Multiple sequence alignment - TraesCS2B01G211400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G211400 chr2B 100.000 2918 0 0 1 2918 194998850 194995933 0.000000e+00 5389.0
1 TraesCS2B01G211400 chr2B 83.559 517 57 18 662 1158 194955124 194954616 2.650000e-125 459.0
2 TraesCS2B01G211400 chr2B 80.796 578 80 18 1483 2046 194954262 194953702 9.670000e-115 424.0
3 TraesCS2B01G211400 chr2B 83.438 477 54 15 700 1157 195368636 195368166 1.250000e-113 420.0
4 TraesCS2B01G211400 chr2B 85.606 396 36 11 1511 1900 195059435 195059055 2.110000e-106 396.0
5 TraesCS2B01G211400 chr2B 85.340 382 38 10 1511 1877 195167205 195166827 2.120000e-101 379.0
6 TraesCS2B01G211400 chr2B 85.171 263 29 7 1155 1408 194954546 194954285 8.020000e-66 261.0
7 TraesCS2B01G211400 chr2B 80.263 228 26 9 1191 1407 195368060 195367841 1.400000e-33 154.0
8 TraesCS2B01G211400 chr2B 83.951 162 16 8 2511 2664 194953225 194953066 2.340000e-31 147.0
9 TraesCS2B01G211400 chr2B 80.628 191 21 8 820 1009 195170341 195170166 1.820000e-27 134.0
10 TraesCS2B01G211400 chr2B 86.842 76 7 2 512 585 195168457 195168383 6.700000e-12 82.4
11 TraesCS2B01G211400 chr3B 93.704 540 29 4 1198 1735 462061472 462060936 0.000000e+00 804.0
12 TraesCS2B01G211400 chr2A 93.621 533 27 3 2386 2918 165008610 165009135 0.000000e+00 789.0
13 TraesCS2B01G211400 chr2A 83.550 614 80 14 1451 2046 165105062 165105672 3.290000e-154 555.0
14 TraesCS2B01G211400 chr2A 85.754 358 35 13 811 1158 165006599 165006950 5.940000e-97 364.0
15 TraesCS2B01G211400 chr2A 81.405 484 52 24 662 1128 164981161 164981623 7.690000e-96 361.0
16 TraesCS2B01G211400 chr2A 84.733 262 30 5 1155 1408 165104804 165105063 1.340000e-63 254.0
17 TraesCS2B01G211400 chr2A 78.571 406 53 19 762 1158 164997651 164998031 1.350000e-58 237.0
18 TraesCS2B01G211400 chr2A 86.082 194 23 3 1216 1408 165007053 165007243 3.810000e-49 206.0
19 TraesCS2B01G211400 chr2A 90.511 137 10 3 2038 2173 165105700 165105834 8.310000e-41 178.0
20 TraesCS2B01G211400 chr2A 85.185 162 11 8 2230 2383 165008302 165008458 1.400000e-33 154.0
21 TraesCS2B01G211400 chr2A 84.277 159 18 6 2511 2664 165106101 165106257 6.520000e-32 148.0
22 TraesCS2B01G211400 chr2A 77.957 186 27 7 1191 1365 164867515 164867697 1.430000e-18 104.0
23 TraesCS2B01G211400 chr2A 96.875 32 1 0 820 851 164875591 164875622 1.000000e-03 54.7
24 TraesCS2B01G211400 chr1B 85.714 525 64 6 1451 1966 512052400 512052922 7.110000e-151 544.0
25 TraesCS2B01G211400 chr1B 84.733 262 30 5 1155 1408 512052142 512052401 1.340000e-63 254.0
26 TraesCS2B01G211400 chr1B 91.241 137 9 3 2038 2173 512053038 512053172 1.790000e-42 183.0
27 TraesCS2B01G211400 chr1B 84.906 159 17 6 2511 2664 512053439 512053595 1.400000e-33 154.0
28 TraesCS2B01G211400 chr2D 87.633 469 37 14 2233 2698 136516309 136515859 2.580000e-145 525.0
29 TraesCS2B01G211400 chr2D 82.683 589 74 13 1483 2046 136514917 136514332 5.620000e-137 497.0
30 TraesCS2B01G211400 chr2D 84.753 446 43 11 699 1130 136651680 136651246 9.670000e-115 424.0
31 TraesCS2B01G211400 chr2D 85.961 406 43 9 1511 1905 136612184 136611782 3.480000e-114 422.0
32 TraesCS2B01G211400 chr2D 85.859 396 35 10 1511 1900 136607753 136607373 4.530000e-108 401.0
33 TraesCS2B01G211400 chr2D 81.871 513 46 30 662 1158 136634694 136634213 3.530000e-104 388.0
34 TraesCS2B01G211400 chr2D 83.019 265 30 10 1155 1408 136515200 136514940 2.930000e-55 226.0
35 TraesCS2B01G211400 chr2D 90.769 130 7 2 2065 2194 136611605 136611481 5.000000e-38 169.0
36 TraesCS2B01G211400 chr2D 84.516 155 16 5 1214 1365 136651084 136650935 2.340000e-31 147.0
37 TraesCS2B01G211400 chr2D 94.286 70 4 0 2125 2194 136607129 136607060 1.110000e-19 108.0
38 TraesCS2B01G211400 chrUn 91.566 83 3 4 2511 2590 477030847 477030766 8.550000e-21 111.0
39 TraesCS2B01G211400 chr4B 86.667 75 5 5 175 248 573072039 573072109 8.670000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G211400 chr2B 194995933 194998850 2917 True 5389.00 5389 100.00000 1 2918 1 chr2B.!!$R1 2917
1 TraesCS2B01G211400 chr2B 194953066 194955124 2058 True 322.75 459 83.36925 662 2664 4 chr2B.!!$R3 2002
2 TraesCS2B01G211400 chr2B 195367841 195368636 795 True 287.00 420 81.85050 700 1407 2 chr2B.!!$R5 707
3 TraesCS2B01G211400 chr3B 462060936 462061472 536 True 804.00 804 93.70400 1198 1735 1 chr3B.!!$R1 537
4 TraesCS2B01G211400 chr2A 165006599 165009135 2536 False 378.25 789 87.66050 811 2918 4 chr2A.!!$F5 2107
5 TraesCS2B01G211400 chr2A 165104804 165106257 1453 False 283.75 555 85.76775 1155 2664 4 chr2A.!!$F6 1509
6 TraesCS2B01G211400 chr1B 512052142 512053595 1453 False 283.75 544 86.64850 1155 2664 4 chr1B.!!$F1 1509
7 TraesCS2B01G211400 chr2D 136514332 136516309 1977 True 416.00 525 84.44500 1155 2698 3 chr2D.!!$R2 1543
8 TraesCS2B01G211400 chr2D 136650935 136651680 745 True 285.50 424 84.63450 699 1365 2 chr2D.!!$R4 666
9 TraesCS2B01G211400 chr2D 136607060 136612184 5124 True 275.00 422 89.21875 1511 2194 4 chr2D.!!$R3 683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
639 640 0.036765 TACCACCACCATTCGTGAGC 60.037 55.0 0.0 0.0 46.2 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2358 5700 0.033306 TGCCCATGCAATTAGGCAGA 60.033 50.0 15.8 0.0 45.54 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 9.702726 GAAATTCCAAAGTAGTTTTTGAAAAGC 57.297 29.630 8.20 0.00 39.79 3.51
38 39 8.785329 AATTCCAAAGTAGTTTTTGAAAAGCA 57.215 26.923 7.24 0.00 39.79 3.91
41 42 5.802956 CCAAAGTAGTTTTTGAAAAGCACGA 59.197 36.000 7.24 0.00 39.79 4.35
42 43 6.309251 CCAAAGTAGTTTTTGAAAAGCACGAA 59.691 34.615 7.24 0.00 39.79 3.85
43 44 7.010091 CCAAAGTAGTTTTTGAAAAGCACGAAT 59.990 33.333 7.24 0.00 39.79 3.34
46 47 9.575783 AAGTAGTTTTTGAAAAGCACGAATAAA 57.424 25.926 7.24 0.00 0.00 1.40
47 48 9.575783 AGTAGTTTTTGAAAAGCACGAATAAAA 57.424 25.926 7.24 0.00 0.00 1.52
52 53 9.495754 TTTTTGAAAAGCACGAATAAAATTTGG 57.504 25.926 0.00 0.00 0.00 3.28
53 54 8.425577 TTTGAAAAGCACGAATAAAATTTGGA 57.574 26.923 0.00 0.00 0.00 3.53
54 55 8.425577 TTGAAAAGCACGAATAAAATTTGGAA 57.574 26.923 0.00 0.00 0.00 3.53
59 60 9.921637 AAAGCACGAATAAAATTTGGAATTCTA 57.078 25.926 5.23 0.00 0.00 2.10
60 61 9.921637 AAGCACGAATAAAATTTGGAATTCTAA 57.078 25.926 5.23 2.23 0.00 2.10
62 63 8.321005 GCACGAATAAAATTTGGAATTCTAAGC 58.679 33.333 5.23 12.12 0.00 3.09
63 64 9.352784 CACGAATAAAATTTGGAATTCTAAGCA 57.647 29.630 5.23 0.00 0.00 3.91
74 75 9.829507 TTTGGAATTCTAAGCATTTTTCTGAAA 57.170 25.926 5.23 0.00 0.00 2.69
174 175 8.443953 AAATTGAACAAATTTTGAAATCCCGA 57.556 26.923 15.81 2.06 44.41 5.14
175 176 8.443953 AATTGAACAAATTTTGAAATCCCGAA 57.556 26.923 15.81 3.26 34.72 4.30
180 181 7.420184 ACAAATTTTGAAATCCCGAATGTTC 57.580 32.000 15.81 0.00 0.00 3.18
181 182 7.216494 ACAAATTTTGAAATCCCGAATGTTCT 58.784 30.769 15.81 0.00 0.00 3.01
182 183 7.714813 ACAAATTTTGAAATCCCGAATGTTCTT 59.285 29.630 15.81 0.00 0.00 2.52
183 184 7.889589 AATTTTGAAATCCCGAATGTTCTTC 57.110 32.000 0.00 0.00 0.00 2.87
185 186 6.398234 TTTGAAATCCCGAATGTTCTTCAA 57.602 33.333 4.14 4.14 29.88 2.69
188 189 6.446318 TGAAATCCCGAATGTTCTTCAAAAG 58.554 36.000 0.00 0.00 0.00 2.27
189 190 3.915437 TCCCGAATGTTCTTCAAAAGC 57.085 42.857 0.00 0.00 0.00 3.51
190 191 3.218453 TCCCGAATGTTCTTCAAAAGCA 58.782 40.909 0.00 0.00 0.00 3.91
192 193 3.922240 CCCGAATGTTCTTCAAAAGCATG 59.078 43.478 0.00 0.00 0.00 4.06
196 197 7.028962 CCGAATGTTCTTCAAAAGCATGAATA 58.971 34.615 0.00 0.00 38.55 1.75
223 224 7.834068 TTTTGACATTCCGAACAATTTTTGA 57.166 28.000 0.00 0.00 0.00 2.69
225 226 7.834068 TTGACATTCCGAACAATTTTTGAAA 57.166 28.000 0.00 0.00 0.00 2.69
226 227 7.834068 TGACATTCCGAACAATTTTTGAAAA 57.166 28.000 0.00 0.00 0.00 2.29
229 230 8.034058 ACATTCCGAACAATTTTTGAAAAACA 57.966 26.923 5.08 0.00 0.00 2.83
230 231 8.672815 ACATTCCGAACAATTTTTGAAAAACAT 58.327 25.926 5.08 0.00 0.00 2.71
232 233 7.834068 TCCGAACAATTTTTGAAAAACATGA 57.166 28.000 18.88 3.89 0.00 3.07
234 235 9.534565 TCCGAACAATTTTTGAAAAACATGATA 57.465 25.926 18.88 0.00 0.00 2.15
339 340 3.791973 AAAACACGCTCATTGTTTGGA 57.208 38.095 2.30 0.00 44.56 3.53
341 342 4.320608 AAACACGCTCATTGTTTGGAAT 57.679 36.364 0.79 0.00 43.84 3.01
344 345 4.692228 ACACGCTCATTGTTTGGAATTTT 58.308 34.783 0.00 0.00 0.00 1.82
345 346 4.507388 ACACGCTCATTGTTTGGAATTTTG 59.493 37.500 0.00 0.00 0.00 2.44
347 348 5.233902 CACGCTCATTGTTTGGAATTTTGAA 59.766 36.000 0.00 0.00 0.00 2.69
349 350 7.116090 CACGCTCATTGTTTGGAATTTTGAATA 59.884 33.333 0.00 0.00 0.00 1.75
350 351 7.818930 ACGCTCATTGTTTGGAATTTTGAATAT 59.181 29.630 0.00 0.00 0.00 1.28
351 352 8.658609 CGCTCATTGTTTGGAATTTTGAATATT 58.341 29.630 0.00 0.00 0.00 1.28
387 388 9.007901 ACAAATTGTTTTGGAAAATGAACAGAA 57.992 25.926 0.00 0.00 45.34 3.02
388 389 9.837525 CAAATTGTTTTGGAAAATGAACAGAAA 57.162 25.926 0.00 0.00 38.85 2.52
426 427 5.521544 CCGGAAAATCGGTAAAAGAAACAA 58.478 37.500 0.00 0.00 44.60 2.83
427 428 5.978322 CCGGAAAATCGGTAAAAGAAACAAA 59.022 36.000 0.00 0.00 44.60 2.83
430 431 7.842239 CGGAAAATCGGTAAAAGAAACAAAAAC 59.158 33.333 0.00 0.00 0.00 2.43
431 432 8.117988 GGAAAATCGGTAAAAGAAACAAAAACC 58.882 33.333 0.00 0.00 0.00 3.27
432 433 7.542534 AAATCGGTAAAAGAAACAAAAACCC 57.457 32.000 0.00 0.00 0.00 4.11
433 434 4.670347 TCGGTAAAAGAAACAAAAACCCG 58.330 39.130 0.00 0.00 0.00 5.28
434 435 3.797796 CGGTAAAAGAAACAAAAACCCGG 59.202 43.478 0.00 0.00 0.00 5.73
437 438 5.291614 GGTAAAAGAAACAAAAACCCGGTTC 59.708 40.000 2.46 0.00 0.00 3.62
438 439 4.538746 AAAGAAACAAAAACCCGGTTCA 57.461 36.364 2.46 0.00 0.00 3.18
441 442 2.971660 AACAAAAACCCGGTTCAAGG 57.028 45.000 2.46 0.00 0.00 3.61
442 443 1.855295 ACAAAAACCCGGTTCAAGGT 58.145 45.000 2.46 0.00 38.27 3.50
444 445 2.166870 ACAAAAACCCGGTTCAAGGTTC 59.833 45.455 2.46 0.00 45.68 3.62
446 447 0.468585 AAACCCGGTTCAAGGTTCCC 60.469 55.000 2.46 0.00 45.68 3.97
447 448 1.647334 AACCCGGTTCAAGGTTCCCA 61.647 55.000 0.00 0.00 42.85 4.37
449 450 0.468400 CCCGGTTCAAGGTTCCCAAA 60.468 55.000 0.00 0.00 0.00 3.28
452 453 1.067974 CGGTTCAAGGTTCCCAAAACC 59.932 52.381 0.00 0.00 40.58 3.27
453 454 1.067974 GGTTCAAGGTTCCCAAAACCG 59.932 52.381 1.52 0.00 44.82 4.44
454 455 1.067974 GTTCAAGGTTCCCAAAACCGG 59.932 52.381 0.00 0.00 44.82 5.28
455 456 1.110518 TCAAGGTTCCCAAAACCGGC 61.111 55.000 0.00 0.00 44.82 6.13
457 458 0.826256 AAGGTTCCCAAAACCGGCTC 60.826 55.000 0.00 0.00 44.82 4.70
460 461 1.901464 TTCCCAAAACCGGCTCTGC 60.901 57.895 0.00 0.00 0.00 4.26
461 462 3.373565 CCCAAAACCGGCTCTGCC 61.374 66.667 0.00 0.00 46.75 4.85
472 473 3.006756 GCTCTGCCTCGCTGTGGTA 62.007 63.158 0.00 0.00 0.00 3.25
473 474 1.591703 CTCTGCCTCGCTGTGGTAA 59.408 57.895 0.00 0.00 0.00 2.85
474 475 0.459237 CTCTGCCTCGCTGTGGTAAG 60.459 60.000 0.00 0.00 0.00 2.34
475 476 1.448540 CTGCCTCGCTGTGGTAAGG 60.449 63.158 0.00 0.00 0.00 2.69
476 477 2.172483 CTGCCTCGCTGTGGTAAGGT 62.172 60.000 0.00 0.00 0.00 3.50
477 478 1.741770 GCCTCGCTGTGGTAAGGTG 60.742 63.158 0.00 0.00 0.00 4.00
478 479 1.079127 CCTCGCTGTGGTAAGGTGG 60.079 63.158 0.00 0.00 0.00 4.61
479 480 1.541310 CCTCGCTGTGGTAAGGTGGA 61.541 60.000 0.00 0.00 0.00 4.02
483 484 1.295423 CTGTGGTAAGGTGGACCGG 59.705 63.158 0.00 0.00 40.09 5.28
484 485 1.152290 TGTGGTAAGGTGGACCGGA 60.152 57.895 9.46 0.00 40.09 5.14
485 486 1.294459 GTGGTAAGGTGGACCGGAC 59.706 63.158 9.46 0.00 40.09 4.79
486 487 1.914764 TGGTAAGGTGGACCGGACC 60.915 63.158 16.69 16.69 42.50 4.46
487 488 1.914764 GGTAAGGTGGACCGGACCA 60.915 63.158 22.26 22.26 42.06 4.02
488 489 1.482748 GGTAAGGTGGACCGGACCAA 61.483 60.000 27.38 9.19 42.06 3.67
489 490 0.397564 GTAAGGTGGACCGGACCAAA 59.602 55.000 27.38 10.50 41.87 3.28
492 493 0.840722 AGGTGGACCGGACCAAATCT 60.841 55.000 27.38 20.19 41.87 2.40
493 494 0.392595 GGTGGACCGGACCAAATCTC 60.393 60.000 27.38 14.08 41.87 2.75
494 495 0.739813 GTGGACCGGACCAAATCTCG 60.740 60.000 27.38 0.00 41.87 4.04
496 497 2.125673 ACCGGACCAAATCTCGCG 60.126 61.111 9.46 0.00 0.00 5.87
497 498 3.564027 CCGGACCAAATCTCGCGC 61.564 66.667 0.00 0.00 0.00 6.86
499 500 3.564027 GGACCAAATCTCGCGCGG 61.564 66.667 31.69 20.60 0.00 6.46
503 504 1.226018 CCAAATCTCGCGCGGTTTC 60.226 57.895 31.69 0.00 0.00 2.78
506 507 1.908066 AAATCTCGCGCGGTTTCACC 61.908 55.000 31.69 0.00 34.05 4.02
509 510 3.636313 CTCGCGCGGTTTCACCCTA 62.636 63.158 31.69 4.97 33.75 3.53
510 511 2.510691 CGCGCGGTTTCACCCTAT 60.511 61.111 24.84 0.00 33.75 2.57
512 513 1.448893 GCGCGGTTTCACCCTATGA 60.449 57.895 8.83 0.00 33.75 2.15
514 515 1.539496 GCGCGGTTTCACCCTATGATA 60.539 52.381 8.83 0.00 37.11 2.15
516 517 3.399330 CGCGGTTTCACCCTATGATATT 58.601 45.455 0.00 0.00 37.11 1.28
517 518 3.432252 CGCGGTTTCACCCTATGATATTC 59.568 47.826 0.00 0.00 37.11 1.75
519 520 4.691216 GCGGTTTCACCCTATGATATTCTC 59.309 45.833 0.00 0.00 37.11 2.87
522 523 6.647067 CGGTTTCACCCTATGATATTCTCTTC 59.353 42.308 0.00 0.00 37.11 2.87
523 524 6.937465 GGTTTCACCCTATGATATTCTCTTCC 59.063 42.308 0.00 0.00 37.11 3.46
528 529 5.246429 ACCCTATGATATTCTCTTCCGTTCC 59.754 44.000 0.00 0.00 0.00 3.62
530 531 6.663953 CCCTATGATATTCTCTTCCGTTCCTA 59.336 42.308 0.00 0.00 0.00 2.94
532 533 8.410141 CCTATGATATTCTCTTCCGTTCCTATC 58.590 40.741 0.00 0.00 0.00 2.08
533 534 6.255596 TGATATTCTCTTCCGTTCCTATCG 57.744 41.667 0.00 0.00 0.00 2.92
535 536 4.571372 ATTCTCTTCCGTTCCTATCGTC 57.429 45.455 0.00 0.00 0.00 4.20
536 537 3.278668 TCTCTTCCGTTCCTATCGTCT 57.721 47.619 0.00 0.00 0.00 4.18
537 538 2.943690 TCTCTTCCGTTCCTATCGTCTG 59.056 50.000 0.00 0.00 0.00 3.51
540 541 3.128242 TCTTCCGTTCCTATCGTCTGTTC 59.872 47.826 0.00 0.00 0.00 3.18
542 543 2.821378 TCCGTTCCTATCGTCTGTTCAA 59.179 45.455 0.00 0.00 0.00 2.69
543 544 3.256383 TCCGTTCCTATCGTCTGTTCAAA 59.744 43.478 0.00 0.00 0.00 2.69
544 545 3.367025 CCGTTCCTATCGTCTGTTCAAAC 59.633 47.826 0.00 0.00 0.00 2.93
545 546 3.367025 CGTTCCTATCGTCTGTTCAAACC 59.633 47.826 0.00 0.00 0.00 3.27
546 547 4.312443 GTTCCTATCGTCTGTTCAAACCA 58.688 43.478 0.00 0.00 0.00 3.67
547 548 4.819105 TCCTATCGTCTGTTCAAACCAT 57.181 40.909 0.00 0.00 0.00 3.55
549 550 5.556915 TCCTATCGTCTGTTCAAACCATTT 58.443 37.500 0.00 0.00 0.00 2.32
550 551 5.642063 TCCTATCGTCTGTTCAAACCATTTC 59.358 40.000 0.00 0.00 0.00 2.17
551 552 5.411361 CCTATCGTCTGTTCAAACCATTTCA 59.589 40.000 0.00 0.00 0.00 2.69
552 553 5.766150 ATCGTCTGTTCAAACCATTTCAA 57.234 34.783 0.00 0.00 0.00 2.69
553 554 5.568685 TCGTCTGTTCAAACCATTTCAAA 57.431 34.783 0.00 0.00 0.00 2.69
554 555 5.577835 TCGTCTGTTCAAACCATTTCAAAG 58.422 37.500 0.00 0.00 0.00 2.77
556 557 6.316640 TCGTCTGTTCAAACCATTTCAAAGTA 59.683 34.615 0.00 0.00 0.00 2.24
560 561 7.122055 TCTGTTCAAACCATTTCAAAGTAGTGT 59.878 33.333 0.00 0.00 0.00 3.55
561 562 7.254852 TGTTCAAACCATTTCAAAGTAGTGTC 58.745 34.615 0.00 0.00 0.00 3.67
562 563 7.094162 TGTTCAAACCATTTCAAAGTAGTGTCA 60.094 33.333 0.00 0.00 0.00 3.58
564 565 6.601613 TCAAACCATTTCAAAGTAGTGTCAGT 59.398 34.615 0.00 0.00 0.00 3.41
565 566 7.122055 TCAAACCATTTCAAAGTAGTGTCAGTT 59.878 33.333 0.00 0.00 0.00 3.16
568 569 6.136071 CCATTTCAAAGTAGTGTCAGTTTCG 58.864 40.000 0.00 0.00 0.00 3.46
570 571 5.712217 TTCAAAGTAGTGTCAGTTTCGTG 57.288 39.130 0.00 0.00 0.00 4.35
571 572 4.116961 TCAAAGTAGTGTCAGTTTCGTGG 58.883 43.478 0.00 0.00 0.00 4.94
574 575 1.525619 GTAGTGTCAGTTTCGTGGTGC 59.474 52.381 0.00 0.00 0.00 5.01
575 576 1.151777 AGTGTCAGTTTCGTGGTGCG 61.152 55.000 0.00 0.00 43.01 5.34
576 577 1.153529 TGTCAGTTTCGTGGTGCGT 60.154 52.632 0.00 0.00 42.13 5.24
577 578 0.741574 TGTCAGTTTCGTGGTGCGTT 60.742 50.000 0.00 0.00 42.13 4.84
578 579 1.210870 GTCAGTTTCGTGGTGCGTTA 58.789 50.000 0.00 0.00 42.13 3.18
581 582 2.285756 TCAGTTTCGTGGTGCGTTAAAG 59.714 45.455 0.00 0.00 42.13 1.85
584 585 1.937278 TTCGTGGTGCGTTAAAGTGA 58.063 45.000 0.00 0.00 42.13 3.41
585 586 1.493772 TCGTGGTGCGTTAAAGTGAG 58.506 50.000 0.00 0.00 42.13 3.51
587 588 0.237498 GTGGTGCGTTAAAGTGAGGC 59.763 55.000 0.00 0.00 0.00 4.70
588 589 1.225376 TGGTGCGTTAAAGTGAGGCG 61.225 55.000 0.00 0.00 0.00 5.52
591 592 2.264813 GTGCGTTAAAGTGAGGCGATA 58.735 47.619 0.00 0.00 0.00 2.92
592 593 2.281762 GTGCGTTAAAGTGAGGCGATAG 59.718 50.000 0.00 0.00 0.00 2.08
614 615 3.310774 GCGTCATGCTGTATCAGTTCATT 59.689 43.478 0.00 0.00 41.73 2.57
616 617 5.260900 CGTCATGCTGTATCAGTTCATTTG 58.739 41.667 0.00 0.00 33.43 2.32
619 620 5.355071 TCATGCTGTATCAGTTCATTTGGAC 59.645 40.000 0.00 0.00 33.43 4.02
620 621 4.910195 TGCTGTATCAGTTCATTTGGACT 58.090 39.130 0.00 0.00 33.43 3.85
621 622 6.048732 TGCTGTATCAGTTCATTTGGACTA 57.951 37.500 0.00 0.00 33.43 2.59
623 624 5.294552 GCTGTATCAGTTCATTTGGACTACC 59.705 44.000 0.00 0.00 33.43 3.18
624 625 6.367374 TGTATCAGTTCATTTGGACTACCA 57.633 37.500 0.00 0.00 45.34 3.25
625 626 6.170506 TGTATCAGTTCATTTGGACTACCAC 58.829 40.000 0.00 0.00 46.80 4.16
626 627 4.015872 TCAGTTCATTTGGACTACCACC 57.984 45.455 0.00 0.00 46.80 4.61
628 629 3.502211 CAGTTCATTTGGACTACCACCAC 59.498 47.826 0.00 0.00 46.80 4.16
631 632 2.647299 TCATTTGGACTACCACCACCAT 59.353 45.455 0.00 0.00 46.80 3.55
633 634 2.871096 TTGGACTACCACCACCATTC 57.129 50.000 0.00 0.00 46.80 2.67
635 636 0.611714 GGACTACCACCACCATTCGT 59.388 55.000 0.00 0.00 35.97 3.85
636 637 1.674817 GGACTACCACCACCATTCGTG 60.675 57.143 0.00 0.00 37.94 4.35
637 638 1.274167 GACTACCACCACCATTCGTGA 59.726 52.381 0.00 0.00 46.20 4.35
638 639 1.275291 ACTACCACCACCATTCGTGAG 59.725 52.381 0.00 0.00 46.20 3.51
639 640 0.036765 TACCACCACCATTCGTGAGC 60.037 55.000 0.00 0.00 46.20 4.26
640 641 1.302431 CCACCACCATTCGTGAGCA 60.302 57.895 0.00 0.00 46.20 4.26
644 645 0.518636 CCACCATTCGTGAGCAAGTG 59.481 55.000 0.00 0.00 46.20 3.16
646 647 3.685163 CACCATTCGTGAGCAAGTGCG 62.685 57.143 0.00 0.00 46.20 5.34
657 658 1.349627 CAAGTGCGGATCGTCATGC 59.650 57.895 0.00 0.00 0.00 4.06
658 659 2.167219 AAGTGCGGATCGTCATGCG 61.167 57.895 3.55 3.55 46.08 4.73
748 751 5.947228 TTGAGCTCGAAATGAAGAAACAT 57.053 34.783 9.64 0.00 0.00 2.71
800 803 0.169672 CCAGACTGAAAATGCAGCCG 59.830 55.000 3.32 0.00 39.51 5.52
855 864 3.345808 CCAAGCCACGACCGTGTG 61.346 66.667 19.34 11.89 44.02 3.82
865 874 1.681327 GACCGTGTGCCTCCTCCTA 60.681 63.158 0.00 0.00 0.00 2.94
955 974 1.573108 CTGTTTCCTCTAGAGCCCCA 58.427 55.000 14.73 6.81 0.00 4.96
959 978 3.139397 TGTTTCCTCTAGAGCCCCAAAAA 59.861 43.478 14.73 2.91 0.00 1.94
966 985 0.036875 AGAGCCCCAAAAACTCTCCG 59.963 55.000 0.00 0.00 35.96 4.63
967 986 0.250770 GAGCCCCAAAAACTCTCCGT 60.251 55.000 0.00 0.00 0.00 4.69
969 988 0.313987 GCCCCAAAAACTCTCCGTTG 59.686 55.000 0.00 0.00 35.61 4.10
972 991 2.294074 CCCAAAAACTCTCCGTTGTCA 58.706 47.619 0.00 0.00 35.61 3.58
974 993 2.290641 CCAAAAACTCTCCGTTGTCAGG 59.709 50.000 0.00 0.00 35.61 3.86
979 998 1.766496 ACTCTCCGTTGTCAGGGAAAA 59.234 47.619 0.00 0.00 36.49 2.29
980 999 2.224305 ACTCTCCGTTGTCAGGGAAAAG 60.224 50.000 0.00 1.29 36.49 2.27
981 1000 1.071699 TCTCCGTTGTCAGGGAAAAGG 59.928 52.381 0.00 0.00 36.49 3.11
982 1001 0.109723 TCCGTTGTCAGGGAAAAGGG 59.890 55.000 2.22 2.22 36.47 3.95
984 1003 0.951558 CGTTGTCAGGGAAAAGGGTG 59.048 55.000 0.00 0.00 0.00 4.61
991 1010 0.698818 AGGGAAAAGGGTGGTGCTAG 59.301 55.000 0.00 0.00 0.00 3.42
992 1011 0.696501 GGGAAAAGGGTGGTGCTAGA 59.303 55.000 0.00 0.00 0.00 2.43
994 1013 1.628846 GGAAAAGGGTGGTGCTAGAGA 59.371 52.381 0.00 0.00 0.00 3.10
995 1014 2.355209 GGAAAAGGGTGGTGCTAGAGAG 60.355 54.545 0.00 0.00 0.00 3.20
1001 1020 2.324541 GGTGGTGCTAGAGAGATGGAT 58.675 52.381 0.00 0.00 0.00 3.41
1002 1021 2.036992 GGTGGTGCTAGAGAGATGGATG 59.963 54.545 0.00 0.00 0.00 3.51
1003 1022 2.961741 GTGGTGCTAGAGAGATGGATGA 59.038 50.000 0.00 0.00 0.00 2.92
1005 1024 4.769488 GTGGTGCTAGAGAGATGGATGATA 59.231 45.833 0.00 0.00 0.00 2.15
1007 1026 5.421374 TGGTGCTAGAGAGATGGATGATATG 59.579 44.000 0.00 0.00 0.00 1.78
1009 1028 5.127519 GTGCTAGAGAGATGGATGATATGCT 59.872 44.000 0.00 0.00 0.00 3.79
1011 1030 6.044046 GCTAGAGAGATGGATGATATGCTTG 58.956 44.000 0.00 0.00 0.00 4.01
1012 1031 4.834534 AGAGAGATGGATGATATGCTTGC 58.165 43.478 0.00 0.00 0.00 4.01
1014 1033 5.045505 AGAGAGATGGATGATATGCTTGCAT 60.046 40.000 12.88 12.88 35.81 3.96
1015 1034 5.186942 AGAGATGGATGATATGCTTGCATC 58.813 41.667 11.64 0.34 44.53 3.91
1018 1037 6.360844 GATGGATGATATGCTTGCATCTAC 57.639 41.667 11.64 5.69 42.45 2.59
1019 1038 5.494390 TGGATGATATGCTTGCATCTACT 57.506 39.130 11.64 0.00 38.69 2.57
1020 1039 5.243207 TGGATGATATGCTTGCATCTACTG 58.757 41.667 11.64 0.00 38.69 2.74
1021 1040 5.221783 TGGATGATATGCTTGCATCTACTGT 60.222 40.000 11.64 0.00 38.69 3.55
1025 1044 6.168389 TGATATGCTTGCATCTACTGTATGG 58.832 40.000 11.64 0.00 0.00 2.74
1030 1049 5.305386 TGCTTGCATCTACTGTATGGTCTAT 59.695 40.000 0.00 0.00 0.00 1.98
1032 1051 5.984695 TGCATCTACTGTATGGTCTATCC 57.015 43.478 0.00 0.00 0.00 2.59
1033 1052 4.772624 TGCATCTACTGTATGGTCTATCCC 59.227 45.833 0.00 0.00 34.77 3.85
1035 1054 5.126384 GCATCTACTGTATGGTCTATCCCTC 59.874 48.000 0.00 0.00 34.77 4.30
1036 1055 6.489603 CATCTACTGTATGGTCTATCCCTCT 58.510 44.000 0.00 0.00 34.77 3.69
1039 1058 3.643792 ACTGTATGGTCTATCCCTCTTGC 59.356 47.826 0.00 0.00 34.77 4.01
1042 1061 5.464069 TGTATGGTCTATCCCTCTTGCTTA 58.536 41.667 0.00 0.00 34.77 3.09
1046 1065 4.039245 TGGTCTATCCCTCTTGCTTAATCG 59.961 45.833 0.00 0.00 34.77 3.34
1048 1067 5.224135 GTCTATCCCTCTTGCTTAATCGTC 58.776 45.833 0.00 0.00 0.00 4.20
1053 1072 2.939103 CCTCTTGCTTAATCGTCCTTGG 59.061 50.000 0.00 0.00 0.00 3.61
1060 1079 3.374367 GCTTAATCGTCCTTGGTTTCTCC 59.626 47.826 0.00 0.00 0.00 3.71
1063 1082 1.420430 TCGTCCTTGGTTTCTCCTGT 58.580 50.000 0.00 0.00 37.07 4.00
1065 1084 1.797025 GTCCTTGGTTTCTCCTGTCG 58.203 55.000 0.00 0.00 37.07 4.35
1069 1088 0.107831 TTGGTTTCTCCTGTCGGTGG 59.892 55.000 0.00 0.00 37.07 4.61
1076 1095 1.891150 TCTCCTGTCGGTGGTTAGTTC 59.109 52.381 0.00 0.00 0.00 3.01
1078 1097 1.616865 TCCTGTCGGTGGTTAGTTCTG 59.383 52.381 0.00 0.00 0.00 3.02
1082 1101 2.067013 GTCGGTGGTTAGTTCTGCTTC 58.933 52.381 0.00 0.00 0.00 3.86
1084 1103 1.002087 CGGTGGTTAGTTCTGCTTCCT 59.998 52.381 0.00 0.00 0.00 3.36
1088 1107 4.443621 GTGGTTAGTTCTGCTTCCTATCC 58.556 47.826 0.00 0.00 0.00 2.59
1089 1108 3.454812 TGGTTAGTTCTGCTTCCTATCCC 59.545 47.826 0.00 0.00 0.00 3.85
1090 1109 3.492829 GGTTAGTTCTGCTTCCTATCCCG 60.493 52.174 0.00 0.00 0.00 5.14
1091 1110 1.123928 AGTTCTGCTTCCTATCCCGG 58.876 55.000 0.00 0.00 0.00 5.73
1092 1111 0.831307 GTTCTGCTTCCTATCCCGGT 59.169 55.000 0.00 0.00 0.00 5.28
1093 1112 0.830648 TTCTGCTTCCTATCCCGGTG 59.169 55.000 0.00 0.00 0.00 4.94
1097 1116 0.544697 GCTTCCTATCCCGGTGGAAA 59.455 55.000 13.77 2.74 45.98 3.13
1099 1118 2.422945 GCTTCCTATCCCGGTGGAAATT 60.423 50.000 13.77 0.00 45.98 1.82
1103 1122 2.687935 CCTATCCCGGTGGAAATTTGTG 59.312 50.000 0.00 0.00 45.98 3.33
1104 1123 0.894835 ATCCCGGTGGAAATTTGTGC 59.105 50.000 0.00 0.00 45.98 4.57
1106 1125 1.732683 CCGGTGGAAATTTGTGCGC 60.733 57.895 0.00 0.00 0.00 6.09
1108 1127 0.596083 CGGTGGAAATTTGTGCGCAA 60.596 50.000 14.00 9.01 0.00 4.85
1114 1133 2.663119 GGAAATTTGTGCGCAAGATGTC 59.337 45.455 14.00 10.97 43.02 3.06
1117 1136 0.592637 TTTGTGCGCAAGATGTCCAG 59.407 50.000 14.00 0.00 43.02 3.86
1120 1139 0.376152 GTGCGCAAGATGTCCAGATG 59.624 55.000 14.00 0.00 43.02 2.90
1121 1140 0.249955 TGCGCAAGATGTCCAGATGA 59.750 50.000 8.16 0.00 43.02 2.92
1122 1141 1.338960 TGCGCAAGATGTCCAGATGAA 60.339 47.619 8.16 0.00 43.02 2.57
1127 1146 4.495349 CGCAAGATGTCCAGATGAATGTTC 60.495 45.833 0.00 0.00 43.02 3.18
1128 1147 4.639310 GCAAGATGTCCAGATGAATGTTCT 59.361 41.667 0.00 0.00 0.00 3.01
1129 1148 5.125097 GCAAGATGTCCAGATGAATGTTCTT 59.875 40.000 0.00 0.00 0.00 2.52
1130 1149 6.677431 GCAAGATGTCCAGATGAATGTTCTTC 60.677 42.308 1.57 1.57 0.00 2.87
1131 1150 5.435291 AGATGTCCAGATGAATGTTCTTCC 58.565 41.667 5.36 0.00 33.28 3.46
1133 1152 5.246981 TGTCCAGATGAATGTTCTTCCTT 57.753 39.130 5.36 0.00 33.28 3.36
1134 1153 5.005740 TGTCCAGATGAATGTTCTTCCTTG 58.994 41.667 5.36 0.26 33.28 3.61
1136 1155 4.043310 TCCAGATGAATGTTCTTCCTTGGT 59.957 41.667 12.53 0.00 32.83 3.67
1137 1156 4.768968 CCAGATGAATGTTCTTCCTTGGTT 59.231 41.667 5.36 0.00 33.28 3.67
1141 1160 8.526147 CAGATGAATGTTCTTCCTTGGTTTATT 58.474 33.333 5.36 0.00 33.28 1.40
1145 1164 8.576442 TGAATGTTCTTCCTTGGTTTATTTCTC 58.424 33.333 0.00 0.00 0.00 2.87
1149 1168 5.488341 TCTTCCTTGGTTTATTTCTCTCCG 58.512 41.667 0.00 0.00 0.00 4.63
1151 1170 4.575885 TCCTTGGTTTATTTCTCTCCGTG 58.424 43.478 0.00 0.00 0.00 4.94
1152 1171 4.041198 TCCTTGGTTTATTTCTCTCCGTGT 59.959 41.667 0.00 0.00 0.00 4.49
1172 1285 2.042686 TCCTCTGATTTTCCATGGCG 57.957 50.000 6.96 0.00 0.00 5.69
1189 1325 1.227973 CGAAGGCTCTATTGGGGGC 60.228 63.158 0.00 0.00 0.00 5.80
1210 1346 0.387565 TCTTGGCCTTTTTGTTCGGC 59.612 50.000 3.32 0.00 43.03 5.54
1417 1574 2.594131 TCGTGTTCCTCCTCTCTTTCA 58.406 47.619 0.00 0.00 0.00 2.69
1427 1584 5.835280 TCCTCCTCTCTTTCAAAAAGCAAAT 59.165 36.000 0.00 0.00 0.00 2.32
1457 1615 1.205893 CTCTGCACCTACTTCTCCCAC 59.794 57.143 0.00 0.00 0.00 4.61
1477 1635 1.154836 GTGTTCTTGCGTTCGCTCG 60.155 57.895 17.63 8.91 0.00 5.03
1600 4528 4.241555 GCCTCCATGACGCCGGAT 62.242 66.667 5.05 0.00 0.00 4.18
1647 4581 1.443802 GGCAGCAACTACTTCCTGAC 58.556 55.000 0.00 0.00 0.00 3.51
1801 4735 0.254178 ACATGATCCTGGTGCTGGTC 59.746 55.000 0.00 0.00 0.00 4.02
1825 4769 1.092921 TTTGCGCGGTGTCTGTTCTT 61.093 50.000 8.83 0.00 0.00 2.52
1833 4777 3.548214 GCGGTGTCTGTTCTTTTCTTTCC 60.548 47.826 0.00 0.00 0.00 3.13
1869 4819 1.904287 TTGGGCGCTAATGAACTTGT 58.096 45.000 7.64 0.00 0.00 3.16
1889 4839 3.242706 TGTTCTCGTCGTTTTCGTCAGTA 60.243 43.478 0.00 0.00 44.46 2.74
1893 4843 1.335324 CGTCGTTTTCGTCAGTACCCT 60.335 52.381 0.00 0.00 44.46 4.34
1914 4864 2.673523 GCTGTGGAGGATGGTGCT 59.326 61.111 0.00 0.00 0.00 4.40
1945 4912 1.819208 GCATGTGTGGATGCGCCTA 60.819 57.895 4.18 0.00 39.47 3.93
1950 4917 2.421739 GTGGATGCGCCTACCGAT 59.578 61.111 4.18 0.00 40.02 4.18
1991 4975 4.093261 GCGCCGTTTTGTTTAGTTCCTATA 59.907 41.667 0.00 0.00 0.00 1.31
1992 4976 5.553721 CGCCGTTTTGTTTAGTTCCTATAC 58.446 41.667 0.00 0.00 0.00 1.47
1993 4977 5.349543 CGCCGTTTTGTTTAGTTCCTATACT 59.650 40.000 0.00 0.00 0.00 2.12
2097 5136 4.885325 GTCTTGTTCAGTTGGGGTTTAGAA 59.115 41.667 0.00 0.00 0.00 2.10
2153 5244 5.800941 GGAGTTTAGACTGTCTGTATGAACG 59.199 44.000 20.19 0.00 40.05 3.95
2173 5264 2.606108 GTGGACGGGATTTGAATTTGC 58.394 47.619 0.00 0.00 0.00 3.68
2177 5268 4.524714 TGGACGGGATTTGAATTTGCTTAA 59.475 37.500 0.00 0.00 0.00 1.85
2209 5307 6.147821 CCTTGAAAGTGTACTTATGTGACTGG 59.852 42.308 0.00 0.00 34.61 4.00
2231 5329 3.490078 GGAGACTCTATTTCGTGAGCAGG 60.490 52.174 1.74 0.00 33.92 4.85
2237 5569 4.442706 TCTATTTCGTGAGCAGGATTTCC 58.557 43.478 0.00 0.00 0.00 3.13
2254 5586 2.004583 TCCCATTCTTGACGCGTTAG 57.995 50.000 15.53 14.63 0.00 2.34
2255 5587 1.274167 TCCCATTCTTGACGCGTTAGT 59.726 47.619 15.53 0.00 0.00 2.24
2256 5588 2.492881 TCCCATTCTTGACGCGTTAGTA 59.507 45.455 15.53 8.66 0.00 1.82
2257 5589 3.131577 TCCCATTCTTGACGCGTTAGTAT 59.868 43.478 15.53 10.69 0.00 2.12
2334 5676 1.447140 GAACTCGGCGGTATGTGCA 60.447 57.895 7.21 0.00 0.00 4.57
2347 5689 1.819928 ATGTGCACGTAGGCAATCAA 58.180 45.000 10.57 0.00 46.93 2.57
2349 5691 0.168128 GTGCACGTAGGCAATCAACC 59.832 55.000 0.00 0.00 46.93 3.77
2350 5692 0.036164 TGCACGTAGGCAATCAACCT 59.964 50.000 0.00 0.00 41.65 3.50
2351 5693 0.727398 GCACGTAGGCAATCAACCTC 59.273 55.000 0.00 0.00 38.81 3.85
2352 5694 1.676014 GCACGTAGGCAATCAACCTCT 60.676 52.381 0.00 0.00 38.81 3.69
2353 5695 2.271800 CACGTAGGCAATCAACCTCTC 58.728 52.381 0.00 0.00 38.81 3.20
2354 5696 2.093973 CACGTAGGCAATCAACCTCTCT 60.094 50.000 0.00 0.00 38.81 3.10
2355 5697 2.166664 ACGTAGGCAATCAACCTCTCTC 59.833 50.000 0.00 0.00 38.81 3.20
2356 5698 2.428890 CGTAGGCAATCAACCTCTCTCT 59.571 50.000 0.00 0.00 38.81 3.10
2357 5699 3.118956 CGTAGGCAATCAACCTCTCTCTT 60.119 47.826 0.00 0.00 38.81 2.85
2358 5700 4.621747 CGTAGGCAATCAACCTCTCTCTTT 60.622 45.833 0.00 0.00 38.81 2.52
2359 5701 3.949132 AGGCAATCAACCTCTCTCTTTC 58.051 45.455 0.00 0.00 28.76 2.62
2360 5702 3.586618 AGGCAATCAACCTCTCTCTTTCT 59.413 43.478 0.00 0.00 28.76 2.52
2361 5703 3.688673 GGCAATCAACCTCTCTCTTTCTG 59.311 47.826 0.00 0.00 0.00 3.02
2363 5705 3.625649 ATCAACCTCTCTCTTTCTGCC 57.374 47.619 0.00 0.00 0.00 4.85
2375 5723 3.025978 TCTTTCTGCCTAATTGCATGGG 58.974 45.455 0.00 0.00 41.16 4.00
2394 5898 7.377398 GCATGGGCAAACACATAATGATAATA 58.623 34.615 0.00 0.00 40.72 0.98
2395 5899 7.871973 GCATGGGCAAACACATAATGATAATAA 59.128 33.333 0.00 0.00 40.72 1.40
2448 5952 5.408299 GGAATGCAACAAAGGTAACCATTTC 59.592 40.000 0.00 0.00 37.17 2.17
2462 5966 6.149807 GGTAACCATTTCGATTTGGAGTTACA 59.850 38.462 18.21 0.00 36.79 2.41
2464 5968 6.834168 ACCATTTCGATTTGGAGTTACATT 57.166 33.333 18.21 0.00 36.79 2.71
2465 5969 7.227049 ACCATTTCGATTTGGAGTTACATTT 57.773 32.000 18.21 0.00 36.79 2.32
2466 5970 7.666623 ACCATTTCGATTTGGAGTTACATTTT 58.333 30.769 18.21 0.00 36.79 1.82
2467 5971 8.147704 ACCATTTCGATTTGGAGTTACATTTTT 58.852 29.630 18.21 0.00 36.79 1.94
2486 5990 4.400529 TTTTCTTTCTTGAAGCCCAACC 57.599 40.909 0.00 0.00 35.24 3.77
2545 6052 5.300792 AGGAAAAAGCGGACAGTTCATAAAA 59.699 36.000 0.00 0.00 0.00 1.52
2592 6103 2.045536 GCCCTCCTGCCACAGAAG 60.046 66.667 0.00 0.00 32.44 2.85
2684 6196 1.227556 GCCTGCCTATACACCCACG 60.228 63.158 0.00 0.00 0.00 4.94
2721 6233 4.862574 GGTTTCCACAACAGAAGAACAAAC 59.137 41.667 0.00 0.00 0.00 2.93
2744 6256 5.073144 ACATCTTTTGTCTTGGGTTAGGAGA 59.927 40.000 0.00 0.00 30.89 3.71
2777 6289 0.830648 CCAAGAGAGATGGCCGGTAA 59.169 55.000 1.90 0.00 0.00 2.85
2784 6296 0.107654 AGATGGCCGGTAAGCTTCAC 60.108 55.000 0.00 0.00 0.00 3.18
2800 6312 3.423123 GCTTCACTGTACCGTTTGATTCG 60.423 47.826 0.00 0.00 0.00 3.34
2804 6316 3.982701 CACTGTACCGTTTGATTCGTGTA 59.017 43.478 0.00 0.00 0.00 2.90
2809 6321 3.666274 ACCGTTTGATTCGTGTATTGGA 58.334 40.909 0.00 0.00 0.00 3.53
2843 6355 5.801947 GCTAGTTTGTGCTTGTGATTTATGG 59.198 40.000 0.00 0.00 0.00 2.74
2847 6359 5.627499 TTGTGCTTGTGATTTATGGTCTC 57.373 39.130 0.00 0.00 0.00 3.36
2863 6375 2.554564 GGTCTCCGGGGTGAAATTTCTT 60.555 50.000 18.64 0.00 0.00 2.52
2888 6400 5.523552 GTCTTTGTTTCTTGGGATTTGTTGG 59.476 40.000 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.702726 GCTTTTCAAAAACTACTTTGGAATTTC 57.297 29.630 0.00 0.00 36.92 2.17
12 13 9.225436 TGCTTTTCAAAAACTACTTTGGAATTT 57.775 25.926 0.00 0.00 36.92 1.82
15 16 6.309251 CGTGCTTTTCAAAAACTACTTTGGAA 59.691 34.615 0.00 0.00 35.51 3.53
16 17 5.802956 CGTGCTTTTCAAAAACTACTTTGGA 59.197 36.000 0.00 0.00 37.00 3.53
30 31 8.600449 ATTCCAAATTTTATTCGTGCTTTTCA 57.400 26.923 0.00 0.00 0.00 2.69
31 32 9.528847 GAATTCCAAATTTTATTCGTGCTTTTC 57.471 29.630 0.00 0.00 0.00 2.29
32 33 9.271828 AGAATTCCAAATTTTATTCGTGCTTTT 57.728 25.926 0.65 0.00 33.38 2.27
33 34 8.831715 AGAATTCCAAATTTTATTCGTGCTTT 57.168 26.923 0.65 0.00 33.38 3.51
34 35 9.921637 TTAGAATTCCAAATTTTATTCGTGCTT 57.078 25.926 0.65 0.29 33.38 3.91
37 38 9.352784 TGCTTAGAATTCCAAATTTTATTCGTG 57.647 29.630 0.65 7.06 33.38 4.35
49 50 9.829507 TTTTCAGAAAAATGCTTAGAATTCCAA 57.170 25.926 5.81 0.00 29.44 3.53
74 75 9.991388 CTTGTTGTTCACAAAATGATGAAATTT 57.009 25.926 0.00 0.00 45.11 1.82
78 79 8.768957 TTTCTTGTTGTTCACAAAATGATGAA 57.231 26.923 0.00 0.00 45.11 2.57
79 80 8.768957 TTTTCTTGTTGTTCACAAAATGATGA 57.231 26.923 0.00 0.00 45.11 2.92
149 150 8.443953 TCGGGATTTCAAAATTTGTTCAATTT 57.556 26.923 5.56 0.00 45.50 1.82
150 151 8.443953 TTCGGGATTTCAAAATTTGTTCAATT 57.556 26.923 5.56 0.00 36.57 2.32
151 152 8.505625 CATTCGGGATTTCAAAATTTGTTCAAT 58.494 29.630 5.56 3.47 0.00 2.57
153 154 6.989169 ACATTCGGGATTTCAAAATTTGTTCA 59.011 30.769 5.56 0.00 0.00 3.18
154 155 7.420184 ACATTCGGGATTTCAAAATTTGTTC 57.580 32.000 5.56 2.31 0.00 3.18
156 157 7.216494 AGAACATTCGGGATTTCAAAATTTGT 58.784 30.769 5.56 0.00 0.00 2.83
159 160 7.441017 TGAAGAACATTCGGGATTTCAAAATT 58.559 30.769 0.00 0.00 0.00 1.82
162 163 6.398234 TTGAAGAACATTCGGGATTTCAAA 57.602 33.333 4.42 0.00 32.16 2.69
163 164 6.398234 TTTGAAGAACATTCGGGATTTCAA 57.602 33.333 3.25 3.25 32.94 2.69
164 165 6.398234 TTTTGAAGAACATTCGGGATTTCA 57.602 33.333 0.00 0.00 0.00 2.69
165 166 5.346011 GCTTTTGAAGAACATTCGGGATTTC 59.654 40.000 0.00 0.00 0.00 2.17
166 167 5.221422 TGCTTTTGAAGAACATTCGGGATTT 60.221 36.000 0.00 0.00 0.00 2.17
167 168 4.280677 TGCTTTTGAAGAACATTCGGGATT 59.719 37.500 0.00 0.00 0.00 3.01
169 170 3.218453 TGCTTTTGAAGAACATTCGGGA 58.782 40.909 0.00 0.00 0.00 5.14
170 171 3.641437 TGCTTTTGAAGAACATTCGGG 57.359 42.857 0.00 0.00 0.00 5.14
201 202 7.834068 TTTCAAAAATTGTTCGGAATGTCAA 57.166 28.000 0.00 0.00 0.00 3.18
202 203 7.834068 TTTTCAAAAATTGTTCGGAATGTCA 57.166 28.000 0.00 0.00 0.00 3.58
204 205 8.034058 TGTTTTTCAAAAATTGTTCGGAATGT 57.966 26.923 0.00 0.00 0.00 2.71
205 206 8.945930 CATGTTTTTCAAAAATTGTTCGGAATG 58.054 29.630 0.00 0.00 0.00 2.67
206 207 8.887717 TCATGTTTTTCAAAAATTGTTCGGAAT 58.112 25.926 0.00 0.00 0.00 3.01
207 208 8.256611 TCATGTTTTTCAAAAATTGTTCGGAA 57.743 26.923 0.00 0.00 0.00 4.30
208 209 7.834068 TCATGTTTTTCAAAAATTGTTCGGA 57.166 28.000 0.00 0.00 0.00 4.55
318 319 4.116747 TCCAAACAATGAGCGTGTTTTT 57.883 36.364 7.75 0.00 44.73 1.94
319 320 3.791973 TCCAAACAATGAGCGTGTTTT 57.208 38.095 7.75 0.00 44.73 2.43
321 322 4.320608 AATTCCAAACAATGAGCGTGTT 57.679 36.364 0.00 0.00 40.92 3.32
322 323 4.320608 AAATTCCAAACAATGAGCGTGT 57.679 36.364 0.00 0.00 0.00 4.49
323 324 4.744137 TCAAAATTCCAAACAATGAGCGTG 59.256 37.500 0.00 0.00 0.00 5.34
360 361 9.658799 TCTGTTCATTTTCCAAAACAATTTGTA 57.341 25.926 1.76 0.00 43.59 2.41
405 406 8.117988 GGTTTTTGTTTCTTTTACCGATTTTCC 58.882 33.333 0.00 0.00 0.00 3.13
407 408 7.201539 CGGGTTTTTGTTTCTTTTACCGATTTT 60.202 33.333 0.00 0.00 39.92 1.82
408 409 6.256104 CGGGTTTTTGTTTCTTTTACCGATTT 59.744 34.615 0.00 0.00 39.92 2.17
410 411 5.283294 CGGGTTTTTGTTTCTTTTACCGAT 58.717 37.500 0.00 0.00 39.92 4.18
411 412 4.439837 CCGGGTTTTTGTTTCTTTTACCGA 60.440 41.667 0.00 0.00 39.92 4.69
413 414 4.757594 ACCGGGTTTTTGTTTCTTTTACC 58.242 39.130 6.32 0.00 0.00 2.85
414 415 5.868258 TGAACCGGGTTTTTGTTTCTTTTAC 59.132 36.000 14.69 0.00 0.00 2.01
415 416 6.034161 TGAACCGGGTTTTTGTTTCTTTTA 57.966 33.333 14.69 0.00 0.00 1.52
416 417 4.895961 TGAACCGGGTTTTTGTTTCTTTT 58.104 34.783 14.69 0.00 0.00 2.27
417 418 4.538746 TGAACCGGGTTTTTGTTTCTTT 57.461 36.364 14.69 0.00 0.00 2.52
419 420 3.118920 CCTTGAACCGGGTTTTTGTTTCT 60.119 43.478 14.69 0.00 0.00 2.52
421 422 2.568062 ACCTTGAACCGGGTTTTTGTTT 59.432 40.909 14.69 0.00 30.80 2.83
424 425 2.482316 GGAACCTTGAACCGGGTTTTTG 60.482 50.000 14.69 6.90 44.69 2.44
426 427 1.405872 GGAACCTTGAACCGGGTTTT 58.594 50.000 14.69 3.52 44.69 2.43
427 428 3.120796 GGAACCTTGAACCGGGTTT 57.879 52.632 14.69 0.00 44.69 3.27
441 442 1.956802 CAGAGCCGGTTTTGGGAAC 59.043 57.895 1.90 0.00 0.00 3.62
442 443 1.901464 GCAGAGCCGGTTTTGGGAA 60.901 57.895 10.85 0.00 0.00 3.97
444 445 3.373565 GGCAGAGCCGGTTTTGGG 61.374 66.667 10.85 0.00 39.62 4.12
454 455 2.507110 TTACCACAGCGAGGCAGAGC 62.507 60.000 0.00 0.00 0.00 4.09
455 456 0.459237 CTTACCACAGCGAGGCAGAG 60.459 60.000 0.00 0.00 0.00 3.35
457 458 1.448540 CCTTACCACAGCGAGGCAG 60.449 63.158 0.00 0.00 0.00 4.85
460 461 1.079127 CCACCTTACCACAGCGAGG 60.079 63.158 0.00 0.00 35.39 4.63
461 462 0.389948 GTCCACCTTACCACAGCGAG 60.390 60.000 0.00 0.00 0.00 5.03
465 466 1.189524 TCCGGTCCACCTTACCACAG 61.190 60.000 0.00 0.00 36.78 3.66
468 469 1.914764 GGTCCGGTCCACCTTACCA 60.915 63.158 13.32 0.00 37.98 3.25
472 473 0.037734 GATTTGGTCCGGTCCACCTT 59.962 55.000 20.69 7.89 37.20 3.50
473 474 0.840722 AGATTTGGTCCGGTCCACCT 60.841 55.000 20.69 14.11 37.20 4.00
474 475 0.392595 GAGATTTGGTCCGGTCCACC 60.393 60.000 20.69 12.07 37.20 4.61
475 476 0.739813 CGAGATTTGGTCCGGTCCAC 60.740 60.000 20.69 9.25 37.20 4.02
476 477 1.594833 CGAGATTTGGTCCGGTCCA 59.405 57.895 17.04 17.04 35.49 4.02
477 478 1.814169 GCGAGATTTGGTCCGGTCC 60.814 63.158 11.20 11.20 0.00 4.46
478 479 2.165301 CGCGAGATTTGGTCCGGTC 61.165 63.158 0.00 0.00 0.00 4.79
479 480 2.125673 CGCGAGATTTGGTCCGGT 60.126 61.111 0.00 0.00 0.00 5.28
483 484 1.908066 AAACCGCGCGAGATTTGGTC 61.908 55.000 34.63 0.00 31.17 4.02
484 485 1.908066 GAAACCGCGCGAGATTTGGT 61.908 55.000 34.63 16.20 33.45 3.67
485 486 1.226018 GAAACCGCGCGAGATTTGG 60.226 57.895 34.63 15.43 0.00 3.28
486 487 0.789383 GTGAAACCGCGCGAGATTTG 60.789 55.000 34.63 16.26 0.00 2.32
487 488 1.495951 GTGAAACCGCGCGAGATTT 59.504 52.632 34.63 26.48 0.00 2.17
488 489 3.165498 GTGAAACCGCGCGAGATT 58.835 55.556 34.63 22.24 0.00 2.40
499 500 6.647067 CGGAAGAGAATATCATAGGGTGAAAC 59.353 42.308 0.00 0.00 40.97 2.78
503 504 5.730296 ACGGAAGAGAATATCATAGGGTG 57.270 43.478 0.00 0.00 0.00 4.61
506 507 6.597832 AGGAACGGAAGAGAATATCATAGG 57.402 41.667 0.00 0.00 0.00 2.57
507 508 8.126074 CGATAGGAACGGAAGAGAATATCATAG 58.874 40.741 0.00 0.00 0.00 2.23
508 509 7.610692 ACGATAGGAACGGAAGAGAATATCATA 59.389 37.037 0.00 0.00 43.77 2.15
509 510 6.434652 ACGATAGGAACGGAAGAGAATATCAT 59.565 38.462 0.00 0.00 43.77 2.45
510 511 5.768662 ACGATAGGAACGGAAGAGAATATCA 59.231 40.000 0.00 0.00 43.77 2.15
512 513 6.005198 AGACGATAGGAACGGAAGAGAATAT 58.995 40.000 0.00 0.00 43.77 1.28
514 515 4.036971 CAGACGATAGGAACGGAAGAGAAT 59.963 45.833 0.00 0.00 43.77 2.40
516 517 2.943690 CAGACGATAGGAACGGAAGAGA 59.056 50.000 0.00 0.00 43.77 3.10
517 518 2.683867 ACAGACGATAGGAACGGAAGAG 59.316 50.000 0.00 0.00 43.77 2.85
519 520 3.119602 TGAACAGACGATAGGAACGGAAG 60.120 47.826 0.00 0.00 43.77 3.46
522 523 2.933495 TGAACAGACGATAGGAACGG 57.067 50.000 0.00 0.00 43.77 4.44
523 524 3.367025 GGTTTGAACAGACGATAGGAACG 59.633 47.826 0.00 0.00 43.77 3.95
528 529 6.480524 TGAAATGGTTTGAACAGACGATAG 57.519 37.500 0.00 0.00 46.19 2.08
530 531 5.766150 TTGAAATGGTTTGAACAGACGAT 57.234 34.783 0.00 0.00 0.00 3.73
532 533 5.339990 ACTTTGAAATGGTTTGAACAGACG 58.660 37.500 0.00 0.00 0.00 4.18
533 534 7.432252 CACTACTTTGAAATGGTTTGAACAGAC 59.568 37.037 0.00 0.00 0.00 3.51
535 536 7.257722 ACACTACTTTGAAATGGTTTGAACAG 58.742 34.615 0.00 0.00 0.00 3.16
536 537 7.094162 TGACACTACTTTGAAATGGTTTGAACA 60.094 33.333 0.00 0.00 0.00 3.18
537 538 7.254852 TGACACTACTTTGAAATGGTTTGAAC 58.745 34.615 0.00 0.00 0.00 3.18
540 541 6.795399 ACTGACACTACTTTGAAATGGTTTG 58.205 36.000 0.00 0.00 0.00 2.93
542 543 7.404671 AAACTGACACTACTTTGAAATGGTT 57.595 32.000 0.00 0.00 0.00 3.67
543 544 6.238374 CGAAACTGACACTACTTTGAAATGGT 60.238 38.462 0.00 0.00 0.00 3.55
544 545 6.136071 CGAAACTGACACTACTTTGAAATGG 58.864 40.000 0.00 0.00 0.00 3.16
545 546 6.628856 CACGAAACTGACACTACTTTGAAATG 59.371 38.462 0.00 0.00 0.00 2.32
546 547 6.238374 CCACGAAACTGACACTACTTTGAAAT 60.238 38.462 0.00 0.00 0.00 2.17
547 548 5.064198 CCACGAAACTGACACTACTTTGAAA 59.936 40.000 0.00 0.00 0.00 2.69
549 550 4.116961 CCACGAAACTGACACTACTTTGA 58.883 43.478 0.00 0.00 0.00 2.69
550 551 3.869246 ACCACGAAACTGACACTACTTTG 59.131 43.478 0.00 0.00 0.00 2.77
551 552 3.869246 CACCACGAAACTGACACTACTTT 59.131 43.478 0.00 0.00 0.00 2.66
552 553 3.454375 CACCACGAAACTGACACTACTT 58.546 45.455 0.00 0.00 0.00 2.24
553 554 2.802057 GCACCACGAAACTGACACTACT 60.802 50.000 0.00 0.00 0.00 2.57
554 555 1.525619 GCACCACGAAACTGACACTAC 59.474 52.381 0.00 0.00 0.00 2.73
556 557 2.690326 GCACCACGAAACTGACACT 58.310 52.632 0.00 0.00 0.00 3.55
568 569 0.237498 GCCTCACTTTAACGCACCAC 59.763 55.000 0.00 0.00 0.00 4.16
570 571 0.947180 TCGCCTCACTTTAACGCACC 60.947 55.000 0.00 0.00 0.00 5.01
571 572 1.076332 ATCGCCTCACTTTAACGCAC 58.924 50.000 0.00 0.00 0.00 5.34
574 575 1.517276 CGCTATCGCCTCACTTTAACG 59.483 52.381 0.00 0.00 0.00 3.18
575 576 2.534757 GACGCTATCGCCTCACTTTAAC 59.465 50.000 0.00 0.00 39.84 2.01
576 577 2.164827 TGACGCTATCGCCTCACTTTAA 59.835 45.455 0.00 0.00 39.84 1.52
577 578 1.746787 TGACGCTATCGCCTCACTTTA 59.253 47.619 0.00 0.00 39.84 1.85
578 579 0.530744 TGACGCTATCGCCTCACTTT 59.469 50.000 0.00 0.00 39.84 2.66
581 582 1.552348 GCATGACGCTATCGCCTCAC 61.552 60.000 0.00 0.00 39.84 3.51
592 593 2.270923 TGAACTGATACAGCATGACGC 58.729 47.619 0.00 0.00 39.69 5.19
593 594 5.260900 CAAATGAACTGATACAGCATGACG 58.739 41.667 0.00 0.00 39.69 4.35
597 598 5.503927 AGTCCAAATGAACTGATACAGCAT 58.496 37.500 0.00 0.00 34.37 3.79
598 599 4.910195 AGTCCAAATGAACTGATACAGCA 58.090 39.130 0.00 0.00 34.37 4.41
600 601 6.313905 GTGGTAGTCCAAATGAACTGATACAG 59.686 42.308 0.00 0.00 46.15 2.74
603 604 5.249622 TGGTGGTAGTCCAAATGAACTGATA 59.750 40.000 0.00 0.00 46.15 2.15
605 606 3.392947 TGGTGGTAGTCCAAATGAACTGA 59.607 43.478 0.00 0.00 46.15 3.41
606 607 3.502211 GTGGTGGTAGTCCAAATGAACTG 59.498 47.826 0.00 0.00 46.15 3.16
607 608 3.497942 GGTGGTGGTAGTCCAAATGAACT 60.498 47.826 0.00 0.00 46.15 3.01
609 610 2.443632 TGGTGGTGGTAGTCCAAATGAA 59.556 45.455 0.00 0.00 46.15 2.57
610 611 2.058705 TGGTGGTGGTAGTCCAAATGA 58.941 47.619 0.00 0.00 46.15 2.57
611 612 2.577606 TGGTGGTGGTAGTCCAAATG 57.422 50.000 0.00 0.00 46.15 2.32
614 615 1.002659 CGAATGGTGGTGGTAGTCCAA 59.997 52.381 0.00 0.00 46.15 3.53
616 617 0.611714 ACGAATGGTGGTGGTAGTCC 59.388 55.000 0.00 0.00 0.00 3.85
619 620 2.007049 GCTCACGAATGGTGGTGGTAG 61.007 57.143 0.00 0.00 46.96 3.18
620 621 0.036765 GCTCACGAATGGTGGTGGTA 60.037 55.000 0.00 0.00 46.96 3.25
621 622 1.302511 GCTCACGAATGGTGGTGGT 60.303 57.895 0.00 0.00 46.96 4.16
623 624 0.518636 CTTGCTCACGAATGGTGGTG 59.481 55.000 0.00 0.00 46.96 4.17
624 625 0.108585 ACTTGCTCACGAATGGTGGT 59.891 50.000 0.00 0.00 46.96 4.16
625 626 0.518636 CACTTGCTCACGAATGGTGG 59.481 55.000 0.00 0.00 46.96 4.61
626 627 3.685163 CGCACTTGCTCACGAATGGTG 62.685 57.143 0.00 0.00 40.63 4.17
628 629 1.133253 CGCACTTGCTCACGAATGG 59.867 57.895 0.00 0.00 39.32 3.16
631 632 1.005037 ATCCGCACTTGCTCACGAA 60.005 52.632 0.00 0.00 39.32 3.85
633 634 2.792290 CGATCCGCACTTGCTCACG 61.792 63.158 0.00 0.00 39.32 4.35
635 636 1.446099 GACGATCCGCACTTGCTCA 60.446 57.895 0.00 0.00 39.32 4.26
636 637 0.807667 ATGACGATCCGCACTTGCTC 60.808 55.000 0.00 0.00 39.32 4.26
637 638 1.086067 CATGACGATCCGCACTTGCT 61.086 55.000 0.00 0.00 39.32 3.91
638 639 1.349627 CATGACGATCCGCACTTGC 59.650 57.895 0.00 0.00 37.78 4.01
639 640 1.349627 GCATGACGATCCGCACTTG 59.650 57.895 0.00 0.00 0.00 3.16
640 641 3.799753 GCATGACGATCCGCACTT 58.200 55.556 0.00 0.00 0.00 3.16
654 655 0.457681 GTTTTTACCATGGCGCGCAT 60.458 50.000 34.42 20.93 0.00 4.73
657 658 1.335935 CTTGTTTTTACCATGGCGCG 58.664 50.000 13.04 0.00 0.00 6.86
658 659 1.067693 GCTTGTTTTTACCATGGCGC 58.932 50.000 13.04 0.00 0.00 6.53
659 660 2.288152 ACTGCTTGTTTTTACCATGGCG 60.288 45.455 13.04 0.00 0.00 5.69
660 661 3.317150 GACTGCTTGTTTTTACCATGGC 58.683 45.455 13.04 0.00 0.00 4.40
661 662 3.252215 TCGACTGCTTGTTTTTACCATGG 59.748 43.478 11.19 11.19 0.00 3.66
663 664 5.705609 AATCGACTGCTTGTTTTTACCAT 57.294 34.783 0.00 0.00 0.00 3.55
667 668 7.699566 ACAGTAAAATCGACTGCTTGTTTTTA 58.300 30.769 2.76 0.00 46.85 1.52
668 669 6.560711 ACAGTAAAATCGACTGCTTGTTTTT 58.439 32.000 2.76 0.00 46.85 1.94
748 751 1.877443 GACGCAGCCTTTTCAGGTTTA 59.123 47.619 0.00 0.00 43.18 2.01
800 803 1.227853 GGTACATCCATGGACGGGC 60.228 63.158 18.99 5.94 42.67 6.13
811 814 2.093658 ACATCGGTCAAGGTGGTACATC 60.094 50.000 0.00 0.00 44.52 3.06
855 864 0.189822 AGGTGAGGATAGGAGGAGGC 59.810 60.000 0.00 0.00 0.00 4.70
955 974 2.171870 TCCCTGACAACGGAGAGTTTTT 59.828 45.455 0.00 0.00 42.02 1.94
959 978 1.420430 TTTCCCTGACAACGGAGAGT 58.580 50.000 0.00 0.00 0.00 3.24
966 985 1.328279 CCACCCTTTTCCCTGACAAC 58.672 55.000 0.00 0.00 0.00 3.32
967 986 0.930726 ACCACCCTTTTCCCTGACAA 59.069 50.000 0.00 0.00 0.00 3.18
969 988 1.179174 GCACCACCCTTTTCCCTGAC 61.179 60.000 0.00 0.00 0.00 3.51
972 991 0.698818 CTAGCACCACCCTTTTCCCT 59.301 55.000 0.00 0.00 0.00 4.20
974 993 1.628846 TCTCTAGCACCACCCTTTTCC 59.371 52.381 0.00 0.00 0.00 3.13
979 998 1.690845 CCATCTCTCTAGCACCACCCT 60.691 57.143 0.00 0.00 0.00 4.34
980 999 0.755686 CCATCTCTCTAGCACCACCC 59.244 60.000 0.00 0.00 0.00 4.61
981 1000 1.781786 TCCATCTCTCTAGCACCACC 58.218 55.000 0.00 0.00 0.00 4.61
982 1001 2.961741 TCATCCATCTCTCTAGCACCAC 59.038 50.000 0.00 0.00 0.00 4.16
984 1003 5.681954 GCATATCATCCATCTCTCTAGCACC 60.682 48.000 0.00 0.00 0.00 5.01
991 1010 4.576879 TGCAAGCATATCATCCATCTCTC 58.423 43.478 0.00 0.00 0.00 3.20
992 1011 4.635699 TGCAAGCATATCATCCATCTCT 57.364 40.909 0.00 0.00 0.00 3.10
994 1013 5.180810 AGATGCAAGCATATCATCCATCT 57.819 39.130 7.64 0.00 37.82 2.90
995 1014 6.037281 CAGTAGATGCAAGCATATCATCCATC 59.963 42.308 7.64 0.00 37.82 3.51
1001 1020 6.168389 CCATACAGTAGATGCAAGCATATCA 58.832 40.000 7.64 0.00 36.70 2.15
1002 1021 6.169094 ACCATACAGTAGATGCAAGCATATC 58.831 40.000 7.64 0.00 36.70 1.63
1003 1022 6.013898 AGACCATACAGTAGATGCAAGCATAT 60.014 38.462 7.64 7.50 36.70 1.78
1005 1024 4.102210 AGACCATACAGTAGATGCAAGCAT 59.898 41.667 7.35 7.35 39.69 3.79
1007 1026 4.065321 AGACCATACAGTAGATGCAAGC 57.935 45.455 0.00 0.00 0.00 4.01
1009 1028 5.246203 GGGATAGACCATACAGTAGATGCAA 59.754 44.000 0.00 0.00 41.20 4.08
1011 1030 5.020132 AGGGATAGACCATACAGTAGATGC 58.980 45.833 0.00 0.00 41.20 3.91
1012 1031 6.489603 AGAGGGATAGACCATACAGTAGATG 58.510 44.000 0.00 0.00 41.20 2.90
1014 1033 6.307776 CAAGAGGGATAGACCATACAGTAGA 58.692 44.000 0.00 0.00 41.20 2.59
1015 1034 5.047660 GCAAGAGGGATAGACCATACAGTAG 60.048 48.000 0.00 0.00 41.20 2.57
1017 1036 3.643792 GCAAGAGGGATAGACCATACAGT 59.356 47.826 0.00 0.00 41.20 3.55
1018 1037 3.900601 AGCAAGAGGGATAGACCATACAG 59.099 47.826 0.00 0.00 41.20 2.74
1019 1038 3.928754 AGCAAGAGGGATAGACCATACA 58.071 45.455 0.00 0.00 41.20 2.29
1020 1039 4.965200 AAGCAAGAGGGATAGACCATAC 57.035 45.455 0.00 0.00 41.20 2.39
1021 1040 6.071334 CGATTAAGCAAGAGGGATAGACCATA 60.071 42.308 0.00 0.00 41.20 2.74
1025 1044 5.203060 ACGATTAAGCAAGAGGGATAGAC 57.797 43.478 0.00 0.00 0.00 2.59
1030 1049 2.467880 AGGACGATTAAGCAAGAGGGA 58.532 47.619 0.00 0.00 0.00 4.20
1032 1051 2.939103 CCAAGGACGATTAAGCAAGAGG 59.061 50.000 0.00 0.00 0.00 3.69
1033 1052 3.600388 ACCAAGGACGATTAAGCAAGAG 58.400 45.455 0.00 0.00 0.00 2.85
1035 1054 4.455877 AGAAACCAAGGACGATTAAGCAAG 59.544 41.667 0.00 0.00 0.00 4.01
1036 1055 4.394729 AGAAACCAAGGACGATTAAGCAA 58.605 39.130 0.00 0.00 0.00 3.91
1039 1058 4.631813 CAGGAGAAACCAAGGACGATTAAG 59.368 45.833 0.00 0.00 42.04 1.85
1042 1061 2.372172 ACAGGAGAAACCAAGGACGATT 59.628 45.455 0.00 0.00 42.04 3.34
1046 1065 1.608283 CCGACAGGAGAAACCAAGGAC 60.608 57.143 0.00 0.00 42.04 3.85
1048 1067 0.396811 ACCGACAGGAGAAACCAAGG 59.603 55.000 0.00 0.00 42.04 3.61
1053 1072 2.036862 ACTAACCACCGACAGGAGAAAC 59.963 50.000 0.00 0.00 41.02 2.78
1060 1079 1.000955 AGCAGAACTAACCACCGACAG 59.999 52.381 0.00 0.00 0.00 3.51
1063 1082 1.001633 GGAAGCAGAACTAACCACCGA 59.998 52.381 0.00 0.00 0.00 4.69
1065 1084 2.861147 AGGAAGCAGAACTAACCACC 57.139 50.000 0.00 0.00 0.00 4.61
1069 1088 3.492829 CCGGGATAGGAAGCAGAACTAAC 60.493 52.174 0.00 0.00 0.00 2.34
1076 1095 1.048724 TCCACCGGGATAGGAAGCAG 61.049 60.000 6.32 0.00 38.64 4.24
1078 1097 0.544697 TTTCCACCGGGATAGGAAGC 59.455 55.000 6.32 0.00 44.48 3.86
1082 1101 2.687935 CACAAATTTCCACCGGGATAGG 59.312 50.000 6.32 1.73 44.48 2.57
1084 1103 2.096248 GCACAAATTTCCACCGGGATA 58.904 47.619 6.32 0.00 44.48 2.59
1088 1107 1.732683 GCGCACAAATTTCCACCGG 60.733 57.895 0.30 0.00 0.00 5.28
1089 1108 0.596083 TTGCGCACAAATTTCCACCG 60.596 50.000 11.12 0.00 31.21 4.94
1090 1109 1.139163 CTTGCGCACAAATTTCCACC 58.861 50.000 11.12 0.00 34.74 4.61
1091 1110 2.132740 TCTTGCGCACAAATTTCCAC 57.867 45.000 11.12 0.00 34.74 4.02
1092 1111 2.035704 ACATCTTGCGCACAAATTTCCA 59.964 40.909 11.12 0.00 34.74 3.53
1093 1112 2.663119 GACATCTTGCGCACAAATTTCC 59.337 45.455 11.12 0.00 34.74 3.13
1095 1114 2.035704 TGGACATCTTGCGCACAAATTT 59.964 40.909 11.12 0.00 34.74 1.82
1097 1116 1.200716 CTGGACATCTTGCGCACAAAT 59.799 47.619 11.12 0.02 34.74 2.32
1099 1118 0.250252 TCTGGACATCTTGCGCACAA 60.250 50.000 11.12 0.00 0.00 3.33
1103 1122 1.372582 TTCATCTGGACATCTTGCGC 58.627 50.000 0.00 0.00 0.00 6.09
1104 1123 2.941064 ACATTCATCTGGACATCTTGCG 59.059 45.455 0.00 0.00 0.00 4.85
1106 1125 6.183360 GGAAGAACATTCATCTGGACATCTTG 60.183 42.308 0.00 0.00 0.00 3.02
1108 1127 5.191323 AGGAAGAACATTCATCTGGACATCT 59.809 40.000 0.00 0.00 0.00 2.90
1114 1133 4.338879 ACCAAGGAAGAACATTCATCTGG 58.661 43.478 0.00 4.47 0.00 3.86
1117 1136 9.358872 GAAATAAACCAAGGAAGAACATTCATC 57.641 33.333 0.00 0.00 0.00 2.92
1120 1139 8.797438 AGAGAAATAAACCAAGGAAGAACATTC 58.203 33.333 0.00 0.00 0.00 2.67
1121 1140 8.712228 AGAGAAATAAACCAAGGAAGAACATT 57.288 30.769 0.00 0.00 0.00 2.71
1122 1141 7.394641 GGAGAGAAATAAACCAAGGAAGAACAT 59.605 37.037 0.00 0.00 0.00 2.71
1127 1146 5.122396 CACGGAGAGAAATAAACCAAGGAAG 59.878 44.000 0.00 0.00 0.00 3.46
1128 1147 5.001232 CACGGAGAGAAATAAACCAAGGAA 58.999 41.667 0.00 0.00 0.00 3.36
1129 1148 4.041198 ACACGGAGAGAAATAAACCAAGGA 59.959 41.667 0.00 0.00 0.00 3.36
1130 1149 4.324267 ACACGGAGAGAAATAAACCAAGG 58.676 43.478 0.00 0.00 0.00 3.61
1131 1150 5.106673 GGAACACGGAGAGAAATAAACCAAG 60.107 44.000 0.00 0.00 0.00 3.61
1133 1152 4.041198 AGGAACACGGAGAGAAATAAACCA 59.959 41.667 0.00 0.00 0.00 3.67
1134 1153 4.576879 AGGAACACGGAGAGAAATAAACC 58.423 43.478 0.00 0.00 0.00 3.27
1136 1155 5.245301 TCAGAGGAACACGGAGAGAAATAAA 59.755 40.000 0.00 0.00 0.00 1.40
1137 1156 4.770531 TCAGAGGAACACGGAGAGAAATAA 59.229 41.667 0.00 0.00 0.00 1.40
1141 1160 2.287977 TCAGAGGAACACGGAGAGAA 57.712 50.000 0.00 0.00 0.00 2.87
1145 1164 3.003480 GGAAAATCAGAGGAACACGGAG 58.997 50.000 0.00 0.00 0.00 4.63
1149 1168 3.119352 GCCATGGAAAATCAGAGGAACAC 60.119 47.826 18.40 0.00 0.00 3.32
1151 1170 2.098117 CGCCATGGAAAATCAGAGGAAC 59.902 50.000 18.40 0.00 0.00 3.62
1152 1171 2.026356 TCGCCATGGAAAATCAGAGGAA 60.026 45.455 18.40 0.00 0.00 3.36
1172 1285 0.553333 AAGCCCCCAATAGAGCCTTC 59.447 55.000 0.00 0.00 0.00 3.46
1189 1325 2.742774 CCGAACAAAAAGGCCAAGAAG 58.257 47.619 5.01 0.00 0.00 2.85
1210 1346 3.882025 GGCAGAACTTGGCGAGAG 58.118 61.111 9.20 0.00 42.97 3.20
1223 1367 3.003482 GCAGAGCAAGATCATAAAGGCAG 59.997 47.826 0.00 0.00 0.00 4.85
1384 1541 5.293569 GGAGGAACACGAAATCGATTACAAT 59.706 40.000 11.83 0.00 43.02 2.71
1386 1543 4.081862 AGGAGGAACACGAAATCGATTACA 60.082 41.667 11.83 0.00 43.02 2.41
1427 1584 1.301716 GGTGCAGAGGAACGCAAGA 60.302 57.895 0.00 0.00 40.44 3.02
1457 1615 2.127758 GCGAACGCAAGAACACGG 60.128 61.111 14.26 0.00 41.49 4.94
1477 1635 1.408702 GCAGAGTCAGATGGAGAGACC 59.591 57.143 0.00 0.00 39.54 3.85
1550 4472 3.826754 CAGCAGCAGCAGCATGGG 61.827 66.667 12.92 0.00 45.49 4.00
1584 4512 2.280389 CATCCGGCGTCATGGAGG 60.280 66.667 6.01 0.00 37.76 4.30
1647 4581 2.279120 GGGAGAGCACGCAGATCG 60.279 66.667 0.00 0.00 45.38 3.69
1801 4735 1.956170 AGACACCGCGCAAAGACTG 60.956 57.895 8.75 0.00 0.00 3.51
1869 4819 2.480224 ACTGACGAAAACGACGAGAA 57.520 45.000 0.00 0.00 34.70 2.87
1893 4843 4.100084 CCATCCTCCACAGCCGCA 62.100 66.667 0.00 0.00 0.00 5.69
1950 4917 2.212652 CGCAAATCCATCTTCGATCCA 58.787 47.619 0.00 0.00 0.00 3.41
1966 4933 2.452105 GAACTAAACAAAACGGCGCAA 58.548 42.857 10.83 0.00 0.00 4.85
1991 4975 8.108364 TCTAACTTAAGTAGCAGAGTAGGAAGT 58.892 37.037 8.92 0.00 0.00 3.01
1992 4976 8.508883 TCTAACTTAAGTAGCAGAGTAGGAAG 57.491 38.462 8.92 0.00 0.00 3.46
1993 4977 8.874744 TTCTAACTTAAGTAGCAGAGTAGGAA 57.125 34.615 8.92 0.30 0.00 3.36
2052 5082 9.965824 AAGACAACAACAAAATGGTAAGATAAG 57.034 29.630 0.00 0.00 0.00 1.73
2097 5136 4.881273 TGCTACAAACAAACAGACAGACAT 59.119 37.500 0.00 0.00 0.00 3.06
2131 5222 6.150318 CACGTTCATACAGACAGTCTAAACT 58.850 40.000 1.67 0.00 35.60 2.66
2153 5244 2.231235 AGCAAATTCAAATCCCGTCCAC 59.769 45.455 0.00 0.00 0.00 4.02
2173 5264 5.757850 ACACTTTCAAGGCTTCAGTTAAG 57.242 39.130 0.00 0.00 38.32 1.85
2177 5268 4.423625 AGTACACTTTCAAGGCTTCAGT 57.576 40.909 0.00 0.00 0.00 3.41
2209 5307 3.490078 CCTGCTCACGAAATAGAGTCTCC 60.490 52.174 0.00 0.00 34.39 3.71
2231 5329 1.737793 ACGCGTCAAGAATGGGAAATC 59.262 47.619 5.58 0.00 0.00 2.17
2237 5569 3.863424 ACATACTAACGCGTCAAGAATGG 59.137 43.478 23.63 8.20 0.00 3.16
2254 5586 5.059404 ACAACTGGCTGCAAATTACATAC 57.941 39.130 0.50 0.00 0.00 2.39
2255 5587 4.157656 GGACAACTGGCTGCAAATTACATA 59.842 41.667 0.50 0.00 0.00 2.29
2256 5588 3.056607 GGACAACTGGCTGCAAATTACAT 60.057 43.478 0.50 0.00 0.00 2.29
2257 5589 2.295909 GGACAACTGGCTGCAAATTACA 59.704 45.455 0.50 0.00 0.00 2.41
2334 5676 2.166664 GAGAGAGGTTGATTGCCTACGT 59.833 50.000 0.00 0.00 36.29 3.57
2347 5689 4.625083 GCAATTAGGCAGAAAGAGAGAGGT 60.625 45.833 0.00 0.00 0.00 3.85
2349 5691 4.511527 TGCAATTAGGCAGAAAGAGAGAG 58.488 43.478 0.00 0.00 39.25 3.20
2350 5692 4.558226 TGCAATTAGGCAGAAAGAGAGA 57.442 40.909 0.00 0.00 39.25 3.10
2355 5697 4.998500 TGCCCATGCAATTAGGCAGAAAG 61.998 47.826 15.80 0.00 45.54 2.62
2356 5698 3.151795 TGCCCATGCAATTAGGCAGAAA 61.152 45.455 15.80 0.00 45.54 2.52
2357 5699 1.619160 TGCCCATGCAATTAGGCAGAA 60.619 47.619 15.80 0.00 45.54 3.02
2358 5700 0.033306 TGCCCATGCAATTAGGCAGA 60.033 50.000 15.80 0.00 45.54 4.26
2359 5701 2.507213 TGCCCATGCAATTAGGCAG 58.493 52.632 15.80 0.00 45.54 4.85
2464 5968 4.223923 TGGTTGGGCTTCAAGAAAGAAAAA 59.776 37.500 0.00 0.00 37.12 1.94
2465 5969 3.772025 TGGTTGGGCTTCAAGAAAGAAAA 59.228 39.130 0.00 0.00 37.12 2.29
2466 5970 3.132111 GTGGTTGGGCTTCAAGAAAGAAA 59.868 43.478 0.00 0.00 37.12 2.52
2467 5971 2.693074 GTGGTTGGGCTTCAAGAAAGAA 59.307 45.455 0.00 0.00 37.12 2.52
2468 5972 2.306847 GTGGTTGGGCTTCAAGAAAGA 58.693 47.619 0.00 0.00 37.12 2.52
2469 5973 1.341209 GGTGGTTGGGCTTCAAGAAAG 59.659 52.381 0.00 0.00 35.80 2.62
2486 5990 2.672961 TCGAGCTAGTCCAAATGGTG 57.327 50.000 0.00 0.00 36.34 4.17
2499 6003 4.307432 TCTTTTCGTTTCTGAATCGAGCT 58.693 39.130 19.18 0.00 35.13 4.09
2500 6004 4.434857 CCTCTTTTCGTTTCTGAATCGAGC 60.435 45.833 19.18 0.00 35.13 5.03
2545 6052 2.223572 CGCAGCTTTTCCAGTTTTCAGT 60.224 45.455 0.00 0.00 0.00 3.41
2592 6103 0.107945 AAGTCGGGAAGATGCTCTGC 60.108 55.000 0.00 0.00 0.00 4.26
2721 6233 5.560724 TCTCCTAACCCAAGACAAAAGATG 58.439 41.667 0.00 0.00 0.00 2.90
2744 6256 1.073199 CTTGGTCTCGCCCAGGTTT 59.927 57.895 0.00 0.00 35.49 3.27
2749 6261 0.324738 ATCTCTCTTGGTCTCGCCCA 60.325 55.000 0.00 0.00 36.04 5.36
2777 6289 2.902705 TCAAACGGTACAGTGAAGCT 57.097 45.000 0.00 0.00 0.00 3.74
2784 6296 5.445407 CCAATACACGAATCAAACGGTACAG 60.445 44.000 0.00 0.00 34.93 2.74
2800 6312 7.617041 ACTAGCAAGAGAAAATCCAATACAC 57.383 36.000 0.00 0.00 0.00 2.90
2804 6316 7.373493 CACAAACTAGCAAGAGAAAATCCAAT 58.627 34.615 0.00 0.00 0.00 3.16
2809 6321 6.183360 ACAAGCACAAACTAGCAAGAGAAAAT 60.183 34.615 0.00 0.00 0.00 1.82
2843 6355 2.488153 CAAGAAATTTCACCCCGGAGAC 59.512 50.000 19.99 0.00 0.00 3.36
2847 6359 2.514803 AGACAAGAAATTTCACCCCGG 58.485 47.619 19.99 0.00 0.00 5.73
2863 6375 5.930837 ACAAATCCCAAGAAACAAAGACA 57.069 34.783 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.