.00 0.00 2.44
572 592 6.131972 TCTGAACTCTCAATCCCAGAAATT 57.868 37.500 0.00 0.00 0.00 1.82
578 598 4.347876 TCAAACTCTGAACTCTCAATCCCA 59.652 41.667 0.00 0.00 0.00 4.37
614 634 8.264347 AGTCCAAAACAAACCTTGAATTTGTAT 58.736 29.630 3.72 0.00 46.88 2.29
623 643 4.453819 TGCAAAAGTCCAAAACAAACCTTG 59.546 37.500 0.00 0.00 0.00 3.61
644 664 4.011023 TCTAGGCCTATAGAGACGAATGC 58.989 47.826 14.30 0.00 0.00 3.56
653 673 3.261083 TCCTCTGCTCTAGGCCTATAGA 58.739 50.000 25.33 16.02 40.92 1.98
654 674 3.265737 TCTCCTCTGCTCTAGGCCTATAG 59.734 52.174 18.62 18.62 40.92 1.31
655 675 3.261083 TCTCCTCTGCTCTAGGCCTATA 58.739 50.000 14.30 5.13 40.92 1.31
656 676 2.069775 TCTCCTCTGCTCTAGGCCTAT 58.930 52.381 14.30 0.00 40.92 2.57
657 677 1.524037 TCTCCTCTGCTCTAGGCCTA 58.476 55.000 13.09 13.09 40.92 3.93
666 686 0.617935 GCCCTTCTTTCTCCTCTGCT 59.382 55.000 0.00 0.00 0.00 4.24
708 729 1.271597 GCTGAGTTTGACCCACCTCAT 60.272 52.381 0.00 0.00 33.77 2.90
709 730 0.108585 GCTGAGTTTGACCCACCTCA 59.891 55.000 0.00 0.00 33.22 3.86
819 840 1.903877 CTCGATGTGGGCCTCCAAGT 61.904 60.000 4.53 0.00 46.04 3.16
831 852 1.220206 CTTGCTGCCCTCTCGATGT 59.780 57.895 0.00 0.00 0.00 3.06
883 906 2.739671 GGCGACGCGGGTTTTAGT 60.740 61.111 14.61 0.00 0.00 2.24
953 977 1.420514 GAGGATTTAGGGGTGGGTAGC 59.579 57.143 0.00 0.00 0.00 3.58
954 978 2.055579 GGAGGATTTAGGGGTGGGTAG 58.944 57.143 0.00 0.00 0.00 3.18
955 979 1.345734 GGGAGGATTTAGGGGTGGGTA 60.346 57.143 0.00 0.00 0.00 3.69
956 980 0.626574 GGGAGGATTTAGGGGTGGGT 60.627 60.000 0.00 0.00 0.00 4.51
959 983 0.468648 GTCGGGAGGATTTAGGGGTG 59.531 60.000 0.00 0.00 0.00 4.61
1139 1173 0.828343 GATACTCCCCTCCCTGGTCG 60.828 65.000 0.00 0.00 0.00 4.79
1242 1277 5.844004 ACAATCGACTAATAGCTAACCCAG 58.156 41.667 0.00 0.00 0.00 4.45
1250 1285 9.193133 TGCTTAGAAATACAATCGACTAATAGC 57.807 33.333 0.00 0.00 0.00 2.97
1282 1321 1.546029 GGTTTCTTGCAGGGTCAATCC 59.454 52.381 0.00 0.00 0.00 3.01
1348 1388 4.080299 ACATGTAAGAGAACAGGAATCCCC 60.080 45.833 0.00 0.00 34.85 4.81
1349 1389 5.104259 ACATGTAAGAGAACAGGAATCCC 57.896 43.478 0.00 0.00 34.85 3.85
1350 1390 5.940470 ACAACATGTAAGAGAACAGGAATCC 59.060 40.000 0.00 0.00 34.85 3.01
1359 1399 7.284489 AGCTAACCAAAACAACATGTAAGAGAA 59.716 33.333 0.00 0.00 0.00 2.87
1505 1560 4.720273 ACGGGGAAGAGGAACATAACTTAT 59.280 41.667 0.00 0.00 0.00 1.73
1523 1578 0.733729 TGTGAAACGAACAAACGGGG 59.266 50.000 0.00 0.00 42.39 5.73
1557 1613 6.207691 ACATTTCCCTGAATTTTATCCACG 57.792 37.500 0.00 0.00 0.00 4.94
1575 1631 4.714308 TCCCACTCAACTTTTGGAACATTT 59.286 37.500 0.00 0.00 39.30 2.32
1578 1634 3.374042 TCCCACTCAACTTTTGGAACA 57.626 42.857 0.00 0.00 31.39 3.18
1602 1658 8.306038 CCATTGTCAAAGTAATGAATTCCTTCA 58.694 33.333 2.27 0.00 45.15 3.02
1611 1667 3.438781 GCGGTCCATTGTCAAAGTAATGA 59.561 43.478 0.00 0.00 36.61 2.57
1727 1785 7.567622 AGGGCAATACCTCACTAGTAATTTCTA 59.432 37.037 0.00 0.00 35.43 2.10
1738 1796 2.269940 AGACAAGGGCAATACCTCACT 58.730 47.619 0.00 0.00 40.87 3.41
1740 1798 4.473196 TCATAAGACAAGGGCAATACCTCA 59.527 41.667 0.00 0.00 40.87 3.86
1741 1799 5.036117 TCATAAGACAAGGGCAATACCTC 57.964 43.478 0.00 0.00 40.87 3.85
1742 1800 4.475016 ACTCATAAGACAAGGGCAATACCT 59.525 41.667 0.00 0.00 44.56 3.08
1750 1810 9.892130 AGAAAAATACTACTCATAAGACAAGGG 57.108 33.333 0.00 0.00 0.00 3.95
1867 1927 3.334691 TGCTATACAGGAGCAACAACAC 58.665 45.455 0.00 0.00 46.71 3.32
1974 2034 3.008375 AGAAGAAGAATACTGGCTGCACA 59.992 43.478 0.50 0.00 0.00 4.57
1989 2049 4.205065 AGCCTGAAGTCATGAGAAGAAG 57.795 45.455 0.00 0.00 0.00 2.85
2045 2109 2.825205 AGTGCATTGTTTTCAGGCAAC 58.175 42.857 0.00 0.00 41.20 4.17
2240 2308 3.199071 ACGCCTGAACATCTTAATACCCA 59.801 43.478 0.00 0.00 0.00 4.51
2299 2367 8.627403 GGTGTATAAGCACTAGTGTATTGTCTA 58.373 37.037 23.44 9.88 39.21 2.59
2301 2369 7.262772 TGGTGTATAAGCACTAGTGTATTGTC 58.737 38.462 23.44 11.31 39.21 3.18
2369 2474 3.980022 TCACTAGAATATTGATGCCCCCA 59.020 43.478 0.00 0.00 0.00 4.96
2409 2514 9.397280 TCACGTTAATTATGGAAAATATCACCA 57.603 29.630 0.00 0.00 38.09 4.17
2417 2522 6.544564 GGGAGGATCACGTTAATTATGGAAAA 59.455 38.462 0.00 0.00 36.25 2.29
2527 2632 3.444034 TGGAGAGTATCAGTCTTTGGACG 59.556 47.826 0.00 0.00 46.29 4.79
2550 2655 3.815401 GGACGGGAGGATCATGTTAATTG 59.185 47.826 0.00 0.00 36.25 2.32
2638 2743 4.609693 AGTCGTGAACTCGTGATGGTACA 61.610 47.826 0.00 0.00 36.40 2.90
2650 2755 1.583054 GGAGTTTGCAGTCGTGAACT 58.417 50.000 0.00 0.00 39.44 3.01
2651 2756 0.586802 GGGAGTTTGCAGTCGTGAAC 59.413 55.000 0.00 0.00 0.00 3.18
2652 2757 0.468226 AGGGAGTTTGCAGTCGTGAA 59.532 50.000 0.00 0.00 0.00 3.18
2653 2758 0.468226 AAGGGAGTTTGCAGTCGTGA 59.532 50.000 0.00 0.00 0.00 4.35
2654 2759 1.308998 AAAGGGAGTTTGCAGTCGTG 58.691 50.000 0.00 0.00 0.00 4.35
2655 2760 2.052782 AAAAGGGAGTTTGCAGTCGT 57.947 45.000 0.00 0.00 0.00 4.34
2656 2761 3.314080 TGTTAAAAGGGAGTTTGCAGTCG 59.686 43.478 0.00 0.00 0.00 4.18
2657 2762 4.338400 ACTGTTAAAAGGGAGTTTGCAGTC 59.662 41.667 0.00 0.00 35.25 3.51
2756 2861 3.726607 CCACTTGTTGGCAAAATAGCAA 58.273 40.909 0.00 0.37 39.07 3.91
2876 2981 1.088306 CCTAGGGCTAGATAGTCGCG 58.912 60.000 0.00 0.00 35.21 5.87
2913 3018 6.980978 GCTCAGTAATATAGTGAAGAACAGCA 59.019 38.462 0.00 0.00 37.65 4.41
3133 3238 3.007290 TGAGTGGTCCAGAGAAGTCAATG 59.993 47.826 0.00 0.00 0.00 2.82
3353 3458 5.183140 GGGAGTTATAGCTTCTTTTGCACAA 59.817 40.000 0.00 0.00 0.00 3.33
3427 3535 1.502231 TCAGCAGTTCTCGAAGTTGC 58.498 50.000 7.58 7.58 34.30 4.17
3533 3641 7.551262 AGTGGGAAAATTTTAAAGTTCAACACC 59.449 33.333 2.75 0.00 33.50 4.16
3643 3752 7.732996 TGAAGTAAAAGTGGATAGCTATACCC 58.267 38.462 13.61 8.85 0.00 3.69
3723 3836 4.889409 TGAGATCAGTTGGCAAGAAAGTTT 59.111 37.500 0.00 0.00 0.00 2.66
3729 3842 4.219070 CCAAATTGAGATCAGTTGGCAAGA 59.781 41.667 0.00 0.00 36.62 3.02
3820 3933 0.539051 ACAAGATTAGCAGCCTCGCT 59.461 50.000 0.00 0.00 46.26 4.93
3912 4025 3.997021 AGATTAAGTGGAAGACAAGTGCG 59.003 43.478 0.00 0.00 0.00 5.34
3968 4081 1.611491 GAAAAATGGAACCGGCACAGA 59.389 47.619 0.00 0.00 0.00 3.41
4028 4141 0.622136 TGGACGGCTACTCTGGTCTA 59.378 55.000 0.00 0.00 0.00 2.59
4238 4351 3.699025 AAAAGGGGACAAGGAAAAGGA 57.301 42.857 0.00 0.00 0.00 3.36
4239 4352 3.071023 GGAAAAAGGGGACAAGGAAAAGG 59.929 47.826 0.00 0.00 0.00 3.11
4240 4353 3.967326 AGGAAAAAGGGGACAAGGAAAAG 59.033 43.478 0.00 0.00 0.00 2.27
4241 4354 4.002256 AGGAAAAAGGGGACAAGGAAAA 57.998 40.909 0.00 0.00 0.00 2.29
4242 4355 3.699025 AGGAAAAAGGGGACAAGGAAA 57.301 42.857 0.00 0.00 0.00 3.13
4243 4356 3.304829 CAAGGAAAAAGGGGACAAGGAA 58.695 45.455 0.00 0.00 0.00 3.36
4244 4357 2.246327 ACAAGGAAAAAGGGGACAAGGA 59.754 45.455 0.00 0.00 0.00 3.36
4245 4358 2.628178 GACAAGGAAAAAGGGGACAAGG 59.372 50.000 0.00 0.00 0.00 3.61
4246 4359 2.628178 GGACAAGGAAAAAGGGGACAAG 59.372 50.000 0.00 0.00 0.00 3.16
4247 4360 2.673258 GGACAAGGAAAAAGGGGACAA 58.327 47.619 0.00 0.00 0.00 3.18
4248 4361 1.133294 GGGACAAGGAAAAAGGGGACA 60.133 52.381 0.00 0.00 0.00 4.02
4249 4362 1.629043 GGGACAAGGAAAAAGGGGAC 58.371 55.000 0.00 0.00 0.00 4.46
4250 4363 0.485543 GGGGACAAGGAAAAAGGGGA 59.514 55.000 0.00 0.00 0.00 4.81
4251 4364 0.487325 AGGGGACAAGGAAAAAGGGG 59.513 55.000 0.00 0.00 0.00 4.79
4252 4365 1.133167 ACAGGGGACAAGGAAAAAGGG 60.133 52.381 0.00 0.00 0.00 3.95
4253 4366 2.158460 AGACAGGGGACAAGGAAAAAGG 60.158 50.000 0.00 0.00 0.00 3.11
4254 4367 3.229697 AGACAGGGGACAAGGAAAAAG 57.770 47.619 0.00 0.00 0.00 2.27
4255 4368 3.720002 ACTAGACAGGGGACAAGGAAAAA 59.280 43.478 0.00 0.00 0.00 1.94
4310 4423 2.106338 TCTCTCATTGTTTCTGCCCACA 59.894 45.455 0.00 0.00 0.00 4.17
4354 4467 6.596888 CCATTATGCATATCAAGTGGTCCTAG 59.403 42.308 7.36 0.00 0.00 3.02
4365 4478 2.885137 GCCCAGCCCATTATGCATATCA 60.885 50.000 7.36 0.00 0.00 2.15
4561 4674 6.712095 ACTTCATGCTACAGAAAATTGTCTCA 59.288 34.615 0.00 0.00 32.56 3.27
4572 4685 5.278709 GCAGATAGCTACTTCATGCTACAGA 60.279 44.000 0.00 0.00 43.38 3.41
4588 4701 0.873743 GGCGTGTCTGAGCAGATAGC 60.874 60.000 3.19 9.25 46.19 2.97
4635 4749 1.388093 CTCGAGCATGTTCACAGAACG 59.612 52.381 10.36 0.00 0.00 3.95
4683 4797 3.181470 GCAAGTAAAACCAAAAGGAGCCA 60.181 43.478 0.00 0.00 0.00 4.75
4684 4798 3.181470 TGCAAGTAAAACCAAAAGGAGCC 60.181 43.478 0.00 0.00 0.00 4.70
4685 4799 4.053469 TGCAAGTAAAACCAAAAGGAGC 57.947 40.909 0.00 0.00 0.00 4.70
4827 4941 2.549992 CCCTTCGGTTGAATGACTCACA 60.550 50.000 0.00 0.00 32.21 3.58
4828 4942 2.076863 CCCTTCGGTTGAATGACTCAC 58.923 52.381 0.00 0.00 32.21 3.51
4829 4943 1.003118 CCCCTTCGGTTGAATGACTCA 59.997 52.381 0.00 0.00 32.61 3.41
4830 4944 1.278127 TCCCCTTCGGTTGAATGACTC 59.722 52.381 0.00 0.00 32.61 3.36
4831 4945 1.279271 CTCCCCTTCGGTTGAATGACT 59.721 52.381 0.00 0.00 32.61 3.41
4832 4946 1.739067 CTCCCCTTCGGTTGAATGAC 58.261 55.000 0.00 0.00 32.61 3.06
4833 4947 0.035439 GCTCCCCTTCGGTTGAATGA 60.035 55.000 0.00 0.00 32.61 2.57
4834 4948 1.032114 GGCTCCCCTTCGGTTGAATG 61.032 60.000 0.00 0.00 32.61 2.67
4835 4949 1.208165 AGGCTCCCCTTCGGTTGAAT 61.208 55.000 0.00 0.00 38.74 2.57
4836 4950 1.846124 AGGCTCCCCTTCGGTTGAA 60.846 57.895 0.00 0.00 38.74 2.69
4837 4951 2.203938 AGGCTCCCCTTCGGTTGA 60.204 61.111 0.00 0.00 38.74 3.18
4849 4963 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
4850 4964 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
4851 4965 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
4852 4966 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
4853 4967 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
4854 4968 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
4855 4969 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
4856 4970 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
4860 4974 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
4861 4975 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
4862 4976 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
4863 4977 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
4864 4978 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
4865 4979 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
4866 4980 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
4867 4981 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
4868 4982 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
4869 4983 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
4870 4984 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
4871 4985 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
4872 4986 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
4873 4987 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
4874 4988 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
4875 4989 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
4887 5001 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
4888 5002 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
4889 5003 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
4890 5004 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
4891 5005 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
4892 5006 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
4893 5007 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
4894 5008 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
4895 5009 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
4896 5010 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
4897 5011 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
4898 5012 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
4899 5013 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
4900 5014 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
4901 5015 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
4902 5016 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
4903 5017 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
4904 5018 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
4905 5019 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
4906 5020 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
4907 5021 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
4908 5022 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
4920 5034 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
4921 5035 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
4922 5036 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
4923 5037 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
4924 5038 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
4925 5039 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
4926 5040 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
4927 5041 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
4928 5042 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
4929 5043 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
4930 5044 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
4931 5045 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
4932 5046 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
4933 5047 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
4934 5048 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
4935 5049 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
4936 5050 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
4937 5051 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
4938 5052 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
4939 5053 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
4940 5054 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
4941 5055 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
4942 5056 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
4943 5057 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
4944 5058 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
4945 5059 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
4946 5060 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
4956 5070 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
4957 5071 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
4958 5072 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
4959 5073 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
4960 5074 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
4961 5075 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
4962 5076 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
4963 5077 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
4964 5078 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
4965 5079 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
4966 5080 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
4967 5081 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
4968 5082 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
4969 5083 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
4970 5084 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
4971 5085 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
4972 5086 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
4973 5087 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
4974 5088 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
4986 5100 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
4989 5103 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
4990 5104 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
4991 5105 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
4992 5106 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
4998 5112 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
4999 5113 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
5000 5114 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
5001 5115 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
5002 5116 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
5027 5141 8.637099 TGATATTGGTTGAATGACTCACAAAAA 58.363 29.630 0.00 0.00 32.21 1.94
5028 5142 8.175925 TGATATTGGTTGAATGACTCACAAAA 57.824 30.769 0.00 0.00 32.21 2.44
5029 5143 7.757941 TGATATTGGTTGAATGACTCACAAA 57.242 32.000 0.00 0.00 32.21 2.83
5030 5144 7.394077 ACATGATATTGGTTGAATGACTCACAA 59.606 33.333 0.00 0.00 32.21 3.33
5082 5196 4.040755 AGGACTTGGATAACAGTGGCTAT 58.959 43.478 0.00 0.00 0.00 2.97
5094 5208 2.030027 TCACCAGTCAGGACTTGGAT 57.970 50.000 18.48 6.25 40.20 3.41
5142 5256 8.034215 CCAAGGCACAGTTTAATTATGATCAAA 58.966 33.333 0.00 0.00 0.00 2.69
5146 5260 5.363580 CCCCAAGGCACAGTTTAATTATGAT 59.636 40.000 0.00 0.00 0.00 2.45
5162 5276 2.749076 GCATTGAAATTTTCCCCAAGGC 59.251 45.455 10.06 10.06 38.73 4.35
5168 5282 3.747529 CCAGTGTGCATTGAAATTTTCCC 59.252 43.478 6.68 0.00 0.00 3.97
5180 5294 2.878406 GAGTGTTACAACCAGTGTGCAT 59.122 45.455 0.00 0.00 41.89 3.96
5185 5299 6.671614 TGTTAAAGAGTGTTACAACCAGTG 57.328 37.500 0.00 0.00 0.00 3.66
5234 5351 6.706055 TCGAGTTACAACAAATCTGTCATC 57.294 37.500 0.00 0.00 33.45 2.92
5256 5373 2.225727 GTCACGAAACCCTGTGGAAATC 59.774 50.000 0.00 0.00 36.74 2.17
5261 5378 1.147376 TGGTCACGAAACCCTGTGG 59.853 57.895 8.20 0.00 38.65 4.17
5262 5379 0.179056 AGTGGTCACGAAACCCTGTG 60.179 55.000 8.20 0.00 38.65 3.66
5274 5391 4.841813 TGTCCCTTATAAAGTGAGTGGTCA 59.158 41.667 0.00 0.00 0.00 4.02
5289 5406 2.107552 CAGGAAAACCTGGTGTCCCTTA 59.892 50.000 20.73 0.00 34.47 2.69
5454 5571 3.952323 AGCAACATAGGCTAGACTCGTAA 59.048 43.478 0.00 0.00 40.47 3.18
5487 5604 0.877071 CAGGCACAATCTCGCTGTTT 59.123 50.000 0.00 0.00 0.00 2.83
5535 5652 1.872952 TCAACGGCATGAACAGAACAG 59.127 47.619 0.00 0.00 0.00 3.16
5568 5685 4.692228 TCCCAAACTTTTTGTTGATGAGC 58.308 39.130 0.00 0.00 39.13 4.26
5601 5718 3.122297 GACAGGAAGAGATTCAGATGCG 58.878 50.000 0.00 0.00 0.00 4.73
5620 5737 5.179368 TCAGATGTGGTCATTCGAAAAAGAC 59.821 40.000 16.05 16.05 34.06 3.01
5751 5869 5.392380 GGTCGTCTTCTCGGTGATACTAAAA 60.392 44.000 0.00 0.00 0.00 1.52
5753 5871 3.624861 GGTCGTCTTCTCGGTGATACTAA 59.375 47.826 0.00 0.00 0.00 2.24
5756 5874 1.267932 CGGTCGTCTTCTCGGTGATAC 60.268 57.143 0.00 0.00 0.00 2.24
5763 5881 2.257974 TTTGATCGGTCGTCTTCTCG 57.742 50.000 0.00 0.00 0.00 4.04
5766 5884 5.470845 AATGAATTTGATCGGTCGTCTTC 57.529 39.130 0.00 0.00 0.00 2.87
5769 5887 4.809426 ACCTAATGAATTTGATCGGTCGTC 59.191 41.667 0.00 0.00 0.00 4.20
5771 5889 5.734855 AACCTAATGAATTTGATCGGTCG 57.265 39.130 0.00 0.00 0.00 4.79
5772 5890 8.209917 AGTAAACCTAATGAATTTGATCGGTC 57.790 34.615 0.00 0.00 0.00 4.79
5779 5897 8.081633 TGCACTCAAGTAAACCTAATGAATTTG 58.918 33.333 0.00 0.00 0.00 2.32
5790 5908 3.064207 TGATCGTGCACTCAAGTAAACC 58.936 45.455 16.19 0.00 0.00 3.27
5821 5939 9.274206 GCTTTGCTTATAGCCTTATACTAAACT 57.726 33.333 0.00 0.00 41.51 2.66
5831 5949 3.955471 TGACTGCTTTGCTTATAGCCTT 58.045 40.909 0.00 0.00 41.51 4.35
5833 5951 4.096984 ACATTGACTGCTTTGCTTATAGCC 59.903 41.667 0.00 0.00 41.51 3.93
5834 5952 5.032863 CACATTGACTGCTTTGCTTATAGC 58.967 41.667 0.00 0.00 42.82 2.97
5835 5953 6.025896 CACACATTGACTGCTTTGCTTATAG 58.974 40.000 0.00 0.00 0.00 1.31
5836 5954 5.473162 ACACACATTGACTGCTTTGCTTATA 59.527 36.000 0.00 0.00 0.00 0.98
5837 5955 4.279169 ACACACATTGACTGCTTTGCTTAT 59.721 37.500 0.00 0.00 0.00 1.73
5868 5991 0.976641 AGTCAGCCCGAGTTGAATCA 59.023 50.000 0.00 0.00 34.74 2.57
5890 6013 6.536688 CCAAGAAAAACACAAAAGCAAGAAG 58.463 36.000 0.00 0.00 0.00 2.85
5891 6014 5.106752 GCCAAGAAAAACACAAAAGCAAGAA 60.107 36.000 0.00 0.00 0.00 2.52
6152 6275 5.687166 AAATCTTGATGACCCTACGGTAA 57.313 39.130 0.00 0.00 44.88 2.85
6196 6319 4.708421 ACTACCACCACAATACATAGACGT 59.292 41.667 0.00 0.00 0.00 4.34
6255 6388 3.422417 TGAATTTCGGACAAAACGCAA 57.578 38.095 0.00 0.00 0.00 4.85
6308 6441 5.336372 GGAGATGGATTCGAGATGTCCTAAG 60.336 48.000 8.89 0.00 33.15 2.18
6314 6447 1.615883 CCGGAGATGGATTCGAGATGT 59.384 52.381 0.00 0.00 0.00 3.06
6321 6454 0.460311 ACACGTCCGGAGATGGATTC 59.540 55.000 3.06 0.00 40.91 2.52
6324 6457 0.682852 AAAACACGTCCGGAGATGGA 59.317 50.000 3.06 0.00 32.90 3.41
6325 6458 1.196808 CAAAAACACGTCCGGAGATGG 59.803 52.381 3.06 0.00 32.90 3.51
6327 6460 0.872388 GCAAAAACACGTCCGGAGAT 59.128 50.000 3.06 0.00 0.00 2.75
6328 6461 0.462225 TGCAAAAACACGTCCGGAGA 60.462 50.000 3.06 0.00 0.00 3.71
6329 6462 0.041312 CTGCAAAAACACGTCCGGAG 60.041 55.000 3.06 1.12 0.00 4.63
6376 6542 2.943033 GACGGACATTTGAAGTATGGGG 59.057 50.000 0.00 0.00 0.00 4.96
6384 6550 3.615592 CGAACCTAGGACGGACATTTGAA 60.616 47.826 17.98 0.00 0.00 2.69
6406 6572 2.019984 GCATGTCAAATGGAGGAGACC 58.980 52.381 0.00 0.00 0.00 3.85
6407 6573 2.715046 TGCATGTCAAATGGAGGAGAC 58.285 47.619 0.00 0.00 0.00 3.36
6487 6653 8.519799 AAACTTTATGAATATCCAACATCGGT 57.480 30.769 0.00 0.00 0.00 4.69
6514 6680 7.282901 GCAATTTTTGGGCTTGGATAAATGTAT 59.717 33.333 0.00 0.00 0.00 2.29
6518 6684 4.949238 GGCAATTTTTGGGCTTGGATAAAT 59.051 37.500 0.00 0.00 0.00 1.40
6520 6686 3.328931 TGGCAATTTTTGGGCTTGGATAA 59.671 39.130 0.00 0.00 0.00 1.75
6522 6688 1.704070 TGGCAATTTTTGGGCTTGGAT 59.296 42.857 0.00 0.00 0.00 3.41
6524 6690 1.202794 ACTGGCAATTTTTGGGCTTGG 60.203 47.619 0.00 0.00 0.00 3.61
6574 6740 2.483288 CCGCCGCCACAAACATAC 59.517 61.111 0.00 0.00 0.00 2.39
6576 6742 3.554696 TACCCGCCGCCACAAACAT 62.555 57.895 0.00 0.00 0.00 2.71
6643 6818 4.208686 GTAGTCTCGCCGGGCCTG 62.209 72.222 14.55 3.88 0.00 4.85
6649 6824 0.377554 AGATGTTCGTAGTCTCGCCG 59.622 55.000 0.00 0.00 0.00 6.46
6654 6829 4.072839 TGTGTCAGAGATGTTCGTAGTCT 58.927 43.478 0.00 0.00 0.00 3.24
6687 6871 1.208706 TGTTTCTCAGTCCACCACCA 58.791 50.000 0.00 0.00 0.00 4.17
6700 6884 3.377172 CACTTGAGTTCCCGTTTGTTTCT 59.623 43.478 0.00 0.00 0.00 2.52
6734 6919 2.182827 CCTCAGTCTCCACTCCAATCA 58.817 52.381 0.00 0.00 0.00 2.57
6737 6922 0.487325 TCCCTCAGTCTCCACTCCAA 59.513 55.000 0.00 0.00 0.00 3.53
6749 6934 2.771328 AAAGCCGCCCTTTCCCTCAG 62.771 60.000 0.00 0.00 39.55 3.35
6780 6972 2.497273 GCCTGTGTATTTGGCCATTTCT 59.503 45.455 6.09 0.00 40.71 2.52
6829 7021 1.135139 CGTCACCTCAGAATCCGACAT 59.865 52.381 0.00 0.00 0.00 3.06
6898 7090 2.428491 TCGGTATGTGCGTCCAAATTT 58.572 42.857 0.00 0.00 0.00 1.82
6916 7108 1.333169 CCATCAAATGTCCGCGAATCG 60.333 52.381 8.23 0.00 38.08 3.34
6921 7113 1.348250 CGTCCATCAAATGTCCGCG 59.652 57.895 0.00 0.00 0.00 6.46
6922 7114 1.721487 CCGTCCATCAAATGTCCGC 59.279 57.895 0.00 0.00 0.00 5.54
6923 7115 1.721487 GCCGTCCATCAAATGTCCG 59.279 57.895 0.00 0.00 0.00 4.79
6927 7119 0.801872 TCAACGCCGTCCATCAAATG 59.198 50.000 0.00 0.00 0.00 2.32
6928 7120 1.468520 CTTCAACGCCGTCCATCAAAT 59.531 47.619 0.00 0.00 0.00 2.32
6929 7121 0.871722 CTTCAACGCCGTCCATCAAA 59.128 50.000 0.00 0.00 0.00 2.69
6930 7122 0.953471 CCTTCAACGCCGTCCATCAA 60.953 55.000 0.00 0.00 0.00 2.57
6931 7123 1.375396 CCTTCAACGCCGTCCATCA 60.375 57.895 0.00 0.00 0.00 3.07
6932 7124 1.079405 TCCTTCAACGCCGTCCATC 60.079 57.895 0.00 0.00 0.00 3.51
6934 7126 2.029964 GTCCTTCAACGCCGTCCA 59.970 61.111 0.00 0.00 0.00 4.02
6935 7127 3.110178 CGTCCTTCAACGCCGTCC 61.110 66.667 0.00 0.00 35.64 4.79
6952 7144 2.241722 CATGTCGTCCGAACATTTTGC 58.758 47.619 0.00 0.00 0.00 3.68
6967 7159 1.990563 CTGTAACGTTCGGACCATGTC 59.009 52.381 2.82 0.00 0.00 3.06
6986 7178 6.494491 TCCAAAGTCATCAAATCAAATGGTCT 59.506 34.615 0.00 0.00 0.00 3.85
7086 7309 5.490139 ACCAAATCTTGACATGCGATTAG 57.510 39.130 0.00 0.00 0.00 1.73
7099 7322 2.933928 GCTTCCGTACCGACCAAATCTT 60.934 50.000 0.00 0.00 0.00 2.40
7114 7337 1.541147 TCTTTTCCAATGCTGCTTCCG 59.459 47.619 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.