Multiple sequence alignment - TraesCS2B01G209800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G209800 chr2B 100.000 7454 0 0 1 7454 192358982 192366435 0.000000e+00 13766.0
1 TraesCS2B01G209800 chr2B 80.300 533 76 16 1 506 229792361 229791831 7.060000e-100 375.0
2 TraesCS2B01G209800 chr2B 78.769 471 74 19 78 525 162862803 162862336 7.320000e-75 292.0
3 TraesCS2B01G209800 chr2B 77.778 495 91 13 34 525 141702661 141702183 3.400000e-73 287.0
4 TraesCS2B01G209800 chr2B 88.235 68 4 4 557 621 687226491 687226425 2.230000e-10 78.7
5 TraesCS2B01G209800 chr2A 93.985 5553 258 49 1945 7454 143210207 143215726 0.000000e+00 8335.0
6 TraesCS2B01G209800 chr2A 93.238 976 34 9 997 1946 143209178 143210147 0.000000e+00 1408.0
7 TraesCS2B01G209800 chr2A 97.133 279 4 3 647 923 143208695 143208971 1.130000e-127 468.0
8 TraesCS2B01G209800 chr2A 90.323 62 4 1 533 594 763023239 763023180 6.200000e-11 80.5
9 TraesCS2B01G209800 chr2D 92.803 3140 148 39 642 3725 135281698 135284815 0.000000e+00 4475.0
10 TraesCS2B01G209800 chr2D 94.981 2570 108 10 3739 6295 135285202 135287763 0.000000e+00 4012.0
11 TraesCS2B01G209800 chr2D 96.502 629 20 2 6828 7454 135307509 135308137 0.000000e+00 1038.0
12 TraesCS2B01G209800 chr2D 95.756 542 20 2 6289 6829 135306846 135307385 0.000000e+00 870.0
13 TraesCS2B01G209800 chr2D 77.634 541 92 25 1 525 555482127 555482654 1.220000e-77 302.0
14 TraesCS2B01G209800 chr2D 83.553 152 22 3 7 158 112089142 112089290 1.010000e-28 139.0
15 TraesCS2B01G209800 chr2D 94.318 88 5 0 3739 3826 135284992 135285079 1.300000e-27 135.0
16 TraesCS2B01G209800 chr2D 88.312 77 6 3 541 616 616561358 616561284 1.030000e-13 89.8
17 TraesCS2B01G209800 chrUn 97.382 382 10 0 3739 4120 480096665 480096284 0.000000e+00 651.0
18 TraesCS2B01G209800 chr1B 79.259 540 90 17 1 525 65343593 65344125 2.560000e-94 357.0
19 TraesCS2B01G209800 chr1B 78.095 525 98 11 12 525 526619082 526618564 4.340000e-82 316.0
20 TraesCS2B01G209800 chr6D 80.000 505 80 15 1 495 451622714 451623207 3.310000e-93 353.0
21 TraesCS2B01G209800 chr7B 78.897 526 89 12 1 504 581804747 581805272 3.330000e-88 337.0
22 TraesCS2B01G209800 chr7B 84.524 84 7 5 536 615 614542509 614542590 2.230000e-10 78.7
23 TraesCS2B01G209800 chr7B 89.062 64 6 1 554 616 673996159 673996222 2.230000e-10 78.7
24 TraesCS2B01G209800 chr3A 78.764 518 84 18 1 495 480973295 480973809 2.590000e-84 324.0
25 TraesCS2B01G209800 chr6A 81.598 413 49 20 95 495 103295593 103295990 4.340000e-82 316.0
26 TraesCS2B01G209800 chr4A 80.476 420 67 10 119 525 41011957 41012374 2.610000e-79 307.0
27 TraesCS2B01G209800 chr1D 79.630 162 20 11 1 152 182055666 182055508 3.680000e-18 104.0
28 TraesCS2B01G209800 chr5A 90.164 61 5 1 557 616 387581683 387581623 2.230000e-10 78.7
29 TraesCS2B01G209800 chr5B 88.889 63 6 1 554 615 130917018 130917080 8.020000e-10 76.8
30 TraesCS2B01G209800 chr1A 90.000 60 5 1 557 615 168567575 168567516 8.020000e-10 76.8
31 TraesCS2B01G209800 chr6B 86.765 68 7 2 518 584 710004752 710004818 2.880000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G209800 chr2B 192358982 192366435 7453 False 13766.000000 13766 100.000000 1 7454 1 chr2B.!!$F1 7453
1 TraesCS2B01G209800 chr2B 229791831 229792361 530 True 375.000000 375 80.300000 1 506 1 chr2B.!!$R3 505
2 TraesCS2B01G209800 chr2A 143208695 143215726 7031 False 3403.666667 8335 94.785333 647 7454 3 chr2A.!!$F1 6807
3 TraesCS2B01G209800 chr2D 135281698 135287763 6065 False 2874.000000 4475 94.034000 642 6295 3 chr2D.!!$F3 5653
4 TraesCS2B01G209800 chr2D 135306846 135308137 1291 False 954.000000 1038 96.129000 6289 7454 2 chr2D.!!$F4 1165
5 TraesCS2B01G209800 chr2D 555482127 555482654 527 False 302.000000 302 77.634000 1 525 1 chr2D.!!$F2 524
6 TraesCS2B01G209800 chr1B 65343593 65344125 532 False 357.000000 357 79.259000 1 525 1 chr1B.!!$F1 524
7 TraesCS2B01G209800 chr1B 526618564 526619082 518 True 316.000000 316 78.095000 12 525 1 chr1B.!!$R1 513
8 TraesCS2B01G209800 chr7B 581804747 581805272 525 False 337.000000 337 78.897000 1 504 1 chr7B.!!$F1 503
9 TraesCS2B01G209800 chr3A 480973295 480973809 514 False 324.000000 324 78.764000 1 495 1 chr3A.!!$F1 494


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.039256 CATGGTGTGAAGGCGTTTGG 60.039 55.000 0.00 0.00 0.00 3.28 F
633 680 0.105246 ACCCAAAATGCCCTGGAACA 60.105 50.000 0.00 0.00 34.35 3.18 F
1452 1652 0.106708 TGCTGACAGGGTGAGTGAAC 59.893 55.000 4.26 0.00 0.00 3.18 F
1981 2258 0.109342 ATGGTCCATTGATCCGAGGC 59.891 55.000 0.00 0.00 0.00 4.70 F
2044 2321 0.304705 CTGTCAACGGCACACAGAAC 59.695 55.000 0.00 0.00 40.07 3.01 F
3544 3864 0.514691 GCAGCCTTTGTGAAGTCGAG 59.485 55.000 0.00 0.00 0.00 4.04 F
3877 4572 1.468914 GCCCTTTTCTTGGTAAGCTCG 59.531 52.381 0.00 0.00 0.00 5.03 F
5770 6481 0.966875 TGGCAATGACATGGTCAGCC 60.967 55.000 17.78 17.78 46.94 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 2244 0.319900 CTACGGCCTCGGATCAATGG 60.320 60.000 0.00 0.00 41.39 3.16 R
2032 2309 0.029300 CTTTGTGGTTCTGTGTGCCG 59.971 55.000 0.00 0.00 0.00 5.69 R
3339 3659 2.211250 AGCATCAGCAACCTCATGTT 57.789 45.000 0.00 0.00 45.49 2.71 R
3511 3831 0.968405 GGCTGCAGAAAAACATCCCA 59.032 50.000 20.43 0.00 0.00 4.37 R
3782 4477 1.736681 GAGCCACTGTTGAGATTGAGC 59.263 52.381 0.00 0.00 0.00 4.26 R
4464 5160 0.041839 GTAATGGAATCGCTGCGCTG 60.042 55.000 18.65 10.04 0.00 5.18 R
5871 6582 1.066858 CGGTACAAGTGCAGATCAGGT 60.067 52.381 0.00 0.00 0.00 4.00 R
7054 7896 1.210234 TCCGTACCTGTCGACTGGATA 59.790 52.381 38.57 25.72 38.22 2.59 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.039256 CATGGTGTGAAGGCGTTTGG 60.039 55.000 0.00 0.00 0.00 3.28
44 45 3.064271 ACAAAGCGCGTAAGAACAAAAGA 59.936 39.130 8.43 0.00 43.02 2.52
49 50 3.608474 GCGCGTAAGAACAAAAGATTGGT 60.608 43.478 8.43 0.00 39.82 3.67
57 58 4.469586 AGAACAAAAGATTGGTGTGGGTTT 59.530 37.500 0.00 0.00 36.33 3.27
60 61 5.205056 ACAAAAGATTGGTGTGGGTTTAGA 58.795 37.500 0.00 0.00 41.01 2.10
90 91 4.142049 GGGATAACAGAGGTCAGACAAGAG 60.142 50.000 2.17 0.00 0.00 2.85
126 149 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
128 151 7.657354 AGAAGAAGAAGAAGAAGAAGAAGAAGC 59.343 37.037 0.00 0.00 0.00 3.86
129 152 6.825610 AGAAGAAGAAGAAGAAGAAGAAGCA 58.174 36.000 0.00 0.00 0.00 3.91
130 153 6.705825 AGAAGAAGAAGAAGAAGAAGAAGCAC 59.294 38.462 0.00 0.00 0.00 4.40
132 155 6.352516 AGAAGAAGAAGAAGAAGAAGCACAA 58.647 36.000 0.00 0.00 0.00 3.33
133 156 6.259829 AGAAGAAGAAGAAGAAGAAGCACAAC 59.740 38.462 0.00 0.00 0.00 3.32
135 161 5.882557 AGAAGAAGAAGAAGAAGCACAACAA 59.117 36.000 0.00 0.00 0.00 2.83
162 193 6.730507 AGAAGAAGAAGAAGAGGAAGAGGAAT 59.269 38.462 0.00 0.00 0.00 3.01
163 194 6.544928 AGAAGAAGAAGAGGAAGAGGAATC 57.455 41.667 0.00 0.00 0.00 2.52
164 195 6.022315 AGAAGAAGAAGAGGAAGAGGAATCA 58.978 40.000 0.00 0.00 0.00 2.57
168 199 6.939730 AGAAGAAGAGGAAGAGGAATCAAAAC 59.060 38.462 0.00 0.00 0.00 2.43
169 200 5.565509 AGAAGAGGAAGAGGAATCAAAACC 58.434 41.667 0.00 0.00 0.00 3.27
170 201 5.073691 AGAAGAGGAAGAGGAATCAAAACCA 59.926 40.000 0.00 0.00 0.00 3.67
176 207 5.948758 GGAAGAGGAATCAAAACCAGAAGAT 59.051 40.000 0.00 0.00 0.00 2.40
199 230 3.764237 TGGACTTCCACCTAGTTGAAC 57.236 47.619 0.00 0.00 42.01 3.18
240 280 8.784043 CCATATTGGCTCTTAATAACTTGTACC 58.216 37.037 0.00 0.00 0.00 3.34
272 312 8.357290 TGCTAGTAGTTAGGATAAACTGTCAA 57.643 34.615 0.00 0.00 39.95 3.18
284 324 9.574516 AGGATAAACTGTCAATTGTTTTCTAGT 57.425 29.630 5.13 0.16 37.53 2.57
292 332 8.378172 TGTCAATTGTTTTCTAGTTAGGACAG 57.622 34.615 5.13 0.00 0.00 3.51
326 368 2.701423 TGTGTGGTAAGGTCACTGCTAA 59.299 45.455 0.00 0.00 36.21 3.09
348 390 7.381948 GCTAATGAGAAGTAGTGATCACATCTG 59.618 40.741 27.02 12.51 0.00 2.90
404 446 5.968848 GTGTAACAACAACGACACATTCAAT 59.031 36.000 0.00 0.00 41.46 2.57
473 520 4.505191 GCAGGCAAGCAAATTACATACATG 59.495 41.667 0.00 0.00 0.00 3.21
507 554 7.870509 TTATTCTGCATTAGCTCAAACAGAT 57.129 32.000 9.44 4.58 42.74 2.90
518 565 6.059787 AGCTCAAACAGATCCAACTAAGAT 57.940 37.500 0.00 0.00 0.00 2.40
536 583 9.804758 AACTAAGATAAGTATTCTTTCTGTCCG 57.195 33.333 0.00 0.00 35.36 4.79
537 584 8.414778 ACTAAGATAAGTATTCTTTCTGTCCGG 58.585 37.037 0.00 0.00 35.36 5.14
538 585 7.419711 AAGATAAGTATTCTTTCTGTCCGGA 57.580 36.000 0.00 0.00 35.36 5.14
539 586 7.419711 AGATAAGTATTCTTTCTGTCCGGAA 57.580 36.000 5.23 0.00 35.36 4.30
540 587 7.848128 AGATAAGTATTCTTTCTGTCCGGAAA 58.152 34.615 5.23 0.00 35.36 3.13
541 588 8.319146 AGATAAGTATTCTTTCTGTCCGGAAAA 58.681 33.333 5.23 2.03 35.22 2.29
542 589 6.803154 AAGTATTCTTTCTGTCCGGAAAAG 57.197 37.500 17.50 17.50 35.22 2.27
543 590 4.695928 AGTATTCTTTCTGTCCGGAAAAGC 59.304 41.667 18.43 7.85 35.22 3.51
544 591 2.930826 TCTTTCTGTCCGGAAAAGCT 57.069 45.000 18.43 0.00 35.22 3.74
545 592 3.208747 TCTTTCTGTCCGGAAAAGCTT 57.791 42.857 18.43 0.00 35.22 3.74
546 593 2.878406 TCTTTCTGTCCGGAAAAGCTTG 59.122 45.455 18.43 8.04 35.22 4.01
547 594 2.341846 TTCTGTCCGGAAAAGCTTGT 57.658 45.000 5.23 0.00 0.00 3.16
548 595 2.341846 TCTGTCCGGAAAAGCTTGTT 57.658 45.000 5.23 0.00 0.00 2.83
549 596 2.218603 TCTGTCCGGAAAAGCTTGTTC 58.781 47.619 5.23 6.29 0.00 3.18
550 597 1.266989 CTGTCCGGAAAAGCTTGTTCC 59.733 52.381 21.20 21.20 41.08 3.62
551 598 0.596577 GTCCGGAAAAGCTTGTTCCC 59.403 55.000 23.32 12.82 41.39 3.97
552 599 0.538746 TCCGGAAAAGCTTGTTCCCC 60.539 55.000 23.32 8.28 41.39 4.81
553 600 0.539669 CCGGAAAAGCTTGTTCCCCT 60.540 55.000 23.32 0.00 41.39 4.79
554 601 1.271707 CCGGAAAAGCTTGTTCCCCTA 60.272 52.381 23.32 0.00 41.39 3.53
555 602 2.510613 CGGAAAAGCTTGTTCCCCTAA 58.489 47.619 23.32 0.00 41.39 2.69
556 603 3.089284 CGGAAAAGCTTGTTCCCCTAAT 58.911 45.455 23.32 0.00 41.39 1.73
557 604 3.119495 CGGAAAAGCTTGTTCCCCTAATG 60.119 47.826 23.32 12.02 41.39 1.90
558 605 3.368427 GGAAAAGCTTGTTCCCCTAATGC 60.368 47.826 20.80 0.00 38.95 3.56
559 606 2.907458 AAGCTTGTTCCCCTAATGCT 57.093 45.000 0.00 0.00 0.00 3.79
560 607 4.316025 AAAGCTTGTTCCCCTAATGCTA 57.684 40.909 0.00 0.00 0.00 3.49
561 608 3.567478 AGCTTGTTCCCCTAATGCTAG 57.433 47.619 0.00 0.00 0.00 3.42
562 609 3.115390 AGCTTGTTCCCCTAATGCTAGA 58.885 45.455 0.00 0.00 0.00 2.43
563 610 3.718956 AGCTTGTTCCCCTAATGCTAGAT 59.281 43.478 0.00 0.00 0.00 1.98
564 611 4.907875 AGCTTGTTCCCCTAATGCTAGATA 59.092 41.667 0.00 0.00 0.00 1.98
565 612 4.998033 GCTTGTTCCCCTAATGCTAGATAC 59.002 45.833 0.00 0.00 0.00 2.24
566 613 5.454755 GCTTGTTCCCCTAATGCTAGATACA 60.455 44.000 0.00 0.00 0.00 2.29
567 614 6.745474 GCTTGTTCCCCTAATGCTAGATACAT 60.745 42.308 0.00 0.00 0.00 2.29
568 615 6.360370 TGTTCCCCTAATGCTAGATACATC 57.640 41.667 0.00 0.00 0.00 3.06
569 616 5.248477 TGTTCCCCTAATGCTAGATACATCC 59.752 44.000 0.00 0.00 0.00 3.51
570 617 5.023514 TCCCCTAATGCTAGATACATCCA 57.976 43.478 0.00 0.00 0.00 3.41
571 618 5.603750 TCCCCTAATGCTAGATACATCCAT 58.396 41.667 0.00 0.00 0.00 3.41
572 619 6.032039 TCCCCTAATGCTAGATACATCCATT 58.968 40.000 0.00 0.00 0.00 3.16
573 620 6.505344 TCCCCTAATGCTAGATACATCCATTT 59.495 38.462 0.00 0.00 0.00 2.32
574 621 6.600822 CCCCTAATGCTAGATACATCCATTTG 59.399 42.308 0.00 0.00 0.00 2.32
575 622 7.397221 CCCTAATGCTAGATACATCCATTTGA 58.603 38.462 0.00 0.00 0.00 2.69
576 623 7.551974 CCCTAATGCTAGATACATCCATTTGAG 59.448 40.741 0.00 0.00 0.00 3.02
577 624 7.551974 CCTAATGCTAGATACATCCATTTGAGG 59.448 40.741 0.00 0.00 0.00 3.86
578 625 5.233083 TGCTAGATACATCCATTTGAGGG 57.767 43.478 0.00 0.00 0.00 4.30
579 626 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
580 627 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
581 628 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
582 629 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
583 630 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
584 631 5.429762 AGATACATCCATTTGAGGGACAAGA 59.570 40.000 0.00 0.00 39.77 3.02
585 632 4.598036 ACATCCATTTGAGGGACAAGAT 57.402 40.909 0.00 0.00 39.77 2.40
586 633 4.939255 ACATCCATTTGAGGGACAAGATT 58.061 39.130 0.00 0.00 39.77 2.40
587 634 4.708421 ACATCCATTTGAGGGACAAGATTG 59.292 41.667 0.00 0.00 39.77 2.67
588 635 4.656100 TCCATTTGAGGGACAAGATTGA 57.344 40.909 0.00 0.00 39.77 2.57
589 636 4.592942 TCCATTTGAGGGACAAGATTGAG 58.407 43.478 0.00 0.00 39.77 3.02
590 637 4.289410 TCCATTTGAGGGACAAGATTGAGA 59.711 41.667 0.00 0.00 39.77 3.27
591 638 4.397417 CCATTTGAGGGACAAGATTGAGAC 59.603 45.833 0.00 0.00 39.77 3.36
592 639 4.705110 TTTGAGGGACAAGATTGAGACA 57.295 40.909 0.00 0.00 39.77 3.41
593 640 4.705110 TTGAGGGACAAGATTGAGACAA 57.295 40.909 0.00 0.00 34.20 3.18
594 641 4.705110 TGAGGGACAAGATTGAGACAAA 57.295 40.909 0.00 0.00 0.00 2.83
595 642 5.246981 TGAGGGACAAGATTGAGACAAAT 57.753 39.130 0.00 0.00 0.00 2.32
596 643 5.634118 TGAGGGACAAGATTGAGACAAATT 58.366 37.500 0.00 0.00 0.00 1.82
597 644 6.070656 TGAGGGACAAGATTGAGACAAATTT 58.929 36.000 0.00 0.00 0.00 1.82
598 645 6.550854 TGAGGGACAAGATTGAGACAAATTTT 59.449 34.615 0.00 0.00 0.00 1.82
599 646 7.069826 TGAGGGACAAGATTGAGACAAATTTTT 59.930 33.333 0.00 0.00 0.00 1.94
616 663 2.845363 TTTTTGACGGGGAGAGTACC 57.155 50.000 0.00 0.00 0.00 3.34
626 673 1.763968 GGAGAGTACCCAAAATGCCC 58.236 55.000 0.00 0.00 0.00 5.36
627 674 1.285078 GGAGAGTACCCAAAATGCCCT 59.715 52.381 0.00 0.00 0.00 5.19
628 675 2.369394 GAGAGTACCCAAAATGCCCTG 58.631 52.381 0.00 0.00 0.00 4.45
629 676 1.005924 AGAGTACCCAAAATGCCCTGG 59.994 52.381 0.00 0.00 0.00 4.45
630 677 1.005450 GAGTACCCAAAATGCCCTGGA 59.995 52.381 0.00 0.00 34.35 3.86
631 678 1.431243 AGTACCCAAAATGCCCTGGAA 59.569 47.619 0.00 0.00 34.35 3.53
632 679 1.548719 GTACCCAAAATGCCCTGGAAC 59.451 52.381 0.00 0.00 34.35 3.62
633 680 0.105246 ACCCAAAATGCCCTGGAACA 60.105 50.000 0.00 0.00 34.35 3.18
634 681 1.055040 CCCAAAATGCCCTGGAACAA 58.945 50.000 0.00 0.00 38.70 2.83
635 682 1.419387 CCCAAAATGCCCTGGAACAAA 59.581 47.619 0.00 0.00 38.70 2.83
636 683 2.493035 CCAAAATGCCCTGGAACAAAC 58.507 47.619 0.00 0.00 38.70 2.93
637 684 2.158842 CCAAAATGCCCTGGAACAAACA 60.159 45.455 0.00 0.00 38.70 2.83
638 685 2.871633 CAAAATGCCCTGGAACAAACAC 59.128 45.455 0.00 0.00 38.70 3.32
639 686 0.673437 AATGCCCTGGAACAAACACG 59.327 50.000 0.00 0.00 38.70 4.49
640 687 0.467290 ATGCCCTGGAACAAACACGT 60.467 50.000 0.00 0.00 38.70 4.49
641 688 1.358759 GCCCTGGAACAAACACGTG 59.641 57.895 15.48 15.48 38.70 4.49
642 689 1.098712 GCCCTGGAACAAACACGTGA 61.099 55.000 25.01 0.00 38.70 4.35
643 690 1.384525 CCCTGGAACAAACACGTGAA 58.615 50.000 25.01 0.00 38.70 3.18
644 691 1.064952 CCCTGGAACAAACACGTGAAC 59.935 52.381 25.01 6.24 38.70 3.18
645 692 1.064952 CCTGGAACAAACACGTGAACC 59.935 52.381 25.01 14.88 38.70 3.62
652 699 3.570559 ACAAACACGTGAACCAAACAAG 58.429 40.909 25.01 2.31 0.00 3.16
659 706 2.602217 CGTGAACCAAACAAGCAGCTAC 60.602 50.000 0.00 0.00 0.00 3.58
678 727 1.133792 ACACCAAAGGTCACTGGGAAG 60.134 52.381 0.00 0.00 37.00 3.46
719 770 3.054503 CAGTGACAGGCAGGCAGC 61.055 66.667 0.00 0.00 34.37 5.25
752 803 4.100084 CCCGGTCCAGCATGCAGA 62.100 66.667 21.98 13.56 31.97 4.26
753 804 2.513204 CCGGTCCAGCATGCAGAG 60.513 66.667 21.98 9.16 31.97 3.35
1103 1303 2.029964 GTTCCGTTCCGTCAGGCA 59.970 61.111 0.00 0.00 37.47 4.75
1147 1347 4.329545 TGGTTGTCAGGGGCGAGC 62.330 66.667 0.00 0.00 0.00 5.03
1350 1550 2.027625 CGTCTTCTTCGCGCCCTTT 61.028 57.895 0.00 0.00 0.00 3.11
1410 1610 6.720288 GGCTCTACACTCCTCTGGTAATTATA 59.280 42.308 0.00 0.00 0.00 0.98
1447 1647 0.397941 TTCCTTGCTGACAGGGTGAG 59.602 55.000 4.26 0.00 43.47 3.51
1452 1652 0.106708 TGCTGACAGGGTGAGTGAAC 59.893 55.000 4.26 0.00 0.00 3.18
1511 1727 1.707106 CTGCATGATGGGCCCATTAA 58.293 50.000 37.69 28.12 36.70 1.40
1654 1870 1.019805 GGGTGGTACAAGCTCGCTTC 61.020 60.000 0.31 0.00 44.16 3.86
1725 1941 1.816835 CTGCAAGTCATTGTCCTGCAT 59.183 47.619 7.47 0.00 38.76 3.96
1762 1978 8.877808 AAATTTTGCTTTCTTCTCAAGGTTAG 57.122 30.769 0.00 0.00 0.00 2.34
1878 2094 5.011125 TCTGTACTCTTAGTGCTTCTTTGCT 59.989 40.000 0.00 0.00 31.77 3.91
1886 2102 3.225104 AGTGCTTCTTTGCTCAATCCAA 58.775 40.909 0.00 0.00 0.00 3.53
1927 2143 5.221048 GGCAGTTCAGAATTTGTACACTGTT 60.221 40.000 10.11 0.00 35.10 3.16
1939 2155 1.687563 ACACTGTTTGGTTGGTAGGC 58.312 50.000 0.00 0.00 0.00 3.93
1958 2235 7.012610 TGGTAGGCTTTTGTAACTCTGTTTAAC 59.987 37.037 0.00 0.00 0.00 2.01
1967 2244 7.642071 TGTAACTCTGTTTAACGTTATGGTC 57.358 36.000 9.18 1.34 0.00 4.02
1981 2258 0.109342 ATGGTCCATTGATCCGAGGC 59.891 55.000 0.00 0.00 0.00 4.70
2020 2297 3.699894 CCTCTGGGCTGACGCTGT 61.700 66.667 0.00 0.00 36.09 4.40
2021 2298 2.433838 CTCTGGGCTGACGCTGTG 60.434 66.667 0.00 0.00 36.09 3.66
2022 2299 3.231889 CTCTGGGCTGACGCTGTGT 62.232 63.158 0.00 0.00 36.09 3.72
2030 2307 2.354656 GACGCTGTGTCGCTGTCA 60.355 61.111 5.50 0.00 37.96 3.58
2031 2308 1.949133 GACGCTGTGTCGCTGTCAA 60.949 57.895 5.50 0.00 37.96 3.18
2032 2309 2.147204 GACGCTGTGTCGCTGTCAAC 62.147 60.000 5.50 0.00 37.96 3.18
2033 2310 2.546321 GCTGTGTCGCTGTCAACG 59.454 61.111 0.00 0.00 0.00 4.10
2034 2311 2.943345 GCTGTGTCGCTGTCAACGG 61.943 63.158 0.00 0.00 0.00 4.44
2035 2312 2.943345 CTGTGTCGCTGTCAACGGC 61.943 63.158 3.80 3.80 44.53 5.68
2042 2319 4.436515 CTGTCAACGGCACACAGA 57.563 55.556 0.00 0.00 40.07 3.41
2043 2320 2.689083 CTGTCAACGGCACACAGAA 58.311 52.632 0.00 0.00 40.07 3.02
2044 2321 0.304705 CTGTCAACGGCACACAGAAC 59.695 55.000 0.00 0.00 40.07 3.01
2045 2322 1.092921 TGTCAACGGCACACAGAACC 61.093 55.000 0.00 0.00 0.00 3.62
2046 2323 1.092921 GTCAACGGCACACAGAACCA 61.093 55.000 0.00 0.00 0.00 3.67
2047 2324 1.092921 TCAACGGCACACAGAACCAC 61.093 55.000 0.00 0.00 0.00 4.16
2048 2325 1.078072 AACGGCACACAGAACCACA 60.078 52.632 0.00 0.00 0.00 4.17
2064 2341 6.093219 CAGAACCACAAAGATAATGGTGAGAG 59.907 42.308 0.00 0.00 46.18 3.20
2065 2342 5.762179 ACCACAAAGATAATGGTGAGAGA 57.238 39.130 0.00 0.00 45.15 3.10
2066 2343 6.319048 ACCACAAAGATAATGGTGAGAGAT 57.681 37.500 0.00 0.00 45.15 2.75
2067 2344 7.437713 ACCACAAAGATAATGGTGAGAGATA 57.562 36.000 0.00 0.00 45.15 1.98
2068 2345 7.504403 ACCACAAAGATAATGGTGAGAGATAG 58.496 38.462 0.00 0.00 45.15 2.08
2069 2346 7.345653 ACCACAAAGATAATGGTGAGAGATAGA 59.654 37.037 0.00 0.00 45.15 1.98
2137 2448 2.299013 TGGCTACACAAGACTGTACTGG 59.701 50.000 4.66 0.00 32.57 4.00
2145 2456 2.016905 AGACTGTACTGGAAGGCTGT 57.983 50.000 4.66 0.00 39.30 4.40
2149 2460 4.081420 AGACTGTACTGGAAGGCTGTAATG 60.081 45.833 4.66 0.00 39.30 1.90
2150 2461 3.838317 ACTGTACTGGAAGGCTGTAATGA 59.162 43.478 4.66 0.00 39.30 2.57
2153 2464 5.815581 TGTACTGGAAGGCTGTAATGAAAT 58.184 37.500 0.00 0.00 39.30 2.17
2154 2465 6.953101 TGTACTGGAAGGCTGTAATGAAATA 58.047 36.000 0.00 0.00 39.30 1.40
2155 2466 7.047891 TGTACTGGAAGGCTGTAATGAAATAG 58.952 38.462 0.00 0.00 39.30 1.73
2156 2467 6.313519 ACTGGAAGGCTGTAATGAAATAGA 57.686 37.500 0.00 0.00 39.30 1.98
2221 2535 5.483937 TCCTGCCTAAGAACATAAAGACTGA 59.516 40.000 0.00 0.00 0.00 3.41
2297 2611 8.755028 GGTTAATCCCCACATTACAGTTTAATT 58.245 33.333 0.00 0.00 0.00 1.40
2303 2617 6.884295 CCCCACATTACAGTTTAATTGAGAGA 59.116 38.462 0.00 0.00 0.00 3.10
2306 2620 9.388506 CCACATTACAGTTTAATTGAGAGAGAT 57.611 33.333 0.00 0.00 0.00 2.75
2462 2776 7.526041 AGGTAATGTTATATCCTGCAAATGGA 58.474 34.615 0.00 0.00 38.06 3.41
2769 3084 3.718434 TCAGGGAATCATGGTCTGCTTAT 59.282 43.478 0.00 0.00 0.00 1.73
2969 3288 9.874215 GATAACACCTTTTCACTACAGTTAAAC 57.126 33.333 0.00 0.00 0.00 2.01
3076 3396 5.808366 ATCTATTCAGCAGAACCCGATTA 57.192 39.130 0.00 0.00 36.39 1.75
3102 3422 5.982890 ATTTACTTAGCACTGCAATGGTT 57.017 34.783 4.73 0.00 0.00 3.67
3103 3423 7.175816 TGAATTTACTTAGCACTGCAATGGTTA 59.824 33.333 4.73 0.00 0.00 2.85
3125 3445 7.865889 GGTTAAAGCAGCTGTTTAACTTAACAT 59.134 33.333 33.57 17.46 44.49 2.71
3143 3463 8.440833 ACTTAACATCTGATAAAAGCGTGTAAC 58.559 33.333 0.00 0.00 0.00 2.50
3211 3531 2.419198 GCGACGGATCCAGCAGAT 59.581 61.111 13.41 0.00 38.17 2.90
3312 3632 4.695455 AGGTGTTTCAGATGTTGGATTACG 59.305 41.667 0.00 0.00 0.00 3.18
3339 3659 3.835395 GAGGGAACTGGAGAAAAGAGAGA 59.165 47.826 0.00 0.00 44.43 3.10
3364 3684 3.954200 TGAGGTTGCTGATGCTAATGAA 58.046 40.909 0.00 0.00 40.48 2.57
3440 3760 8.682936 TTTCTCTGCATTTCTCCTTATATTCC 57.317 34.615 0.00 0.00 0.00 3.01
3499 3819 3.890313 TGGTCCTCTGAGCAGCAA 58.110 55.556 0.00 0.00 43.72 3.91
3511 3831 2.038164 TGAGCAGCAAGACAGTGAAGAT 59.962 45.455 0.00 0.00 0.00 2.40
3544 3864 0.514691 GCAGCCTTTGTGAAGTCGAG 59.485 55.000 0.00 0.00 0.00 4.04
3685 4005 2.483877 GACGGTTTTGATCATCACTGCA 59.516 45.455 11.77 0.00 0.00 4.41
3701 4021 2.027192 ACTGCAGGGTAACATACACCTG 60.027 50.000 19.93 15.16 43.77 4.00
3737 4220 9.887629 ATCTCTTTATATATGGTCATGAGCAAG 57.112 33.333 29.58 20.02 42.53 4.01
3749 4234 6.716628 TGGTCATGAGCAAGTCTTCTTATTTT 59.283 34.615 24.64 0.00 35.69 1.82
3750 4235 7.882791 TGGTCATGAGCAAGTCTTCTTATTTTA 59.117 33.333 24.64 0.00 35.69 1.52
3877 4572 1.468914 GCCCTTTTCTTGGTAAGCTCG 59.531 52.381 0.00 0.00 0.00 5.03
3991 4686 4.881273 TCAACTGCATTCTACAACACAGTT 59.119 37.500 0.00 0.00 46.26 3.16
4005 4700 6.208644 ACAACACAGTTGTTCTTATGCATTC 58.791 36.000 3.54 0.00 44.57 2.67
4008 4703 5.412594 ACACAGTTGTTCTTATGCATTCGAT 59.587 36.000 3.54 0.00 28.43 3.59
4300 4995 7.600065 AGTGCTAAGTGTTTTACTCGATCTTA 58.400 34.615 0.00 0.00 39.18 2.10
4469 5165 3.623960 TGTAACCATTGTTATACCAGCGC 59.376 43.478 0.00 0.00 39.08 5.92
4470 5166 2.411628 ACCATTGTTATACCAGCGCA 57.588 45.000 11.47 0.00 0.00 6.09
4471 5167 2.288666 ACCATTGTTATACCAGCGCAG 58.711 47.619 11.47 0.00 0.00 5.18
4472 5168 5.034365 AACCATTGTTATACCAGCGCAGC 62.034 47.826 11.47 0.00 44.52 5.25
4557 5256 7.926018 ACCTCACTCAAATATTTTGTGGAAAAC 59.074 33.333 19.25 0.00 33.86 2.43
4643 5342 6.164408 TGAGCAAACAACTGTTATATCACG 57.836 37.500 0.00 0.00 37.25 4.35
4651 5350 4.336889 ACTGTTATATCACGGGTCCATG 57.663 45.455 1.10 0.00 0.00 3.66
4653 5352 4.593206 ACTGTTATATCACGGGTCCATGAT 59.407 41.667 11.52 11.52 38.99 2.45
4666 5365 6.017440 ACGGGTCCATGATTTTTATGTTATCG 60.017 38.462 0.00 0.00 0.00 2.92
4695 5394 5.979517 ACTGATAAACTGCAAAGAAAACAGC 59.020 36.000 0.00 0.00 34.72 4.40
4706 5406 5.414535 CAAAGAAAACAGCGAAAATGAACG 58.585 37.500 0.00 0.00 0.00 3.95
4715 5415 5.640357 ACAGCGAAAATGAACGGATTACTTA 59.360 36.000 0.00 0.00 0.00 2.24
4836 5539 3.998913 TTGATGCAGGGAATCAGTACA 57.001 42.857 0.00 0.00 35.54 2.90
5027 5730 2.695666 AGGTGAGAACCCTACATCATCG 59.304 50.000 0.00 0.00 0.00 3.84
5165 5872 6.237901 TGTGGTGAAGTAATCATAGCTGTTT 58.762 36.000 0.00 0.00 40.97 2.83
5304 6012 3.945346 AGTTCCGCACACATGGTTATAA 58.055 40.909 0.00 0.00 0.00 0.98
5412 6123 2.158900 CGTTATTCCATCAGAGGCTGGT 60.159 50.000 0.00 0.00 34.03 4.00
5577 6288 2.897326 GTCCAAGGTTTTAGTGCCCATT 59.103 45.455 0.00 0.00 0.00 3.16
5584 6295 6.079712 AGGTTTTAGTGCCCATTAGAAGAT 57.920 37.500 0.00 0.00 0.00 2.40
5586 6297 7.816411 AGGTTTTAGTGCCCATTAGAAGATAT 58.184 34.615 0.00 0.00 0.00 1.63
5592 6303 7.805083 AGTGCCCATTAGAAGATATGAGTAT 57.195 36.000 0.00 0.00 0.00 2.12
5649 6360 3.806157 GCATGAGCAGCAGGATTGATCTA 60.806 47.826 0.00 0.00 41.58 1.98
5663 6374 7.021873 AGGATTGATCTAGGACCTGATAACAT 58.978 38.462 3.53 0.00 0.00 2.71
5664 6375 7.038445 AGGATTGATCTAGGACCTGATAACATG 60.038 40.741 3.53 0.00 0.00 3.21
5666 6377 6.656632 TGATCTAGGACCTGATAACATGAC 57.343 41.667 3.53 0.00 0.00 3.06
5667 6378 5.540337 TGATCTAGGACCTGATAACATGACC 59.460 44.000 3.53 0.00 0.00 4.02
5709 6420 1.969923 CCCCATGGTGATCTCTCTCTC 59.030 57.143 11.73 0.00 0.00 3.20
5712 6423 3.069872 CCCATGGTGATCTCTCTCTCAAG 59.930 52.174 11.73 0.00 0.00 3.02
5718 6429 3.023119 TGATCTCTCTCTCAAGCCTGTC 58.977 50.000 0.00 0.00 0.00 3.51
5721 6432 1.515952 CTCTCTCAAGCCTGTCGCG 60.516 63.158 0.00 0.00 44.76 5.87
5730 6441 2.604046 AGCCTGTCGCGAAAATATCT 57.396 45.000 12.06 0.19 44.76 1.98
5731 6442 3.728076 AGCCTGTCGCGAAAATATCTA 57.272 42.857 12.06 0.00 44.76 1.98
5739 6450 4.681942 GTCGCGAAAATATCTACAGATGCT 59.318 41.667 12.06 0.00 36.05 3.79
5745 6456 7.433719 GCGAAAATATCTACAGATGCTATCGAT 59.566 37.037 2.16 2.16 36.05 3.59
5756 6467 6.101997 CAGATGCTATCGATAGTAATGGCAA 58.898 40.000 28.47 9.50 39.52 4.52
5769 6480 1.108776 ATGGCAATGACATGGTCAGC 58.891 50.000 0.00 3.98 46.04 4.26
5770 6481 0.966875 TGGCAATGACATGGTCAGCC 60.967 55.000 17.78 17.78 46.94 4.85
5838 6549 1.577328 CTGCATCTTCCGCCAACGTT 61.577 55.000 0.00 0.00 37.70 3.99
5863 6574 1.001815 GCTCGTCTCCAGATAGCAGTC 60.002 57.143 8.34 0.00 36.52 3.51
5884 6595 1.911357 TGGATTCACCTGATCTGCACT 59.089 47.619 0.00 0.00 39.86 4.40
6193 6904 3.011708 AGACCCAAGAATGTAAATGGCCT 59.988 43.478 3.32 0.00 0.00 5.19
6203 6914 0.893270 TAAATGGCCTGCAGCGTGTT 60.893 50.000 8.66 0.71 45.17 3.32
6287 6998 7.015682 TGCATTTTTGGAATTTGGTAAGGTAGA 59.984 33.333 0.00 0.00 0.00 2.59
6310 7021 7.510630 AGAGAATGTAGAATTGTTTCGTTTCG 58.489 34.615 0.00 0.00 36.93 3.46
6333 7044 0.036875 GGGGCTCAAGTGCTTGTAGT 59.963 55.000 11.17 0.00 41.16 2.73
6398 7109 1.580059 TCTATCAGGGCCTCGGTTTT 58.420 50.000 0.95 0.00 0.00 2.43
6512 7225 1.025041 GCATAGTTGGCAACTAGGGC 58.975 55.000 37.73 34.98 46.32 5.19
6526 7239 3.036091 ACTAGGGCGTCTTAGGCATTAA 58.964 45.455 11.16 0.00 38.57 1.40
6527 7240 2.622064 AGGGCGTCTTAGGCATTAAG 57.378 50.000 0.00 1.82 40.16 1.85
6529 7242 2.504175 AGGGCGTCTTAGGCATTAAGAA 59.496 45.455 10.44 0.00 46.99 2.52
6531 7244 3.883489 GGGCGTCTTAGGCATTAAGAAAT 59.117 43.478 10.44 0.00 46.99 2.17
6532 7245 4.261197 GGGCGTCTTAGGCATTAAGAAATG 60.261 45.833 10.44 6.37 46.99 2.32
6623 7338 7.675962 ACGTCCTGATATAAGTACTCTGATC 57.324 40.000 0.00 0.00 0.00 2.92
6683 7398 8.500753 ACACACTAAGTAGATCTGAGACTAAG 57.499 38.462 5.18 0.00 0.00 2.18
6718 7433 2.309528 TATTGGACGGCACATGAGAC 57.690 50.000 0.00 0.00 0.00 3.36
6730 7445 3.519579 CACATGAGACAAGGTCAGCTAG 58.480 50.000 0.00 0.00 34.60 3.42
6759 7474 4.761739 TCAATTCTGCTTTGGTTAGTGGAG 59.238 41.667 0.00 0.00 0.00 3.86
6776 7491 5.300752 AGTGGAGATCAAATTATGCTACCG 58.699 41.667 0.00 0.00 0.00 4.02
6829 7669 6.070021 TGTGATTGGTCAGATTCAGAACCTAT 60.070 38.462 0.00 0.00 34.36 2.57
6899 7739 4.036852 GGGATTTTCAGGCTAACTATGTGC 59.963 45.833 0.00 0.00 0.00 4.57
6942 7783 7.224557 AGTGAAATTGCACCTGTAATGTTTTTC 59.775 33.333 13.26 0.00 39.59 2.29
6972 7813 7.395772 TCAATTTATCAATTACCTTGCACAGGA 59.604 33.333 18.22 1.60 36.97 3.86
7054 7896 1.080705 GTAGCTGTCGGTGCGAAGT 60.081 57.895 0.00 0.00 37.72 3.01
7070 7912 2.941064 CGAAGTATCCAGTCGACAGGTA 59.059 50.000 24.41 14.13 36.92 3.08
7078 7921 0.535780 AGTCGACAGGTACGGACACA 60.536 55.000 19.50 0.00 0.00 3.72
7233 8076 6.434340 GTGTTCCTGATCTAAGGTTGGAAAAT 59.566 38.462 0.00 0.00 38.58 1.82
7296 8139 2.864931 CGCCTCGAGAAAGCATCGC 61.865 63.158 15.71 4.91 39.98 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.042475 GTTCTTACGCGCTTTGTTGC 58.958 50.000 5.73 0.00 0.00 4.17
30 31 5.212194 CCACACCAATCTTTTGTTCTTACG 58.788 41.667 0.00 0.00 0.00 3.18
32 33 5.205056 ACCCACACCAATCTTTTGTTCTTA 58.795 37.500 0.00 0.00 0.00 2.10
44 45 5.656416 CCATATTGTCTAAACCCACACCAAT 59.344 40.000 0.00 0.00 0.00 3.16
49 50 5.725551 ATCCCATATTGTCTAAACCCACA 57.274 39.130 0.00 0.00 0.00 4.17
57 58 7.073208 TGACCTCTGTTATCCCATATTGTCTA 58.927 38.462 0.00 0.00 0.00 2.59
60 61 5.905331 TCTGACCTCTGTTATCCCATATTGT 59.095 40.000 0.00 0.00 0.00 2.71
90 91 8.141268 TCTTCTTCTTCTTCTTCTTCTTCAGAC 58.859 37.037 0.00 0.00 0.00 3.51
126 149 4.517285 TCTTCTTCTTCTGTTGTTGTGCT 58.483 39.130 0.00 0.00 0.00 4.40
128 151 6.238320 CCTCTTCTTCTTCTTCTGTTGTTGTG 60.238 42.308 0.00 0.00 0.00 3.33
129 152 5.819901 CCTCTTCTTCTTCTTCTGTTGTTGT 59.180 40.000 0.00 0.00 0.00 3.32
130 153 6.051717 TCCTCTTCTTCTTCTTCTGTTGTTG 58.948 40.000 0.00 0.00 0.00 3.33
132 155 5.878406 TCCTCTTCTTCTTCTTCTGTTGT 57.122 39.130 0.00 0.00 0.00 3.32
133 156 6.520272 TCTTCCTCTTCTTCTTCTTCTGTTG 58.480 40.000 0.00 0.00 0.00 3.33
135 161 5.245977 CCTCTTCCTCTTCTTCTTCTTCTGT 59.754 44.000 0.00 0.00 0.00 3.41
162 193 5.246981 AGTCCATCATCTTCTGGTTTTGA 57.753 39.130 0.00 0.00 34.03 2.69
163 194 5.105997 GGAAGTCCATCATCTTCTGGTTTTG 60.106 44.000 0.00 0.00 39.67 2.44
164 195 5.012893 GGAAGTCCATCATCTTCTGGTTTT 58.987 41.667 0.00 0.00 39.67 2.43
168 199 3.920231 TGGAAGTCCATCATCTTCTGG 57.080 47.619 0.00 0.00 42.01 3.86
196 227 7.428826 CAATATGGCTGAATAGGGAAAAGTTC 58.571 38.462 0.00 0.00 0.00 3.01
197 228 6.324770 CCAATATGGCTGAATAGGGAAAAGTT 59.675 38.462 0.00 0.00 0.00 2.66
198 229 5.835280 CCAATATGGCTGAATAGGGAAAAGT 59.165 40.000 0.00 0.00 0.00 2.66
199 230 6.336842 CCAATATGGCTGAATAGGGAAAAG 57.663 41.667 0.00 0.00 0.00 2.27
272 312 8.974060 TTGTTCTGTCCTAACTAGAAAACAAT 57.026 30.769 0.00 0.00 32.76 2.71
284 324 5.527214 CACACTGAACATTGTTCTGTCCTAA 59.473 40.000 28.65 10.10 0.00 2.69
292 332 5.493133 TTACCACACACTGAACATTGTTC 57.507 39.130 20.27 20.27 0.00 3.18
326 368 7.435305 CATCAGATGTGATCACTACTTCTCAT 58.565 38.462 25.55 11.95 41.85 2.90
382 424 6.195868 TGATTGAATGTGTCGTTGTTGTTAC 58.804 36.000 0.00 0.00 0.00 2.50
400 442 6.627395 ATTTCTACCACGTTGTTTGATTGA 57.373 33.333 0.00 0.00 0.00 2.57
404 446 4.336993 AGCAATTTCTACCACGTTGTTTGA 59.663 37.500 0.00 0.00 0.00 2.69
486 533 4.637534 GGATCTGTTTGAGCTAATGCAGAA 59.362 41.667 12.45 0.92 42.74 3.02
487 534 4.194640 GGATCTGTTTGAGCTAATGCAGA 58.805 43.478 11.30 11.30 42.74 4.26
518 565 6.370718 GCTTTTCCGGACAGAAAGAATACTTA 59.629 38.462 24.77 0.00 37.09 2.24
525 572 2.878406 CAAGCTTTTCCGGACAGAAAGA 59.122 45.455 24.77 0.00 37.09 2.52
526 573 2.618709 ACAAGCTTTTCCGGACAGAAAG 59.381 45.455 18.77 18.77 37.09 2.62
527 574 2.650322 ACAAGCTTTTCCGGACAGAAA 58.350 42.857 1.83 0.74 33.98 2.52
528 575 2.341846 ACAAGCTTTTCCGGACAGAA 57.658 45.000 1.83 0.00 0.00 3.02
529 576 2.218603 GAACAAGCTTTTCCGGACAGA 58.781 47.619 1.83 0.00 0.00 3.41
530 577 1.266989 GGAACAAGCTTTTCCGGACAG 59.733 52.381 18.44 4.22 33.46 3.51
531 578 1.314730 GGAACAAGCTTTTCCGGACA 58.685 50.000 18.44 0.00 33.46 4.02
532 579 0.596577 GGGAACAAGCTTTTCCGGAC 59.403 55.000 22.86 12.78 43.20 4.79
533 580 0.538746 GGGGAACAAGCTTTTCCGGA 60.539 55.000 22.86 0.00 43.20 5.14
534 581 0.539669 AGGGGAACAAGCTTTTCCGG 60.540 55.000 22.86 0.00 43.20 5.14
535 582 2.194201 TAGGGGAACAAGCTTTTCCG 57.806 50.000 22.86 7.03 43.20 4.30
536 583 3.368427 GCATTAGGGGAACAAGCTTTTCC 60.368 47.826 22.22 22.22 41.76 3.13
537 584 3.511540 AGCATTAGGGGAACAAGCTTTTC 59.488 43.478 0.00 4.58 0.00 2.29
538 585 3.510459 AGCATTAGGGGAACAAGCTTTT 58.490 40.909 0.00 0.00 0.00 2.27
539 586 3.175438 AGCATTAGGGGAACAAGCTTT 57.825 42.857 0.00 0.00 0.00 3.51
540 587 2.907458 AGCATTAGGGGAACAAGCTT 57.093 45.000 0.00 0.00 0.00 3.74
541 588 3.115390 TCTAGCATTAGGGGAACAAGCT 58.885 45.455 0.00 0.00 34.84 3.74
542 589 3.560636 TCTAGCATTAGGGGAACAAGC 57.439 47.619 0.00 0.00 0.00 4.01
543 590 6.174720 TGTATCTAGCATTAGGGGAACAAG 57.825 41.667 0.00 0.00 0.00 3.16
544 591 6.239887 GGATGTATCTAGCATTAGGGGAACAA 60.240 42.308 0.00 0.00 0.00 2.83
545 592 5.248477 GGATGTATCTAGCATTAGGGGAACA 59.752 44.000 0.00 0.00 0.00 3.18
546 593 5.248477 TGGATGTATCTAGCATTAGGGGAAC 59.752 44.000 0.00 0.00 0.00 3.62
547 594 5.411493 TGGATGTATCTAGCATTAGGGGAA 58.589 41.667 0.00 0.00 0.00 3.97
548 595 5.023514 TGGATGTATCTAGCATTAGGGGA 57.976 43.478 0.00 0.00 0.00 4.81
549 596 5.965033 ATGGATGTATCTAGCATTAGGGG 57.035 43.478 0.00 0.00 0.00 4.79
550 597 7.397221 TCAAATGGATGTATCTAGCATTAGGG 58.603 38.462 0.00 0.00 0.00 3.53
551 598 7.551974 CCTCAAATGGATGTATCTAGCATTAGG 59.448 40.741 0.00 0.00 0.00 2.69
552 599 7.551974 CCCTCAAATGGATGTATCTAGCATTAG 59.448 40.741 0.00 0.00 0.00 1.73
553 600 7.237471 TCCCTCAAATGGATGTATCTAGCATTA 59.763 37.037 0.00 0.00 0.00 1.90
554 601 6.044754 TCCCTCAAATGGATGTATCTAGCATT 59.955 38.462 0.00 0.00 0.00 3.56
555 602 5.549228 TCCCTCAAATGGATGTATCTAGCAT 59.451 40.000 0.00 0.00 0.00 3.79
556 603 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
557 604 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
558 605 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
559 606 6.615316 TCTTGTCCCTCAAATGGATGTATCTA 59.385 38.462 0.00 0.00 35.48 1.98
560 607 5.429762 TCTTGTCCCTCAAATGGATGTATCT 59.570 40.000 0.00 0.00 35.48 1.98
561 608 5.684704 TCTTGTCCCTCAAATGGATGTATC 58.315 41.667 0.00 0.00 35.48 2.24
562 609 5.715439 TCTTGTCCCTCAAATGGATGTAT 57.285 39.130 0.00 0.00 35.48 2.29
563 610 5.715439 ATCTTGTCCCTCAAATGGATGTA 57.285 39.130 0.00 0.00 35.48 2.29
564 611 4.598036 ATCTTGTCCCTCAAATGGATGT 57.402 40.909 0.00 0.00 35.48 3.06
565 612 4.951715 TCAATCTTGTCCCTCAAATGGATG 59.048 41.667 0.00 0.00 35.48 3.51
566 613 5.044624 TCTCAATCTTGTCCCTCAAATGGAT 60.045 40.000 0.00 0.00 35.48 3.41
567 614 4.289410 TCTCAATCTTGTCCCTCAAATGGA 59.711 41.667 0.00 0.00 35.48 3.41
568 615 4.397417 GTCTCAATCTTGTCCCTCAAATGG 59.603 45.833 0.00 0.00 35.48 3.16
569 616 5.005740 TGTCTCAATCTTGTCCCTCAAATG 58.994 41.667 0.00 0.00 35.48 2.32
570 617 5.246981 TGTCTCAATCTTGTCCCTCAAAT 57.753 39.130 0.00 0.00 35.48 2.32
571 618 4.705110 TGTCTCAATCTTGTCCCTCAAA 57.295 40.909 0.00 0.00 35.48 2.69
572 619 4.705110 TTGTCTCAATCTTGTCCCTCAA 57.295 40.909 0.00 0.00 34.61 3.02
573 620 4.705110 TTTGTCTCAATCTTGTCCCTCA 57.295 40.909 0.00 0.00 0.00 3.86
574 621 6.581171 AAATTTGTCTCAATCTTGTCCCTC 57.419 37.500 0.00 0.00 0.00 4.30
575 622 6.983906 AAAATTTGTCTCAATCTTGTCCCT 57.016 33.333 0.00 0.00 0.00 4.20
597 644 1.348696 GGGTACTCTCCCCGTCAAAAA 59.651 52.381 0.00 0.00 41.54 1.94
598 645 0.978907 GGGTACTCTCCCCGTCAAAA 59.021 55.000 0.00 0.00 41.54 2.44
599 646 0.178926 TGGGTACTCTCCCCGTCAAA 60.179 55.000 0.00 0.00 45.86 2.69
600 647 0.178926 TTGGGTACTCTCCCCGTCAA 60.179 55.000 0.00 0.00 45.86 3.18
601 648 0.178926 TTTGGGTACTCTCCCCGTCA 60.179 55.000 0.00 0.00 45.86 4.35
602 649 0.978907 TTTTGGGTACTCTCCCCGTC 59.021 55.000 0.00 0.00 45.86 4.79
603 650 1.280998 CATTTTGGGTACTCTCCCCGT 59.719 52.381 0.00 0.00 45.86 5.28
604 651 2.017113 GCATTTTGGGTACTCTCCCCG 61.017 57.143 0.00 0.00 45.86 5.73
605 652 1.685180 GGCATTTTGGGTACTCTCCCC 60.685 57.143 0.00 0.00 46.48 4.81
607 654 1.285078 AGGGCATTTTGGGTACTCTCC 59.715 52.381 0.00 0.00 0.00 3.71
608 655 2.369394 CAGGGCATTTTGGGTACTCTC 58.631 52.381 0.00 0.00 0.00 3.20
609 656 1.005924 CCAGGGCATTTTGGGTACTCT 59.994 52.381 0.00 0.00 0.00 3.24
610 657 1.005450 TCCAGGGCATTTTGGGTACTC 59.995 52.381 0.00 0.00 35.13 2.59
611 658 1.080638 TCCAGGGCATTTTGGGTACT 58.919 50.000 0.00 0.00 35.13 2.73
612 659 1.548719 GTTCCAGGGCATTTTGGGTAC 59.451 52.381 0.00 0.00 35.13 3.34
613 660 1.148027 TGTTCCAGGGCATTTTGGGTA 59.852 47.619 0.00 0.00 35.13 3.69
614 661 0.105246 TGTTCCAGGGCATTTTGGGT 60.105 50.000 0.00 0.00 35.13 4.51
615 662 1.055040 TTGTTCCAGGGCATTTTGGG 58.945 50.000 0.00 0.00 35.13 4.12
616 663 2.158842 TGTTTGTTCCAGGGCATTTTGG 60.159 45.455 0.00 0.00 35.74 3.28
617 664 2.871633 GTGTTTGTTCCAGGGCATTTTG 59.128 45.455 0.00 0.00 0.00 2.44
618 665 2.482839 CGTGTTTGTTCCAGGGCATTTT 60.483 45.455 0.00 0.00 0.00 1.82
619 666 1.068434 CGTGTTTGTTCCAGGGCATTT 59.932 47.619 0.00 0.00 0.00 2.32
620 667 0.673437 CGTGTTTGTTCCAGGGCATT 59.327 50.000 0.00 0.00 0.00 3.56
621 668 0.467290 ACGTGTTTGTTCCAGGGCAT 60.467 50.000 0.00 0.00 0.00 4.40
622 669 1.077357 ACGTGTTTGTTCCAGGGCA 60.077 52.632 0.00 0.00 0.00 5.36
623 670 1.098712 TCACGTGTTTGTTCCAGGGC 61.099 55.000 16.51 0.00 0.00 5.19
624 671 1.064952 GTTCACGTGTTTGTTCCAGGG 59.935 52.381 16.51 0.00 0.00 4.45
625 672 1.064952 GGTTCACGTGTTTGTTCCAGG 59.935 52.381 16.51 0.00 0.00 4.45
626 673 1.740585 TGGTTCACGTGTTTGTTCCAG 59.259 47.619 16.51 0.00 0.00 3.86
627 674 1.822506 TGGTTCACGTGTTTGTTCCA 58.177 45.000 16.51 12.49 0.00 3.53
628 675 2.918600 GTTTGGTTCACGTGTTTGTTCC 59.081 45.455 16.51 10.23 0.00 3.62
629 676 3.566523 TGTTTGGTTCACGTGTTTGTTC 58.433 40.909 16.51 3.25 0.00 3.18
630 677 3.644884 TGTTTGGTTCACGTGTTTGTT 57.355 38.095 16.51 0.00 0.00 2.83
631 678 3.570559 CTTGTTTGGTTCACGTGTTTGT 58.429 40.909 16.51 0.00 0.00 2.83
632 679 2.344142 GCTTGTTTGGTTCACGTGTTTG 59.656 45.455 16.51 0.00 0.00 2.93
633 680 2.029828 TGCTTGTTTGGTTCACGTGTTT 60.030 40.909 16.51 0.00 0.00 2.83
634 681 1.542030 TGCTTGTTTGGTTCACGTGTT 59.458 42.857 16.51 0.00 0.00 3.32
635 682 1.132262 CTGCTTGTTTGGTTCACGTGT 59.868 47.619 16.51 0.00 0.00 4.49
636 683 1.826327 CTGCTTGTTTGGTTCACGTG 58.174 50.000 9.94 9.94 0.00 4.49
637 684 0.100503 GCTGCTTGTTTGGTTCACGT 59.899 50.000 0.00 0.00 0.00 4.49
638 685 0.381801 AGCTGCTTGTTTGGTTCACG 59.618 50.000 0.00 0.00 0.00 4.35
639 686 2.357637 TGTAGCTGCTTGTTTGGTTCAC 59.642 45.455 7.79 0.00 0.00 3.18
640 687 2.357637 GTGTAGCTGCTTGTTTGGTTCA 59.642 45.455 7.79 0.00 0.00 3.18
641 688 2.287608 GGTGTAGCTGCTTGTTTGGTTC 60.288 50.000 7.79 0.00 0.00 3.62
642 689 1.681264 GGTGTAGCTGCTTGTTTGGTT 59.319 47.619 7.79 0.00 0.00 3.67
643 690 1.318576 GGTGTAGCTGCTTGTTTGGT 58.681 50.000 7.79 0.00 0.00 3.67
644 691 1.317613 TGGTGTAGCTGCTTGTTTGG 58.682 50.000 7.79 0.00 0.00 3.28
645 692 3.374745 CTTTGGTGTAGCTGCTTGTTTG 58.625 45.455 7.79 0.00 0.00 2.93
652 699 0.875059 GTGACCTTTGGTGTAGCTGC 59.125 55.000 0.00 0.00 35.25 5.25
659 706 1.609208 CTTCCCAGTGACCTTTGGTG 58.391 55.000 0.00 0.00 35.25 4.17
691 742 1.762522 CTGTCACTGTGGGGCTCAGT 61.763 60.000 8.11 0.00 45.43 3.41
692 743 1.004080 CTGTCACTGTGGGGCTCAG 60.004 63.158 8.11 5.88 38.68 3.35
719 770 2.567049 GGGTGACCGACTGACTCG 59.433 66.667 0.00 0.00 43.64 4.18
1005 1195 4.567747 GGCCTTTCCAGGAATCAAGAAGTA 60.568 45.833 1.58 0.00 44.19 2.24
1103 1303 3.368948 GGCTGAGAGAAGACGGAAGAAAT 60.369 47.826 0.00 0.00 0.00 2.17
1410 1610 3.334054 GAGGGGGCAGGCAAGAGT 61.334 66.667 0.00 0.00 0.00 3.24
1447 1647 1.358759 CAAACCACAGGGCGTTCAC 59.641 57.895 0.00 0.00 37.90 3.18
1525 1741 4.097218 GGCACTTCCCCCAAGTTC 57.903 61.111 0.00 0.00 43.38 3.01
1654 1870 0.970937 TGGCCAGAAGACTACCCTCG 60.971 60.000 0.00 0.00 0.00 4.63
1725 1941 4.657436 AGCAAAATTTACCAACCACGAA 57.343 36.364 0.00 0.00 0.00 3.85
1762 1978 3.436243 AGTAGCCCTCATATACTGCTCC 58.564 50.000 0.00 0.00 33.63 4.70
1878 2094 6.152661 CCAAAGGTACTGCTAAATTGGATTGA 59.847 38.462 0.00 0.00 40.86 2.57
1886 2102 3.245264 ACTGCCCAAAGGTACTGCTAAAT 60.245 43.478 0.00 0.00 40.86 1.40
1927 2143 4.538738 AGTTACAAAAGCCTACCAACCAA 58.461 39.130 0.00 0.00 0.00 3.67
1939 2155 9.377383 CCATAACGTTAAACAGAGTTACAAAAG 57.623 33.333 12.81 0.00 32.76 2.27
1958 2235 3.059884 CTCGGATCAATGGACCATAACG 58.940 50.000 7.59 8.40 0.00 3.18
1967 2244 0.319900 CTACGGCCTCGGATCAATGG 60.320 60.000 0.00 0.00 41.39 3.16
2006 2283 2.740055 GACACAGCGTCAGCCCAG 60.740 66.667 0.00 0.00 46.67 4.45
2017 2294 2.943345 GCCGTTGACAGCGACACAG 61.943 63.158 13.70 0.00 0.00 3.66
2018 2295 2.964925 GCCGTTGACAGCGACACA 60.965 61.111 13.70 0.00 0.00 3.72
2019 2296 2.964925 TGCCGTTGACAGCGACAC 60.965 61.111 13.70 3.10 0.00 3.67
2020 2297 2.964925 GTGCCGTTGACAGCGACA 60.965 61.111 13.70 4.74 0.00 4.35
2021 2298 2.964925 TGTGCCGTTGACAGCGAC 60.965 61.111 13.70 1.59 0.00 5.19
2022 2299 2.964925 GTGTGCCGTTGACAGCGA 60.965 61.111 13.70 0.00 0.00 4.93
2026 2303 1.092921 GGTTCTGTGTGCCGTTGACA 61.093 55.000 0.00 0.00 0.00 3.58
2028 2305 1.092921 GTGGTTCTGTGTGCCGTTGA 61.093 55.000 0.00 0.00 0.00 3.18
2029 2306 1.355210 GTGGTTCTGTGTGCCGTTG 59.645 57.895 0.00 0.00 0.00 4.10
2030 2307 0.678366 TTGTGGTTCTGTGTGCCGTT 60.678 50.000 0.00 0.00 0.00 4.44
2031 2308 0.678366 TTTGTGGTTCTGTGTGCCGT 60.678 50.000 0.00 0.00 0.00 5.68
2032 2309 0.029300 CTTTGTGGTTCTGTGTGCCG 59.971 55.000 0.00 0.00 0.00 5.69
2033 2310 1.388547 TCTTTGTGGTTCTGTGTGCC 58.611 50.000 0.00 0.00 0.00 5.01
2034 2311 4.829064 TTATCTTTGTGGTTCTGTGTGC 57.171 40.909 0.00 0.00 0.00 4.57
2035 2312 5.241506 ACCATTATCTTTGTGGTTCTGTGTG 59.758 40.000 0.00 0.00 43.44 3.82
2036 2313 5.241506 CACCATTATCTTTGTGGTTCTGTGT 59.758 40.000 0.00 0.00 43.44 3.72
2037 2314 5.473162 TCACCATTATCTTTGTGGTTCTGTG 59.527 40.000 0.00 0.00 43.44 3.66
2038 2315 5.630121 TCACCATTATCTTTGTGGTTCTGT 58.370 37.500 0.00 0.00 43.44 3.41
2039 2316 5.939883 TCTCACCATTATCTTTGTGGTTCTG 59.060 40.000 0.00 0.00 43.44 3.02
2040 2317 6.013379 TCTCTCACCATTATCTTTGTGGTTCT 60.013 38.462 0.00 0.00 43.44 3.01
2041 2318 6.173339 TCTCTCACCATTATCTTTGTGGTTC 58.827 40.000 0.00 0.00 43.44 3.62
2042 2319 6.126863 TCTCTCACCATTATCTTTGTGGTT 57.873 37.500 0.00 0.00 43.44 3.67
2043 2320 5.762179 TCTCTCACCATTATCTTTGTGGT 57.238 39.130 0.00 0.00 46.72 4.16
2044 2321 7.730084 TCTATCTCTCACCATTATCTTTGTGG 58.270 38.462 0.00 0.00 38.96 4.17
2045 2322 9.775854 AATCTATCTCTCACCATTATCTTTGTG 57.224 33.333 0.00 0.00 0.00 3.33
2046 2323 9.775854 CAATCTATCTCTCACCATTATCTTTGT 57.224 33.333 0.00 0.00 0.00 2.83
2047 2324 9.993454 TCAATCTATCTCTCACCATTATCTTTG 57.007 33.333 0.00 0.00 0.00 2.77
2059 2336 7.004691 TCCGGAAACTATCAATCTATCTCTCA 58.995 38.462 0.00 0.00 0.00 3.27
2077 2388 1.970092 ATCACGTTGGTTTCCGGAAA 58.030 45.000 25.67 25.67 0.00 3.13
2137 2448 7.550906 AGACAGTTCTATTTCATTACAGCCTTC 59.449 37.037 0.00 0.00 0.00 3.46
2145 2456 6.823689 GGGCAAGAGACAGTTCTATTTCATTA 59.176 38.462 0.00 0.00 30.54 1.90
2149 2460 4.579869 TGGGCAAGAGACAGTTCTATTTC 58.420 43.478 0.00 0.00 30.54 2.17
2150 2461 4.640771 TGGGCAAGAGACAGTTCTATTT 57.359 40.909 0.00 0.00 30.54 1.40
2153 2464 4.530553 TGTATTGGGCAAGAGACAGTTCTA 59.469 41.667 0.00 0.00 29.47 2.10
2154 2465 3.327757 TGTATTGGGCAAGAGACAGTTCT 59.672 43.478 0.00 0.00 33.37 3.01
2155 2466 3.674997 TGTATTGGGCAAGAGACAGTTC 58.325 45.455 0.00 0.00 0.00 3.01
2156 2467 3.788227 TGTATTGGGCAAGAGACAGTT 57.212 42.857 0.00 0.00 0.00 3.16
2196 2510 6.013725 TCAGTCTTTATGTTCTTAGGCAGGAA 60.014 38.462 0.00 0.00 0.00 3.36
2221 2535 1.208165 CCCCAGGGTCTAGCACCTTT 61.208 60.000 4.22 0.00 45.95 3.11
2238 2552 2.672908 CCCGGTTGGTTAGGACCC 59.327 66.667 0.00 0.00 45.92 4.46
2272 2586 9.581099 CAATTAAACTGTAATGTGGGGATTAAC 57.419 33.333 0.00 0.00 0.00 2.01
2342 2656 5.561679 GGAAAGATAGGACCACAAGAAACT 58.438 41.667 0.00 0.00 0.00 2.66
2350 2664 3.640029 TGGTATCGGAAAGATAGGACCAC 59.360 47.826 0.00 0.00 39.39 4.16
2462 2776 8.718656 AGAAGTAAAGAATAATGCAGGGATAGT 58.281 33.333 0.00 0.00 0.00 2.12
2620 2935 5.178252 GCCACTCTGTAATACATGCATACAG 59.822 44.000 17.01 17.01 44.97 2.74
2626 2941 4.478843 CATGCCACTCTGTAATACATGC 57.521 45.455 0.00 0.00 0.00 4.06
3052 3372 5.808366 ATCGGGTTCTGCTGAATAGATTA 57.192 39.130 9.40 0.00 34.40 1.75
3070 3390 7.072030 GCAGTGCTAAGTAAATTCATAATCGG 58.928 38.462 8.18 0.00 0.00 4.18
3076 3396 6.153340 ACCATTGCAGTGCTAAGTAAATTCAT 59.847 34.615 17.60 0.00 0.00 2.57
3125 3445 5.790593 AGAAGGTTACACGCTTTTATCAGA 58.209 37.500 0.00 0.00 0.00 3.27
3173 3493 3.402110 CAGCACACCAGATGTACAGAAA 58.598 45.455 0.33 0.00 40.64 2.52
3211 3531 3.397618 TCTTTGATTTGAAGACCCCTGGA 59.602 43.478 0.00 0.00 0.00 3.86
3271 3591 2.840651 ACCTTGTATGGACTCCTTCAGG 59.159 50.000 0.00 0.45 0.00 3.86
3274 3594 3.983044 ACACCTTGTATGGACTCCTTC 57.017 47.619 0.00 0.00 0.00 3.46
3312 3632 4.773149 TCTTTTCTCCAGTTCCCTCTAGTC 59.227 45.833 0.00 0.00 0.00 2.59
3339 3659 2.211250 AGCATCAGCAACCTCATGTT 57.789 45.000 0.00 0.00 45.49 2.71
3364 3684 6.599244 TGTTCTTCAGTTCAGTCATTGACTTT 59.401 34.615 16.64 0.90 41.37 2.66
3414 3734 9.125026 GGAATATAAGGAGAAATGCAGAGAAAA 57.875 33.333 0.00 0.00 0.00 2.29
3499 3819 4.647564 AAACATCCCATCTTCACTGTCT 57.352 40.909 0.00 0.00 0.00 3.41
3511 3831 0.968405 GGCTGCAGAAAAACATCCCA 59.032 50.000 20.43 0.00 0.00 4.37
3544 3864 3.191371 CCAGCAGGTGAAAGAAACATACC 59.809 47.826 0.00 0.00 0.00 2.73
3585 3905 5.153513 AGCAACACGTTAAATACTTGCATG 58.846 37.500 10.24 0.00 37.70 4.06
3590 3910 7.542824 ACACAAAAAGCAACACGTTAAATACTT 59.457 29.630 0.00 0.00 0.00 2.24
3719 4039 7.313740 AGAAGACTTGCTCATGACCATATAT 57.686 36.000 0.00 0.00 0.00 0.86
3773 4468 5.708697 ACTGTTGAGATTGAGCAATTCATGA 59.291 36.000 0.00 0.00 35.27 3.07
3782 4477 1.736681 GAGCCACTGTTGAGATTGAGC 59.263 52.381 0.00 0.00 0.00 4.26
3877 4572 6.341316 TCTACCAAAGCATGATAGAGAACAC 58.659 40.000 0.00 0.00 0.00 3.32
3991 4686 6.072230 TGACCAAAATCGAATGCATAAGAACA 60.072 34.615 0.00 0.00 0.00 3.18
4005 4700 5.058149 TCCAACAATGATGACCAAAATCG 57.942 39.130 0.00 0.00 0.00 3.34
4008 4703 5.384336 TCTCTCCAACAATGATGACCAAAA 58.616 37.500 0.00 0.00 0.00 2.44
4210 4905 2.223340 CCACAATGATGAAAGGCGCTAC 60.223 50.000 7.64 0.00 0.00 3.58
4265 4960 3.278574 ACACTTAGCACTTTCAACAGCA 58.721 40.909 0.00 0.00 0.00 4.41
4328 5023 0.537143 AGGATGCCTGCGTCAACAAA 60.537 50.000 12.98 0.00 33.86 2.83
4330 5025 1.672030 CAGGATGCCTGCGTCAACA 60.672 57.895 12.98 0.00 45.13 3.33
4464 5160 0.041839 GTAATGGAATCGCTGCGCTG 60.042 55.000 18.65 10.04 0.00 5.18
4469 5165 4.248859 CAGGGATAGTAATGGAATCGCTG 58.751 47.826 12.31 12.31 42.75 5.18
4470 5166 3.904339 ACAGGGATAGTAATGGAATCGCT 59.096 43.478 0.00 0.00 35.37 4.93
4471 5167 3.997021 CACAGGGATAGTAATGGAATCGC 59.003 47.826 0.00 0.00 0.00 4.58
4472 5168 3.997021 GCACAGGGATAGTAATGGAATCG 59.003 47.826 0.00 0.00 0.00 3.34
4473 5169 5.234466 AGCACAGGGATAGTAATGGAATC 57.766 43.478 0.00 0.00 0.00 2.52
4525 5224 6.431234 ACAAAATATTTGAGTGAGGTGGTCTC 59.569 38.462 9.62 0.00 42.74 3.36
4557 5256 2.221055 GGCTAAGTGTCACAAGTTCACG 59.779 50.000 5.62 0.00 37.20 4.35
4643 5342 7.272037 ACGATAACATAAAAATCATGGACCC 57.728 36.000 0.00 0.00 0.00 4.46
4666 5365 9.118236 GTTTTCTTTGCAGTTTATCAGTGATAC 57.882 33.333 12.50 5.17 0.00 2.24
4695 5394 8.944212 AAAACTAAGTAATCCGTTCATTTTCG 57.056 30.769 0.00 0.00 0.00 3.46
4747 5447 6.919662 GGCAACAATACAAACTATCCATGATG 59.080 38.462 0.00 0.00 0.00 3.07
4810 5513 3.443052 TGATTCCCTGCATCAAATTGGT 58.557 40.909 0.00 0.00 0.00 3.67
4811 5514 3.449737 ACTGATTCCCTGCATCAAATTGG 59.550 43.478 0.00 0.00 30.12 3.16
4836 5539 3.641436 TCAGGGCAATGATGTAGTCGTAT 59.359 43.478 0.00 0.00 0.00 3.06
5055 5758 1.726853 ACAGCGCCAGTTCTAATGTC 58.273 50.000 2.29 0.00 0.00 3.06
5193 5900 4.908601 AGATGTCCAAGTCATACCAACA 57.091 40.909 0.00 0.00 0.00 3.33
5241 5949 3.932545 TCGTTGCCATTTACAAATGCT 57.067 38.095 8.83 0.00 43.38 3.79
5277 5985 3.687698 ACCATGTGTGCGGAACTTATAAC 59.312 43.478 0.00 0.00 0.00 1.89
5279 5987 3.620427 ACCATGTGTGCGGAACTTATA 57.380 42.857 0.00 0.00 0.00 0.98
5282 5990 2.264005 TAACCATGTGTGCGGAACTT 57.736 45.000 0.00 0.00 0.00 2.66
5304 6012 7.015292 TGCAGAAAAGGGAATACGTCTATCTAT 59.985 37.037 0.00 0.00 0.00 1.98
5344 6054 5.353400 TGCTTCAGATTATTTGTGAGCTGAG 59.647 40.000 0.00 0.00 34.33 3.35
5412 6123 3.512329 TGGTAGCGGAGTTATGTGAAGAA 59.488 43.478 0.00 0.00 0.00 2.52
5592 6303 3.181470 TGTCTGTTTCATGACCGAGTGAA 60.181 43.478 0.00 0.00 32.86 3.18
5649 6360 3.724478 TCTGGTCATGTTATCAGGTCCT 58.276 45.455 3.94 0.00 35.36 3.85
5663 6374 4.425772 TCCTCTCCTATTTGTTCTGGTCA 58.574 43.478 0.00 0.00 0.00 4.02
5664 6375 5.422214 TTCCTCTCCTATTTGTTCTGGTC 57.578 43.478 0.00 0.00 0.00 4.02
5666 6377 4.775236 CCTTCCTCTCCTATTTGTTCTGG 58.225 47.826 0.00 0.00 0.00 3.86
5667 6378 4.195416 GCCTTCCTCTCCTATTTGTTCTG 58.805 47.826 0.00 0.00 0.00 3.02
5709 6420 2.609459 AGATATTTTCGCGACAGGCTTG 59.391 45.455 9.15 0.00 40.44 4.01
5712 6423 3.120792 TGTAGATATTTTCGCGACAGGC 58.879 45.455 9.15 0.00 38.69 4.85
5718 6429 6.290799 CGATAGCATCTGTAGATATTTTCGCG 60.291 42.308 0.00 0.00 32.63 5.87
5730 6441 6.377146 TGCCATTACTATCGATAGCATCTGTA 59.623 38.462 28.37 12.85 33.68 2.74
5731 6442 5.185828 TGCCATTACTATCGATAGCATCTGT 59.814 40.000 28.37 13.78 33.68 3.41
5739 6450 6.818142 CCATGTCATTGCCATTACTATCGATA 59.182 38.462 4.78 4.78 0.00 2.92
5745 6456 5.109500 TGACCATGTCATTGCCATTACTA 57.891 39.130 0.00 0.00 37.67 1.82
5756 6467 1.134280 GTGCTAGGCTGACCATGTCAT 60.134 52.381 0.00 0.00 41.94 3.06
5838 6549 2.234143 CTATCTGGAGACGAGCCATCA 58.766 52.381 0.00 0.00 34.33 3.07
5863 6574 2.093075 AGTGCAGATCAGGTGAATCCAG 60.093 50.000 0.00 0.00 39.02 3.86
5871 6582 1.066858 CGGTACAAGTGCAGATCAGGT 60.067 52.381 0.00 0.00 0.00 4.00
5884 6595 1.342174 GACACCTGAGAACCGGTACAA 59.658 52.381 8.00 0.00 30.91 2.41
6193 6904 1.948104 ACAAGTTAGAACACGCTGCA 58.052 45.000 0.00 0.00 0.00 4.41
6203 6914 2.158871 AGGTGGCGTCAAACAAGTTAGA 60.159 45.455 0.00 0.00 0.00 2.10
6287 6998 6.077838 GCGAAACGAAACAATTCTACATTCT 58.922 36.000 0.00 0.00 33.17 2.40
6333 7044 6.571605 TGAAATTGTCATCTCACAGCAAAAA 58.428 32.000 0.00 0.00 0.00 1.94
6398 7109 9.308318 GTAATAAGAGCAGTTTCAAAAACCAAA 57.692 29.630 0.00 0.00 0.00 3.28
6407 7118 9.809096 CTCTAAGATGTAATAAGAGCAGTTTCA 57.191 33.333 0.00 0.00 0.00 2.69
6444 7156 1.996191 GAAGCTAGCAAGTCAACCTCG 59.004 52.381 18.83 0.00 0.00 4.63
6526 7239 2.106683 GCACGGCCGTAGCATTTCT 61.107 57.895 33.23 10.13 42.56 2.52
6527 7240 2.309764 CTGCACGGCCGTAGCATTTC 62.310 60.000 37.35 20.71 42.56 2.17
6529 7242 2.593468 ATCTGCACGGCCGTAGCATT 62.593 55.000 37.35 28.96 42.56 3.56
6531 7244 3.309436 AATCTGCACGGCCGTAGCA 62.309 57.895 35.92 35.92 42.56 3.49
6532 7245 2.511600 AATCTGCACGGCCGTAGC 60.512 61.111 33.70 32.79 38.76 3.58
6623 7338 3.951680 ACTTGGTTGTGACTAAAGGGTTG 59.048 43.478 0.00 0.00 0.00 3.77
6683 7398 7.627340 CCGTCCAATATGACAGTATTTGTTAC 58.373 38.462 0.00 0.00 41.05 2.50
6718 7433 3.667497 TGACTCAACTAGCTGACCTTG 57.333 47.619 0.00 0.00 0.00 3.61
6730 7445 4.574599 ACCAAAGCAGAATTGACTCAAC 57.425 40.909 0.00 0.00 0.00 3.18
6776 7491 1.805945 CGCTGACGTGTTAGGGCTC 60.806 63.158 0.00 0.00 33.53 4.70
6942 7783 8.372521 GTGCAAGGTAATTGATAAATTGAAACG 58.627 33.333 0.00 0.00 41.83 3.60
6978 7819 5.592104 TTGAACAACCCCTTCTTTCTTTC 57.408 39.130 0.00 0.00 0.00 2.62
6982 7823 5.276461 ACATTTGAACAACCCCTTCTTTC 57.724 39.130 0.00 0.00 0.00 2.62
7054 7896 1.210234 TCCGTACCTGTCGACTGGATA 59.790 52.381 38.57 25.72 38.22 2.59
7070 7912 2.549754 CAAGATTCAGCTTTGTGTCCGT 59.450 45.455 0.00 0.00 0.00 4.69
7078 7921 2.818432 CAGGACTGCAAGATTCAGCTTT 59.182 45.455 0.00 0.00 37.43 3.51
7233 8076 9.098355 GCTGTTTTTATATGACAGATGTACTCA 57.902 33.333 12.31 0.00 42.54 3.41



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.