Multiple sequence alignment - TraesCS2B01G212300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G212300 chr2B 100.000 3518 0 0 1 3518 196195295 196191778 0.000000e+00 6497.0
1 TraesCS2B01G212300 chr2D 95.218 2781 81 20 327 3096 138249393 138246654 0.000000e+00 4351.0
2 TraesCS2B01G212300 chr2D 86.195 297 35 4 3090 3380 138246468 138246172 2.040000e-82 316.0
3 TraesCS2B01G212300 chr2D 95.238 42 2 0 3477 3518 138245993 138245952 2.270000e-07 67.6
4 TraesCS2B01G212300 chr2A 94.778 2834 78 25 327 3142 163668747 163671528 0.000000e+00 4349.0
5 TraesCS2B01G212300 chr2A 95.679 324 14 0 1 324 624970314 624970637 4.020000e-144 521.0
6 TraesCS2B01G212300 chr2A 88.066 243 28 1 3133 3374 163671549 163671791 1.600000e-73 287.0
7 TraesCS2B01G212300 chr1A 97.840 324 7 0 1 324 365531573 365531896 8.530000e-156 560.0
8 TraesCS2B01G212300 chr7D 97.833 323 7 0 1 323 140302049 140302371 3.070000e-155 558.0
9 TraesCS2B01G212300 chr5B 97.840 324 5 1 1 322 437184595 437184272 3.070000e-155 558.0
10 TraesCS2B01G212300 chr4B 94.910 334 15 1 1 332 581520636 581520303 4.020000e-144 521.0
11 TraesCS2B01G212300 chr4B 77.255 255 45 12 3129 3380 17876768 17876524 1.700000e-28 137.0
12 TraesCS2B01G212300 chr6B 95.706 326 9 1 1 326 550368696 550368376 1.450000e-143 520.0
13 TraesCS2B01G212300 chr6A 93.976 332 15 4 1 331 93806745 93807072 6.780000e-137 497.0
14 TraesCS2B01G212300 chr5A 92.138 318 25 0 6 323 659201802 659201485 1.930000e-122 449.0
15 TraesCS2B01G212300 chrUn 91.875 320 26 0 3 322 30341474 30341793 6.930000e-122 448.0
16 TraesCS2B01G212300 chr1D 79.116 249 50 2 3130 3376 340526920 340526672 1.680000e-38 171.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G212300 chr2B 196191778 196195295 3517 True 6497.0 6497 100.000 1 3518 1 chr2B.!!$R1 3517
1 TraesCS2B01G212300 chr2D 138245952 138249393 3441 True 1578.2 4351 92.217 327 3518 3 chr2D.!!$R1 3191
2 TraesCS2B01G212300 chr2A 163668747 163671791 3044 False 2318.0 4349 91.422 327 3374 2 chr2A.!!$F2 3047

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.032515 TGGACATAGGAGGAAGGCGA 60.033 55.0 0.00 0.0 0.0 5.54 F
209 210 0.037326 TTCTTTGATGCCGCGAGAGT 60.037 50.0 8.23 0.0 0.0 3.24 F
251 252 0.037590 TGTGTGAGGTGTAATGGCCC 59.962 55.0 0.00 0.0 0.0 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1401 1423 0.238289 CGATGTTGTTGAGCACCCAC 59.762 55.000 0.0 0.0 0.0 4.61 R
2121 2143 1.519455 CGTGAAGTCGGCATCCTCC 60.519 63.158 0.0 0.0 0.0 4.30 R
2717 2740 5.055642 TCTACGGTGTATTTGTGAGAGTG 57.944 43.478 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.125106 CGGCAGTGGTCCTTAGGC 60.125 66.667 0.00 0.00 0.00 3.93
18 19 2.125106 GGCAGTGGTCCTTAGGCG 60.125 66.667 0.00 0.00 0.00 5.52
19 20 2.663196 GCAGTGGTCCTTAGGCGT 59.337 61.111 0.00 0.00 0.00 5.68
20 21 1.741770 GCAGTGGTCCTTAGGCGTG 60.742 63.158 0.00 0.00 0.00 5.34
21 22 1.079127 CAGTGGTCCTTAGGCGTGG 60.079 63.158 0.00 0.00 0.00 4.94
22 23 1.229082 AGTGGTCCTTAGGCGTGGA 60.229 57.895 0.00 0.00 0.00 4.02
28 29 1.410004 TCCTTAGGCGTGGACATAGG 58.590 55.000 0.00 0.00 0.00 2.57
29 30 1.063492 TCCTTAGGCGTGGACATAGGA 60.063 52.381 0.00 0.00 0.00 2.94
30 31 1.341531 CCTTAGGCGTGGACATAGGAG 59.658 57.143 0.00 0.00 0.00 3.69
31 32 1.341531 CTTAGGCGTGGACATAGGAGG 59.658 57.143 0.00 0.00 0.00 4.30
32 33 0.554305 TAGGCGTGGACATAGGAGGA 59.446 55.000 0.00 0.00 0.00 3.71
33 34 0.325296 AGGCGTGGACATAGGAGGAA 60.325 55.000 0.00 0.00 0.00 3.36
34 35 0.105039 GGCGTGGACATAGGAGGAAG 59.895 60.000 0.00 0.00 0.00 3.46
35 36 0.105039 GCGTGGACATAGGAGGAAGG 59.895 60.000 0.00 0.00 0.00 3.46
36 37 0.105039 CGTGGACATAGGAGGAAGGC 59.895 60.000 0.00 0.00 0.00 4.35
37 38 0.105039 GTGGACATAGGAGGAAGGCG 59.895 60.000 0.00 0.00 0.00 5.52
38 39 0.032515 TGGACATAGGAGGAAGGCGA 60.033 55.000 0.00 0.00 0.00 5.54
39 40 1.343069 GGACATAGGAGGAAGGCGAT 58.657 55.000 0.00 0.00 0.00 4.58
40 41 1.694696 GGACATAGGAGGAAGGCGATT 59.305 52.381 0.00 0.00 0.00 3.34
41 42 2.104963 GGACATAGGAGGAAGGCGATTT 59.895 50.000 0.00 0.00 0.00 2.17
42 43 3.394719 GACATAGGAGGAAGGCGATTTC 58.605 50.000 0.00 0.00 0.00 2.17
43 44 2.771943 ACATAGGAGGAAGGCGATTTCA 59.228 45.455 0.00 0.00 0.00 2.69
44 45 3.392616 ACATAGGAGGAAGGCGATTTCAT 59.607 43.478 0.00 0.00 0.00 2.57
45 46 2.629336 AGGAGGAAGGCGATTTCATC 57.371 50.000 5.70 5.70 37.20 2.92
46 47 1.839994 AGGAGGAAGGCGATTTCATCA 59.160 47.619 13.43 0.00 39.07 3.07
47 48 1.943340 GGAGGAAGGCGATTTCATCAC 59.057 52.381 13.43 3.10 39.07 3.06
48 49 2.420687 GGAGGAAGGCGATTTCATCACT 60.421 50.000 13.43 0.00 39.07 3.41
49 50 2.869192 GAGGAAGGCGATTTCATCACTC 59.131 50.000 8.49 0.00 37.70 3.51
50 51 2.237143 AGGAAGGCGATTTCATCACTCA 59.763 45.455 0.00 0.00 0.00 3.41
51 52 3.118112 AGGAAGGCGATTTCATCACTCAT 60.118 43.478 0.00 0.00 0.00 2.90
52 53 3.249559 GGAAGGCGATTTCATCACTCATC 59.750 47.826 0.00 0.00 0.00 2.92
53 54 3.548745 AGGCGATTTCATCACTCATCA 57.451 42.857 0.00 0.00 0.00 3.07
54 55 4.082665 AGGCGATTTCATCACTCATCAT 57.917 40.909 0.00 0.00 0.00 2.45
55 56 3.813724 AGGCGATTTCATCACTCATCATG 59.186 43.478 0.00 0.00 0.00 3.07
56 57 3.552541 GCGATTTCATCACTCATCATGC 58.447 45.455 0.00 0.00 0.00 4.06
57 58 3.250280 GCGATTTCATCACTCATCATGCT 59.750 43.478 0.00 0.00 0.00 3.79
58 59 4.261072 GCGATTTCATCACTCATCATGCTT 60.261 41.667 0.00 0.00 0.00 3.91
59 60 5.205565 CGATTTCATCACTCATCATGCTTG 58.794 41.667 0.00 0.00 0.00 4.01
60 61 5.220796 CGATTTCATCACTCATCATGCTTGT 60.221 40.000 0.00 0.00 0.00 3.16
61 62 5.970317 TTTCATCACTCATCATGCTTGTT 57.030 34.783 0.00 0.00 0.00 2.83
62 63 7.466320 CGATTTCATCACTCATCATGCTTGTTA 60.466 37.037 0.00 0.00 0.00 2.41
63 64 7.634671 TTTCATCACTCATCATGCTTGTTAT 57.365 32.000 0.00 0.00 0.00 1.89
64 65 7.634671 TTCATCACTCATCATGCTTGTTATT 57.365 32.000 0.00 0.00 0.00 1.40
65 66 7.634671 TCATCACTCATCATGCTTGTTATTT 57.365 32.000 0.00 0.00 0.00 1.40
66 67 7.477494 TCATCACTCATCATGCTTGTTATTTG 58.523 34.615 0.00 0.00 0.00 2.32
67 68 6.198650 TCACTCATCATGCTTGTTATTTGG 57.801 37.500 0.00 0.00 0.00 3.28
68 69 5.125900 TCACTCATCATGCTTGTTATTTGGG 59.874 40.000 0.00 0.00 0.00 4.12
69 70 5.125900 CACTCATCATGCTTGTTATTTGGGA 59.874 40.000 0.00 0.00 0.00 4.37
70 71 5.716228 ACTCATCATGCTTGTTATTTGGGAA 59.284 36.000 0.00 0.00 0.00 3.97
71 72 6.127535 ACTCATCATGCTTGTTATTTGGGAAG 60.128 38.462 0.00 0.00 0.00 3.46
72 73 5.716228 TCATCATGCTTGTTATTTGGGAAGT 59.284 36.000 0.00 0.00 0.00 3.01
73 74 5.389859 TCATGCTTGTTATTTGGGAAGTG 57.610 39.130 0.00 0.00 0.00 3.16
74 75 4.832266 TCATGCTTGTTATTTGGGAAGTGT 59.168 37.500 0.00 0.00 0.00 3.55
75 76 4.582701 TGCTTGTTATTTGGGAAGTGTG 57.417 40.909 0.00 0.00 0.00 3.82
76 77 3.320541 TGCTTGTTATTTGGGAAGTGTGG 59.679 43.478 0.00 0.00 0.00 4.17
77 78 3.572255 GCTTGTTATTTGGGAAGTGTGGA 59.428 43.478 0.00 0.00 0.00 4.02
78 79 4.038642 GCTTGTTATTTGGGAAGTGTGGAA 59.961 41.667 0.00 0.00 0.00 3.53
79 80 5.452636 GCTTGTTATTTGGGAAGTGTGGAAA 60.453 40.000 0.00 0.00 0.00 3.13
80 81 5.782893 TGTTATTTGGGAAGTGTGGAAAG 57.217 39.130 0.00 0.00 0.00 2.62
81 82 5.450453 TGTTATTTGGGAAGTGTGGAAAGA 58.550 37.500 0.00 0.00 0.00 2.52
82 83 5.534654 TGTTATTTGGGAAGTGTGGAAAGAG 59.465 40.000 0.00 0.00 0.00 2.85
83 84 3.943671 TTTGGGAAGTGTGGAAAGAGA 57.056 42.857 0.00 0.00 0.00 3.10
84 85 3.492102 TTGGGAAGTGTGGAAAGAGAG 57.508 47.619 0.00 0.00 0.00 3.20
85 86 2.689658 TGGGAAGTGTGGAAAGAGAGA 58.310 47.619 0.00 0.00 0.00 3.10
86 87 3.045634 TGGGAAGTGTGGAAAGAGAGAA 58.954 45.455 0.00 0.00 0.00 2.87
87 88 3.458118 TGGGAAGTGTGGAAAGAGAGAAA 59.542 43.478 0.00 0.00 0.00 2.52
88 89 3.815962 GGGAAGTGTGGAAAGAGAGAAAC 59.184 47.826 0.00 0.00 0.00 2.78
89 90 3.495001 GGAAGTGTGGAAAGAGAGAAACG 59.505 47.826 0.00 0.00 0.00 3.60
90 91 2.484889 AGTGTGGAAAGAGAGAAACGC 58.515 47.619 0.00 0.00 0.00 4.84
91 92 1.192534 GTGTGGAAAGAGAGAAACGCG 59.807 52.381 3.53 3.53 0.00 6.01
92 93 1.067974 TGTGGAAAGAGAGAAACGCGA 59.932 47.619 15.93 0.00 0.00 5.87
93 94 1.721926 GTGGAAAGAGAGAAACGCGAG 59.278 52.381 15.93 0.00 0.00 5.03
94 95 1.336887 TGGAAAGAGAGAAACGCGAGG 60.337 52.381 15.93 0.00 0.00 4.63
95 96 1.351153 GAAAGAGAGAAACGCGAGGG 58.649 55.000 15.93 0.00 0.00 4.30
96 97 0.680061 AAAGAGAGAAACGCGAGGGT 59.320 50.000 15.93 0.00 0.00 4.34
97 98 0.038159 AAGAGAGAAACGCGAGGGTG 60.038 55.000 15.93 0.00 0.00 4.61
98 99 1.179814 AGAGAGAAACGCGAGGGTGT 61.180 55.000 15.93 0.00 38.89 4.16
100 101 0.319641 AGAGAAACGCGAGGGTGTTC 60.320 55.000 15.93 6.22 45.67 3.18
101 102 1.289800 GAGAAACGCGAGGGTGTTCC 61.290 60.000 15.93 0.00 45.67 3.62
102 103 1.595929 GAAACGCGAGGGTGTTCCA 60.596 57.895 15.93 0.00 45.67 3.53
103 104 1.566018 GAAACGCGAGGGTGTTCCAG 61.566 60.000 15.93 0.00 45.67 3.86
104 105 4.681978 ACGCGAGGGTGTTCCAGC 62.682 66.667 15.93 0.00 38.24 4.85
105 106 4.680237 CGCGAGGGTGTTCCAGCA 62.680 66.667 0.00 0.00 40.06 4.41
106 107 2.045926 GCGAGGGTGTTCCAGCAT 60.046 61.111 0.00 0.00 39.91 3.79
107 108 2.401766 GCGAGGGTGTTCCAGCATG 61.402 63.158 0.00 0.00 39.91 4.06
108 109 1.003355 CGAGGGTGTTCCAGCATGT 60.003 57.895 0.00 0.00 38.24 3.21
109 110 0.249120 CGAGGGTGTTCCAGCATGTA 59.751 55.000 0.00 0.00 38.24 2.29
110 111 1.134401 CGAGGGTGTTCCAGCATGTAT 60.134 52.381 0.00 0.00 38.24 2.29
111 112 2.292267 GAGGGTGTTCCAGCATGTATG 58.708 52.381 0.00 0.00 38.24 2.39
112 113 1.635487 AGGGTGTTCCAGCATGTATGT 59.365 47.619 0.00 0.00 38.24 2.29
113 114 2.843730 AGGGTGTTCCAGCATGTATGTA 59.156 45.455 0.00 0.00 38.24 2.29
114 115 3.118261 AGGGTGTTCCAGCATGTATGTAG 60.118 47.826 0.00 0.00 38.24 2.74
115 116 3.206150 GGTGTTCCAGCATGTATGTAGG 58.794 50.000 0.00 0.00 0.00 3.18
116 117 3.370527 GGTGTTCCAGCATGTATGTAGGT 60.371 47.826 0.00 0.00 0.00 3.08
117 118 4.261801 GTGTTCCAGCATGTATGTAGGTT 58.738 43.478 0.00 0.00 0.00 3.50
118 119 4.094887 GTGTTCCAGCATGTATGTAGGTTG 59.905 45.833 0.00 0.00 0.00 3.77
119 120 2.917933 TCCAGCATGTATGTAGGTTGC 58.082 47.619 0.00 0.00 0.00 4.17
120 121 1.949525 CCAGCATGTATGTAGGTTGCC 59.050 52.381 0.00 0.00 33.85 4.52
121 122 2.642427 CAGCATGTATGTAGGTTGCCA 58.358 47.619 0.00 0.00 33.85 4.92
122 123 3.016031 CAGCATGTATGTAGGTTGCCAA 58.984 45.455 0.00 0.00 33.85 4.52
123 124 3.065786 CAGCATGTATGTAGGTTGCCAAG 59.934 47.826 0.00 0.00 33.85 3.61
124 125 2.223572 GCATGTATGTAGGTTGCCAAGC 60.224 50.000 0.00 0.00 0.00 4.01
125 126 1.732941 TGTATGTAGGTTGCCAAGCG 58.267 50.000 0.29 0.00 0.00 4.68
126 127 1.002659 TGTATGTAGGTTGCCAAGCGT 59.997 47.619 0.29 0.00 0.00 5.07
127 128 1.396996 GTATGTAGGTTGCCAAGCGTG 59.603 52.381 0.29 0.00 0.00 5.34
128 129 0.250727 ATGTAGGTTGCCAAGCGTGT 60.251 50.000 0.29 0.00 0.00 4.49
129 130 0.464735 TGTAGGTTGCCAAGCGTGTT 60.465 50.000 0.29 0.00 0.00 3.32
130 131 0.040425 GTAGGTTGCCAAGCGTGTTG 60.040 55.000 0.29 0.00 0.00 3.33
131 132 1.169661 TAGGTTGCCAAGCGTGTTGG 61.170 55.000 12.85 12.85 42.37 3.77
132 133 2.781158 GGTTGCCAAGCGTGTTGGT 61.781 57.895 16.96 0.00 41.53 3.67
133 134 1.299089 GTTGCCAAGCGTGTTGGTC 60.299 57.895 16.96 11.26 41.53 4.02
134 135 2.829206 TTGCCAAGCGTGTTGGTCG 61.829 57.895 16.96 0.00 41.53 4.79
135 136 2.970324 GCCAAGCGTGTTGGTCGA 60.970 61.111 16.96 0.00 41.53 4.20
136 137 2.954753 GCCAAGCGTGTTGGTCGAG 61.955 63.158 16.96 0.00 41.53 4.04
137 138 2.317609 CCAAGCGTGTTGGTCGAGG 61.318 63.158 9.80 0.00 34.92 4.63
138 139 2.665185 AAGCGTGTTGGTCGAGGC 60.665 61.111 0.00 0.00 0.00 4.70
139 140 3.165160 AAGCGTGTTGGTCGAGGCT 62.165 57.895 0.00 0.00 0.00 4.58
140 141 1.812686 AAGCGTGTTGGTCGAGGCTA 61.813 55.000 0.00 0.00 0.00 3.93
141 142 1.153628 GCGTGTTGGTCGAGGCTAT 60.154 57.895 0.00 0.00 0.00 2.97
142 143 0.739813 GCGTGTTGGTCGAGGCTATT 60.740 55.000 0.00 0.00 0.00 1.73
143 144 1.470285 GCGTGTTGGTCGAGGCTATTA 60.470 52.381 0.00 0.00 0.00 0.98
144 145 2.883574 CGTGTTGGTCGAGGCTATTAA 58.116 47.619 0.00 0.00 0.00 1.40
145 146 3.255725 CGTGTTGGTCGAGGCTATTAAA 58.744 45.455 0.00 0.00 0.00 1.52
146 147 3.306166 CGTGTTGGTCGAGGCTATTAAAG 59.694 47.826 0.00 0.00 0.00 1.85
155 156 3.284197 GCTATTAAAGCGGAGGCGA 57.716 52.632 0.00 0.00 46.35 5.54
156 157 1.140816 GCTATTAAAGCGGAGGCGAG 58.859 55.000 0.00 0.00 46.35 5.03
157 158 1.784525 CTATTAAAGCGGAGGCGAGG 58.215 55.000 0.00 0.00 46.35 4.63
158 159 0.249741 TATTAAAGCGGAGGCGAGGC 60.250 55.000 0.00 0.00 46.35 4.70
159 160 1.972660 ATTAAAGCGGAGGCGAGGCT 61.973 55.000 0.00 0.00 46.35 4.58
160 161 2.573609 TTAAAGCGGAGGCGAGGCTC 62.574 60.000 17.04 17.04 46.35 4.70
165 166 2.841988 GGAGGCGAGGCTCTGGAT 60.842 66.667 22.87 0.00 0.00 3.41
166 167 2.439104 GGAGGCGAGGCTCTGGATT 61.439 63.158 22.87 0.00 0.00 3.01
167 168 1.115930 GGAGGCGAGGCTCTGGATTA 61.116 60.000 22.87 0.00 0.00 1.75
168 169 0.972883 GAGGCGAGGCTCTGGATTAT 59.027 55.000 17.86 0.00 0.00 1.28
169 170 2.171840 GAGGCGAGGCTCTGGATTATA 58.828 52.381 17.86 0.00 0.00 0.98
170 171 2.763448 GAGGCGAGGCTCTGGATTATAT 59.237 50.000 17.86 0.00 0.00 0.86
171 172 2.763448 AGGCGAGGCTCTGGATTATATC 59.237 50.000 13.50 0.00 0.00 1.63
172 173 2.497675 GGCGAGGCTCTGGATTATATCA 59.502 50.000 13.50 0.00 0.00 2.15
173 174 3.430098 GGCGAGGCTCTGGATTATATCAG 60.430 52.174 13.50 0.00 0.00 2.90
174 175 3.430098 GCGAGGCTCTGGATTATATCAGG 60.430 52.174 13.50 0.00 0.00 3.86
175 176 3.131933 CGAGGCTCTGGATTATATCAGGG 59.868 52.174 13.50 0.00 34.75 4.45
176 177 3.454082 GAGGCTCTGGATTATATCAGGGG 59.546 52.174 7.40 0.00 32.40 4.79
177 178 2.092699 GGCTCTGGATTATATCAGGGGC 60.093 54.545 5.92 5.92 46.94 5.80
178 179 2.419297 GCTCTGGATTATATCAGGGGCG 60.419 54.545 0.00 0.00 32.40 6.13
179 180 3.099905 CTCTGGATTATATCAGGGGCGA 58.900 50.000 0.00 0.00 0.00 5.54
180 181 3.515502 CTCTGGATTATATCAGGGGCGAA 59.484 47.826 0.00 0.00 0.00 4.70
181 182 3.515502 TCTGGATTATATCAGGGGCGAAG 59.484 47.826 0.00 0.00 0.00 3.79
200 201 3.323751 AGCATTTGGGTTCTTTGATGC 57.676 42.857 0.00 0.00 39.97 3.91
201 202 2.027837 AGCATTTGGGTTCTTTGATGCC 60.028 45.455 0.00 0.00 40.41 4.40
202 203 2.609350 CATTTGGGTTCTTTGATGCCG 58.391 47.619 0.00 0.00 0.00 5.69
203 204 0.316841 TTTGGGTTCTTTGATGCCGC 59.683 50.000 0.00 0.00 0.00 6.53
204 205 1.861542 TTGGGTTCTTTGATGCCGCG 61.862 55.000 0.00 0.00 0.00 6.46
205 206 2.038269 GGGTTCTTTGATGCCGCGA 61.038 57.895 8.23 0.00 0.00 5.87
206 207 1.425428 GGTTCTTTGATGCCGCGAG 59.575 57.895 8.23 0.00 0.00 5.03
207 208 1.019278 GGTTCTTTGATGCCGCGAGA 61.019 55.000 8.23 0.00 0.00 4.04
208 209 0.371645 GTTCTTTGATGCCGCGAGAG 59.628 55.000 8.23 0.00 0.00 3.20
209 210 0.037326 TTCTTTGATGCCGCGAGAGT 60.037 50.000 8.23 0.00 0.00 3.24
210 211 0.815095 TCTTTGATGCCGCGAGAGTA 59.185 50.000 8.23 0.00 0.00 2.59
211 212 1.202302 TCTTTGATGCCGCGAGAGTAG 60.202 52.381 8.23 0.00 0.00 2.57
212 213 0.815095 TTTGATGCCGCGAGAGTAGA 59.185 50.000 8.23 0.00 0.00 2.59
213 214 0.815095 TTGATGCCGCGAGAGTAGAA 59.185 50.000 8.23 0.00 0.00 2.10
214 215 1.032794 TGATGCCGCGAGAGTAGAAT 58.967 50.000 8.23 0.00 0.00 2.40
215 216 1.409064 TGATGCCGCGAGAGTAGAATT 59.591 47.619 8.23 0.00 0.00 2.17
216 217 1.789464 GATGCCGCGAGAGTAGAATTG 59.211 52.381 8.23 0.00 0.00 2.32
217 218 0.530744 TGCCGCGAGAGTAGAATTGT 59.469 50.000 8.23 0.00 0.00 2.71
218 219 1.746787 TGCCGCGAGAGTAGAATTGTA 59.253 47.619 8.23 0.00 0.00 2.41
219 220 2.361119 TGCCGCGAGAGTAGAATTGTAT 59.639 45.455 8.23 0.00 0.00 2.29
220 221 3.181479 TGCCGCGAGAGTAGAATTGTATT 60.181 43.478 8.23 0.00 0.00 1.89
221 222 3.802685 GCCGCGAGAGTAGAATTGTATTT 59.197 43.478 8.23 0.00 0.00 1.40
222 223 4.270325 GCCGCGAGAGTAGAATTGTATTTT 59.730 41.667 8.23 0.00 0.00 1.82
223 224 5.461078 GCCGCGAGAGTAGAATTGTATTTTA 59.539 40.000 8.23 0.00 0.00 1.52
224 225 6.145696 GCCGCGAGAGTAGAATTGTATTTTAT 59.854 38.462 8.23 0.00 0.00 1.40
225 226 7.307219 GCCGCGAGAGTAGAATTGTATTTTATT 60.307 37.037 8.23 0.00 0.00 1.40
226 227 8.548721 CCGCGAGAGTAGAATTGTATTTTATTT 58.451 33.333 8.23 0.00 0.00 1.40
249 250 5.835113 ATATTTGTGTGAGGTGTAATGGC 57.165 39.130 0.00 0.00 0.00 4.40
250 251 1.904287 TTGTGTGAGGTGTAATGGCC 58.096 50.000 0.00 0.00 0.00 5.36
251 252 0.037590 TGTGTGAGGTGTAATGGCCC 59.962 55.000 0.00 0.00 0.00 5.80
252 253 0.328258 GTGTGAGGTGTAATGGCCCT 59.672 55.000 0.00 0.00 0.00 5.19
253 254 0.618458 TGTGAGGTGTAATGGCCCTC 59.382 55.000 0.00 0.00 44.16 4.30
254 255 0.912486 GTGAGGTGTAATGGCCCTCT 59.088 55.000 0.00 0.00 44.21 3.69
255 256 0.911769 TGAGGTGTAATGGCCCTCTG 59.088 55.000 0.00 0.00 44.21 3.35
256 257 0.464554 GAGGTGTAATGGCCCTCTGC 60.465 60.000 0.00 0.00 41.31 4.26
257 258 1.207488 AGGTGTAATGGCCCTCTGCA 61.207 55.000 0.00 0.00 43.89 4.41
258 259 0.749454 GGTGTAATGGCCCTCTGCAG 60.749 60.000 7.63 7.63 43.89 4.41
259 260 0.253044 GTGTAATGGCCCTCTGCAGA 59.747 55.000 17.19 17.19 43.89 4.26
260 261 0.253044 TGTAATGGCCCTCTGCAGAC 59.747 55.000 13.74 3.41 43.89 3.51
261 262 0.543749 GTAATGGCCCTCTGCAGACT 59.456 55.000 13.74 0.00 43.89 3.24
262 263 1.065126 GTAATGGCCCTCTGCAGACTT 60.065 52.381 13.74 0.00 43.89 3.01
263 264 0.407139 AATGGCCCTCTGCAGACTTT 59.593 50.000 13.74 4.89 43.89 2.66
264 265 0.323178 ATGGCCCTCTGCAGACTTTG 60.323 55.000 13.74 2.62 43.89 2.77
265 266 1.073897 GGCCCTCTGCAGACTTTGT 59.926 57.895 13.74 0.00 43.89 2.83
266 267 0.538287 GGCCCTCTGCAGACTTTGTT 60.538 55.000 13.74 0.00 43.89 2.83
267 268 1.271379 GGCCCTCTGCAGACTTTGTTA 60.271 52.381 13.74 0.00 43.89 2.41
268 269 2.619074 GGCCCTCTGCAGACTTTGTTAT 60.619 50.000 13.74 0.00 43.89 1.89
269 270 3.084786 GCCCTCTGCAGACTTTGTTATT 58.915 45.455 13.74 0.00 40.77 1.40
270 271 3.127721 GCCCTCTGCAGACTTTGTTATTC 59.872 47.826 13.74 0.00 40.77 1.75
271 272 3.691609 CCCTCTGCAGACTTTGTTATTCC 59.308 47.826 13.74 0.00 0.00 3.01
272 273 3.691609 CCTCTGCAGACTTTGTTATTCCC 59.308 47.826 13.74 0.00 0.00 3.97
273 274 3.686016 TCTGCAGACTTTGTTATTCCCC 58.314 45.455 13.74 0.00 0.00 4.81
274 275 3.330701 TCTGCAGACTTTGTTATTCCCCT 59.669 43.478 13.74 0.00 0.00 4.79
275 276 4.082125 CTGCAGACTTTGTTATTCCCCTT 58.918 43.478 8.42 0.00 0.00 3.95
276 277 4.079253 TGCAGACTTTGTTATTCCCCTTC 58.921 43.478 0.00 0.00 0.00 3.46
277 278 4.202567 TGCAGACTTTGTTATTCCCCTTCT 60.203 41.667 0.00 0.00 0.00 2.85
278 279 4.767409 GCAGACTTTGTTATTCCCCTTCTT 59.233 41.667 0.00 0.00 0.00 2.52
279 280 5.243954 GCAGACTTTGTTATTCCCCTTCTTT 59.756 40.000 0.00 0.00 0.00 2.52
280 281 6.239317 GCAGACTTTGTTATTCCCCTTCTTTT 60.239 38.462 0.00 0.00 0.00 2.27
281 282 7.686859 GCAGACTTTGTTATTCCCCTTCTTTTT 60.687 37.037 0.00 0.00 0.00 1.94
282 283 8.856103 CAGACTTTGTTATTCCCCTTCTTTTTA 58.144 33.333 0.00 0.00 0.00 1.52
283 284 9.429109 AGACTTTGTTATTCCCCTTCTTTTTAA 57.571 29.630 0.00 0.00 0.00 1.52
285 286 9.996554 ACTTTGTTATTCCCCTTCTTTTTAATG 57.003 29.630 0.00 0.00 0.00 1.90
288 289 9.594936 TTGTTATTCCCCTTCTTTTTAATGAGA 57.405 29.630 0.00 0.00 0.00 3.27
289 290 9.768215 TGTTATTCCCCTTCTTTTTAATGAGAT 57.232 29.630 0.00 0.00 0.00 2.75
291 292 9.989296 TTATTCCCCTTCTTTTTAATGAGATGA 57.011 29.630 4.17 0.00 0.00 2.92
292 293 7.944729 TTCCCCTTCTTTTTAATGAGATGAG 57.055 36.000 4.17 0.00 0.00 2.90
293 294 6.426587 TCCCCTTCTTTTTAATGAGATGAGG 58.573 40.000 4.17 0.00 0.00 3.86
294 295 5.068329 CCCCTTCTTTTTAATGAGATGAGGC 59.932 44.000 0.00 0.00 0.00 4.70
295 296 5.653769 CCCTTCTTTTTAATGAGATGAGGCA 59.346 40.000 0.00 0.00 0.00 4.75
296 297 6.153340 CCCTTCTTTTTAATGAGATGAGGCAA 59.847 38.462 0.00 0.00 0.00 4.52
297 298 7.309990 CCCTTCTTTTTAATGAGATGAGGCAAA 60.310 37.037 0.00 0.00 0.00 3.68
298 299 7.758528 CCTTCTTTTTAATGAGATGAGGCAAAG 59.241 37.037 0.00 0.00 0.00 2.77
299 300 6.624423 TCTTTTTAATGAGATGAGGCAAAGC 58.376 36.000 0.00 0.00 0.00 3.51
300 301 6.435277 TCTTTTTAATGAGATGAGGCAAAGCT 59.565 34.615 0.00 0.00 0.00 3.74
301 302 6.594788 TTTTAATGAGATGAGGCAAAGCTT 57.405 33.333 0.00 0.00 0.00 3.74
302 303 6.594788 TTTAATGAGATGAGGCAAAGCTTT 57.405 33.333 5.69 5.69 0.00 3.51
303 304 6.594788 TTAATGAGATGAGGCAAAGCTTTT 57.405 33.333 9.53 0.00 0.00 2.27
304 305 3.928727 TGAGATGAGGCAAAGCTTTTG 57.071 42.857 9.53 6.62 0.00 2.44
316 317 3.957383 GCTTTTGCCTCCGTTTCAA 57.043 47.368 0.00 0.00 40.15 2.69
317 318 2.217429 GCTTTTGCCTCCGTTTCAAA 57.783 45.000 0.00 0.00 40.15 2.69
318 319 2.545731 GCTTTTGCCTCCGTTTCAAAA 58.454 42.857 0.00 0.00 40.15 2.44
319 320 2.933260 GCTTTTGCCTCCGTTTCAAAAA 59.067 40.909 0.00 0.00 38.65 1.94
454 457 4.766891 ACAATTATGGACCTTGAGTTGTGG 59.233 41.667 0.00 0.00 0.00 4.17
494 497 2.290745 CCTCCCCCTTCCCCTAGG 59.709 72.222 0.06 0.06 34.92 3.02
495 498 2.448736 CTCCCCCTTCCCCTAGGC 60.449 72.222 2.05 0.00 33.73 3.93
511 518 0.621862 AGGCCCCCTTCTTCTCGATT 60.622 55.000 0.00 0.00 0.00 3.34
520 527 0.861866 TCTTCTCGATTTCTCGCGCG 60.862 55.000 26.76 26.76 44.65 6.86
528 535 1.017177 ATTTCTCGCGCGCCTGTTTA 61.017 50.000 27.95 4.63 0.00 2.01
558 568 4.082354 AGCTTACAAGTTACTACAGACCCG 60.082 45.833 0.00 0.00 0.00 5.28
696 710 5.861251 CGATTCCTTCTAGCTAGTTGCATAG 59.139 44.000 20.10 9.00 45.94 2.23
748 766 5.810095 TCATGGTACATACATGGAACACAA 58.190 37.500 9.75 0.00 42.03 3.33
930 948 5.220854 CGTTCCCAAAGTTCTATTGGCATAG 60.221 44.000 0.00 0.00 44.87 2.23
931 949 4.792068 TCCCAAAGTTCTATTGGCATAGG 58.208 43.478 0.00 0.00 44.87 2.57
932 950 4.476846 TCCCAAAGTTCTATTGGCATAGGA 59.523 41.667 0.00 0.00 44.87 2.94
933 951 5.134339 TCCCAAAGTTCTATTGGCATAGGAT 59.866 40.000 0.00 0.00 44.87 3.24
1083 1105 4.520743 TTGCTCTTTTCTAATCATCGCG 57.479 40.909 0.00 0.00 0.00 5.87
1191 1213 1.480683 CCGCCTCTCTACCCTAATGGA 60.481 57.143 0.00 0.00 38.00 3.41
1677 1699 2.971452 GAGGGCTTCTCCGTCGTT 59.029 61.111 0.00 0.00 39.63 3.85
1836 1858 1.938577 GACATGTCCTACGACGAGCTA 59.061 52.381 15.31 0.00 42.37 3.32
2121 2143 4.742201 CTGGTCGTGGTGGCCGAG 62.742 72.222 0.00 0.00 34.56 4.63
2696 2719 5.742063 TGATTCACTGCAGAGAATTGATCT 58.258 37.500 31.41 15.72 42.61 2.75
2775 2798 4.461198 GGAACCTTGGATCATTACGGATT 58.539 43.478 0.00 0.00 0.00 3.01
2866 2889 9.692749 TGATCTTTATACCGAGAACATGATAAC 57.307 33.333 0.00 0.00 0.00 1.89
2885 2908 8.634335 TGATAACATTTCATTTTGGAGACTGA 57.366 30.769 0.00 0.00 0.00 3.41
2911 2934 5.437060 AGTACAAATGCCGACCAAAGATAT 58.563 37.500 0.00 0.00 0.00 1.63
2912 2935 5.885912 AGTACAAATGCCGACCAAAGATATT 59.114 36.000 0.00 0.00 0.00 1.28
2913 2936 5.248870 ACAAATGCCGACCAAAGATATTC 57.751 39.130 0.00 0.00 0.00 1.75
2914 2937 4.201910 ACAAATGCCGACCAAAGATATTCG 60.202 41.667 0.00 0.00 0.00 3.34
2915 2938 2.971660 TGCCGACCAAAGATATTCGA 57.028 45.000 0.00 0.00 33.20 3.71
2930 2953 7.615582 AGATATTCGACAAATGAAGCTTTCA 57.384 32.000 0.00 0.27 45.01 2.69
2944 2967 7.581213 TGAAGCTTTCATCTAACTTTTCCAA 57.419 32.000 0.00 0.00 34.08 3.53
2982 3005 2.602257 TGGTAAGTGATCGATGCTGG 57.398 50.000 0.54 0.00 0.00 4.85
3035 3058 1.838112 TGGATGAATGTGGACCTTGC 58.162 50.000 0.00 0.00 0.00 4.01
3036 3059 1.355381 TGGATGAATGTGGACCTTGCT 59.645 47.619 0.00 0.00 0.00 3.91
3037 3060 2.225091 TGGATGAATGTGGACCTTGCTT 60.225 45.455 0.00 0.00 0.00 3.91
3038 3061 2.165030 GGATGAATGTGGACCTTGCTTG 59.835 50.000 0.00 0.00 0.00 4.01
3054 3077 3.801698 TGCTTGAATCTGAGAGCCATAC 58.198 45.455 0.00 0.00 34.30 2.39
3055 3078 3.137533 GCTTGAATCTGAGAGCCATACC 58.862 50.000 0.00 0.00 0.00 2.73
3141 3389 8.121708 GTCTTACTTGGAGTACTAGTAATCGTG 58.878 40.741 20.69 15.61 34.78 4.35
3152 3400 5.716094 ACTAGTAATCGTGTACATGCAACA 58.284 37.500 10.38 0.00 0.00 3.33
3159 3407 1.864711 GTGTACATGCAACACACGACT 59.135 47.619 21.13 0.00 45.26 4.18
3168 3420 2.605818 GCAACACACGACTAGTTTGACA 59.394 45.455 11.37 0.00 34.75 3.58
3206 3458 9.184523 TCCTAGATTAACCACAATTAATGTTGG 57.815 33.333 12.21 12.21 41.46 3.77
3247 3499 7.359097 GCTTTTGATGCAATTAATGTCGTTTCA 60.359 33.333 0.00 0.00 0.00 2.69
3324 3577 0.038251 ATTGAAGCAGCGTGAGACGA 60.038 50.000 0.00 0.00 46.05 4.20
3338 3591 4.677584 GTGAGACGATGGATATAGATGGC 58.322 47.826 0.00 0.00 0.00 4.40
3341 3594 4.348486 AGACGATGGATATAGATGGCTGT 58.652 43.478 0.00 0.00 0.00 4.40
3346 3599 7.063593 ACGATGGATATAGATGGCTGTATAGT 58.936 38.462 0.00 0.00 29.74 2.12
3349 3602 9.142014 GATGGATATAGATGGCTGTATAGTTCT 57.858 37.037 0.00 0.00 29.74 3.01
3363 3616 8.844244 GCTGTATAGTTCTGATCATTTGGATTT 58.156 33.333 0.00 0.00 36.00 2.17
3367 3620 6.683974 AGTTCTGATCATTTGGATTTACCG 57.316 37.500 0.00 0.00 42.61 4.02
3368 3621 5.590259 AGTTCTGATCATTTGGATTTACCGG 59.410 40.000 0.00 0.00 42.61 5.28
3397 3681 3.063997 GCATTGAGTGGTGTTTATCTCCG 59.936 47.826 0.00 0.00 32.86 4.63
3402 3686 3.671716 AGTGGTGTTTATCTCCGGTTTC 58.328 45.455 0.00 0.00 32.86 2.78
3403 3687 2.745821 GTGGTGTTTATCTCCGGTTTCC 59.254 50.000 0.00 0.00 32.86 3.13
3417 3701 2.817258 CGGTTTCCTTGCCTATTTCACA 59.183 45.455 0.00 0.00 0.00 3.58
3420 3704 4.321230 GGTTTCCTTGCCTATTTCACACAG 60.321 45.833 0.00 0.00 0.00 3.66
3455 3739 5.129815 ACATGTGTGGAAGGTACGGTTATAT 59.870 40.000 0.00 0.00 0.00 0.86
3457 3741 6.052405 TGTGTGGAAGGTACGGTTATATTT 57.948 37.500 0.00 0.00 0.00 1.40
3458 3742 6.474630 TGTGTGGAAGGTACGGTTATATTTT 58.525 36.000 0.00 0.00 0.00 1.82
3459 3743 6.941436 TGTGTGGAAGGTACGGTTATATTTTT 59.059 34.615 0.00 0.00 0.00 1.94
3460 3744 7.094720 TGTGTGGAAGGTACGGTTATATTTTTG 60.095 37.037 0.00 0.00 0.00 2.44
3461 3745 6.127952 TGTGGAAGGTACGGTTATATTTTTGC 60.128 38.462 0.00 0.00 0.00 3.68
3462 3746 5.944599 TGGAAGGTACGGTTATATTTTTGCA 59.055 36.000 0.00 0.00 0.00 4.08
3464 3748 6.970613 GGAAGGTACGGTTATATTTTTGCAAG 59.029 38.462 0.00 0.00 0.00 4.01
3467 3751 7.309920 AGGTACGGTTATATTTTTGCAAGTTG 58.690 34.615 0.00 0.00 0.00 3.16
3468 3752 7.175293 AGGTACGGTTATATTTTTGCAAGTTGA 59.825 33.333 7.16 0.00 0.00 3.18
3469 3753 7.271868 GGTACGGTTATATTTTTGCAAGTTGAC 59.728 37.037 7.16 0.00 0.00 3.18
3470 3754 6.153756 ACGGTTATATTTTTGCAAGTTGACC 58.846 36.000 7.16 0.00 0.00 4.02
3471 3755 5.285134 CGGTTATATTTTTGCAAGTTGACCG 59.715 40.000 7.16 17.06 39.06 4.79
3472 3756 5.061684 GGTTATATTTTTGCAAGTTGACCGC 59.938 40.000 7.16 0.00 0.00 5.68
3473 3757 2.888834 ATTTTTGCAAGTTGACCGCT 57.111 40.000 7.16 0.00 0.00 5.52
3474 3758 1.919918 TTTTTGCAAGTTGACCGCTG 58.080 45.000 7.16 0.00 0.00 5.18
3475 3759 1.098869 TTTTGCAAGTTGACCGCTGA 58.901 45.000 7.16 0.00 0.00 4.26
3481 3816 0.613260 AAGTTGACCGCTGAGGCATA 59.387 50.000 0.00 0.00 46.52 3.14
3489 3824 1.287730 CGCTGAGGCATAATCTCCGC 61.288 60.000 0.00 0.00 37.87 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.125106 GCCTAAGGACCACTGCCG 60.125 66.667 0.00 0.00 0.00 5.69
1 2 2.125106 CGCCTAAGGACCACTGCC 60.125 66.667 0.00 0.00 0.00 4.85
2 3 1.741770 CACGCCTAAGGACCACTGC 60.742 63.158 0.00 0.00 0.00 4.40
3 4 1.079127 CCACGCCTAAGGACCACTG 60.079 63.158 0.00 0.00 0.00 3.66
4 5 1.229082 TCCACGCCTAAGGACCACT 60.229 57.895 0.00 0.00 0.00 4.00
5 6 1.079336 GTCCACGCCTAAGGACCAC 60.079 63.158 0.00 0.00 46.79 4.16
6 7 3.384348 GTCCACGCCTAAGGACCA 58.616 61.111 0.00 0.00 46.79 4.02
9 10 1.063492 TCCTATGTCCACGCCTAAGGA 60.063 52.381 0.00 0.00 0.00 3.36
10 11 1.341531 CTCCTATGTCCACGCCTAAGG 59.658 57.143 0.00 0.00 0.00 2.69
11 12 1.341531 CCTCCTATGTCCACGCCTAAG 59.658 57.143 0.00 0.00 0.00 2.18
12 13 1.063492 TCCTCCTATGTCCACGCCTAA 60.063 52.381 0.00 0.00 0.00 2.69
13 14 0.554305 TCCTCCTATGTCCACGCCTA 59.446 55.000 0.00 0.00 0.00 3.93
14 15 0.325296 TTCCTCCTATGTCCACGCCT 60.325 55.000 0.00 0.00 0.00 5.52
15 16 0.105039 CTTCCTCCTATGTCCACGCC 59.895 60.000 0.00 0.00 0.00 5.68
16 17 0.105039 CCTTCCTCCTATGTCCACGC 59.895 60.000 0.00 0.00 0.00 5.34
17 18 0.105039 GCCTTCCTCCTATGTCCACG 59.895 60.000 0.00 0.00 0.00 4.94
18 19 0.105039 CGCCTTCCTCCTATGTCCAC 59.895 60.000 0.00 0.00 0.00 4.02
19 20 0.032515 TCGCCTTCCTCCTATGTCCA 60.033 55.000 0.00 0.00 0.00 4.02
20 21 1.343069 ATCGCCTTCCTCCTATGTCC 58.657 55.000 0.00 0.00 0.00 4.02
21 22 3.181465 TGAAATCGCCTTCCTCCTATGTC 60.181 47.826 0.00 0.00 0.00 3.06
22 23 2.771943 TGAAATCGCCTTCCTCCTATGT 59.228 45.455 0.00 0.00 0.00 2.29
23 24 3.475566 TGAAATCGCCTTCCTCCTATG 57.524 47.619 0.00 0.00 0.00 2.23
24 25 4.278975 GATGAAATCGCCTTCCTCCTAT 57.721 45.455 0.00 0.00 31.13 2.57
25 26 3.753294 GATGAAATCGCCTTCCTCCTA 57.247 47.619 0.00 0.00 31.13 2.94
26 27 2.629336 GATGAAATCGCCTTCCTCCT 57.371 50.000 0.00 0.00 31.13 3.69
37 38 6.132791 ACAAGCATGATGAGTGATGAAATC 57.867 37.500 0.00 0.00 45.83 2.17
38 39 6.525578 AACAAGCATGATGAGTGATGAAAT 57.474 33.333 0.00 0.00 0.00 2.17
39 40 5.970317 AACAAGCATGATGAGTGATGAAA 57.030 34.783 0.00 0.00 0.00 2.69
40 41 7.634671 AATAACAAGCATGATGAGTGATGAA 57.365 32.000 0.00 0.00 0.00 2.57
41 42 7.415877 CCAAATAACAAGCATGATGAGTGATGA 60.416 37.037 0.00 0.00 0.00 2.92
42 43 6.695713 CCAAATAACAAGCATGATGAGTGATG 59.304 38.462 0.00 0.00 0.00 3.07
43 44 6.183360 CCCAAATAACAAGCATGATGAGTGAT 60.183 38.462 0.00 0.00 0.00 3.06
44 45 5.125900 CCCAAATAACAAGCATGATGAGTGA 59.874 40.000 0.00 0.00 0.00 3.41
45 46 5.125900 TCCCAAATAACAAGCATGATGAGTG 59.874 40.000 0.00 0.00 0.00 3.51
46 47 5.263599 TCCCAAATAACAAGCATGATGAGT 58.736 37.500 0.00 0.00 0.00 3.41
47 48 5.840243 TCCCAAATAACAAGCATGATGAG 57.160 39.130 0.00 0.00 0.00 2.90
48 49 5.716228 ACTTCCCAAATAACAAGCATGATGA 59.284 36.000 0.00 0.00 0.00 2.92
49 50 5.808540 CACTTCCCAAATAACAAGCATGATG 59.191 40.000 0.00 0.00 0.00 3.07
50 51 5.481473 ACACTTCCCAAATAACAAGCATGAT 59.519 36.000 0.00 0.00 0.00 2.45
51 52 4.832266 ACACTTCCCAAATAACAAGCATGA 59.168 37.500 0.00 0.00 0.00 3.07
52 53 4.925054 CACACTTCCCAAATAACAAGCATG 59.075 41.667 0.00 0.00 0.00 4.06
53 54 4.021192 CCACACTTCCCAAATAACAAGCAT 60.021 41.667 0.00 0.00 0.00 3.79
54 55 3.320541 CCACACTTCCCAAATAACAAGCA 59.679 43.478 0.00 0.00 0.00 3.91
55 56 3.572255 TCCACACTTCCCAAATAACAAGC 59.428 43.478 0.00 0.00 0.00 4.01
56 57 5.782893 TTCCACACTTCCCAAATAACAAG 57.217 39.130 0.00 0.00 0.00 3.16
57 58 5.894393 TCTTTCCACACTTCCCAAATAACAA 59.106 36.000 0.00 0.00 0.00 2.83
58 59 5.450453 TCTTTCCACACTTCCCAAATAACA 58.550 37.500 0.00 0.00 0.00 2.41
59 60 5.768164 TCTCTTTCCACACTTCCCAAATAAC 59.232 40.000 0.00 0.00 0.00 1.89
60 61 5.947663 TCTCTTTCCACACTTCCCAAATAA 58.052 37.500 0.00 0.00 0.00 1.40
61 62 5.309543 TCTCTCTTTCCACACTTCCCAAATA 59.690 40.000 0.00 0.00 0.00 1.40
62 63 4.104738 TCTCTCTTTCCACACTTCCCAAAT 59.895 41.667 0.00 0.00 0.00 2.32
63 64 3.458118 TCTCTCTTTCCACACTTCCCAAA 59.542 43.478 0.00 0.00 0.00 3.28
64 65 3.045634 TCTCTCTTTCCACACTTCCCAA 58.954 45.455 0.00 0.00 0.00 4.12
65 66 2.689658 TCTCTCTTTCCACACTTCCCA 58.310 47.619 0.00 0.00 0.00 4.37
66 67 3.771577 TTCTCTCTTTCCACACTTCCC 57.228 47.619 0.00 0.00 0.00 3.97
67 68 3.495001 CGTTTCTCTCTTTCCACACTTCC 59.505 47.826 0.00 0.00 0.00 3.46
68 69 3.059529 GCGTTTCTCTCTTTCCACACTTC 60.060 47.826 0.00 0.00 0.00 3.01
69 70 2.872858 GCGTTTCTCTCTTTCCACACTT 59.127 45.455 0.00 0.00 0.00 3.16
70 71 2.484889 GCGTTTCTCTCTTTCCACACT 58.515 47.619 0.00 0.00 0.00 3.55
71 72 1.192534 CGCGTTTCTCTCTTTCCACAC 59.807 52.381 0.00 0.00 0.00 3.82
72 73 1.067974 TCGCGTTTCTCTCTTTCCACA 59.932 47.619 5.77 0.00 0.00 4.17
73 74 1.721926 CTCGCGTTTCTCTCTTTCCAC 59.278 52.381 5.77 0.00 0.00 4.02
74 75 1.336887 CCTCGCGTTTCTCTCTTTCCA 60.337 52.381 5.77 0.00 0.00 3.53
75 76 1.351153 CCTCGCGTTTCTCTCTTTCC 58.649 55.000 5.77 0.00 0.00 3.13
76 77 1.336980 ACCCTCGCGTTTCTCTCTTTC 60.337 52.381 5.77 0.00 0.00 2.62
77 78 0.680061 ACCCTCGCGTTTCTCTCTTT 59.320 50.000 5.77 0.00 0.00 2.52
78 79 0.038159 CACCCTCGCGTTTCTCTCTT 60.038 55.000 5.77 0.00 0.00 2.85
79 80 1.179814 ACACCCTCGCGTTTCTCTCT 61.180 55.000 5.77 0.00 0.00 3.10
80 81 0.319641 AACACCCTCGCGTTTCTCTC 60.320 55.000 5.77 0.00 0.00 3.20
81 82 0.319641 GAACACCCTCGCGTTTCTCT 60.320 55.000 5.77 0.00 0.00 3.10
82 83 1.289800 GGAACACCCTCGCGTTTCTC 61.290 60.000 5.77 0.00 0.00 2.87
83 84 1.301479 GGAACACCCTCGCGTTTCT 60.301 57.895 5.77 0.00 0.00 2.52
84 85 1.566018 CTGGAACACCCTCGCGTTTC 61.566 60.000 5.77 0.66 35.38 2.78
85 86 1.597027 CTGGAACACCCTCGCGTTT 60.597 57.895 5.77 0.00 35.38 3.60
86 87 2.030562 CTGGAACACCCTCGCGTT 59.969 61.111 5.77 0.00 35.38 4.84
87 88 4.681978 GCTGGAACACCCTCGCGT 62.682 66.667 5.77 0.00 35.38 6.01
88 89 3.958147 ATGCTGGAACACCCTCGCG 62.958 63.158 0.00 0.00 35.67 5.87
89 90 2.045926 ATGCTGGAACACCCTCGC 60.046 61.111 0.00 0.00 35.38 5.03
90 91 0.249120 TACATGCTGGAACACCCTCG 59.751 55.000 0.00 0.00 35.38 4.63
91 92 2.292267 CATACATGCTGGAACACCCTC 58.708 52.381 0.00 0.00 35.38 4.30
92 93 1.635487 ACATACATGCTGGAACACCCT 59.365 47.619 0.00 0.00 35.38 4.34
93 94 2.128771 ACATACATGCTGGAACACCC 57.871 50.000 0.00 0.00 0.00 4.61
94 95 3.206150 CCTACATACATGCTGGAACACC 58.794 50.000 0.00 0.00 0.00 4.16
95 96 3.873910 ACCTACATACATGCTGGAACAC 58.126 45.455 0.00 0.00 0.00 3.32
96 97 4.260985 CAACCTACATACATGCTGGAACA 58.739 43.478 0.00 0.00 0.00 3.18
97 98 3.065371 GCAACCTACATACATGCTGGAAC 59.935 47.826 0.00 0.00 34.29 3.62
98 99 3.278574 GCAACCTACATACATGCTGGAA 58.721 45.455 0.00 0.00 34.29 3.53
99 100 2.421388 GGCAACCTACATACATGCTGGA 60.421 50.000 0.00 0.00 37.20 3.86
100 101 1.949525 GGCAACCTACATACATGCTGG 59.050 52.381 0.00 0.00 37.20 4.85
101 102 2.642427 TGGCAACCTACATACATGCTG 58.358 47.619 0.00 0.00 37.20 4.41
102 103 3.282021 CTTGGCAACCTACATACATGCT 58.718 45.455 0.00 0.00 37.20 3.79
103 104 2.223572 GCTTGGCAACCTACATACATGC 60.224 50.000 0.00 0.00 36.31 4.06
104 105 2.032054 CGCTTGGCAACCTACATACATG 59.968 50.000 0.00 0.00 0.00 3.21
105 106 2.288666 CGCTTGGCAACCTACATACAT 58.711 47.619 0.00 0.00 0.00 2.29
106 107 1.002659 ACGCTTGGCAACCTACATACA 59.997 47.619 0.00 0.00 0.00 2.29
107 108 1.396996 CACGCTTGGCAACCTACATAC 59.603 52.381 0.00 0.00 0.00 2.39
108 109 1.002659 ACACGCTTGGCAACCTACATA 59.997 47.619 0.00 0.00 0.00 2.29
109 110 0.250727 ACACGCTTGGCAACCTACAT 60.251 50.000 0.00 0.00 0.00 2.29
110 111 0.464735 AACACGCTTGGCAACCTACA 60.465 50.000 0.00 0.00 0.00 2.74
111 112 0.040425 CAACACGCTTGGCAACCTAC 60.040 55.000 0.00 0.00 0.00 3.18
112 113 1.169661 CCAACACGCTTGGCAACCTA 61.170 55.000 0.00 0.00 32.18 3.08
113 114 2.489275 CCAACACGCTTGGCAACCT 61.489 57.895 0.00 0.00 32.18 3.50
114 115 2.027460 CCAACACGCTTGGCAACC 59.973 61.111 0.00 0.00 32.18 3.77
115 116 1.299089 GACCAACACGCTTGGCAAC 60.299 57.895 11.52 0.00 43.23 4.17
116 117 2.829206 CGACCAACACGCTTGGCAA 61.829 57.895 11.52 0.00 43.23 4.52
117 118 3.276091 CGACCAACACGCTTGGCA 61.276 61.111 11.52 0.00 43.23 4.92
118 119 2.954753 CTCGACCAACACGCTTGGC 61.955 63.158 11.52 5.07 43.23 4.52
119 120 2.317609 CCTCGACCAACACGCTTGG 61.318 63.158 10.28 10.28 44.91 3.61
120 121 2.954753 GCCTCGACCAACACGCTTG 61.955 63.158 0.00 0.00 0.00 4.01
121 122 1.812686 TAGCCTCGACCAACACGCTT 61.813 55.000 0.00 0.00 0.00 4.68
122 123 1.605058 ATAGCCTCGACCAACACGCT 61.605 55.000 0.00 0.00 0.00 5.07
123 124 0.739813 AATAGCCTCGACCAACACGC 60.740 55.000 0.00 0.00 0.00 5.34
124 125 2.572191 TAATAGCCTCGACCAACACG 57.428 50.000 0.00 0.00 0.00 4.49
125 126 3.063588 GCTTTAATAGCCTCGACCAACAC 59.936 47.826 0.00 0.00 44.48 3.32
126 127 3.267483 GCTTTAATAGCCTCGACCAACA 58.733 45.455 0.00 0.00 44.48 3.33
127 128 3.946308 GCTTTAATAGCCTCGACCAAC 57.054 47.619 0.00 0.00 44.48 3.77
137 138 1.140816 CTCGCCTCCGCTTTAATAGC 58.859 55.000 0.00 0.00 46.83 2.97
138 139 1.784525 CCTCGCCTCCGCTTTAATAG 58.215 55.000 0.00 0.00 0.00 1.73
139 140 0.249741 GCCTCGCCTCCGCTTTAATA 60.250 55.000 0.00 0.00 0.00 0.98
140 141 1.523938 GCCTCGCCTCCGCTTTAAT 60.524 57.895 0.00 0.00 0.00 1.40
141 142 2.125269 GCCTCGCCTCCGCTTTAA 60.125 61.111 0.00 0.00 0.00 1.52
142 143 3.075005 AGCCTCGCCTCCGCTTTA 61.075 61.111 0.00 0.00 0.00 1.85
143 144 4.459089 GAGCCTCGCCTCCGCTTT 62.459 66.667 0.00 0.00 31.61 3.51
148 149 1.115930 TAATCCAGAGCCTCGCCTCC 61.116 60.000 0.00 0.00 32.17 4.30
149 150 0.972883 ATAATCCAGAGCCTCGCCTC 59.027 55.000 0.00 0.00 0.00 4.70
150 151 2.310779 TATAATCCAGAGCCTCGCCT 57.689 50.000 0.00 0.00 0.00 5.52
151 152 2.497675 TGATATAATCCAGAGCCTCGCC 59.502 50.000 0.00 0.00 0.00 5.54
152 153 3.430098 CCTGATATAATCCAGAGCCTCGC 60.430 52.174 0.00 0.00 32.37 5.03
153 154 3.131933 CCCTGATATAATCCAGAGCCTCG 59.868 52.174 0.00 0.00 32.37 4.63
154 155 3.454082 CCCCTGATATAATCCAGAGCCTC 59.546 52.174 0.00 0.00 32.37 4.70
155 156 3.458831 CCCCTGATATAATCCAGAGCCT 58.541 50.000 0.00 0.00 32.37 4.58
156 157 2.092699 GCCCCTGATATAATCCAGAGCC 60.093 54.545 0.00 0.00 32.37 4.70
157 158 2.419297 CGCCCCTGATATAATCCAGAGC 60.419 54.545 0.00 0.00 32.37 4.09
158 159 3.099905 TCGCCCCTGATATAATCCAGAG 58.900 50.000 0.00 0.00 32.37 3.35
159 160 3.184382 TCGCCCCTGATATAATCCAGA 57.816 47.619 0.00 0.00 32.37 3.86
160 161 3.866651 CTTCGCCCCTGATATAATCCAG 58.133 50.000 0.00 0.00 0.00 3.86
161 162 2.027192 GCTTCGCCCCTGATATAATCCA 60.027 50.000 0.00 0.00 0.00 3.41
162 163 2.027192 TGCTTCGCCCCTGATATAATCC 60.027 50.000 0.00 0.00 0.00 3.01
163 164 3.334583 TGCTTCGCCCCTGATATAATC 57.665 47.619 0.00 0.00 0.00 1.75
164 165 4.307032 AATGCTTCGCCCCTGATATAAT 57.693 40.909 0.00 0.00 0.00 1.28
165 166 3.788227 AATGCTTCGCCCCTGATATAA 57.212 42.857 0.00 0.00 0.00 0.98
166 167 3.411446 CAAATGCTTCGCCCCTGATATA 58.589 45.455 0.00 0.00 0.00 0.86
167 168 2.233271 CAAATGCTTCGCCCCTGATAT 58.767 47.619 0.00 0.00 0.00 1.63
168 169 1.679139 CAAATGCTTCGCCCCTGATA 58.321 50.000 0.00 0.00 0.00 2.15
169 170 1.039233 CCAAATGCTTCGCCCCTGAT 61.039 55.000 0.00 0.00 0.00 2.90
170 171 1.678635 CCAAATGCTTCGCCCCTGA 60.679 57.895 0.00 0.00 0.00 3.86
171 172 2.713967 CCCAAATGCTTCGCCCCTG 61.714 63.158 0.00 0.00 0.00 4.45
172 173 2.362889 CCCAAATGCTTCGCCCCT 60.363 61.111 0.00 0.00 0.00 4.79
173 174 2.225791 GAACCCAAATGCTTCGCCCC 62.226 60.000 0.00 0.00 0.00 5.80
174 175 1.215382 GAACCCAAATGCTTCGCCC 59.785 57.895 0.00 0.00 0.00 6.13
175 176 0.603065 AAGAACCCAAATGCTTCGCC 59.397 50.000 0.00 0.00 0.00 5.54
176 177 2.061028 CAAAGAACCCAAATGCTTCGC 58.939 47.619 0.00 0.00 0.00 4.70
177 178 3.641437 TCAAAGAACCCAAATGCTTCG 57.359 42.857 0.00 0.00 0.00 3.79
178 179 3.681417 GCATCAAAGAACCCAAATGCTTC 59.319 43.478 0.00 0.00 37.21 3.86
179 180 3.557686 GGCATCAAAGAACCCAAATGCTT 60.558 43.478 5.27 0.00 39.47 3.91
180 181 2.027837 GGCATCAAAGAACCCAAATGCT 60.028 45.455 5.27 0.00 39.47 3.79
181 182 2.349590 GGCATCAAAGAACCCAAATGC 58.650 47.619 0.00 0.00 38.95 3.56
182 183 2.609350 CGGCATCAAAGAACCCAAATG 58.391 47.619 0.00 0.00 0.00 2.32
183 184 1.066929 GCGGCATCAAAGAACCCAAAT 60.067 47.619 0.00 0.00 0.00 2.32
184 185 0.316841 GCGGCATCAAAGAACCCAAA 59.683 50.000 0.00 0.00 0.00 3.28
185 186 1.861542 CGCGGCATCAAAGAACCCAA 61.862 55.000 0.00 0.00 0.00 4.12
186 187 2.331893 CGCGGCATCAAAGAACCCA 61.332 57.895 0.00 0.00 0.00 4.51
187 188 1.982073 CTCGCGGCATCAAAGAACCC 61.982 60.000 6.13 0.00 0.00 4.11
188 189 1.019278 TCTCGCGGCATCAAAGAACC 61.019 55.000 6.13 0.00 0.00 3.62
189 190 0.371645 CTCTCGCGGCATCAAAGAAC 59.628 55.000 6.13 0.00 0.00 3.01
190 191 0.037326 ACTCTCGCGGCATCAAAGAA 60.037 50.000 6.13 0.00 0.00 2.52
191 192 0.815095 TACTCTCGCGGCATCAAAGA 59.185 50.000 6.13 0.00 0.00 2.52
192 193 1.202302 TCTACTCTCGCGGCATCAAAG 60.202 52.381 6.13 0.00 0.00 2.77
193 194 0.815095 TCTACTCTCGCGGCATCAAA 59.185 50.000 6.13 0.00 0.00 2.69
194 195 0.815095 TTCTACTCTCGCGGCATCAA 59.185 50.000 6.13 0.00 0.00 2.57
195 196 1.032794 ATTCTACTCTCGCGGCATCA 58.967 50.000 6.13 0.00 0.00 3.07
196 197 1.789464 CAATTCTACTCTCGCGGCATC 59.211 52.381 6.13 0.00 0.00 3.91
197 198 1.137086 ACAATTCTACTCTCGCGGCAT 59.863 47.619 6.13 0.00 0.00 4.40
198 199 0.530744 ACAATTCTACTCTCGCGGCA 59.469 50.000 6.13 0.00 0.00 5.69
199 200 2.486951 TACAATTCTACTCTCGCGGC 57.513 50.000 6.13 0.00 0.00 6.53
200 201 5.968387 AAAATACAATTCTACTCTCGCGG 57.032 39.130 6.13 0.00 0.00 6.46
223 224 8.413229 GCCATTACACCTCACACAAATATAAAT 58.587 33.333 0.00 0.00 0.00 1.40
224 225 7.147983 GGCCATTACACCTCACACAAATATAAA 60.148 37.037 0.00 0.00 0.00 1.40
225 226 6.320164 GGCCATTACACCTCACACAAATATAA 59.680 38.462 0.00 0.00 0.00 0.98
226 227 5.825679 GGCCATTACACCTCACACAAATATA 59.174 40.000 0.00 0.00 0.00 0.86
227 228 4.644685 GGCCATTACACCTCACACAAATAT 59.355 41.667 0.00 0.00 0.00 1.28
228 229 4.013728 GGCCATTACACCTCACACAAATA 58.986 43.478 0.00 0.00 0.00 1.40
229 230 2.825532 GGCCATTACACCTCACACAAAT 59.174 45.455 0.00 0.00 0.00 2.32
230 231 2.235016 GGCCATTACACCTCACACAAA 58.765 47.619 0.00 0.00 0.00 2.83
231 232 1.546773 GGGCCATTACACCTCACACAA 60.547 52.381 4.39 0.00 0.00 3.33
232 233 0.037590 GGGCCATTACACCTCACACA 59.962 55.000 4.39 0.00 0.00 3.72
233 234 0.328258 AGGGCCATTACACCTCACAC 59.672 55.000 6.18 0.00 0.00 3.82
234 235 2.785743 AGGGCCATTACACCTCACA 58.214 52.632 6.18 0.00 0.00 3.58
238 239 1.207488 TGCAGAGGGCCATTACACCT 61.207 55.000 6.18 0.00 43.89 4.00
239 240 0.749454 CTGCAGAGGGCCATTACACC 60.749 60.000 8.42 0.00 43.89 4.16
240 241 0.253044 TCTGCAGAGGGCCATTACAC 59.747 55.000 13.74 0.00 43.89 2.90
241 242 0.253044 GTCTGCAGAGGGCCATTACA 59.747 55.000 18.89 0.00 43.89 2.41
242 243 0.543749 AGTCTGCAGAGGGCCATTAC 59.456 55.000 18.89 2.07 43.89 1.89
243 244 1.289160 AAGTCTGCAGAGGGCCATTA 58.711 50.000 18.89 0.00 43.89 1.90
244 245 0.407139 AAAGTCTGCAGAGGGCCATT 59.593 50.000 18.89 1.35 43.89 3.16
245 246 0.323178 CAAAGTCTGCAGAGGGCCAT 60.323 55.000 18.89 0.00 43.89 4.40
246 247 1.073722 CAAAGTCTGCAGAGGGCCA 59.926 57.895 18.89 0.00 43.89 5.36
247 248 0.538287 AACAAAGTCTGCAGAGGGCC 60.538 55.000 18.89 5.16 43.89 5.80
248 249 2.185004 TAACAAAGTCTGCAGAGGGC 57.815 50.000 18.89 5.58 45.13 5.19
249 250 3.691609 GGAATAACAAAGTCTGCAGAGGG 59.308 47.826 18.89 9.39 0.00 4.30
250 251 3.691609 GGGAATAACAAAGTCTGCAGAGG 59.308 47.826 18.89 9.77 0.00 3.69
251 252 3.691609 GGGGAATAACAAAGTCTGCAGAG 59.308 47.826 18.89 8.00 0.00 3.35
252 253 3.330701 AGGGGAATAACAAAGTCTGCAGA 59.669 43.478 13.74 13.74 0.00 4.26
253 254 3.690460 AGGGGAATAACAAAGTCTGCAG 58.310 45.455 7.63 7.63 0.00 4.41
254 255 3.806949 AGGGGAATAACAAAGTCTGCA 57.193 42.857 0.00 0.00 0.00 4.41
255 256 4.336280 AGAAGGGGAATAACAAAGTCTGC 58.664 43.478 0.00 0.00 0.00 4.26
256 257 6.901081 AAAGAAGGGGAATAACAAAGTCTG 57.099 37.500 0.00 0.00 0.00 3.51
257 258 7.914427 AAAAAGAAGGGGAATAACAAAGTCT 57.086 32.000 0.00 0.00 0.00 3.24
259 260 9.996554 CATTAAAAAGAAGGGGAATAACAAAGT 57.003 29.630 0.00 0.00 0.00 2.66
262 263 9.594936 TCTCATTAAAAAGAAGGGGAATAACAA 57.405 29.630 0.00 0.00 0.00 2.83
263 264 9.768215 ATCTCATTAAAAAGAAGGGGAATAACA 57.232 29.630 0.00 0.00 0.00 2.41
265 266 9.989296 TCATCTCATTAAAAAGAAGGGGAATAA 57.011 29.630 0.00 0.00 0.00 1.40
266 267 9.632638 CTCATCTCATTAAAAAGAAGGGGAATA 57.367 33.333 0.00 0.00 0.00 1.75
267 268 7.562821 CCTCATCTCATTAAAAAGAAGGGGAAT 59.437 37.037 5.95 0.00 33.57 3.01
268 269 6.891908 CCTCATCTCATTAAAAAGAAGGGGAA 59.108 38.462 5.95 0.00 33.57 3.97
269 270 6.426587 CCTCATCTCATTAAAAAGAAGGGGA 58.573 40.000 5.95 0.00 33.57 4.81
270 271 5.068329 GCCTCATCTCATTAAAAAGAAGGGG 59.932 44.000 7.07 7.07 34.63 4.79
271 272 5.653769 TGCCTCATCTCATTAAAAAGAAGGG 59.346 40.000 8.92 6.45 0.00 3.95
272 273 6.764308 TGCCTCATCTCATTAAAAAGAAGG 57.236 37.500 4.78 4.78 0.00 3.46
273 274 7.275123 GCTTTGCCTCATCTCATTAAAAAGAAG 59.725 37.037 0.00 0.00 0.00 2.85
274 275 7.039504 AGCTTTGCCTCATCTCATTAAAAAGAA 60.040 33.333 0.00 0.00 0.00 2.52
275 276 6.435277 AGCTTTGCCTCATCTCATTAAAAAGA 59.565 34.615 0.00 0.00 0.00 2.52
276 277 6.628185 AGCTTTGCCTCATCTCATTAAAAAG 58.372 36.000 0.00 0.00 0.00 2.27
277 278 6.594788 AGCTTTGCCTCATCTCATTAAAAA 57.405 33.333 0.00 0.00 0.00 1.94
278 279 6.594788 AAGCTTTGCCTCATCTCATTAAAA 57.405 33.333 0.00 0.00 0.00 1.52
279 280 6.594788 AAAGCTTTGCCTCATCTCATTAAA 57.405 33.333 11.80 0.00 0.00 1.52
280 281 6.392354 CAAAAGCTTTGCCTCATCTCATTAA 58.608 36.000 13.54 0.00 0.00 1.40
281 282 5.622914 GCAAAAGCTTTGCCTCATCTCATTA 60.623 40.000 13.54 0.00 39.38 1.90
282 283 4.817517 CAAAAGCTTTGCCTCATCTCATT 58.182 39.130 13.54 0.00 0.00 2.57
283 284 3.368116 GCAAAAGCTTTGCCTCATCTCAT 60.368 43.478 13.54 0.00 39.38 2.90
284 285 2.029649 GCAAAAGCTTTGCCTCATCTCA 60.030 45.455 13.54 0.00 39.38 3.27
285 286 2.603953 GCAAAAGCTTTGCCTCATCTC 58.396 47.619 13.54 0.00 39.38 2.75
286 287 2.738013 GCAAAAGCTTTGCCTCATCT 57.262 45.000 13.54 0.00 39.38 2.90
293 294 0.249447 AACGGAGGCAAAAGCTTTGC 60.249 50.000 13.54 17.13 44.22 3.68
294 295 2.127251 GAAACGGAGGCAAAAGCTTTG 58.873 47.619 13.54 8.26 0.00 2.77
295 296 1.754226 TGAAACGGAGGCAAAAGCTTT 59.246 42.857 5.69 5.69 0.00 3.51
296 297 1.398692 TGAAACGGAGGCAAAAGCTT 58.601 45.000 0.00 0.00 0.00 3.74
297 298 1.398692 TTGAAACGGAGGCAAAAGCT 58.601 45.000 0.00 0.00 0.00 3.74
298 299 2.217429 TTTGAAACGGAGGCAAAAGC 57.783 45.000 0.00 0.00 0.00 3.51
325 326 9.528489 AGGATAACACCATGTTACAATAGTTTT 57.472 29.630 3.62 0.00 44.54 2.43
454 457 0.327259 AAGGAGGAAGGTTTACCGGC 59.673 55.000 0.00 0.00 42.08 6.13
494 497 1.210722 AGAAATCGAGAAGAAGGGGGC 59.789 52.381 0.00 0.00 0.00 5.80
495 498 2.482142 CGAGAAATCGAGAAGAAGGGGG 60.482 54.545 0.00 0.00 34.64 5.40
511 518 1.418342 GATAAACAGGCGCGCGAGAA 61.418 55.000 37.18 11.01 0.00 2.87
520 527 2.426842 AAGCTGGAGGATAAACAGGC 57.573 50.000 0.00 0.00 32.98 4.85
528 535 5.720041 TGTAGTAACTTGTAAGCTGGAGGAT 59.280 40.000 0.00 0.00 0.00 3.24
576 586 7.336931 GGTATTTGAATCCAAGAGTGAAAGCTA 59.663 37.037 0.00 0.00 33.23 3.32
615 625 3.502211 TGCTTGATATCGATCGACTAGCA 59.498 43.478 26.88 26.88 34.89 3.49
696 710 6.072175 AGGATCGAGATCTAACAGCACTATTC 60.072 42.308 12.22 0.00 37.92 1.75
748 766 6.702449 AGAAAGGGCAGGGAAATTAAAATT 57.298 33.333 0.00 0.00 0.00 1.82
930 948 2.159085 AGCTACACGTGCTTTCCTATCC 60.159 50.000 17.22 0.00 37.52 2.59
931 949 2.860735 CAGCTACACGTGCTTTCCTATC 59.139 50.000 17.22 0.00 38.92 2.08
932 950 2.233922 ACAGCTACACGTGCTTTCCTAT 59.766 45.455 17.22 0.00 38.92 2.57
933 951 1.616865 ACAGCTACACGTGCTTTCCTA 59.383 47.619 17.22 0.00 38.92 2.94
1083 1105 0.939106 AACAAATTTGCGACGCTGCC 60.939 50.000 22.08 0.00 0.00 4.85
1132 1154 2.292267 GGTGAACTGCATCATGTAGGG 58.708 52.381 7.73 0.00 34.23 3.53
1191 1213 3.612115 TAGCCCTAGCCCGTGGTGT 62.612 63.158 0.00 0.00 41.25 4.16
1293 1315 1.203622 AGGTTCCCCAGGGAGATCTTT 60.204 52.381 7.25 0.00 46.06 2.52
1398 1420 0.254462 TGTTGTTGAGCACCCACAGA 59.746 50.000 0.00 0.00 0.00 3.41
1401 1423 0.238289 CGATGTTGTTGAGCACCCAC 59.762 55.000 0.00 0.00 0.00 4.61
1677 1699 2.962827 GCTGAGGTCGACGACGTGA 61.963 63.158 26.17 17.74 40.69 4.35
1836 1858 2.280797 TTGACAAGCTTCGCGCCT 60.281 55.556 0.00 0.00 40.39 5.52
2121 2143 1.519455 CGTGAAGTCGGCATCCTCC 60.519 63.158 0.00 0.00 0.00 4.30
2717 2740 5.055642 TCTACGGTGTATTTGTGAGAGTG 57.944 43.478 0.00 0.00 0.00 3.51
2770 2793 5.314923 ACATTTTTCATGAGTGGAATCCG 57.685 39.130 0.00 0.00 0.00 4.18
2775 2798 7.094248 CCACATTCTACATTTTTCATGAGTGGA 60.094 37.037 13.73 5.33 41.97 4.02
2866 2889 9.994432 GTACTTATCAGTCTCCAAAATGAAATG 57.006 33.333 0.00 0.00 34.06 2.32
2885 2908 5.250200 TCTTTGGTCGGCATTTGTACTTAT 58.750 37.500 0.00 0.00 0.00 1.73
2958 2981 5.163622 CCAGCATCGATCACTTACCAAAATT 60.164 40.000 0.00 0.00 0.00 1.82
2967 2990 0.620556 AACCCCAGCATCGATCACTT 59.379 50.000 0.00 0.00 0.00 3.16
3005 3028 5.014123 TCCACATTCATCCAAGGAAGTTAGT 59.986 40.000 0.00 0.00 0.00 2.24
3006 3029 5.355350 GTCCACATTCATCCAAGGAAGTTAG 59.645 44.000 0.00 0.00 0.00 2.34
3007 3030 5.253330 GTCCACATTCATCCAAGGAAGTTA 58.747 41.667 0.00 0.00 0.00 2.24
3008 3031 4.082125 GTCCACATTCATCCAAGGAAGTT 58.918 43.478 0.00 0.00 0.00 2.66
3009 3032 3.562176 GGTCCACATTCATCCAAGGAAGT 60.562 47.826 0.00 0.00 0.00 3.01
3010 3033 3.019564 GGTCCACATTCATCCAAGGAAG 58.980 50.000 0.00 0.00 0.00 3.46
3011 3034 2.649312 AGGTCCACATTCATCCAAGGAA 59.351 45.455 0.00 0.00 0.00 3.36
3012 3035 2.278245 AGGTCCACATTCATCCAAGGA 58.722 47.619 0.00 0.00 0.00 3.36
3013 3036 2.756760 CAAGGTCCACATTCATCCAAGG 59.243 50.000 0.00 0.00 0.00 3.61
3014 3037 2.165030 GCAAGGTCCACATTCATCCAAG 59.835 50.000 0.00 0.00 0.00 3.61
3015 3038 2.170166 GCAAGGTCCACATTCATCCAA 58.830 47.619 0.00 0.00 0.00 3.53
3016 3039 1.355381 AGCAAGGTCCACATTCATCCA 59.645 47.619 0.00 0.00 0.00 3.41
3017 3040 2.134789 AGCAAGGTCCACATTCATCC 57.865 50.000 0.00 0.00 0.00 3.51
3018 3041 3.084039 TCAAGCAAGGTCCACATTCATC 58.916 45.455 0.00 0.00 0.00 2.92
3019 3042 3.159213 TCAAGCAAGGTCCACATTCAT 57.841 42.857 0.00 0.00 0.00 2.57
3035 3058 3.495806 GGGGTATGGCTCTCAGATTCAAG 60.496 52.174 0.00 0.00 0.00 3.02
3036 3059 2.439507 GGGGTATGGCTCTCAGATTCAA 59.560 50.000 0.00 0.00 0.00 2.69
3037 3060 2.050144 GGGGTATGGCTCTCAGATTCA 58.950 52.381 0.00 0.00 0.00 2.57
3038 3061 2.050144 TGGGGTATGGCTCTCAGATTC 58.950 52.381 0.00 0.00 0.00 2.52
3088 3111 7.981225 ACATGGGCACATTTCTACAATAAAATC 59.019 33.333 0.00 0.00 34.35 2.17
3141 3389 3.314553 ACTAGTCGTGTGTTGCATGTAC 58.685 45.455 0.00 0.00 35.64 2.90
3192 3444 9.703892 TTAATCTTGGAACCAACATTAATTGTG 57.296 29.630 16.91 1.30 38.99 3.33
3206 3458 7.118101 TGCATCAAAAGCAATTAATCTTGGAAC 59.882 33.333 0.00 0.00 39.39 3.62
3324 3577 8.922237 CAGAACTATACAGCCATCTATATCCAT 58.078 37.037 0.00 0.00 0.00 3.41
3341 3594 9.489084 CGGTAAATCCAAATGATCAGAACTATA 57.511 33.333 0.09 0.00 35.57 1.31
3346 3599 5.588648 GTCCGGTAAATCCAAATGATCAGAA 59.411 40.000 0.00 0.00 35.57 3.02
3349 3602 5.110814 AGTCCGGTAAATCCAAATGATCA 57.889 39.130 0.00 0.00 35.57 2.92
3363 3616 0.172578 CTCAATGCACGAGTCCGGTA 59.827 55.000 0.00 0.00 40.78 4.02
3367 3620 0.320771 ACCACTCAATGCACGAGTCC 60.321 55.000 15.88 0.00 41.80 3.85
3368 3621 0.792640 CACCACTCAATGCACGAGTC 59.207 55.000 15.88 0.00 41.80 3.36
3397 3681 3.572255 TGTGTGAAATAGGCAAGGAAACC 59.428 43.478 0.00 0.00 0.00 3.27
3417 3701 4.761739 CCACACATGTCACCTAATTTCTGT 59.238 41.667 0.00 0.00 0.00 3.41
3420 3704 5.106157 CCTTCCACACATGTCACCTAATTTC 60.106 44.000 0.00 0.00 0.00 2.17
3431 3715 1.053424 ACCGTACCTTCCACACATGT 58.947 50.000 0.00 0.00 0.00 3.21
3455 3739 1.474478 TCAGCGGTCAACTTGCAAAAA 59.526 42.857 0.00 0.00 0.00 1.94
3457 3741 0.662619 CTCAGCGGTCAACTTGCAAA 59.337 50.000 0.00 0.00 0.00 3.68
3458 3742 1.165907 CCTCAGCGGTCAACTTGCAA 61.166 55.000 0.00 0.00 0.00 4.08
3459 3743 1.597854 CCTCAGCGGTCAACTTGCA 60.598 57.895 0.00 0.00 0.00 4.08
3460 3744 2.970974 GCCTCAGCGGTCAACTTGC 61.971 63.158 0.00 0.00 34.25 4.01
3461 3745 0.957395 ATGCCTCAGCGGTCAACTTG 60.957 55.000 0.00 0.00 44.31 3.16
3462 3746 0.613260 TATGCCTCAGCGGTCAACTT 59.387 50.000 0.00 0.00 44.31 2.66
3464 3748 1.599542 GATTATGCCTCAGCGGTCAAC 59.400 52.381 0.00 0.00 44.31 3.18
3467 3751 1.606737 GGAGATTATGCCTCAGCGGTC 60.607 57.143 0.00 0.00 44.31 4.79
3468 3752 0.394565 GGAGATTATGCCTCAGCGGT 59.605 55.000 0.00 0.00 44.31 5.68
3469 3753 0.668706 CGGAGATTATGCCTCAGCGG 60.669 60.000 0.00 0.00 44.31 5.52
3470 3754 1.287730 GCGGAGATTATGCCTCAGCG 61.288 60.000 0.00 0.00 44.31 5.18
3471 3755 0.250038 TGCGGAGATTATGCCTCAGC 60.250 55.000 8.02 8.02 46.88 4.26
3472 3756 2.245159 TTGCGGAGATTATGCCTCAG 57.755 50.000 0.00 0.00 32.48 3.35
3473 3757 2.936919 ATTGCGGAGATTATGCCTCA 57.063 45.000 0.00 0.00 32.48 3.86
3474 3758 4.193826 TCTATTGCGGAGATTATGCCTC 57.806 45.455 0.00 0.00 0.00 4.70
3475 3759 4.469227 AGATCTATTGCGGAGATTATGCCT 59.531 41.667 0.00 0.00 33.71 4.75
3481 3816 2.636893 AGGCAGATCTATTGCGGAGATT 59.363 45.455 0.00 0.00 42.42 2.40
3489 3824 3.008813 AGGTGGCATAGGCAGATCTATTG 59.991 47.826 0.15 0.00 43.71 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.