Multiple sequence alignment - TraesCS2B01G212000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G212000 chr2B 100.000 3279 0 0 1324 4602 195693598 195690320 0.000000e+00 6056
1 TraesCS2B01G212000 chr2B 100.000 1121 0 0 1 1121 195694921 195693801 0.000000e+00 2071
2 TraesCS2B01G212000 chr2B 94.891 137 7 0 3697 3833 114324928 114324792 1.000000e-51 215
3 TraesCS2B01G212000 chr2B 95.522 134 5 1 3699 3832 375093993 375093861 3.610000e-51 213
4 TraesCS2B01G212000 chr2D 97.854 2377 51 0 1324 3700 137592585 137590209 0.000000e+00 4108
5 TraesCS2B01G212000 chr2D 95.006 781 21 4 3824 4602 137590210 137589446 0.000000e+00 1210
6 TraesCS2B01G212000 chr2D 93.789 322 12 3 801 1121 137592888 137592574 1.160000e-130 477
7 TraesCS2B01G212000 chr2A 97.375 2248 59 0 1453 3700 164266604 164268851 0.000000e+00 3825
8 TraesCS2B01G212000 chr2A 96.546 579 13 2 3824 4401 164268850 164269422 0.000000e+00 952
9 TraesCS2B01G212000 chr2A 82.366 879 83 36 272 1121 164265470 164266305 0.000000e+00 699
10 TraesCS2B01G212000 chr2A 91.228 171 14 1 4433 4602 164269422 164269592 9.960000e-57 231
11 TraesCS2B01G212000 chrUn 100.000 403 0 0 3226 3628 478410716 478410314 0.000000e+00 745
12 TraesCS2B01G212000 chr1D 96.324 136 4 1 3691 3826 445057538 445057672 5.990000e-54 222
13 TraesCS2B01G212000 chr5B 96.923 130 4 0 3699 3828 327750364 327750235 7.750000e-53 219
14 TraesCS2B01G212000 chr6B 93.793 145 6 1 3699 3843 209249735 209249876 1.000000e-51 215
15 TraesCS2B01G212000 chr4D 96.850 127 4 0 3699 3825 614527 614653 3.610000e-51 213
16 TraesCS2B01G212000 chr6A 93.617 141 8 1 3699 3839 2728063 2727924 4.670000e-50 209
17 TraesCS2B01G212000 chr7D 91.946 149 6 5 3682 3826 206567635 206567781 2.170000e-48 204
18 TraesCS2B01G212000 chr4B 91.892 148 8 4 3683 3829 398240040 398240184 2.170000e-48 204


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G212000 chr2B 195690320 195694921 4601 True 4063.500000 6056 100.000000 1 4602 2 chr2B.!!$R3 4601
1 TraesCS2B01G212000 chr2D 137589446 137592888 3442 True 1931.666667 4108 95.549667 801 4602 3 chr2D.!!$R1 3801
2 TraesCS2B01G212000 chr2A 164265470 164269592 4122 False 1426.750000 3825 91.878750 272 4602 4 chr2A.!!$F1 4330

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
920 948 0.041238 TCCGGTCCTCTTCTCCATGT 59.959 55.0 0.00 0.0 0.0 3.21 F
1119 1147 0.537653 CCCCTCTCCGACTTTTCTCC 59.462 60.0 0.00 0.0 0.0 3.71 F
2068 2277 0.392193 CTGCTGGCTTCGAACCTGAT 60.392 55.0 19.99 0.0 0.0 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1996 2205 1.033202 TATAGAGTGCACCACGCCGA 61.033 55.000 14.63 0.0 41.33 5.54 R
2258 2467 2.413310 TCCGGCTGAATTCCCTTAAC 57.587 50.000 2.27 0.0 0.00 2.01 R
3699 3908 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.604139 GTCCCAAATCCCAAAGTTCCA 58.396 47.619 0.00 0.00 0.00 3.53
21 22 2.299013 GTCCCAAATCCCAAAGTTCCAC 59.701 50.000 0.00 0.00 0.00 4.02
22 23 1.623311 CCCAAATCCCAAAGTTCCACC 59.377 52.381 0.00 0.00 0.00 4.61
23 24 2.608623 CCAAATCCCAAAGTTCCACCT 58.391 47.619 0.00 0.00 0.00 4.00
24 25 2.562738 CCAAATCCCAAAGTTCCACCTC 59.437 50.000 0.00 0.00 0.00 3.85
25 26 2.562738 CAAATCCCAAAGTTCCACCTCC 59.437 50.000 0.00 0.00 0.00 4.30
26 27 1.455822 ATCCCAAAGTTCCACCTCCA 58.544 50.000 0.00 0.00 0.00 3.86
27 28 1.455822 TCCCAAAGTTCCACCTCCAT 58.544 50.000 0.00 0.00 0.00 3.41
28 29 1.075374 TCCCAAAGTTCCACCTCCATG 59.925 52.381 0.00 0.00 0.00 3.66
29 30 1.075374 CCCAAAGTTCCACCTCCATGA 59.925 52.381 0.00 0.00 0.00 3.07
30 31 2.440409 CCAAAGTTCCACCTCCATGAG 58.560 52.381 0.00 0.00 0.00 2.90
31 32 1.815003 CAAAGTTCCACCTCCATGAGC 59.185 52.381 0.00 0.00 0.00 4.26
32 33 0.329596 AAGTTCCACCTCCATGAGCC 59.670 55.000 0.00 0.00 0.00 4.70
33 34 1.077429 GTTCCACCTCCATGAGCCC 60.077 63.158 0.00 0.00 0.00 5.19
34 35 1.229951 TTCCACCTCCATGAGCCCT 60.230 57.895 0.00 0.00 0.00 5.19
35 36 1.274703 TTCCACCTCCATGAGCCCTC 61.275 60.000 0.00 0.00 0.00 4.30
36 37 2.750657 CCACCTCCATGAGCCCTCC 61.751 68.421 0.00 0.00 0.00 4.30
37 38 1.692042 CACCTCCATGAGCCCTCCT 60.692 63.158 0.00 0.00 0.00 3.69
38 39 1.383803 ACCTCCATGAGCCCTCCTC 60.384 63.158 0.00 0.00 41.15 3.71
39 40 2.146061 CCTCCATGAGCCCTCCTCC 61.146 68.421 0.00 0.00 39.98 4.30
40 41 2.040464 TCCATGAGCCCTCCTCCC 60.040 66.667 0.00 0.00 39.98 4.30
41 42 3.174265 CCATGAGCCCTCCTCCCC 61.174 72.222 0.00 0.00 39.98 4.81
42 43 3.174265 CATGAGCCCTCCTCCCCC 61.174 72.222 0.00 0.00 39.98 5.40
43 44 3.710631 ATGAGCCCTCCTCCCCCA 61.711 66.667 0.00 0.00 39.98 4.96
44 45 3.058573 ATGAGCCCTCCTCCCCCAT 62.059 63.158 0.00 0.00 39.98 4.00
45 46 1.689124 ATGAGCCCTCCTCCCCCATA 61.689 60.000 0.00 0.00 39.98 2.74
46 47 1.162085 GAGCCCTCCTCCCCCATAT 59.838 63.158 0.00 0.00 34.35 1.78
47 48 0.912006 GAGCCCTCCTCCCCCATATC 60.912 65.000 0.00 0.00 34.35 1.63
48 49 1.925972 GCCCTCCTCCCCCATATCC 60.926 68.421 0.00 0.00 0.00 2.59
49 50 1.613630 CCCTCCTCCCCCATATCCG 60.614 68.421 0.00 0.00 0.00 4.18
50 51 1.613630 CCTCCTCCCCCATATCCGG 60.614 68.421 0.00 0.00 0.00 5.14
51 52 2.203938 TCCTCCCCCATATCCGGC 60.204 66.667 0.00 0.00 0.00 6.13
52 53 3.706373 CCTCCCCCATATCCGGCG 61.706 72.222 0.00 0.00 0.00 6.46
53 54 3.706373 CTCCCCCATATCCGGCGG 61.706 72.222 22.51 22.51 0.00 6.13
54 55 4.242586 TCCCCCATATCCGGCGGA 62.243 66.667 33.10 33.10 35.55 5.54
55 56 3.009115 CCCCCATATCCGGCGGAT 61.009 66.667 39.77 39.77 45.40 4.18
56 57 2.584608 CCCCATATCCGGCGGATC 59.415 66.667 41.83 0.00 42.11 3.36
57 58 2.584608 CCCATATCCGGCGGATCC 59.415 66.667 41.83 0.00 42.11 3.36
58 59 1.990060 CCCATATCCGGCGGATCCT 60.990 63.158 41.83 27.91 42.11 3.24
59 60 0.686441 CCCATATCCGGCGGATCCTA 60.686 60.000 41.83 26.92 42.11 2.94
60 61 1.414158 CCATATCCGGCGGATCCTAT 58.586 55.000 41.83 27.89 42.11 2.57
61 62 1.762957 CCATATCCGGCGGATCCTATT 59.237 52.381 41.83 22.93 42.11 1.73
62 63 2.170607 CCATATCCGGCGGATCCTATTT 59.829 50.000 41.83 22.16 42.11 1.40
63 64 3.198068 CATATCCGGCGGATCCTATTTG 58.802 50.000 41.83 25.05 42.11 2.32
64 65 0.324943 ATCCGGCGGATCCTATTTGG 59.675 55.000 34.54 4.69 38.09 3.28
65 66 1.966451 CCGGCGGATCCTATTTGGC 60.966 63.158 24.41 4.23 35.26 4.52
66 67 2.317609 CGGCGGATCCTATTTGGCG 61.318 63.158 15.92 15.92 42.05 5.69
67 68 2.617274 GGCGGATCCTATTTGGCGC 61.617 63.158 10.75 0.00 41.79 6.53
68 69 1.891919 GCGGATCCTATTTGGCGCA 60.892 57.895 10.83 0.00 42.00 6.09
69 70 1.237285 GCGGATCCTATTTGGCGCAT 61.237 55.000 10.83 0.00 42.00 4.73
70 71 1.943968 GCGGATCCTATTTGGCGCATA 60.944 52.381 10.83 0.00 42.00 3.14
71 72 2.002586 CGGATCCTATTTGGCGCATAG 58.997 52.381 10.83 8.04 35.26 2.23
72 73 2.359900 GGATCCTATTTGGCGCATAGG 58.640 52.381 20.88 20.88 43.44 2.57
73 74 2.290323 GGATCCTATTTGGCGCATAGGT 60.290 50.000 24.05 15.32 42.85 3.08
74 75 2.543777 TCCTATTTGGCGCATAGGTC 57.456 50.000 24.05 2.54 42.85 3.85
75 76 1.148310 CCTATTTGGCGCATAGGTCG 58.852 55.000 19.36 0.53 38.96 4.79
76 77 1.270094 CCTATTTGGCGCATAGGTCGA 60.270 52.381 19.36 0.00 38.96 4.20
77 78 1.792949 CTATTTGGCGCATAGGTCGAC 59.207 52.381 10.83 7.13 35.09 4.20
78 79 1.151777 ATTTGGCGCATAGGTCGACG 61.152 55.000 10.83 0.00 37.89 5.12
79 80 2.495366 TTTGGCGCATAGGTCGACGT 62.495 55.000 15.89 15.89 37.89 4.34
80 81 2.954868 GGCGCATAGGTCGACGTG 60.955 66.667 20.44 14.21 0.00 4.49
81 82 2.954868 GCGCATAGGTCGACGTGG 60.955 66.667 20.44 13.12 0.00 4.94
82 83 2.795973 CGCATAGGTCGACGTGGA 59.204 61.111 20.44 0.00 0.00 4.02
83 84 1.298413 CGCATAGGTCGACGTGGAG 60.298 63.158 20.44 10.41 0.00 3.86
84 85 1.589196 GCATAGGTCGACGTGGAGC 60.589 63.158 20.36 20.36 34.71 4.70
86 87 1.450848 ATAGGTCGACGTGGAGCGA 60.451 57.895 21.42 17.84 44.77 4.93
90 91 2.046988 TCGACGTGGAGCGACCTA 60.047 61.111 0.00 0.00 44.77 3.08
91 92 2.104859 TCGACGTGGAGCGACCTAG 61.105 63.158 0.00 0.00 44.77 3.02
92 93 2.102553 GACGTGGAGCGACCTAGC 59.897 66.667 0.00 0.00 44.77 3.42
93 94 3.736482 GACGTGGAGCGACCTAGCG 62.736 68.421 0.00 8.39 44.77 4.26
94 95 3.812019 CGTGGAGCGACCTAGCGT 61.812 66.667 4.77 0.00 44.77 5.07
95 96 2.202623 GTGGAGCGACCTAGCGTG 60.203 66.667 4.77 0.00 43.00 5.34
96 97 2.675423 TGGAGCGACCTAGCGTGT 60.675 61.111 4.77 0.00 43.00 4.49
97 98 1.377594 TGGAGCGACCTAGCGTGTA 60.378 57.895 4.77 0.00 43.00 2.90
98 99 1.063811 GGAGCGACCTAGCGTGTAC 59.936 63.158 0.00 0.00 43.00 2.90
99 100 1.063811 GAGCGACCTAGCGTGTACC 59.936 63.158 0.00 0.00 43.00 3.34
100 101 2.103736 GCGACCTAGCGTGTACCC 59.896 66.667 0.00 0.00 0.00 3.69
101 102 2.803479 CGACCTAGCGTGTACCCC 59.197 66.667 0.00 0.00 0.00 4.95
102 103 2.779033 CGACCTAGCGTGTACCCCC 61.779 68.421 0.00 0.00 0.00 5.40
103 104 1.380920 GACCTAGCGTGTACCCCCT 60.381 63.158 0.00 0.00 0.00 4.79
104 105 1.380920 ACCTAGCGTGTACCCCCTC 60.381 63.158 0.00 0.00 0.00 4.30
105 106 1.076192 CCTAGCGTGTACCCCCTCT 60.076 63.158 0.00 0.00 0.00 3.69
106 107 0.686769 CCTAGCGTGTACCCCCTCTT 60.687 60.000 0.00 0.00 0.00 2.85
107 108 1.192428 CTAGCGTGTACCCCCTCTTT 58.808 55.000 0.00 0.00 0.00 2.52
108 109 0.899720 TAGCGTGTACCCCCTCTTTG 59.100 55.000 0.00 0.00 0.00 2.77
109 110 0.834687 AGCGTGTACCCCCTCTTTGA 60.835 55.000 0.00 0.00 0.00 2.69
110 111 0.252197 GCGTGTACCCCCTCTTTGAT 59.748 55.000 0.00 0.00 0.00 2.57
111 112 1.742750 GCGTGTACCCCCTCTTTGATC 60.743 57.143 0.00 0.00 0.00 2.92
112 113 1.470979 CGTGTACCCCCTCTTTGATCG 60.471 57.143 0.00 0.00 0.00 3.69
113 114 1.553704 GTGTACCCCCTCTTTGATCGT 59.446 52.381 0.00 0.00 0.00 3.73
114 115 2.027469 GTGTACCCCCTCTTTGATCGTT 60.027 50.000 0.00 0.00 0.00 3.85
115 116 2.235402 TGTACCCCCTCTTTGATCGTTC 59.765 50.000 0.00 0.00 0.00 3.95
116 117 0.249398 ACCCCCTCTTTGATCGTTCG 59.751 55.000 0.00 0.00 0.00 3.95
117 118 1.090052 CCCCCTCTTTGATCGTTCGC 61.090 60.000 0.00 0.00 0.00 4.70
118 119 0.391130 CCCCTCTTTGATCGTTCGCA 60.391 55.000 0.00 0.00 0.00 5.10
119 120 0.721718 CCCTCTTTGATCGTTCGCAC 59.278 55.000 0.00 0.00 0.00 5.34
120 121 1.428448 CCTCTTTGATCGTTCGCACA 58.572 50.000 0.00 0.00 0.00 4.57
121 122 1.391485 CCTCTTTGATCGTTCGCACAG 59.609 52.381 0.00 0.00 0.00 3.66
122 123 2.061773 CTCTTTGATCGTTCGCACAGT 58.938 47.619 0.00 0.00 0.00 3.55
123 124 1.792367 TCTTTGATCGTTCGCACAGTG 59.208 47.619 0.00 0.00 0.00 3.66
124 125 0.865111 TTTGATCGTTCGCACAGTGG 59.135 50.000 1.84 0.00 0.00 4.00
125 126 0.948623 TTGATCGTTCGCACAGTGGG 60.949 55.000 11.41 11.41 0.00 4.61
126 127 1.374252 GATCGTTCGCACAGTGGGT 60.374 57.895 16.68 0.00 0.00 4.51
141 142 3.131850 GGGTGGCCCATATTTCAGG 57.868 57.895 0.00 0.00 44.65 3.86
142 143 0.555769 GGGTGGCCCATATTTCAGGA 59.444 55.000 0.00 0.00 44.65 3.86
143 144 1.147817 GGGTGGCCCATATTTCAGGAT 59.852 52.381 0.00 0.00 44.65 3.24
144 145 2.426268 GGGTGGCCCATATTTCAGGATT 60.426 50.000 0.00 0.00 44.65 3.01
145 146 3.308401 GGTGGCCCATATTTCAGGATTT 58.692 45.455 0.00 0.00 0.00 2.17
146 147 3.321968 GGTGGCCCATATTTCAGGATTTC 59.678 47.826 0.00 0.00 0.00 2.17
147 148 3.960102 GTGGCCCATATTTCAGGATTTCA 59.040 43.478 0.00 0.00 0.00 2.69
148 149 4.590222 GTGGCCCATATTTCAGGATTTCAT 59.410 41.667 0.00 0.00 0.00 2.57
149 150 4.589798 TGGCCCATATTTCAGGATTTCATG 59.410 41.667 0.00 0.00 0.00 3.07
150 151 4.590222 GGCCCATATTTCAGGATTTCATGT 59.410 41.667 0.00 0.00 0.00 3.21
151 152 5.510179 GGCCCATATTTCAGGATTTCATGTG 60.510 44.000 0.00 0.00 0.00 3.21
152 153 5.069516 GCCCATATTTCAGGATTTCATGTGT 59.930 40.000 0.00 0.00 0.00 3.72
153 154 6.509656 CCCATATTTCAGGATTTCATGTGTG 58.490 40.000 0.00 0.00 0.00 3.82
154 155 6.097270 CCCATATTTCAGGATTTCATGTGTGT 59.903 38.462 0.00 0.00 0.00 3.72
155 156 7.364056 CCCATATTTCAGGATTTCATGTGTGTT 60.364 37.037 0.00 0.00 0.00 3.32
156 157 7.703621 CCATATTTCAGGATTTCATGTGTGTTC 59.296 37.037 0.00 0.00 0.00 3.18
157 158 6.906157 ATTTCAGGATTTCATGTGTGTTCT 57.094 33.333 0.00 0.00 0.00 3.01
158 159 5.947228 TTCAGGATTTCATGTGTGTTCTC 57.053 39.130 0.00 0.00 0.00 2.87
159 160 4.971939 TCAGGATTTCATGTGTGTTCTCA 58.028 39.130 0.00 0.00 0.00 3.27
160 161 4.756642 TCAGGATTTCATGTGTGTTCTCAC 59.243 41.667 0.00 0.00 44.08 3.51
161 162 4.074970 AGGATTTCATGTGTGTTCTCACC 58.925 43.478 0.00 0.00 43.26 4.02
162 163 3.120199 GGATTTCATGTGTGTTCTCACCG 60.120 47.826 0.00 0.00 43.26 4.94
163 164 1.877637 TTCATGTGTGTTCTCACCGG 58.122 50.000 0.00 0.00 43.26 5.28
164 165 0.756294 TCATGTGTGTTCTCACCGGT 59.244 50.000 0.00 0.00 43.26 5.28
165 166 1.140052 TCATGTGTGTTCTCACCGGTT 59.860 47.619 2.97 0.00 43.26 4.44
166 167 1.946768 CATGTGTGTTCTCACCGGTTT 59.053 47.619 2.97 0.00 43.26 3.27
167 168 2.116827 TGTGTGTTCTCACCGGTTTT 57.883 45.000 2.97 0.00 43.26 2.43
168 169 1.740585 TGTGTGTTCTCACCGGTTTTG 59.259 47.619 2.97 0.00 43.26 2.44
169 170 1.064952 GTGTGTTCTCACCGGTTTTGG 59.935 52.381 2.97 0.00 43.26 3.28
170 171 0.666374 GTGTTCTCACCGGTTTTGGG 59.334 55.000 2.97 0.00 38.51 4.12
171 172 0.547075 TGTTCTCACCGGTTTTGGGA 59.453 50.000 2.97 0.00 0.00 4.37
172 173 1.064611 TGTTCTCACCGGTTTTGGGAA 60.065 47.619 2.97 2.26 30.70 3.97
173 174 1.607148 GTTCTCACCGGTTTTGGGAAG 59.393 52.381 2.97 0.00 34.04 3.46
174 175 0.109723 TCTCACCGGTTTTGGGAAGG 59.890 55.000 2.97 0.00 0.00 3.46
175 176 0.109723 CTCACCGGTTTTGGGAAGGA 59.890 55.000 2.97 0.00 0.00 3.36
176 177 0.179012 TCACCGGTTTTGGGAAGGAC 60.179 55.000 2.97 0.00 0.00 3.85
177 178 1.152138 ACCGGTTTTGGGAAGGACC 59.848 57.895 0.00 0.00 38.08 4.46
178 179 1.358051 ACCGGTTTTGGGAAGGACCT 61.358 55.000 0.00 0.00 38.98 3.85
179 180 0.694196 CCGGTTTTGGGAAGGACCTA 59.306 55.000 0.00 0.00 38.98 3.08
180 181 1.339727 CCGGTTTTGGGAAGGACCTAG 60.340 57.143 0.00 0.00 38.98 3.02
181 182 1.626825 CGGTTTTGGGAAGGACCTAGA 59.373 52.381 0.00 0.00 38.98 2.43
182 183 2.039348 CGGTTTTGGGAAGGACCTAGAA 59.961 50.000 0.00 0.00 38.98 2.10
183 184 3.418995 GGTTTTGGGAAGGACCTAGAAC 58.581 50.000 0.00 0.00 41.29 3.01
184 185 3.418995 GTTTTGGGAAGGACCTAGAACC 58.581 50.000 0.00 0.00 37.95 3.62
185 186 2.735259 TTGGGAAGGACCTAGAACCT 57.265 50.000 0.00 0.00 38.98 3.50
192 193 3.562108 AGGACCTAGAACCTTCCTTGA 57.438 47.619 0.00 0.00 34.65 3.02
193 194 3.870559 AGGACCTAGAACCTTCCTTGAA 58.129 45.455 0.00 0.00 34.65 2.69
194 195 4.439860 AGGACCTAGAACCTTCCTTGAAT 58.560 43.478 0.00 0.00 34.65 2.57
195 196 4.471747 AGGACCTAGAACCTTCCTTGAATC 59.528 45.833 0.00 0.00 34.65 2.52
196 197 4.434520 GACCTAGAACCTTCCTTGAATCG 58.565 47.826 0.00 0.00 0.00 3.34
197 198 3.197983 ACCTAGAACCTTCCTTGAATCGG 59.802 47.826 0.00 0.00 0.00 4.18
198 199 2.789409 AGAACCTTCCTTGAATCGGG 57.211 50.000 0.00 0.00 0.00 5.14
199 200 2.266279 AGAACCTTCCTTGAATCGGGA 58.734 47.619 0.00 0.00 0.00 5.14
200 201 2.846827 AGAACCTTCCTTGAATCGGGAT 59.153 45.455 0.00 0.00 0.00 3.85
201 202 3.267031 AGAACCTTCCTTGAATCGGGATT 59.733 43.478 0.00 0.00 0.00 3.01
202 203 3.739401 ACCTTCCTTGAATCGGGATTT 57.261 42.857 0.00 0.00 0.00 2.17
203 204 4.047627 ACCTTCCTTGAATCGGGATTTT 57.952 40.909 0.00 0.00 0.00 1.82
204 205 4.017126 ACCTTCCTTGAATCGGGATTTTC 58.983 43.478 0.00 0.00 0.00 2.29
205 206 4.263949 ACCTTCCTTGAATCGGGATTTTCT 60.264 41.667 0.00 0.00 0.00 2.52
206 207 4.706962 CCTTCCTTGAATCGGGATTTTCTT 59.293 41.667 0.00 0.00 0.00 2.52
207 208 5.185828 CCTTCCTTGAATCGGGATTTTCTTT 59.814 40.000 0.00 0.00 0.00 2.52
208 209 6.295292 CCTTCCTTGAATCGGGATTTTCTTTT 60.295 38.462 0.00 0.00 0.00 2.27
209 210 6.664428 TCCTTGAATCGGGATTTTCTTTTT 57.336 33.333 0.00 0.00 0.00 1.94
459 461 6.976636 TTAAATCCGGGAATTCAAAAATGC 57.023 33.333 7.93 0.00 0.00 3.56
470 472 8.179615 GGGAATTCAAAAATGCTCATCAAATTC 58.820 33.333 7.93 0.00 32.51 2.17
564 570 7.621832 TCTTGAATACAATTTTTGTTCAGCG 57.378 32.000 0.00 0.00 42.22 5.18
571 577 5.591099 ACAATTTTTGTTCAGCGAGTTCAT 58.409 33.333 0.00 0.00 42.22 2.57
572 578 6.042143 ACAATTTTTGTTCAGCGAGTTCATT 58.958 32.000 0.00 0.00 42.22 2.57
573 579 6.534793 ACAATTTTTGTTCAGCGAGTTCATTT 59.465 30.769 0.00 0.00 42.22 2.32
574 580 7.064490 ACAATTTTTGTTCAGCGAGTTCATTTT 59.936 29.630 0.00 0.00 42.22 1.82
575 581 6.959671 TTTTTGTTCAGCGAGTTCATTTTT 57.040 29.167 0.00 0.00 0.00 1.94
680 706 8.870160 AAAATTCATTGTCTTGAAATCGTGAA 57.130 26.923 0.00 0.00 38.98 3.18
681 707 7.858052 AATTCATTGTCTTGAAATCGTGAAC 57.142 32.000 0.00 0.00 38.98 3.18
683 709 7.722795 TTCATTGTCTTGAAATCGTGAACTA 57.277 32.000 0.00 0.00 32.82 2.24
684 710 7.722795 TCATTGTCTTGAAATCGTGAACTAA 57.277 32.000 0.00 0.00 0.00 2.24
685 711 8.148807 TCATTGTCTTGAAATCGTGAACTAAA 57.851 30.769 0.00 0.00 0.00 1.85
689 715 9.796120 TTGTCTTGAAATCGTGAACTAAATTTT 57.204 25.926 0.00 0.00 0.00 1.82
722 748 6.820470 TTTGTTTTGAATTCGGTGAACATC 57.180 33.333 13.08 0.00 0.00 3.06
726 752 7.038659 TGTTTTGAATTCGGTGAACATCTTTT 58.961 30.769 0.04 0.00 0.00 2.27
727 753 7.009999 TGTTTTGAATTCGGTGAACATCTTTTG 59.990 33.333 0.04 0.00 0.00 2.44
728 754 4.545610 TGAATTCGGTGAACATCTTTTGC 58.454 39.130 0.04 0.00 0.00 3.68
729 755 4.278170 TGAATTCGGTGAACATCTTTTGCT 59.722 37.500 0.04 0.00 0.00 3.91
730 756 3.624326 TTCGGTGAACATCTTTTGCTG 57.376 42.857 0.00 0.00 0.00 4.41
732 758 3.210227 TCGGTGAACATCTTTTGCTGAA 58.790 40.909 0.00 0.00 0.00 3.02
733 759 3.820467 TCGGTGAACATCTTTTGCTGAAT 59.180 39.130 0.00 0.00 0.00 2.57
734 760 4.083324 TCGGTGAACATCTTTTGCTGAATC 60.083 41.667 0.00 0.00 0.00 2.52
735 761 4.488879 GGTGAACATCTTTTGCTGAATCC 58.511 43.478 0.00 0.00 0.00 3.01
736 762 4.022068 GGTGAACATCTTTTGCTGAATCCA 60.022 41.667 0.00 0.00 0.00 3.41
742 768 5.244402 ACATCTTTTGCTGAATCCATGAACA 59.756 36.000 0.00 0.00 0.00 3.18
744 770 6.349243 TCTTTTGCTGAATCCATGAACATT 57.651 33.333 0.00 0.00 0.00 2.71
813 840 4.489771 CTCGACCCCACATGGCCC 62.490 72.222 0.00 0.00 0.00 5.80
918 946 3.169099 CATATCCGGTCCTCTTCTCCAT 58.831 50.000 0.00 0.00 0.00 3.41
920 948 0.041238 TCCGGTCCTCTTCTCCATGT 59.959 55.000 0.00 0.00 0.00 3.21
1113 1141 1.985116 GCACTCCCCTCTCCGACTT 60.985 63.158 0.00 0.00 0.00 3.01
1114 1142 1.545706 GCACTCCCCTCTCCGACTTT 61.546 60.000 0.00 0.00 0.00 2.66
1115 1143 0.977395 CACTCCCCTCTCCGACTTTT 59.023 55.000 0.00 0.00 0.00 2.27
1116 1144 1.066787 CACTCCCCTCTCCGACTTTTC 60.067 57.143 0.00 0.00 0.00 2.29
1117 1145 1.203199 ACTCCCCTCTCCGACTTTTCT 60.203 52.381 0.00 0.00 0.00 2.52
1118 1146 1.478916 CTCCCCTCTCCGACTTTTCTC 59.521 57.143 0.00 0.00 0.00 2.87
1119 1147 0.537653 CCCCTCTCCGACTTTTCTCC 59.462 60.000 0.00 0.00 0.00 3.71
1120 1148 0.537653 CCCTCTCCGACTTTTCTCCC 59.462 60.000 0.00 0.00 0.00 4.30
1363 1391 2.055042 CCTCTCCTCCTCACACCCG 61.055 68.421 0.00 0.00 0.00 5.28
1505 1714 1.074084 CGCTCCTCTCCCTACTATCCA 59.926 57.143 0.00 0.00 0.00 3.41
1534 1743 4.468615 GCGCGCGACACTCTCTCT 62.469 66.667 37.18 0.00 0.00 3.10
1661 1870 2.039624 ACGTCCTCCAGCATCCCT 59.960 61.111 0.00 0.00 0.00 4.20
2056 2265 2.768492 CGAAATGAGGGCTGCTGGC 61.768 63.158 8.77 8.77 40.90 4.85
2068 2277 0.392193 CTGCTGGCTTCGAACCTGAT 60.392 55.000 19.99 0.00 0.00 2.90
2200 2409 3.678056 ACCTACAACTCGCTCATTTCA 57.322 42.857 0.00 0.00 0.00 2.69
2230 2439 5.894393 TGTAAAGGATGGGTTGTTGAAAGAA 59.106 36.000 0.00 0.00 0.00 2.52
2258 2467 2.102925 GAGCTCAAAGAGGAGATGGAGG 59.897 54.545 9.40 0.00 37.05 4.30
2369 2578 9.288576 GGACATATGATGAAATGTTGAGGAATA 57.711 33.333 10.38 0.00 36.48 1.75
2619 2828 6.238103 CGGGACACATATGTTTCACTCATTAC 60.238 42.308 19.37 3.23 39.95 1.89
2926 3135 2.637025 CACGGGCTGGTGAAAACG 59.363 61.111 0.00 0.00 40.38 3.60
2977 3186 3.260884 ACTTATCCGAAACAGAGAAGGCA 59.739 43.478 0.00 0.00 36.98 4.75
3121 3330 4.323104 GGAAGTTCTATCAACCTCAGCACT 60.323 45.833 2.25 0.00 0.00 4.40
3136 3345 4.578871 TCAGCACTGCAACATACAATAGT 58.421 39.130 3.30 0.00 0.00 2.12
3193 3402 4.965119 AAAGTGCGAAAATATCCTCACC 57.035 40.909 0.00 0.00 31.81 4.02
3205 3414 1.095600 TCCTCACCGAGATCAAGTCG 58.904 55.000 0.00 0.00 37.17 4.18
3628 3837 7.491048 ACATCAAACCTTGTTTGTATTTGTGAC 59.509 33.333 16.65 0.00 33.10 3.67
3648 3857 8.496707 TGTGACACGACAAGTAGATATAACTA 57.503 34.615 0.22 0.00 0.00 2.24
3698 3907 7.855784 TGGACTTCATAGTGGATATGTACAT 57.144 36.000 13.93 13.93 41.82 2.29
3699 3908 8.950007 TGGACTTCATAGTGGATATGTACATA 57.050 34.615 17.65 17.65 41.82 2.29
3700 3909 8.803235 TGGACTTCATAGTGGATATGTACATAC 58.197 37.037 17.69 7.98 41.82 2.39
3701 3910 9.026121 GGACTTCATAGTGGATATGTACATACT 57.974 37.037 17.69 14.72 41.82 2.12
3703 3912 9.026121 ACTTCATAGTGGATATGTACATACTCC 57.974 37.037 23.70 23.70 41.82 3.85
3704 3913 7.956328 TCATAGTGGATATGTACATACTCCC 57.044 40.000 25.54 21.82 41.82 4.30
3705 3914 7.709601 TCATAGTGGATATGTACATACTCCCT 58.290 38.462 25.54 23.39 41.82 4.20
3706 3915 7.834681 TCATAGTGGATATGTACATACTCCCTC 59.165 40.741 25.54 21.32 41.82 4.30
3707 3916 5.334421 AGTGGATATGTACATACTCCCTCC 58.666 45.833 25.54 22.75 0.00 4.30
3708 3917 4.158025 GTGGATATGTACATACTCCCTCCG 59.842 50.000 25.54 0.00 0.00 4.63
3709 3918 4.202641 TGGATATGTACATACTCCCTCCGT 60.203 45.833 25.54 9.49 0.00 4.69
3710 3919 4.398673 GGATATGTACATACTCCCTCCGTC 59.601 50.000 17.69 8.03 0.00 4.79
3711 3920 2.062971 TGTACATACTCCCTCCGTCC 57.937 55.000 0.00 0.00 0.00 4.79
3712 3921 1.326328 GTACATACTCCCTCCGTCCC 58.674 60.000 0.00 0.00 0.00 4.46
3713 3922 0.928505 TACATACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
3714 3923 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
3715 3924 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
3716 3925 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
3717 3926 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3718 3927 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3719 3928 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3720 3929 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3721 3930 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3722 3931 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3723 3932 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3724 3933 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3725 3934 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3726 3935 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3727 3936 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3728 3937 5.378332 TCCGTCCCAAAATTCTTGTCTTAA 58.622 37.500 0.00 0.00 0.00 1.85
3729 3938 5.828859 TCCGTCCCAAAATTCTTGTCTTAAA 59.171 36.000 0.00 0.00 0.00 1.52
3730 3939 6.492087 TCCGTCCCAAAATTCTTGTCTTAAAT 59.508 34.615 0.00 0.00 0.00 1.40
3731 3940 7.014808 TCCGTCCCAAAATTCTTGTCTTAAATT 59.985 33.333 0.00 0.00 0.00 1.82
3732 3941 7.655732 CCGTCCCAAAATTCTTGTCTTAAATTT 59.344 33.333 0.00 0.00 34.86 1.82
3733 3942 8.699749 CGTCCCAAAATTCTTGTCTTAAATTTC 58.300 33.333 0.00 0.00 32.84 2.17
3734 3943 9.764363 GTCCCAAAATTCTTGTCTTAAATTTCT 57.236 29.630 0.00 0.00 32.84 2.52
3735 3944 9.981114 TCCCAAAATTCTTGTCTTAAATTTCTC 57.019 29.630 0.00 0.00 32.84 2.87
3736 3945 9.987272 CCCAAAATTCTTGTCTTAAATTTCTCT 57.013 29.630 0.00 0.00 32.84 3.10
3747 3956 9.967346 TGTCTTAAATTTCTCTAGATACGGATG 57.033 33.333 0.00 0.00 0.00 3.51
3748 3957 9.968870 GTCTTAAATTTCTCTAGATACGGATGT 57.031 33.333 0.00 0.00 0.00 3.06
3764 3973 8.792831 ATACGGATGTATCTAACACTAAAACG 57.207 34.615 0.00 0.00 42.09 3.60
3765 3974 6.624423 ACGGATGTATCTAACACTAAAACGT 58.376 36.000 0.00 0.00 42.09 3.99
3766 3975 6.529125 ACGGATGTATCTAACACTAAAACGTG 59.471 38.462 0.00 0.00 42.09 4.49
3767 3976 6.748658 CGGATGTATCTAACACTAAAACGTGA 59.251 38.462 0.00 0.00 42.09 4.35
3768 3977 7.274033 CGGATGTATCTAACACTAAAACGTGAA 59.726 37.037 0.00 0.00 42.09 3.18
3769 3978 9.095065 GGATGTATCTAACACTAAAACGTGAAT 57.905 33.333 0.00 0.00 42.09 2.57
3779 3988 8.644318 ACACTAAAACGTGAATAGATACATCC 57.356 34.615 8.90 0.00 38.27 3.51
3780 3989 8.255206 ACACTAAAACGTGAATAGATACATCCA 58.745 33.333 8.90 0.00 38.27 3.41
3781 3990 9.261180 CACTAAAACGTGAATAGATACATCCAT 57.739 33.333 8.90 0.00 37.06 3.41
3800 4009 9.988815 ACATCCATATGTAGACAAATCTAAGAC 57.011 33.333 1.24 0.00 44.66 3.01
3801 4010 9.987272 CATCCATATGTAGACAAATCTAAGACA 57.013 33.333 1.24 0.00 39.20 3.41
3812 4021 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
3813 4022 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
3814 4023 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
3815 4024 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
3816 4025 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
3817 4026 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3818 4027 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3819 4028 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3820 4029 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3821 4030 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3822 4031 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3964 4173 6.469410 TGGTAGTTTTCCTAACCAGTACATG 58.531 40.000 0.00 0.00 31.85 3.21
4158 4368 3.503363 GCTCCTGGTGCATCGTGC 61.503 66.667 15.42 3.44 45.29 5.34
4208 4418 1.002792 GAGGCTGTGTTTTGGTCGTTC 60.003 52.381 0.00 0.00 0.00 3.95
4222 4432 0.032952 TCGTTCGCTGTATATGGGCC 59.967 55.000 0.00 0.00 0.00 5.80
4223 4433 0.033504 CGTTCGCTGTATATGGGCCT 59.966 55.000 4.53 0.00 0.00 5.19
4224 4434 1.271379 CGTTCGCTGTATATGGGCCTA 59.729 52.381 4.53 0.00 0.00 3.93
4225 4435 2.685100 GTTCGCTGTATATGGGCCTAC 58.315 52.381 4.53 0.00 0.00 3.18
4226 4436 1.263356 TCGCTGTATATGGGCCTACC 58.737 55.000 4.53 0.00 40.81 3.18
4268 4478 1.286354 CGGTTCGTGCGAGCCTTTTA 61.286 55.000 21.45 0.00 42.33 1.52
4269 4479 1.084289 GGTTCGTGCGAGCCTTTTAT 58.916 50.000 17.96 0.00 41.46 1.40
4370 4580 0.031585 TGTCGGTTCACAGAGGTTCG 59.968 55.000 0.00 0.00 0.00 3.95
4404 4614 1.527311 GCTGTTCTCTGTGTTCGGTTC 59.473 52.381 0.00 0.00 0.00 3.62
4423 4633 0.884704 CCACCTGTTGTGTTCTCGGG 60.885 60.000 0.00 0.00 43.85 5.14
4468 4678 0.881118 GGGCTTTGTCTTTCGCATCA 59.119 50.000 0.00 0.00 0.00 3.07
4487 4698 2.560542 TCAGTCTTCTCTGGTCTTCAGC 59.439 50.000 0.00 0.00 43.06 4.26
4507 4718 2.515901 GGCAGGGGTGTTGACAGT 59.484 61.111 0.00 0.00 0.00 3.55
4551 4762 0.392461 GGGCTATTCGTGTTCCTGCA 60.392 55.000 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.299013 GTGGAACTTTGGGATTTGGGAC 59.701 50.000 0.00 0.00 0.00 4.46
1 2 2.604139 GTGGAACTTTGGGATTTGGGA 58.396 47.619 0.00 0.00 0.00 4.37
2 3 1.623311 GGTGGAACTTTGGGATTTGGG 59.377 52.381 0.00 0.00 36.74 4.12
3 4 2.562738 GAGGTGGAACTTTGGGATTTGG 59.437 50.000 0.00 0.00 36.74 3.28
4 5 2.562738 GGAGGTGGAACTTTGGGATTTG 59.437 50.000 0.00 0.00 36.74 2.32
5 6 2.178984 TGGAGGTGGAACTTTGGGATTT 59.821 45.455 0.00 0.00 36.74 2.17
6 7 1.786441 TGGAGGTGGAACTTTGGGATT 59.214 47.619 0.00 0.00 36.74 3.01
7 8 1.455822 TGGAGGTGGAACTTTGGGAT 58.544 50.000 0.00 0.00 36.74 3.85
8 9 1.075374 CATGGAGGTGGAACTTTGGGA 59.925 52.381 0.00 0.00 36.74 4.37
9 10 1.075374 TCATGGAGGTGGAACTTTGGG 59.925 52.381 0.00 0.00 36.74 4.12
10 11 2.440409 CTCATGGAGGTGGAACTTTGG 58.560 52.381 0.00 0.00 36.74 3.28
11 12 1.815003 GCTCATGGAGGTGGAACTTTG 59.185 52.381 0.00 0.00 36.74 2.77
12 13 1.272147 GGCTCATGGAGGTGGAACTTT 60.272 52.381 0.00 0.00 36.74 2.66
13 14 0.329596 GGCTCATGGAGGTGGAACTT 59.670 55.000 0.00 0.00 36.74 2.66
14 15 1.566298 GGGCTCATGGAGGTGGAACT 61.566 60.000 0.00 0.00 36.74 3.01
15 16 1.077429 GGGCTCATGGAGGTGGAAC 60.077 63.158 0.00 0.00 0.00 3.62
16 17 1.229951 AGGGCTCATGGAGGTGGAA 60.230 57.895 0.00 0.00 0.00 3.53
17 18 1.690633 GAGGGCTCATGGAGGTGGA 60.691 63.158 0.00 0.00 0.00 4.02
18 19 2.750657 GGAGGGCTCATGGAGGTGG 61.751 68.421 0.00 0.00 0.00 4.61
19 20 1.692042 AGGAGGGCTCATGGAGGTG 60.692 63.158 0.00 0.00 0.00 4.00
20 21 1.383803 GAGGAGGGCTCATGGAGGT 60.384 63.158 0.00 0.00 0.00 3.85
21 22 2.146061 GGAGGAGGGCTCATGGAGG 61.146 68.421 0.00 0.00 0.00 4.30
22 23 2.146061 GGGAGGAGGGCTCATGGAG 61.146 68.421 0.00 0.00 0.00 3.86
23 24 2.040464 GGGAGGAGGGCTCATGGA 60.040 66.667 0.00 0.00 0.00 3.41
24 25 3.174265 GGGGAGGAGGGCTCATGG 61.174 72.222 0.00 0.00 0.00 3.66
25 26 3.174265 GGGGGAGGAGGGCTCATG 61.174 72.222 0.00 0.00 0.00 3.07
26 27 1.689124 TATGGGGGAGGAGGGCTCAT 61.689 60.000 0.00 0.00 0.00 2.90
27 28 1.689124 ATATGGGGGAGGAGGGCTCA 61.689 60.000 0.00 0.00 0.00 4.26
28 29 0.912006 GATATGGGGGAGGAGGGCTC 60.912 65.000 0.00 0.00 0.00 4.70
29 30 1.162085 GATATGGGGGAGGAGGGCT 59.838 63.158 0.00 0.00 0.00 5.19
30 31 1.925972 GGATATGGGGGAGGAGGGC 60.926 68.421 0.00 0.00 0.00 5.19
31 32 1.613630 CGGATATGGGGGAGGAGGG 60.614 68.421 0.00 0.00 0.00 4.30
32 33 1.613630 CCGGATATGGGGGAGGAGG 60.614 68.421 0.00 0.00 0.00 4.30
33 34 2.294078 GCCGGATATGGGGGAGGAG 61.294 68.421 5.05 0.00 0.00 3.69
34 35 2.203938 GCCGGATATGGGGGAGGA 60.204 66.667 5.05 0.00 0.00 3.71
35 36 3.706373 CGCCGGATATGGGGGAGG 61.706 72.222 5.05 0.00 39.70 4.30
39 40 2.584608 GATCCGCCGGATATGGGG 59.415 66.667 20.43 0.00 43.27 4.96
40 41 0.686441 TAGGATCCGCCGGATATGGG 60.686 60.000 20.43 0.00 43.27 4.00
41 42 1.414158 ATAGGATCCGCCGGATATGG 58.586 55.000 20.43 0.00 43.27 2.74
42 43 3.198068 CAAATAGGATCCGCCGGATATG 58.802 50.000 20.43 7.74 43.27 1.78
43 44 2.170607 CCAAATAGGATCCGCCGGATAT 59.829 50.000 20.43 13.39 43.27 1.63
44 45 1.553248 CCAAATAGGATCCGCCGGATA 59.447 52.381 20.43 3.69 43.27 2.59
45 46 0.324943 CCAAATAGGATCCGCCGGAT 59.675 55.000 20.53 20.53 46.28 4.18
46 47 1.752198 CCAAATAGGATCCGCCGGA 59.248 57.895 8.97 8.97 43.43 5.14
47 48 1.966451 GCCAAATAGGATCCGCCGG 60.966 63.158 5.98 0.00 43.43 6.13
48 49 2.317609 CGCCAAATAGGATCCGCCG 61.318 63.158 5.98 0.00 43.43 6.46
49 50 2.617274 GCGCCAAATAGGATCCGCC 61.617 63.158 5.98 0.00 39.54 6.13
50 51 1.237285 ATGCGCCAAATAGGATCCGC 61.237 55.000 4.18 3.86 43.81 5.54
51 52 2.002586 CTATGCGCCAAATAGGATCCG 58.997 52.381 4.18 0.00 41.22 4.18
52 53 2.290323 ACCTATGCGCCAAATAGGATCC 60.290 50.000 29.30 2.48 46.66 3.36
53 54 3.003480 GACCTATGCGCCAAATAGGATC 58.997 50.000 29.30 20.72 46.66 3.36
54 55 2.612972 CGACCTATGCGCCAAATAGGAT 60.613 50.000 29.30 17.79 46.66 3.24
55 56 1.270094 CGACCTATGCGCCAAATAGGA 60.270 52.381 29.30 0.79 46.66 2.94
57 58 1.792949 GTCGACCTATGCGCCAAATAG 59.207 52.381 4.18 5.54 0.00 1.73
58 59 1.860676 GTCGACCTATGCGCCAAATA 58.139 50.000 4.18 0.00 0.00 1.40
59 60 1.151777 CGTCGACCTATGCGCCAAAT 61.152 55.000 10.58 0.00 0.00 2.32
60 61 1.807981 CGTCGACCTATGCGCCAAA 60.808 57.895 10.58 0.00 0.00 3.28
61 62 2.202690 CGTCGACCTATGCGCCAA 60.203 61.111 10.58 0.00 0.00 4.52
62 63 3.445687 ACGTCGACCTATGCGCCA 61.446 61.111 10.58 0.00 0.00 5.69
63 64 2.954868 CACGTCGACCTATGCGCC 60.955 66.667 10.58 0.00 0.00 6.53
64 65 2.954868 CCACGTCGACCTATGCGC 60.955 66.667 10.58 0.00 0.00 6.09
65 66 1.298413 CTCCACGTCGACCTATGCG 60.298 63.158 10.58 0.00 0.00 4.73
66 67 1.589196 GCTCCACGTCGACCTATGC 60.589 63.158 10.58 4.79 0.00 3.14
67 68 1.298413 CGCTCCACGTCGACCTATG 60.298 63.158 10.58 6.07 36.87 2.23
68 69 1.450848 TCGCTCCACGTCGACCTAT 60.451 57.895 10.58 0.00 44.19 2.57
69 70 2.046988 TCGCTCCACGTCGACCTA 60.047 61.111 10.58 0.00 44.19 3.08
70 71 3.735029 GTCGCTCCACGTCGACCT 61.735 66.667 14.56 0.00 46.50 3.85
73 74 2.046988 TAGGTCGCTCCACGTCGA 60.047 61.111 0.00 0.00 44.19 4.20
74 75 2.403987 CTAGGTCGCTCCACGTCG 59.596 66.667 0.00 0.00 44.19 5.12
75 76 2.102553 GCTAGGTCGCTCCACGTC 59.897 66.667 0.00 0.00 44.19 4.34
76 77 3.812019 CGCTAGGTCGCTCCACGT 61.812 66.667 0.00 0.00 44.19 4.49
77 78 3.812019 ACGCTAGGTCGCTCCACG 61.812 66.667 0.00 0.00 45.62 4.94
78 79 1.651240 TACACGCTAGGTCGCTCCAC 61.651 60.000 0.00 0.00 39.02 4.02
79 80 1.377594 TACACGCTAGGTCGCTCCA 60.378 57.895 0.00 0.00 39.02 3.86
80 81 1.063811 GTACACGCTAGGTCGCTCC 59.936 63.158 0.00 0.00 0.00 4.70
81 82 1.063811 GGTACACGCTAGGTCGCTC 59.936 63.158 0.00 0.00 0.00 5.03
82 83 2.413142 GGGTACACGCTAGGTCGCT 61.413 63.158 0.00 0.00 0.00 4.93
83 84 2.103736 GGGTACACGCTAGGTCGC 59.896 66.667 0.00 0.00 0.00 5.19
84 85 2.779033 GGGGGTACACGCTAGGTCG 61.779 68.421 4.65 0.00 0.00 4.79
85 86 1.380920 AGGGGGTACACGCTAGGTC 60.381 63.158 13.89 0.00 0.00 3.85
86 87 1.380920 GAGGGGGTACACGCTAGGT 60.381 63.158 15.59 0.00 33.39 3.08
87 88 0.686769 AAGAGGGGGTACACGCTAGG 60.687 60.000 15.59 0.00 33.39 3.02
88 89 1.134788 CAAAGAGGGGGTACACGCTAG 60.135 57.143 15.59 2.04 33.39 3.42
89 90 0.899720 CAAAGAGGGGGTACACGCTA 59.100 55.000 15.59 0.00 33.39 4.26
90 91 0.834687 TCAAAGAGGGGGTACACGCT 60.835 55.000 15.55 15.55 36.23 5.07
91 92 0.252197 ATCAAAGAGGGGGTACACGC 59.748 55.000 3.50 3.50 0.00 5.34
92 93 1.470979 CGATCAAAGAGGGGGTACACG 60.471 57.143 0.00 0.00 0.00 4.49
93 94 1.553704 ACGATCAAAGAGGGGGTACAC 59.446 52.381 0.00 0.00 0.00 2.90
94 95 1.946984 ACGATCAAAGAGGGGGTACA 58.053 50.000 0.00 0.00 0.00 2.90
95 96 2.737679 CGAACGATCAAAGAGGGGGTAC 60.738 54.545 0.00 0.00 0.00 3.34
96 97 1.479323 CGAACGATCAAAGAGGGGGTA 59.521 52.381 0.00 0.00 0.00 3.69
97 98 0.249398 CGAACGATCAAAGAGGGGGT 59.751 55.000 0.00 0.00 0.00 4.95
98 99 1.090052 GCGAACGATCAAAGAGGGGG 61.090 60.000 0.00 0.00 0.00 5.40
99 100 0.391130 TGCGAACGATCAAAGAGGGG 60.391 55.000 0.00 0.00 0.00 4.79
100 101 0.721718 GTGCGAACGATCAAAGAGGG 59.278 55.000 0.00 0.00 0.00 4.30
101 102 1.391485 CTGTGCGAACGATCAAAGAGG 59.609 52.381 0.00 0.00 0.00 3.69
102 103 2.061773 ACTGTGCGAACGATCAAAGAG 58.938 47.619 0.00 0.00 0.00 2.85
103 104 1.792367 CACTGTGCGAACGATCAAAGA 59.208 47.619 0.00 0.00 0.00 2.52
104 105 1.136252 CCACTGTGCGAACGATCAAAG 60.136 52.381 1.29 0.00 0.00 2.77
105 106 0.865111 CCACTGTGCGAACGATCAAA 59.135 50.000 1.29 0.00 0.00 2.69
106 107 0.948623 CCCACTGTGCGAACGATCAA 60.949 55.000 1.29 0.00 0.00 2.57
107 108 1.374125 CCCACTGTGCGAACGATCA 60.374 57.895 1.29 0.00 0.00 2.92
108 109 1.374252 ACCCACTGTGCGAACGATC 60.374 57.895 1.29 0.00 0.00 3.69
109 110 1.667830 CACCCACTGTGCGAACGAT 60.668 57.895 1.29 0.00 38.34 3.73
110 111 2.279851 CACCCACTGTGCGAACGA 60.280 61.111 1.29 0.00 38.34 3.85
111 112 3.345808 CCACCCACTGTGCGAACG 61.346 66.667 1.29 0.00 44.01 3.95
112 113 3.660111 GCCACCCACTGTGCGAAC 61.660 66.667 1.29 0.00 44.01 3.95
113 114 4.947147 GGCCACCCACTGTGCGAA 62.947 66.667 0.00 0.00 44.01 4.70
123 124 0.555769 TCCTGAAATATGGGCCACCC 59.444 55.000 9.28 0.00 45.71 4.61
124 125 2.683211 ATCCTGAAATATGGGCCACC 57.317 50.000 9.28 0.00 37.24 4.61
125 126 3.960102 TGAAATCCTGAAATATGGGCCAC 59.040 43.478 9.28 0.00 0.00 5.01
126 127 4.262891 TGAAATCCTGAAATATGGGCCA 57.737 40.909 9.61 9.61 0.00 5.36
127 128 4.590222 ACATGAAATCCTGAAATATGGGCC 59.410 41.667 0.00 0.00 0.00 5.80
128 129 5.069516 ACACATGAAATCCTGAAATATGGGC 59.930 40.000 0.00 0.00 0.00 5.36
129 130 6.097270 ACACACATGAAATCCTGAAATATGGG 59.903 38.462 0.00 0.00 0.00 4.00
130 131 7.104043 ACACACATGAAATCCTGAAATATGG 57.896 36.000 0.00 0.00 0.00 2.74
131 132 8.464404 AGAACACACATGAAATCCTGAAATATG 58.536 33.333 0.00 0.00 0.00 1.78
132 133 8.585471 AGAACACACATGAAATCCTGAAATAT 57.415 30.769 0.00 0.00 0.00 1.28
133 134 7.665145 TGAGAACACACATGAAATCCTGAAATA 59.335 33.333 0.00 0.00 0.00 1.40
134 135 6.491062 TGAGAACACACATGAAATCCTGAAAT 59.509 34.615 0.00 0.00 0.00 2.17
135 136 5.827267 TGAGAACACACATGAAATCCTGAAA 59.173 36.000 0.00 0.00 0.00 2.69
136 137 5.239306 GTGAGAACACACATGAAATCCTGAA 59.761 40.000 0.00 0.00 45.32 3.02
137 138 4.756642 GTGAGAACACACATGAAATCCTGA 59.243 41.667 0.00 0.00 45.32 3.86
138 139 5.039480 GTGAGAACACACATGAAATCCTG 57.961 43.478 0.00 0.00 45.32 3.86
151 152 0.666374 CCCAAAACCGGTGAGAACAC 59.334 55.000 8.52 0.00 45.27 3.32
152 153 0.547075 TCCCAAAACCGGTGAGAACA 59.453 50.000 8.52 0.00 0.00 3.18
153 154 1.607148 CTTCCCAAAACCGGTGAGAAC 59.393 52.381 8.52 0.00 0.00 3.01
154 155 1.477923 CCTTCCCAAAACCGGTGAGAA 60.478 52.381 8.52 6.36 0.00 2.87
155 156 0.109723 CCTTCCCAAAACCGGTGAGA 59.890 55.000 8.52 0.00 0.00 3.27
156 157 0.109723 TCCTTCCCAAAACCGGTGAG 59.890 55.000 8.52 0.01 0.00 3.51
157 158 0.179012 GTCCTTCCCAAAACCGGTGA 60.179 55.000 8.52 0.00 0.00 4.02
158 159 1.176619 GGTCCTTCCCAAAACCGGTG 61.177 60.000 8.52 0.00 0.00 4.94
159 160 1.152138 GGTCCTTCCCAAAACCGGT 59.848 57.895 0.00 0.00 0.00 5.28
160 161 0.694196 TAGGTCCTTCCCAAAACCGG 59.306 55.000 0.00 0.00 36.87 5.28
161 162 1.626825 TCTAGGTCCTTCCCAAAACCG 59.373 52.381 0.00 0.00 36.87 4.44
162 163 3.418995 GTTCTAGGTCCTTCCCAAAACC 58.581 50.000 0.00 0.00 36.75 3.27
163 164 3.074094 AGGTTCTAGGTCCTTCCCAAAAC 59.926 47.826 0.00 0.00 36.75 2.43
164 165 3.332968 AGGTTCTAGGTCCTTCCCAAAA 58.667 45.455 0.00 0.00 36.75 2.44
165 166 2.999928 AGGTTCTAGGTCCTTCCCAAA 58.000 47.619 0.00 0.00 36.75 3.28
166 167 2.735259 AGGTTCTAGGTCCTTCCCAA 57.265 50.000 0.00 0.00 36.75 4.12
167 168 2.735259 AAGGTTCTAGGTCCTTCCCA 57.265 50.000 0.00 0.00 39.52 4.37
172 173 3.562108 TCAAGGAAGGTTCTAGGTCCT 57.438 47.619 0.00 0.00 42.45 3.85
173 174 4.680975 CGATTCAAGGAAGGTTCTAGGTCC 60.681 50.000 0.00 0.00 0.00 4.46
174 175 4.434520 CGATTCAAGGAAGGTTCTAGGTC 58.565 47.826 0.00 0.00 0.00 3.85
175 176 3.197983 CCGATTCAAGGAAGGTTCTAGGT 59.802 47.826 0.00 0.00 0.00 3.08
176 177 3.432326 CCCGATTCAAGGAAGGTTCTAGG 60.432 52.174 0.00 0.00 0.00 3.02
177 178 3.451178 TCCCGATTCAAGGAAGGTTCTAG 59.549 47.826 0.00 0.00 0.00 2.43
178 179 3.446968 TCCCGATTCAAGGAAGGTTCTA 58.553 45.455 0.00 0.00 0.00 2.10
179 180 2.266279 TCCCGATTCAAGGAAGGTTCT 58.734 47.619 0.00 0.00 0.00 3.01
180 181 2.781681 TCCCGATTCAAGGAAGGTTC 57.218 50.000 0.00 0.00 0.00 3.62
181 182 3.739401 AATCCCGATTCAAGGAAGGTT 57.261 42.857 0.00 0.00 35.30 3.50
182 183 3.739401 AAATCCCGATTCAAGGAAGGT 57.261 42.857 0.00 0.00 35.30 3.50
183 184 4.273318 AGAAAATCCCGATTCAAGGAAGG 58.727 43.478 0.00 0.00 35.30 3.46
184 185 5.904362 AAGAAAATCCCGATTCAAGGAAG 57.096 39.130 0.00 0.00 35.30 3.46
185 186 6.664428 AAAAGAAAATCCCGATTCAAGGAA 57.336 33.333 0.00 0.00 35.30 3.36
186 187 6.664428 AAAAAGAAAATCCCGATTCAAGGA 57.336 33.333 0.00 0.00 36.36 3.36
321 322 9.631452 AAATTTGAAAAGAAATTTCCGCAAAAA 57.369 22.222 14.61 10.55 45.67 1.94
327 329 8.612233 TTTGCAAATTTGAAAAGAAATTTCCG 57.388 26.923 22.31 0.00 45.67 4.30
433 435 8.293157 GCATTTTTGAATTCCCGGATTTAAAAA 58.707 29.630 22.44 22.44 42.92 1.94
434 436 7.663493 AGCATTTTTGAATTCCCGGATTTAAAA 59.337 29.630 0.73 8.67 34.61 1.52
435 437 7.164803 AGCATTTTTGAATTCCCGGATTTAAA 58.835 30.769 0.73 2.08 0.00 1.52
436 438 6.706295 AGCATTTTTGAATTCCCGGATTTAA 58.294 32.000 0.73 0.00 0.00 1.52
437 439 6.071108 TGAGCATTTTTGAATTCCCGGATTTA 60.071 34.615 0.73 0.00 0.00 1.40
438 440 5.164620 AGCATTTTTGAATTCCCGGATTT 57.835 34.783 0.73 0.00 0.00 2.17
439 441 4.222588 TGAGCATTTTTGAATTCCCGGATT 59.777 37.500 0.73 0.00 0.00 3.01
440 442 3.768757 TGAGCATTTTTGAATTCCCGGAT 59.231 39.130 0.73 0.00 0.00 4.18
441 443 3.161067 TGAGCATTTTTGAATTCCCGGA 58.839 40.909 0.73 0.00 0.00 5.14
442 444 3.591196 TGAGCATTTTTGAATTCCCGG 57.409 42.857 2.27 0.00 0.00 5.73
443 445 4.746729 TGATGAGCATTTTTGAATTCCCG 58.253 39.130 2.27 0.00 0.00 5.14
444 446 7.619964 ATTTGATGAGCATTTTTGAATTCCC 57.380 32.000 2.27 0.00 0.00 3.97
456 458 9.058174 TGAACAAATTTTGAATTTGATGAGCAT 57.942 25.926 24.79 5.60 40.42 3.79
537 543 8.816144 GCTGAACAAAAATTGTATTCAAGAACA 58.184 29.630 0.00 0.00 44.59 3.18
538 544 7.998212 CGCTGAACAAAAATTGTATTCAAGAAC 59.002 33.333 0.00 0.00 44.59 3.01
653 679 9.958234 TCACGATTTCAAGACAATGAATTTTAA 57.042 25.926 0.00 0.00 38.98 1.52
654 680 9.958234 TTCACGATTTCAAGACAATGAATTTTA 57.042 25.926 0.00 0.00 38.98 1.52
657 683 7.651808 AGTTCACGATTTCAAGACAATGAATT 58.348 30.769 0.00 0.00 38.98 2.17
658 684 7.206981 AGTTCACGATTTCAAGACAATGAAT 57.793 32.000 0.00 0.00 38.98 2.57
689 715 9.703892 ACCGAATTCAAAACAAATCATGAATTA 57.296 25.926 11.32 0.00 46.74 1.40
696 722 6.333416 TGTTCACCGAATTCAAAACAAATCA 58.667 32.000 6.22 0.00 0.00 2.57
699 725 6.568869 AGATGTTCACCGAATTCAAAACAAA 58.431 32.000 6.22 0.00 31.19 2.83
702 728 7.336975 CAAAAGATGTTCACCGAATTCAAAAC 58.663 34.615 6.22 4.58 0.00 2.43
722 748 7.429636 AAAATGTTCATGGATTCAGCAAAAG 57.570 32.000 0.00 0.00 0.00 2.27
786 812 4.410400 GGGTCGAGGTGCCCCTTG 62.410 72.222 0.00 0.00 42.86 3.61
1323 1351 0.328592 GGAGGTGGGGGAGAAAAGTC 59.671 60.000 0.00 0.00 0.00 3.01
1324 1352 1.140772 GGGAGGTGGGGGAGAAAAGT 61.141 60.000 0.00 0.00 0.00 2.66
1325 1353 0.846870 AGGGAGGTGGGGGAGAAAAG 60.847 60.000 0.00 0.00 0.00 2.27
1326 1354 0.845102 GAGGGAGGTGGGGGAGAAAA 60.845 60.000 0.00 0.00 0.00 2.29
1327 1355 1.229853 GAGGGAGGTGGGGGAGAAA 60.230 63.158 0.00 0.00 0.00 2.52
1363 1391 2.365768 GAGGAGGAGGTGGGGGTC 60.366 72.222 0.00 0.00 0.00 4.46
1435 1463 4.066139 AGGTTCCATGGCTGCCCC 62.066 66.667 17.53 8.82 0.00 5.80
1527 1736 1.153667 GTTGGGAGCGCAGAGAGAG 60.154 63.158 11.47 0.00 0.00 3.20
1603 1812 4.121669 GCGTGGAGAGCAGCGAGA 62.122 66.667 0.00 0.00 34.19 4.04
1857 2066 1.346365 CACGACATTGTAGGTGACGG 58.654 55.000 12.71 0.00 38.65 4.79
1996 2205 1.033202 TATAGAGTGCACCACGCCGA 61.033 55.000 14.63 0.00 41.33 5.54
2037 2246 2.768492 CCAGCAGCCCTCATTTCGC 61.768 63.158 0.00 0.00 0.00 4.70
2068 2277 3.126858 GCAGCGAATTGAATGTGACCTTA 59.873 43.478 0.00 0.00 0.00 2.69
2258 2467 2.413310 TCCGGCTGAATTCCCTTAAC 57.587 50.000 2.27 0.00 0.00 2.01
2369 2578 3.004734 GTGCACAAGTTTGGCTTACATCT 59.995 43.478 13.17 0.00 35.27 2.90
2619 2828 3.735237 AGCCACACCGACTATATGAAG 57.265 47.619 0.00 0.00 0.00 3.02
2926 3135 4.202111 ACTTTGCTGTTGACCAATACCAAC 60.202 41.667 0.00 0.00 42.04 3.77
3121 3330 6.264841 TGCATCAAACTATTGTATGTTGCA 57.735 33.333 6.33 6.33 37.79 4.08
3136 3345 9.154847 CCTAATCGAGAATACATATGCATCAAA 57.845 33.333 0.19 0.00 0.00 2.69
3193 3402 1.901538 CACCACTCGACTTGATCTCG 58.098 55.000 0.00 0.00 0.00 4.04
3205 3414 3.296709 ATCCGGACGTGCACCACTC 62.297 63.158 6.12 3.22 31.34 3.51
3648 3857 8.189119 TGTTTGCCAAGGATAACTAAGAAAAT 57.811 30.769 0.00 0.00 0.00 1.82
3698 3907 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
3699 3908 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
3700 3909 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
3701 3910 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
3702 3911 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
3703 3912 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
3704 3913 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
3705 3914 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
3706 3915 5.699097 TTAAGACAAGAATTTTGGGACGG 57.301 39.130 0.00 0.00 0.00 4.79
3707 3916 8.587952 AAATTTAAGACAAGAATTTTGGGACG 57.412 30.769 0.00 0.00 31.00 4.79
3708 3917 9.764363 AGAAATTTAAGACAAGAATTTTGGGAC 57.236 29.630 0.00 0.00 34.22 4.46
3709 3918 9.981114 GAGAAATTTAAGACAAGAATTTTGGGA 57.019 29.630 0.00 0.00 34.22 4.37
3710 3919 9.987272 AGAGAAATTTAAGACAAGAATTTTGGG 57.013 29.630 0.00 0.00 34.22 4.12
3721 3930 9.967346 CATCCGTATCTAGAGAAATTTAAGACA 57.033 33.333 0.00 0.00 0.00 3.41
3722 3931 9.968870 ACATCCGTATCTAGAGAAATTTAAGAC 57.031 33.333 0.00 0.00 0.00 3.01
3739 3948 8.408601 ACGTTTTAGTGTTAGATACATCCGTAT 58.591 33.333 0.00 0.00 41.16 3.06
3740 3949 7.697710 CACGTTTTAGTGTTAGATACATCCGTA 59.302 37.037 0.00 0.00 39.39 4.02
3741 3950 6.529125 CACGTTTTAGTGTTAGATACATCCGT 59.471 38.462 0.00 0.00 39.39 4.69
3742 3951 6.748658 TCACGTTTTAGTGTTAGATACATCCG 59.251 38.462 0.00 0.00 42.40 4.18
3743 3952 8.470040 TTCACGTTTTAGTGTTAGATACATCC 57.530 34.615 0.00 0.00 42.40 3.51
3753 3962 9.095065 GGATGTATCTATTCACGTTTTAGTGTT 57.905 33.333 0.00 0.00 42.40 3.32
3754 3963 8.255206 TGGATGTATCTATTCACGTTTTAGTGT 58.745 33.333 0.00 0.00 42.40 3.55
3755 3964 8.642908 TGGATGTATCTATTCACGTTTTAGTG 57.357 34.615 0.00 0.00 43.11 2.74
3759 3968 9.778741 ACATATGGATGTATCTATTCACGTTTT 57.221 29.630 7.80 0.00 44.77 2.43
3762 3971 9.462606 TCTACATATGGATGTATCTATTCACGT 57.537 33.333 7.80 0.00 45.42 4.49
3763 3972 9.723447 GTCTACATATGGATGTATCTATTCACG 57.277 37.037 7.80 0.00 45.42 4.35
3775 3984 9.987272 TGTCTTAGATTTGTCTACATATGGATG 57.013 33.333 7.80 0.00 39.16 3.51
3786 3995 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
3787 3996 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
3788 3997 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
3789 3998 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
3790 3999 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
3791 4000 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
3792 4001 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
3793 4002 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
3794 4003 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
3795 4004 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
3796 4005 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
3797 4006 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
3798 4007 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
3799 4008 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
3800 4009 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
3801 4010 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
3802 4011 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
3803 4012 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
3804 4013 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
3805 4014 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3806 4015 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3807 4016 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
3808 4017 2.292389 TGTAATACTCCCTCCGTCCCAA 60.292 50.000 0.00 0.00 0.00 4.12
3809 4018 1.288633 TGTAATACTCCCTCCGTCCCA 59.711 52.381 0.00 0.00 0.00 4.37
3810 4019 2.077687 TGTAATACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
3811 4020 4.344390 AGAAATGTAATACTCCCTCCGTCC 59.656 45.833 0.00 0.00 0.00 4.79
3812 4021 5.302313 AGAGAAATGTAATACTCCCTCCGTC 59.698 44.000 0.00 0.00 32.71 4.79
3813 4022 5.209659 AGAGAAATGTAATACTCCCTCCGT 58.790 41.667 0.00 0.00 32.71 4.69
3814 4023 5.793030 AGAGAAATGTAATACTCCCTCCG 57.207 43.478 0.00 0.00 32.71 4.63
3815 4024 8.925338 TCTTTAGAGAAATGTAATACTCCCTCC 58.075 37.037 0.00 0.00 32.71 4.30
3985 4194 8.660295 AATAATTAGTATGACCTCACCGGATA 57.340 34.615 9.46 0.00 36.31 2.59
4158 4368 3.118738 AGCCCACAACCGACTCTAAATAG 60.119 47.826 0.00 0.00 0.00 1.73
4208 4418 3.834732 GGTAGGCCCATATACAGCG 57.165 57.895 0.00 0.00 0.00 5.18
4222 4432 0.033796 TCACCACCGAGTAGGGGTAG 60.034 60.000 2.85 0.14 43.78 3.18
4223 4433 0.033796 CTCACCACCGAGTAGGGGTA 60.034 60.000 2.85 0.00 43.78 3.69
4224 4434 1.305046 CTCACCACCGAGTAGGGGT 60.305 63.158 0.00 0.00 43.78 4.95
4225 4435 1.305046 ACTCACCACCGAGTAGGGG 60.305 63.158 0.00 0.00 44.46 4.79
4226 4436 1.654954 CGACTCACCACCGAGTAGGG 61.655 65.000 0.00 0.00 46.26 3.53
4227 4437 0.959372 ACGACTCACCACCGAGTAGG 60.959 60.000 6.23 0.00 46.26 3.18
4268 4478 2.507058 ACATGCACCTGACACATAGGAT 59.493 45.455 0.00 0.00 38.71 3.24
4269 4479 1.908619 ACATGCACCTGACACATAGGA 59.091 47.619 0.00 0.00 38.71 2.94
4423 4633 1.453762 GCAGAATCAGCTCCCCATGC 61.454 60.000 0.00 0.00 0.00 4.06
4455 4665 3.256879 AGAGAAGACTGATGCGAAAGACA 59.743 43.478 0.00 0.00 0.00 3.41
4468 4678 2.562298 CAGCTGAAGACCAGAGAAGACT 59.438 50.000 8.42 0.00 45.78 3.24
4487 4698 2.282462 GTCAACACCCCTGCCCAG 60.282 66.667 0.00 0.00 0.00 4.45
4551 4762 3.446442 AATCAAACCCTCAGATGCAGT 57.554 42.857 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.