Multiple sequence alignment - TraesCS2B01G209800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G209800 | chr2B | 100.000 | 7454 | 0 | 0 | 1 | 7454 | 192358982 | 192366435 | 0.000000e+00 | 13766.0 |
1 | TraesCS2B01G209800 | chr2B | 80.300 | 533 | 76 | 16 | 1 | 506 | 229792361 | 229791831 | 7.060000e-100 | 375.0 |
2 | TraesCS2B01G209800 | chr2B | 78.769 | 471 | 74 | 19 | 78 | 525 | 162862803 | 162862336 | 7.320000e-75 | 292.0 |
3 | TraesCS2B01G209800 | chr2B | 77.778 | 495 | 91 | 13 | 34 | 525 | 141702661 | 141702183 | 3.400000e-73 | 287.0 |
4 | TraesCS2B01G209800 | chr2B | 88.235 | 68 | 4 | 4 | 557 | 621 | 687226491 | 687226425 | 2.230000e-10 | 78.7 |
5 | TraesCS2B01G209800 | chr2A | 93.985 | 5553 | 258 | 49 | 1945 | 7454 | 143210207 | 143215726 | 0.000000e+00 | 8335.0 |
6 | TraesCS2B01G209800 | chr2A | 93.238 | 976 | 34 | 9 | 997 | 1946 | 143209178 | 143210147 | 0.000000e+00 | 1408.0 |
7 | TraesCS2B01G209800 | chr2A | 97.133 | 279 | 4 | 3 | 647 | 923 | 143208695 | 143208971 | 1.130000e-127 | 468.0 |
8 | TraesCS2B01G209800 | chr2A | 90.323 | 62 | 4 | 1 | 533 | 594 | 763023239 | 763023180 | 6.200000e-11 | 80.5 |
9 | TraesCS2B01G209800 | chr2D | 92.803 | 3140 | 148 | 39 | 642 | 3725 | 135281698 | 135284815 | 0.000000e+00 | 4475.0 |
10 | TraesCS2B01G209800 | chr2D | 94.981 | 2570 | 108 | 10 | 3739 | 6295 | 135285202 | 135287763 | 0.000000e+00 | 4012.0 |
11 | TraesCS2B01G209800 | chr2D | 96.502 | 629 | 20 | 2 | 6828 | 7454 | 135307509 | 135308137 | 0.000000e+00 | 1038.0 |
12 | TraesCS2B01G209800 | chr2D | 95.756 | 542 | 20 | 2 | 6289 | 6829 | 135306846 | 135307385 | 0.000000e+00 | 870.0 |
13 | TraesCS2B01G209800 | chr2D | 77.634 | 541 | 92 | 25 | 1 | 525 | 555482127 | 555482654 | 1.220000e-77 | 302.0 |
14 | TraesCS2B01G209800 | chr2D | 83.553 | 152 | 22 | 3 | 7 | 158 | 112089142 | 112089290 | 1.010000e-28 | 139.0 |
15 | TraesCS2B01G209800 | chr2D | 94.318 | 88 | 5 | 0 | 3739 | 3826 | 135284992 | 135285079 | 1.300000e-27 | 135.0 |
16 | TraesCS2B01G209800 | chr2D | 88.312 | 77 | 6 | 3 | 541 | 616 | 616561358 | 616561284 | 1.030000e-13 | 89.8 |
17 | TraesCS2B01G209800 | chrUn | 97.382 | 382 | 10 | 0 | 3739 | 4120 | 480096665 | 480096284 | 0.000000e+00 | 651.0 |
18 | TraesCS2B01G209800 | chr1B | 79.259 | 540 | 90 | 17 | 1 | 525 | 65343593 | 65344125 | 2.560000e-94 | 357.0 |
19 | TraesCS2B01G209800 | chr1B | 78.095 | 525 | 98 | 11 | 12 | 525 | 526619082 | 526618564 | 4.340000e-82 | 316.0 |
20 | TraesCS2B01G209800 | chr6D | 80.000 | 505 | 80 | 15 | 1 | 495 | 451622714 | 451623207 | 3.310000e-93 | 353.0 |
21 | TraesCS2B01G209800 | chr7B | 78.897 | 526 | 89 | 12 | 1 | 504 | 581804747 | 581805272 | 3.330000e-88 | 337.0 |
22 | TraesCS2B01G209800 | chr7B | 84.524 | 84 | 7 | 5 | 536 | 615 | 614542509 | 614542590 | 2.230000e-10 | 78.7 |
23 | TraesCS2B01G209800 | chr7B | 89.062 | 64 | 6 | 1 | 554 | 616 | 673996159 | 673996222 | 2.230000e-10 | 78.7 |
24 | TraesCS2B01G209800 | chr3A | 78.764 | 518 | 84 | 18 | 1 | 495 | 480973295 | 480973809 | 2.590000e-84 | 324.0 |
25 | TraesCS2B01G209800 | chr6A | 81.598 | 413 | 49 | 20 | 95 | 495 | 103295593 | 103295990 | 4.340000e-82 | 316.0 |
26 | TraesCS2B01G209800 | chr4A | 80.476 | 420 | 67 | 10 | 119 | 525 | 41011957 | 41012374 | 2.610000e-79 | 307.0 |
27 | TraesCS2B01G209800 | chr1D | 79.630 | 162 | 20 | 11 | 1 | 152 | 182055666 | 182055508 | 3.680000e-18 | 104.0 |
28 | TraesCS2B01G209800 | chr5A | 90.164 | 61 | 5 | 1 | 557 | 616 | 387581683 | 387581623 | 2.230000e-10 | 78.7 |
29 | TraesCS2B01G209800 | chr5B | 88.889 | 63 | 6 | 1 | 554 | 615 | 130917018 | 130917080 | 8.020000e-10 | 76.8 |
30 | TraesCS2B01G209800 | chr1A | 90.000 | 60 | 5 | 1 | 557 | 615 | 168567575 | 168567516 | 8.020000e-10 | 76.8 |
31 | TraesCS2B01G209800 | chr6B | 86.765 | 68 | 7 | 2 | 518 | 584 | 710004752 | 710004818 | 2.880000e-09 | 75.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS2B01G209800 | chr2B | 192358982 | 192366435 | 7453 | False | 13766.000000 | 13766 | 100.000000 | 1 | 7454 | 1 | chr2B.!!$F1 | 7453 |
1 | TraesCS2B01G209800 | chr2B | 229791831 | 229792361 | 530 | True | 375.000000 | 375 | 80.300000 | 1 | 506 | 1 | chr2B.!!$R3 | 505 |
2 | TraesCS2B01G209800 | chr2A | 143208695 | 143215726 | 7031 | False | 3403.666667 | 8335 | 94.785333 | 647 | 7454 | 3 | chr2A.!!$F1 | 6807 |
3 | TraesCS2B01G209800 | chr2D | 135281698 | 135287763 | 6065 | False | 2874.000000 | 4475 | 94.034000 | 642 | 6295 | 3 | chr2D.!!$F3 | 5653 |
4 | TraesCS2B01G209800 | chr2D | 135306846 | 135308137 | 1291 | False | 954.000000 | 1038 | 96.129000 | 6289 | 7454 | 2 | chr2D.!!$F4 | 1165 |
5 | TraesCS2B01G209800 | chr2D | 555482127 | 555482654 | 527 | False | 302.000000 | 302 | 77.634000 | 1 | 525 | 1 | chr2D.!!$F2 | 524 |
6 | TraesCS2B01G209800 | chr1B | 65343593 | 65344125 | 532 | False | 357.000000 | 357 | 79.259000 | 1 | 525 | 1 | chr1B.!!$F1 | 524 |
7 | TraesCS2B01G209800 | chr1B | 526618564 | 526619082 | 518 | True | 316.000000 | 316 | 78.095000 | 12 | 525 | 1 | chr1B.!!$R1 | 513 |
8 | TraesCS2B01G209800 | chr7B | 581804747 | 581805272 | 525 | False | 337.000000 | 337 | 78.897000 | 1 | 504 | 1 | chr7B.!!$F1 | 503 |
9 | TraesCS2B01G209800 | chr3A | 480973295 | 480973809 | 514 | False | 324.000000 | 324 | 78.764000 | 1 | 495 | 1 | chr3A.!!$F1 | 494 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
19 | 20 | 0.039256 | CATGGTGTGAAGGCGTTTGG | 60.039 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 | F |
633 | 680 | 0.105246 | ACCCAAAATGCCCTGGAACA | 60.105 | 50.000 | 0.00 | 0.00 | 34.35 | 3.18 | F |
1452 | 1652 | 0.106708 | TGCTGACAGGGTGAGTGAAC | 59.893 | 55.000 | 4.26 | 0.00 | 0.00 | 3.18 | F |
1981 | 2258 | 0.109342 | ATGGTCCATTGATCCGAGGC | 59.891 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 | F |
2044 | 2321 | 0.304705 | CTGTCAACGGCACACAGAAC | 59.695 | 55.000 | 0.00 | 0.00 | 40.07 | 3.01 | F |
3544 | 3864 | 0.514691 | GCAGCCTTTGTGAAGTCGAG | 59.485 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 | F |
3877 | 4572 | 1.468914 | GCCCTTTTCTTGGTAAGCTCG | 59.531 | 52.381 | 0.00 | 0.00 | 0.00 | 5.03 | F |
5770 | 6481 | 0.966875 | TGGCAATGACATGGTCAGCC | 60.967 | 55.000 | 17.78 | 17.78 | 46.94 | 4.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1967 | 2244 | 0.319900 | CTACGGCCTCGGATCAATGG | 60.320 | 60.000 | 0.00 | 0.00 | 41.39 | 3.16 | R |
2032 | 2309 | 0.029300 | CTTTGTGGTTCTGTGTGCCG | 59.971 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 | R |
3339 | 3659 | 2.211250 | AGCATCAGCAACCTCATGTT | 57.789 | 45.000 | 0.00 | 0.00 | 45.49 | 2.71 | R |
3511 | 3831 | 0.968405 | GGCTGCAGAAAAACATCCCA | 59.032 | 50.000 | 20.43 | 0.00 | 0.00 | 4.37 | R |
3782 | 4477 | 1.736681 | GAGCCACTGTTGAGATTGAGC | 59.263 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 | R |
4464 | 5160 | 0.041839 | GTAATGGAATCGCTGCGCTG | 60.042 | 55.000 | 18.65 | 10.04 | 0.00 | 5.18 | R |
5871 | 6582 | 1.066858 | CGGTACAAGTGCAGATCAGGT | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 | R |
7054 | 7896 | 1.210234 | TCCGTACCTGTCGACTGGATA | 59.790 | 52.381 | 38.57 | 25.72 | 38.22 | 2.59 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
19 | 20 | 0.039256 | CATGGTGTGAAGGCGTTTGG | 60.039 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 |
44 | 45 | 3.064271 | ACAAAGCGCGTAAGAACAAAAGA | 59.936 | 39.130 | 8.43 | 0.00 | 43.02 | 2.52 |
49 | 50 | 3.608474 | GCGCGTAAGAACAAAAGATTGGT | 60.608 | 43.478 | 8.43 | 0.00 | 39.82 | 3.67 |
57 | 58 | 4.469586 | AGAACAAAAGATTGGTGTGGGTTT | 59.530 | 37.500 | 0.00 | 0.00 | 36.33 | 3.27 |
60 | 61 | 5.205056 | ACAAAAGATTGGTGTGGGTTTAGA | 58.795 | 37.500 | 0.00 | 0.00 | 41.01 | 2.10 |
90 | 91 | 4.142049 | GGGATAACAGAGGTCAGACAAGAG | 60.142 | 50.000 | 2.17 | 0.00 | 0.00 | 2.85 |
126 | 149 | 9.541143 | GAAGAAGAAGAAGAAGAAGAAGAAGAA | 57.459 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
128 | 151 | 7.657354 | AGAAGAAGAAGAAGAAGAAGAAGAAGC | 59.343 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
129 | 152 | 6.825610 | AGAAGAAGAAGAAGAAGAAGAAGCA | 58.174 | 36.000 | 0.00 | 0.00 | 0.00 | 3.91 |
130 | 153 | 6.705825 | AGAAGAAGAAGAAGAAGAAGAAGCAC | 59.294 | 38.462 | 0.00 | 0.00 | 0.00 | 4.40 |
132 | 155 | 6.352516 | AGAAGAAGAAGAAGAAGAAGCACAA | 58.647 | 36.000 | 0.00 | 0.00 | 0.00 | 3.33 |
133 | 156 | 6.259829 | AGAAGAAGAAGAAGAAGAAGCACAAC | 59.740 | 38.462 | 0.00 | 0.00 | 0.00 | 3.32 |
135 | 161 | 5.882557 | AGAAGAAGAAGAAGAAGCACAACAA | 59.117 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
162 | 193 | 6.730507 | AGAAGAAGAAGAAGAGGAAGAGGAAT | 59.269 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
163 | 194 | 6.544928 | AGAAGAAGAAGAGGAAGAGGAATC | 57.455 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
164 | 195 | 6.022315 | AGAAGAAGAAGAGGAAGAGGAATCA | 58.978 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
168 | 199 | 6.939730 | AGAAGAAGAGGAAGAGGAATCAAAAC | 59.060 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
169 | 200 | 5.565509 | AGAAGAGGAAGAGGAATCAAAACC | 58.434 | 41.667 | 0.00 | 0.00 | 0.00 | 3.27 |
170 | 201 | 5.073691 | AGAAGAGGAAGAGGAATCAAAACCA | 59.926 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
176 | 207 | 5.948758 | GGAAGAGGAATCAAAACCAGAAGAT | 59.051 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
199 | 230 | 3.764237 | TGGACTTCCACCTAGTTGAAC | 57.236 | 47.619 | 0.00 | 0.00 | 42.01 | 3.18 |
240 | 280 | 8.784043 | CCATATTGGCTCTTAATAACTTGTACC | 58.216 | 37.037 | 0.00 | 0.00 | 0.00 | 3.34 |
272 | 312 | 8.357290 | TGCTAGTAGTTAGGATAAACTGTCAA | 57.643 | 34.615 | 0.00 | 0.00 | 39.95 | 3.18 |
284 | 324 | 9.574516 | AGGATAAACTGTCAATTGTTTTCTAGT | 57.425 | 29.630 | 5.13 | 0.16 | 37.53 | 2.57 |
292 | 332 | 8.378172 | TGTCAATTGTTTTCTAGTTAGGACAG | 57.622 | 34.615 | 5.13 | 0.00 | 0.00 | 3.51 |
326 | 368 | 2.701423 | TGTGTGGTAAGGTCACTGCTAA | 59.299 | 45.455 | 0.00 | 0.00 | 36.21 | 3.09 |
348 | 390 | 7.381948 | GCTAATGAGAAGTAGTGATCACATCTG | 59.618 | 40.741 | 27.02 | 12.51 | 0.00 | 2.90 |
404 | 446 | 5.968848 | GTGTAACAACAACGACACATTCAAT | 59.031 | 36.000 | 0.00 | 0.00 | 41.46 | 2.57 |
473 | 520 | 4.505191 | GCAGGCAAGCAAATTACATACATG | 59.495 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
507 | 554 | 7.870509 | TTATTCTGCATTAGCTCAAACAGAT | 57.129 | 32.000 | 9.44 | 4.58 | 42.74 | 2.90 |
518 | 565 | 6.059787 | AGCTCAAACAGATCCAACTAAGAT | 57.940 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
536 | 583 | 9.804758 | AACTAAGATAAGTATTCTTTCTGTCCG | 57.195 | 33.333 | 0.00 | 0.00 | 35.36 | 4.79 |
537 | 584 | 8.414778 | ACTAAGATAAGTATTCTTTCTGTCCGG | 58.585 | 37.037 | 0.00 | 0.00 | 35.36 | 5.14 |
538 | 585 | 7.419711 | AAGATAAGTATTCTTTCTGTCCGGA | 57.580 | 36.000 | 0.00 | 0.00 | 35.36 | 5.14 |
539 | 586 | 7.419711 | AGATAAGTATTCTTTCTGTCCGGAA | 57.580 | 36.000 | 5.23 | 0.00 | 35.36 | 4.30 |
540 | 587 | 7.848128 | AGATAAGTATTCTTTCTGTCCGGAAA | 58.152 | 34.615 | 5.23 | 0.00 | 35.36 | 3.13 |
541 | 588 | 8.319146 | AGATAAGTATTCTTTCTGTCCGGAAAA | 58.681 | 33.333 | 5.23 | 2.03 | 35.22 | 2.29 |
542 | 589 | 6.803154 | AAGTATTCTTTCTGTCCGGAAAAG | 57.197 | 37.500 | 17.50 | 17.50 | 35.22 | 2.27 |
543 | 590 | 4.695928 | AGTATTCTTTCTGTCCGGAAAAGC | 59.304 | 41.667 | 18.43 | 7.85 | 35.22 | 3.51 |
544 | 591 | 2.930826 | TCTTTCTGTCCGGAAAAGCT | 57.069 | 45.000 | 18.43 | 0.00 | 35.22 | 3.74 |
545 | 592 | 3.208747 | TCTTTCTGTCCGGAAAAGCTT | 57.791 | 42.857 | 18.43 | 0.00 | 35.22 | 3.74 |
546 | 593 | 2.878406 | TCTTTCTGTCCGGAAAAGCTTG | 59.122 | 45.455 | 18.43 | 8.04 | 35.22 | 4.01 |
547 | 594 | 2.341846 | TTCTGTCCGGAAAAGCTTGT | 57.658 | 45.000 | 5.23 | 0.00 | 0.00 | 3.16 |
548 | 595 | 2.341846 | TCTGTCCGGAAAAGCTTGTT | 57.658 | 45.000 | 5.23 | 0.00 | 0.00 | 2.83 |
549 | 596 | 2.218603 | TCTGTCCGGAAAAGCTTGTTC | 58.781 | 47.619 | 5.23 | 6.29 | 0.00 | 3.18 |
550 | 597 | 1.266989 | CTGTCCGGAAAAGCTTGTTCC | 59.733 | 52.381 | 21.20 | 21.20 | 41.08 | 3.62 |
551 | 598 | 0.596577 | GTCCGGAAAAGCTTGTTCCC | 59.403 | 55.000 | 23.32 | 12.82 | 41.39 | 3.97 |
552 | 599 | 0.538746 | TCCGGAAAAGCTTGTTCCCC | 60.539 | 55.000 | 23.32 | 8.28 | 41.39 | 4.81 |
553 | 600 | 0.539669 | CCGGAAAAGCTTGTTCCCCT | 60.540 | 55.000 | 23.32 | 0.00 | 41.39 | 4.79 |
554 | 601 | 1.271707 | CCGGAAAAGCTTGTTCCCCTA | 60.272 | 52.381 | 23.32 | 0.00 | 41.39 | 3.53 |
555 | 602 | 2.510613 | CGGAAAAGCTTGTTCCCCTAA | 58.489 | 47.619 | 23.32 | 0.00 | 41.39 | 2.69 |
556 | 603 | 3.089284 | CGGAAAAGCTTGTTCCCCTAAT | 58.911 | 45.455 | 23.32 | 0.00 | 41.39 | 1.73 |
557 | 604 | 3.119495 | CGGAAAAGCTTGTTCCCCTAATG | 60.119 | 47.826 | 23.32 | 12.02 | 41.39 | 1.90 |
558 | 605 | 3.368427 | GGAAAAGCTTGTTCCCCTAATGC | 60.368 | 47.826 | 20.80 | 0.00 | 38.95 | 3.56 |
559 | 606 | 2.907458 | AAGCTTGTTCCCCTAATGCT | 57.093 | 45.000 | 0.00 | 0.00 | 0.00 | 3.79 |
560 | 607 | 4.316025 | AAAGCTTGTTCCCCTAATGCTA | 57.684 | 40.909 | 0.00 | 0.00 | 0.00 | 3.49 |
561 | 608 | 3.567478 | AGCTTGTTCCCCTAATGCTAG | 57.433 | 47.619 | 0.00 | 0.00 | 0.00 | 3.42 |
562 | 609 | 3.115390 | AGCTTGTTCCCCTAATGCTAGA | 58.885 | 45.455 | 0.00 | 0.00 | 0.00 | 2.43 |
563 | 610 | 3.718956 | AGCTTGTTCCCCTAATGCTAGAT | 59.281 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
564 | 611 | 4.907875 | AGCTTGTTCCCCTAATGCTAGATA | 59.092 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
565 | 612 | 4.998033 | GCTTGTTCCCCTAATGCTAGATAC | 59.002 | 45.833 | 0.00 | 0.00 | 0.00 | 2.24 |
566 | 613 | 5.454755 | GCTTGTTCCCCTAATGCTAGATACA | 60.455 | 44.000 | 0.00 | 0.00 | 0.00 | 2.29 |
567 | 614 | 6.745474 | GCTTGTTCCCCTAATGCTAGATACAT | 60.745 | 42.308 | 0.00 | 0.00 | 0.00 | 2.29 |
568 | 615 | 6.360370 | TGTTCCCCTAATGCTAGATACATC | 57.640 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
569 | 616 | 5.248477 | TGTTCCCCTAATGCTAGATACATCC | 59.752 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
570 | 617 | 5.023514 | TCCCCTAATGCTAGATACATCCA | 57.976 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
571 | 618 | 5.603750 | TCCCCTAATGCTAGATACATCCAT | 58.396 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
572 | 619 | 6.032039 | TCCCCTAATGCTAGATACATCCATT | 58.968 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
573 | 620 | 6.505344 | TCCCCTAATGCTAGATACATCCATTT | 59.495 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
574 | 621 | 6.600822 | CCCCTAATGCTAGATACATCCATTTG | 59.399 | 42.308 | 0.00 | 0.00 | 0.00 | 2.32 |
575 | 622 | 7.397221 | CCCTAATGCTAGATACATCCATTTGA | 58.603 | 38.462 | 0.00 | 0.00 | 0.00 | 2.69 |
576 | 623 | 7.551974 | CCCTAATGCTAGATACATCCATTTGAG | 59.448 | 40.741 | 0.00 | 0.00 | 0.00 | 3.02 |
577 | 624 | 7.551974 | CCTAATGCTAGATACATCCATTTGAGG | 59.448 | 40.741 | 0.00 | 0.00 | 0.00 | 3.86 |
578 | 625 | 5.233083 | TGCTAGATACATCCATTTGAGGG | 57.767 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
579 | 626 | 4.907269 | TGCTAGATACATCCATTTGAGGGA | 59.093 | 41.667 | 0.00 | 0.00 | 39.14 | 4.20 |
580 | 627 | 5.221722 | TGCTAGATACATCCATTTGAGGGAC | 60.222 | 44.000 | 0.00 | 0.00 | 37.23 | 4.46 |
581 | 628 | 5.221722 | GCTAGATACATCCATTTGAGGGACA | 60.222 | 44.000 | 0.00 | 0.00 | 37.23 | 4.02 |
582 | 629 | 5.715439 | AGATACATCCATTTGAGGGACAA | 57.285 | 39.130 | 0.00 | 0.00 | 37.23 | 3.18 |
583 | 630 | 5.688807 | AGATACATCCATTTGAGGGACAAG | 58.311 | 41.667 | 0.00 | 0.00 | 39.77 | 3.16 |
584 | 631 | 5.429762 | AGATACATCCATTTGAGGGACAAGA | 59.570 | 40.000 | 0.00 | 0.00 | 39.77 | 3.02 |
585 | 632 | 4.598036 | ACATCCATTTGAGGGACAAGAT | 57.402 | 40.909 | 0.00 | 0.00 | 39.77 | 2.40 |
586 | 633 | 4.939255 | ACATCCATTTGAGGGACAAGATT | 58.061 | 39.130 | 0.00 | 0.00 | 39.77 | 2.40 |
587 | 634 | 4.708421 | ACATCCATTTGAGGGACAAGATTG | 59.292 | 41.667 | 0.00 | 0.00 | 39.77 | 2.67 |
588 | 635 | 4.656100 | TCCATTTGAGGGACAAGATTGA | 57.344 | 40.909 | 0.00 | 0.00 | 39.77 | 2.57 |
589 | 636 | 4.592942 | TCCATTTGAGGGACAAGATTGAG | 58.407 | 43.478 | 0.00 | 0.00 | 39.77 | 3.02 |
590 | 637 | 4.289410 | TCCATTTGAGGGACAAGATTGAGA | 59.711 | 41.667 | 0.00 | 0.00 | 39.77 | 3.27 |
591 | 638 | 4.397417 | CCATTTGAGGGACAAGATTGAGAC | 59.603 | 45.833 | 0.00 | 0.00 | 39.77 | 3.36 |
592 | 639 | 4.705110 | TTTGAGGGACAAGATTGAGACA | 57.295 | 40.909 | 0.00 | 0.00 | 39.77 | 3.41 |
593 | 640 | 4.705110 | TTGAGGGACAAGATTGAGACAA | 57.295 | 40.909 | 0.00 | 0.00 | 34.20 | 3.18 |
594 | 641 | 4.705110 | TGAGGGACAAGATTGAGACAAA | 57.295 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
595 | 642 | 5.246981 | TGAGGGACAAGATTGAGACAAAT | 57.753 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
596 | 643 | 5.634118 | TGAGGGACAAGATTGAGACAAATT | 58.366 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
597 | 644 | 6.070656 | TGAGGGACAAGATTGAGACAAATTT | 58.929 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
598 | 645 | 6.550854 | TGAGGGACAAGATTGAGACAAATTTT | 59.449 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
599 | 646 | 7.069826 | TGAGGGACAAGATTGAGACAAATTTTT | 59.930 | 33.333 | 0.00 | 0.00 | 0.00 | 1.94 |
616 | 663 | 2.845363 | TTTTTGACGGGGAGAGTACC | 57.155 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
626 | 673 | 1.763968 | GGAGAGTACCCAAAATGCCC | 58.236 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
627 | 674 | 1.285078 | GGAGAGTACCCAAAATGCCCT | 59.715 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
628 | 675 | 2.369394 | GAGAGTACCCAAAATGCCCTG | 58.631 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
629 | 676 | 1.005924 | AGAGTACCCAAAATGCCCTGG | 59.994 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
630 | 677 | 1.005450 | GAGTACCCAAAATGCCCTGGA | 59.995 | 52.381 | 0.00 | 0.00 | 34.35 | 3.86 |
631 | 678 | 1.431243 | AGTACCCAAAATGCCCTGGAA | 59.569 | 47.619 | 0.00 | 0.00 | 34.35 | 3.53 |
632 | 679 | 1.548719 | GTACCCAAAATGCCCTGGAAC | 59.451 | 52.381 | 0.00 | 0.00 | 34.35 | 3.62 |
633 | 680 | 0.105246 | ACCCAAAATGCCCTGGAACA | 60.105 | 50.000 | 0.00 | 0.00 | 34.35 | 3.18 |
634 | 681 | 1.055040 | CCCAAAATGCCCTGGAACAA | 58.945 | 50.000 | 0.00 | 0.00 | 38.70 | 2.83 |
635 | 682 | 1.419387 | CCCAAAATGCCCTGGAACAAA | 59.581 | 47.619 | 0.00 | 0.00 | 38.70 | 2.83 |
636 | 683 | 2.493035 | CCAAAATGCCCTGGAACAAAC | 58.507 | 47.619 | 0.00 | 0.00 | 38.70 | 2.93 |
637 | 684 | 2.158842 | CCAAAATGCCCTGGAACAAACA | 60.159 | 45.455 | 0.00 | 0.00 | 38.70 | 2.83 |
638 | 685 | 2.871633 | CAAAATGCCCTGGAACAAACAC | 59.128 | 45.455 | 0.00 | 0.00 | 38.70 | 3.32 |
639 | 686 | 0.673437 | AATGCCCTGGAACAAACACG | 59.327 | 50.000 | 0.00 | 0.00 | 38.70 | 4.49 |
640 | 687 | 0.467290 | ATGCCCTGGAACAAACACGT | 60.467 | 50.000 | 0.00 | 0.00 | 38.70 | 4.49 |
641 | 688 | 1.358759 | GCCCTGGAACAAACACGTG | 59.641 | 57.895 | 15.48 | 15.48 | 38.70 | 4.49 |
642 | 689 | 1.098712 | GCCCTGGAACAAACACGTGA | 61.099 | 55.000 | 25.01 | 0.00 | 38.70 | 4.35 |
643 | 690 | 1.384525 | CCCTGGAACAAACACGTGAA | 58.615 | 50.000 | 25.01 | 0.00 | 38.70 | 3.18 |
644 | 691 | 1.064952 | CCCTGGAACAAACACGTGAAC | 59.935 | 52.381 | 25.01 | 6.24 | 38.70 | 3.18 |
645 | 692 | 1.064952 | CCTGGAACAAACACGTGAACC | 59.935 | 52.381 | 25.01 | 14.88 | 38.70 | 3.62 |
652 | 699 | 3.570559 | ACAAACACGTGAACCAAACAAG | 58.429 | 40.909 | 25.01 | 2.31 | 0.00 | 3.16 |
659 | 706 | 2.602217 | CGTGAACCAAACAAGCAGCTAC | 60.602 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
678 | 727 | 1.133792 | ACACCAAAGGTCACTGGGAAG | 60.134 | 52.381 | 0.00 | 0.00 | 37.00 | 3.46 |
719 | 770 | 3.054503 | CAGTGACAGGCAGGCAGC | 61.055 | 66.667 | 0.00 | 0.00 | 34.37 | 5.25 |
752 | 803 | 4.100084 | CCCGGTCCAGCATGCAGA | 62.100 | 66.667 | 21.98 | 13.56 | 31.97 | 4.26 |
753 | 804 | 2.513204 | CCGGTCCAGCATGCAGAG | 60.513 | 66.667 | 21.98 | 9.16 | 31.97 | 3.35 |
1103 | 1303 | 2.029964 | GTTCCGTTCCGTCAGGCA | 59.970 | 61.111 | 0.00 | 0.00 | 37.47 | 4.75 |
1147 | 1347 | 4.329545 | TGGTTGTCAGGGGCGAGC | 62.330 | 66.667 | 0.00 | 0.00 | 0.00 | 5.03 |
1350 | 1550 | 2.027625 | CGTCTTCTTCGCGCCCTTT | 61.028 | 57.895 | 0.00 | 0.00 | 0.00 | 3.11 |
1410 | 1610 | 6.720288 | GGCTCTACACTCCTCTGGTAATTATA | 59.280 | 42.308 | 0.00 | 0.00 | 0.00 | 0.98 |
1447 | 1647 | 0.397941 | TTCCTTGCTGACAGGGTGAG | 59.602 | 55.000 | 4.26 | 0.00 | 43.47 | 3.51 |
1452 | 1652 | 0.106708 | TGCTGACAGGGTGAGTGAAC | 59.893 | 55.000 | 4.26 | 0.00 | 0.00 | 3.18 |
1511 | 1727 | 1.707106 | CTGCATGATGGGCCCATTAA | 58.293 | 50.000 | 37.69 | 28.12 | 36.70 | 1.40 |
1654 | 1870 | 1.019805 | GGGTGGTACAAGCTCGCTTC | 61.020 | 60.000 | 0.31 | 0.00 | 44.16 | 3.86 |
1725 | 1941 | 1.816835 | CTGCAAGTCATTGTCCTGCAT | 59.183 | 47.619 | 7.47 | 0.00 | 38.76 | 3.96 |
1762 | 1978 | 8.877808 | AAATTTTGCTTTCTTCTCAAGGTTAG | 57.122 | 30.769 | 0.00 | 0.00 | 0.00 | 2.34 |
1878 | 2094 | 5.011125 | TCTGTACTCTTAGTGCTTCTTTGCT | 59.989 | 40.000 | 0.00 | 0.00 | 31.77 | 3.91 |
1886 | 2102 | 3.225104 | AGTGCTTCTTTGCTCAATCCAA | 58.775 | 40.909 | 0.00 | 0.00 | 0.00 | 3.53 |
1927 | 2143 | 5.221048 | GGCAGTTCAGAATTTGTACACTGTT | 60.221 | 40.000 | 10.11 | 0.00 | 35.10 | 3.16 |
1939 | 2155 | 1.687563 | ACACTGTTTGGTTGGTAGGC | 58.312 | 50.000 | 0.00 | 0.00 | 0.00 | 3.93 |
1958 | 2235 | 7.012610 | TGGTAGGCTTTTGTAACTCTGTTTAAC | 59.987 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
1967 | 2244 | 7.642071 | TGTAACTCTGTTTAACGTTATGGTC | 57.358 | 36.000 | 9.18 | 1.34 | 0.00 | 4.02 |
1981 | 2258 | 0.109342 | ATGGTCCATTGATCCGAGGC | 59.891 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
2020 | 2297 | 3.699894 | CCTCTGGGCTGACGCTGT | 61.700 | 66.667 | 0.00 | 0.00 | 36.09 | 4.40 |
2021 | 2298 | 2.433838 | CTCTGGGCTGACGCTGTG | 60.434 | 66.667 | 0.00 | 0.00 | 36.09 | 3.66 |
2022 | 2299 | 3.231889 | CTCTGGGCTGACGCTGTGT | 62.232 | 63.158 | 0.00 | 0.00 | 36.09 | 3.72 |
2030 | 2307 | 2.354656 | GACGCTGTGTCGCTGTCA | 60.355 | 61.111 | 5.50 | 0.00 | 37.96 | 3.58 |
2031 | 2308 | 1.949133 | GACGCTGTGTCGCTGTCAA | 60.949 | 57.895 | 5.50 | 0.00 | 37.96 | 3.18 |
2032 | 2309 | 2.147204 | GACGCTGTGTCGCTGTCAAC | 62.147 | 60.000 | 5.50 | 0.00 | 37.96 | 3.18 |
2033 | 2310 | 2.546321 | GCTGTGTCGCTGTCAACG | 59.454 | 61.111 | 0.00 | 0.00 | 0.00 | 4.10 |
2034 | 2311 | 2.943345 | GCTGTGTCGCTGTCAACGG | 61.943 | 63.158 | 0.00 | 0.00 | 0.00 | 4.44 |
2035 | 2312 | 2.943345 | CTGTGTCGCTGTCAACGGC | 61.943 | 63.158 | 3.80 | 3.80 | 44.53 | 5.68 |
2042 | 2319 | 4.436515 | CTGTCAACGGCACACAGA | 57.563 | 55.556 | 0.00 | 0.00 | 40.07 | 3.41 |
2043 | 2320 | 2.689083 | CTGTCAACGGCACACAGAA | 58.311 | 52.632 | 0.00 | 0.00 | 40.07 | 3.02 |
2044 | 2321 | 0.304705 | CTGTCAACGGCACACAGAAC | 59.695 | 55.000 | 0.00 | 0.00 | 40.07 | 3.01 |
2045 | 2322 | 1.092921 | TGTCAACGGCACACAGAACC | 61.093 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2046 | 2323 | 1.092921 | GTCAACGGCACACAGAACCA | 61.093 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2047 | 2324 | 1.092921 | TCAACGGCACACAGAACCAC | 61.093 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2048 | 2325 | 1.078072 | AACGGCACACAGAACCACA | 60.078 | 52.632 | 0.00 | 0.00 | 0.00 | 4.17 |
2064 | 2341 | 6.093219 | CAGAACCACAAAGATAATGGTGAGAG | 59.907 | 42.308 | 0.00 | 0.00 | 46.18 | 3.20 |
2065 | 2342 | 5.762179 | ACCACAAAGATAATGGTGAGAGA | 57.238 | 39.130 | 0.00 | 0.00 | 45.15 | 3.10 |
2066 | 2343 | 6.319048 | ACCACAAAGATAATGGTGAGAGAT | 57.681 | 37.500 | 0.00 | 0.00 | 45.15 | 2.75 |
2067 | 2344 | 7.437713 | ACCACAAAGATAATGGTGAGAGATA | 57.562 | 36.000 | 0.00 | 0.00 | 45.15 | 1.98 |
2068 | 2345 | 7.504403 | ACCACAAAGATAATGGTGAGAGATAG | 58.496 | 38.462 | 0.00 | 0.00 | 45.15 | 2.08 |
2069 | 2346 | 7.345653 | ACCACAAAGATAATGGTGAGAGATAGA | 59.654 | 37.037 | 0.00 | 0.00 | 45.15 | 1.98 |
2137 | 2448 | 2.299013 | TGGCTACACAAGACTGTACTGG | 59.701 | 50.000 | 4.66 | 0.00 | 32.57 | 4.00 |
2145 | 2456 | 2.016905 | AGACTGTACTGGAAGGCTGT | 57.983 | 50.000 | 4.66 | 0.00 | 39.30 | 4.40 |
2149 | 2460 | 4.081420 | AGACTGTACTGGAAGGCTGTAATG | 60.081 | 45.833 | 4.66 | 0.00 | 39.30 | 1.90 |
2150 | 2461 | 3.838317 | ACTGTACTGGAAGGCTGTAATGA | 59.162 | 43.478 | 4.66 | 0.00 | 39.30 | 2.57 |
2153 | 2464 | 5.815581 | TGTACTGGAAGGCTGTAATGAAAT | 58.184 | 37.500 | 0.00 | 0.00 | 39.30 | 2.17 |
2154 | 2465 | 6.953101 | TGTACTGGAAGGCTGTAATGAAATA | 58.047 | 36.000 | 0.00 | 0.00 | 39.30 | 1.40 |
2155 | 2466 | 7.047891 | TGTACTGGAAGGCTGTAATGAAATAG | 58.952 | 38.462 | 0.00 | 0.00 | 39.30 | 1.73 |
2156 | 2467 | 6.313519 | ACTGGAAGGCTGTAATGAAATAGA | 57.686 | 37.500 | 0.00 | 0.00 | 39.30 | 1.98 |
2221 | 2535 | 5.483937 | TCCTGCCTAAGAACATAAAGACTGA | 59.516 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2297 | 2611 | 8.755028 | GGTTAATCCCCACATTACAGTTTAATT | 58.245 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2303 | 2617 | 6.884295 | CCCCACATTACAGTTTAATTGAGAGA | 59.116 | 38.462 | 0.00 | 0.00 | 0.00 | 3.10 |
2306 | 2620 | 9.388506 | CCACATTACAGTTTAATTGAGAGAGAT | 57.611 | 33.333 | 0.00 | 0.00 | 0.00 | 2.75 |
2462 | 2776 | 7.526041 | AGGTAATGTTATATCCTGCAAATGGA | 58.474 | 34.615 | 0.00 | 0.00 | 38.06 | 3.41 |
2769 | 3084 | 3.718434 | TCAGGGAATCATGGTCTGCTTAT | 59.282 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
2969 | 3288 | 9.874215 | GATAACACCTTTTCACTACAGTTAAAC | 57.126 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
3076 | 3396 | 5.808366 | ATCTATTCAGCAGAACCCGATTA | 57.192 | 39.130 | 0.00 | 0.00 | 36.39 | 1.75 |
3102 | 3422 | 5.982890 | ATTTACTTAGCACTGCAATGGTT | 57.017 | 34.783 | 4.73 | 0.00 | 0.00 | 3.67 |
3103 | 3423 | 7.175816 | TGAATTTACTTAGCACTGCAATGGTTA | 59.824 | 33.333 | 4.73 | 0.00 | 0.00 | 2.85 |
3125 | 3445 | 7.865889 | GGTTAAAGCAGCTGTTTAACTTAACAT | 59.134 | 33.333 | 33.57 | 17.46 | 44.49 | 2.71 |
3143 | 3463 | 8.440833 | ACTTAACATCTGATAAAAGCGTGTAAC | 58.559 | 33.333 | 0.00 | 0.00 | 0.00 | 2.50 |
3211 | 3531 | 2.419198 | GCGACGGATCCAGCAGAT | 59.581 | 61.111 | 13.41 | 0.00 | 38.17 | 2.90 |
3312 | 3632 | 4.695455 | AGGTGTTTCAGATGTTGGATTACG | 59.305 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
3339 | 3659 | 3.835395 | GAGGGAACTGGAGAAAAGAGAGA | 59.165 | 47.826 | 0.00 | 0.00 | 44.43 | 3.10 |
3364 | 3684 | 3.954200 | TGAGGTTGCTGATGCTAATGAA | 58.046 | 40.909 | 0.00 | 0.00 | 40.48 | 2.57 |
3440 | 3760 | 8.682936 | TTTCTCTGCATTTCTCCTTATATTCC | 57.317 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
3499 | 3819 | 3.890313 | TGGTCCTCTGAGCAGCAA | 58.110 | 55.556 | 0.00 | 0.00 | 43.72 | 3.91 |
3511 | 3831 | 2.038164 | TGAGCAGCAAGACAGTGAAGAT | 59.962 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
3544 | 3864 | 0.514691 | GCAGCCTTTGTGAAGTCGAG | 59.485 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
3685 | 4005 | 2.483877 | GACGGTTTTGATCATCACTGCA | 59.516 | 45.455 | 11.77 | 0.00 | 0.00 | 4.41 |
3701 | 4021 | 2.027192 | ACTGCAGGGTAACATACACCTG | 60.027 | 50.000 | 19.93 | 15.16 | 43.77 | 4.00 |
3737 | 4220 | 9.887629 | ATCTCTTTATATATGGTCATGAGCAAG | 57.112 | 33.333 | 29.58 | 20.02 | 42.53 | 4.01 |
3749 | 4234 | 6.716628 | TGGTCATGAGCAAGTCTTCTTATTTT | 59.283 | 34.615 | 24.64 | 0.00 | 35.69 | 1.82 |
3750 | 4235 | 7.882791 | TGGTCATGAGCAAGTCTTCTTATTTTA | 59.117 | 33.333 | 24.64 | 0.00 | 35.69 | 1.52 |
3877 | 4572 | 1.468914 | GCCCTTTTCTTGGTAAGCTCG | 59.531 | 52.381 | 0.00 | 0.00 | 0.00 | 5.03 |
3991 | 4686 | 4.881273 | TCAACTGCATTCTACAACACAGTT | 59.119 | 37.500 | 0.00 | 0.00 | 46.26 | 3.16 |
4005 | 4700 | 6.208644 | ACAACACAGTTGTTCTTATGCATTC | 58.791 | 36.000 | 3.54 | 0.00 | 44.57 | 2.67 |
4008 | 4703 | 5.412594 | ACACAGTTGTTCTTATGCATTCGAT | 59.587 | 36.000 | 3.54 | 0.00 | 28.43 | 3.59 |
4300 | 4995 | 7.600065 | AGTGCTAAGTGTTTTACTCGATCTTA | 58.400 | 34.615 | 0.00 | 0.00 | 39.18 | 2.10 |
4469 | 5165 | 3.623960 | TGTAACCATTGTTATACCAGCGC | 59.376 | 43.478 | 0.00 | 0.00 | 39.08 | 5.92 |
4470 | 5166 | 2.411628 | ACCATTGTTATACCAGCGCA | 57.588 | 45.000 | 11.47 | 0.00 | 0.00 | 6.09 |
4471 | 5167 | 2.288666 | ACCATTGTTATACCAGCGCAG | 58.711 | 47.619 | 11.47 | 0.00 | 0.00 | 5.18 |
4472 | 5168 | 5.034365 | AACCATTGTTATACCAGCGCAGC | 62.034 | 47.826 | 11.47 | 0.00 | 44.52 | 5.25 |
4557 | 5256 | 7.926018 | ACCTCACTCAAATATTTTGTGGAAAAC | 59.074 | 33.333 | 19.25 | 0.00 | 33.86 | 2.43 |
4643 | 5342 | 6.164408 | TGAGCAAACAACTGTTATATCACG | 57.836 | 37.500 | 0.00 | 0.00 | 37.25 | 4.35 |
4651 | 5350 | 4.336889 | ACTGTTATATCACGGGTCCATG | 57.663 | 45.455 | 1.10 | 0.00 | 0.00 | 3.66 |
4653 | 5352 | 4.593206 | ACTGTTATATCACGGGTCCATGAT | 59.407 | 41.667 | 11.52 | 11.52 | 38.99 | 2.45 |
4666 | 5365 | 6.017440 | ACGGGTCCATGATTTTTATGTTATCG | 60.017 | 38.462 | 0.00 | 0.00 | 0.00 | 2.92 |
4695 | 5394 | 5.979517 | ACTGATAAACTGCAAAGAAAACAGC | 59.020 | 36.000 | 0.00 | 0.00 | 34.72 | 4.40 |
4706 | 5406 | 5.414535 | CAAAGAAAACAGCGAAAATGAACG | 58.585 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
4715 | 5415 | 5.640357 | ACAGCGAAAATGAACGGATTACTTA | 59.360 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4836 | 5539 | 3.998913 | TTGATGCAGGGAATCAGTACA | 57.001 | 42.857 | 0.00 | 0.00 | 35.54 | 2.90 |
5027 | 5730 | 2.695666 | AGGTGAGAACCCTACATCATCG | 59.304 | 50.000 | 0.00 | 0.00 | 0.00 | 3.84 |
5165 | 5872 | 6.237901 | TGTGGTGAAGTAATCATAGCTGTTT | 58.762 | 36.000 | 0.00 | 0.00 | 40.97 | 2.83 |
5304 | 6012 | 3.945346 | AGTTCCGCACACATGGTTATAA | 58.055 | 40.909 | 0.00 | 0.00 | 0.00 | 0.98 |
5412 | 6123 | 2.158900 | CGTTATTCCATCAGAGGCTGGT | 60.159 | 50.000 | 0.00 | 0.00 | 34.03 | 4.00 |
5577 | 6288 | 2.897326 | GTCCAAGGTTTTAGTGCCCATT | 59.103 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
5584 | 6295 | 6.079712 | AGGTTTTAGTGCCCATTAGAAGAT | 57.920 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
5586 | 6297 | 7.816411 | AGGTTTTAGTGCCCATTAGAAGATAT | 58.184 | 34.615 | 0.00 | 0.00 | 0.00 | 1.63 |
5592 | 6303 | 7.805083 | AGTGCCCATTAGAAGATATGAGTAT | 57.195 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
5649 | 6360 | 3.806157 | GCATGAGCAGCAGGATTGATCTA | 60.806 | 47.826 | 0.00 | 0.00 | 41.58 | 1.98 |
5663 | 6374 | 7.021873 | AGGATTGATCTAGGACCTGATAACAT | 58.978 | 38.462 | 3.53 | 0.00 | 0.00 | 2.71 |
5664 | 6375 | 7.038445 | AGGATTGATCTAGGACCTGATAACATG | 60.038 | 40.741 | 3.53 | 0.00 | 0.00 | 3.21 |
5666 | 6377 | 6.656632 | TGATCTAGGACCTGATAACATGAC | 57.343 | 41.667 | 3.53 | 0.00 | 0.00 | 3.06 |
5667 | 6378 | 5.540337 | TGATCTAGGACCTGATAACATGACC | 59.460 | 44.000 | 3.53 | 0.00 | 0.00 | 4.02 |
5709 | 6420 | 1.969923 | CCCCATGGTGATCTCTCTCTC | 59.030 | 57.143 | 11.73 | 0.00 | 0.00 | 3.20 |
5712 | 6423 | 3.069872 | CCCATGGTGATCTCTCTCTCAAG | 59.930 | 52.174 | 11.73 | 0.00 | 0.00 | 3.02 |
5718 | 6429 | 3.023119 | TGATCTCTCTCTCAAGCCTGTC | 58.977 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
5721 | 6432 | 1.515952 | CTCTCTCAAGCCTGTCGCG | 60.516 | 63.158 | 0.00 | 0.00 | 44.76 | 5.87 |
5730 | 6441 | 2.604046 | AGCCTGTCGCGAAAATATCT | 57.396 | 45.000 | 12.06 | 0.19 | 44.76 | 1.98 |
5731 | 6442 | 3.728076 | AGCCTGTCGCGAAAATATCTA | 57.272 | 42.857 | 12.06 | 0.00 | 44.76 | 1.98 |
5739 | 6450 | 4.681942 | GTCGCGAAAATATCTACAGATGCT | 59.318 | 41.667 | 12.06 | 0.00 | 36.05 | 3.79 |
5745 | 6456 | 7.433719 | GCGAAAATATCTACAGATGCTATCGAT | 59.566 | 37.037 | 2.16 | 2.16 | 36.05 | 3.59 |
5756 | 6467 | 6.101997 | CAGATGCTATCGATAGTAATGGCAA | 58.898 | 40.000 | 28.47 | 9.50 | 39.52 | 4.52 |
5769 | 6480 | 1.108776 | ATGGCAATGACATGGTCAGC | 58.891 | 50.000 | 0.00 | 3.98 | 46.04 | 4.26 |
5770 | 6481 | 0.966875 | TGGCAATGACATGGTCAGCC | 60.967 | 55.000 | 17.78 | 17.78 | 46.94 | 4.85 |
5838 | 6549 | 1.577328 | CTGCATCTTCCGCCAACGTT | 61.577 | 55.000 | 0.00 | 0.00 | 37.70 | 3.99 |
5863 | 6574 | 1.001815 | GCTCGTCTCCAGATAGCAGTC | 60.002 | 57.143 | 8.34 | 0.00 | 36.52 | 3.51 |
5884 | 6595 | 1.911357 | TGGATTCACCTGATCTGCACT | 59.089 | 47.619 | 0.00 | 0.00 | 39.86 | 4.40 |
6193 | 6904 | 3.011708 | AGACCCAAGAATGTAAATGGCCT | 59.988 | 43.478 | 3.32 | 0.00 | 0.00 | 5.19 |
6203 | 6914 | 0.893270 | TAAATGGCCTGCAGCGTGTT | 60.893 | 50.000 | 8.66 | 0.71 | 45.17 | 3.32 |
6287 | 6998 | 7.015682 | TGCATTTTTGGAATTTGGTAAGGTAGA | 59.984 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
6310 | 7021 | 7.510630 | AGAGAATGTAGAATTGTTTCGTTTCG | 58.489 | 34.615 | 0.00 | 0.00 | 36.93 | 3.46 |
6333 | 7044 | 0.036875 | GGGGCTCAAGTGCTTGTAGT | 59.963 | 55.000 | 11.17 | 0.00 | 41.16 | 2.73 |
6398 | 7109 | 1.580059 | TCTATCAGGGCCTCGGTTTT | 58.420 | 50.000 | 0.95 | 0.00 | 0.00 | 2.43 |
6512 | 7225 | 1.025041 | GCATAGTTGGCAACTAGGGC | 58.975 | 55.000 | 37.73 | 34.98 | 46.32 | 5.19 |
6526 | 7239 | 3.036091 | ACTAGGGCGTCTTAGGCATTAA | 58.964 | 45.455 | 11.16 | 0.00 | 38.57 | 1.40 |
6527 | 7240 | 2.622064 | AGGGCGTCTTAGGCATTAAG | 57.378 | 50.000 | 0.00 | 1.82 | 40.16 | 1.85 |
6529 | 7242 | 2.504175 | AGGGCGTCTTAGGCATTAAGAA | 59.496 | 45.455 | 10.44 | 0.00 | 46.99 | 2.52 |
6531 | 7244 | 3.883489 | GGGCGTCTTAGGCATTAAGAAAT | 59.117 | 43.478 | 10.44 | 0.00 | 46.99 | 2.17 |
6532 | 7245 | 4.261197 | GGGCGTCTTAGGCATTAAGAAATG | 60.261 | 45.833 | 10.44 | 6.37 | 46.99 | 2.32 |
6623 | 7338 | 7.675962 | ACGTCCTGATATAAGTACTCTGATC | 57.324 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
6683 | 7398 | 8.500753 | ACACACTAAGTAGATCTGAGACTAAG | 57.499 | 38.462 | 5.18 | 0.00 | 0.00 | 2.18 |
6718 | 7433 | 2.309528 | TATTGGACGGCACATGAGAC | 57.690 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
6730 | 7445 | 3.519579 | CACATGAGACAAGGTCAGCTAG | 58.480 | 50.000 | 0.00 | 0.00 | 34.60 | 3.42 |
6759 | 7474 | 4.761739 | TCAATTCTGCTTTGGTTAGTGGAG | 59.238 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
6776 | 7491 | 5.300752 | AGTGGAGATCAAATTATGCTACCG | 58.699 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
6829 | 7669 | 6.070021 | TGTGATTGGTCAGATTCAGAACCTAT | 60.070 | 38.462 | 0.00 | 0.00 | 34.36 | 2.57 |
6899 | 7739 | 4.036852 | GGGATTTTCAGGCTAACTATGTGC | 59.963 | 45.833 | 0.00 | 0.00 | 0.00 | 4.57 |
6942 | 7783 | 7.224557 | AGTGAAATTGCACCTGTAATGTTTTTC | 59.775 | 33.333 | 13.26 | 0.00 | 39.59 | 2.29 |
6972 | 7813 | 7.395772 | TCAATTTATCAATTACCTTGCACAGGA | 59.604 | 33.333 | 18.22 | 1.60 | 36.97 | 3.86 |
7054 | 7896 | 1.080705 | GTAGCTGTCGGTGCGAAGT | 60.081 | 57.895 | 0.00 | 0.00 | 37.72 | 3.01 |
7070 | 7912 | 2.941064 | CGAAGTATCCAGTCGACAGGTA | 59.059 | 50.000 | 24.41 | 14.13 | 36.92 | 3.08 |
7078 | 7921 | 0.535780 | AGTCGACAGGTACGGACACA | 60.536 | 55.000 | 19.50 | 0.00 | 0.00 | 3.72 |
7233 | 8076 | 6.434340 | GTGTTCCTGATCTAAGGTTGGAAAAT | 59.566 | 38.462 | 0.00 | 0.00 | 38.58 | 1.82 |
7296 | 8139 | 2.864931 | CGCCTCGAGAAAGCATCGC | 61.865 | 63.158 | 15.71 | 4.91 | 39.98 | 4.58 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
19 | 20 | 1.042475 | GTTCTTACGCGCTTTGTTGC | 58.958 | 50.000 | 5.73 | 0.00 | 0.00 | 4.17 |
30 | 31 | 5.212194 | CCACACCAATCTTTTGTTCTTACG | 58.788 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
32 | 33 | 5.205056 | ACCCACACCAATCTTTTGTTCTTA | 58.795 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
44 | 45 | 5.656416 | CCATATTGTCTAAACCCACACCAAT | 59.344 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
49 | 50 | 5.725551 | ATCCCATATTGTCTAAACCCACA | 57.274 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
57 | 58 | 7.073208 | TGACCTCTGTTATCCCATATTGTCTA | 58.927 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
60 | 61 | 5.905331 | TCTGACCTCTGTTATCCCATATTGT | 59.095 | 40.000 | 0.00 | 0.00 | 0.00 | 2.71 |
90 | 91 | 8.141268 | TCTTCTTCTTCTTCTTCTTCTTCAGAC | 58.859 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
126 | 149 | 4.517285 | TCTTCTTCTTCTGTTGTTGTGCT | 58.483 | 39.130 | 0.00 | 0.00 | 0.00 | 4.40 |
128 | 151 | 6.238320 | CCTCTTCTTCTTCTTCTGTTGTTGTG | 60.238 | 42.308 | 0.00 | 0.00 | 0.00 | 3.33 |
129 | 152 | 5.819901 | CCTCTTCTTCTTCTTCTGTTGTTGT | 59.180 | 40.000 | 0.00 | 0.00 | 0.00 | 3.32 |
130 | 153 | 6.051717 | TCCTCTTCTTCTTCTTCTGTTGTTG | 58.948 | 40.000 | 0.00 | 0.00 | 0.00 | 3.33 |
132 | 155 | 5.878406 | TCCTCTTCTTCTTCTTCTGTTGT | 57.122 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
133 | 156 | 6.520272 | TCTTCCTCTTCTTCTTCTTCTGTTG | 58.480 | 40.000 | 0.00 | 0.00 | 0.00 | 3.33 |
135 | 161 | 5.245977 | CCTCTTCCTCTTCTTCTTCTTCTGT | 59.754 | 44.000 | 0.00 | 0.00 | 0.00 | 3.41 |
162 | 193 | 5.246981 | AGTCCATCATCTTCTGGTTTTGA | 57.753 | 39.130 | 0.00 | 0.00 | 34.03 | 2.69 |
163 | 194 | 5.105997 | GGAAGTCCATCATCTTCTGGTTTTG | 60.106 | 44.000 | 0.00 | 0.00 | 39.67 | 2.44 |
164 | 195 | 5.012893 | GGAAGTCCATCATCTTCTGGTTTT | 58.987 | 41.667 | 0.00 | 0.00 | 39.67 | 2.43 |
168 | 199 | 3.920231 | TGGAAGTCCATCATCTTCTGG | 57.080 | 47.619 | 0.00 | 0.00 | 42.01 | 3.86 |
196 | 227 | 7.428826 | CAATATGGCTGAATAGGGAAAAGTTC | 58.571 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
197 | 228 | 6.324770 | CCAATATGGCTGAATAGGGAAAAGTT | 59.675 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
198 | 229 | 5.835280 | CCAATATGGCTGAATAGGGAAAAGT | 59.165 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
199 | 230 | 6.336842 | CCAATATGGCTGAATAGGGAAAAG | 57.663 | 41.667 | 0.00 | 0.00 | 0.00 | 2.27 |
272 | 312 | 8.974060 | TTGTTCTGTCCTAACTAGAAAACAAT | 57.026 | 30.769 | 0.00 | 0.00 | 32.76 | 2.71 |
284 | 324 | 5.527214 | CACACTGAACATTGTTCTGTCCTAA | 59.473 | 40.000 | 28.65 | 10.10 | 0.00 | 2.69 |
292 | 332 | 5.493133 | TTACCACACACTGAACATTGTTC | 57.507 | 39.130 | 20.27 | 20.27 | 0.00 | 3.18 |
326 | 368 | 7.435305 | CATCAGATGTGATCACTACTTCTCAT | 58.565 | 38.462 | 25.55 | 11.95 | 41.85 | 2.90 |
382 | 424 | 6.195868 | TGATTGAATGTGTCGTTGTTGTTAC | 58.804 | 36.000 | 0.00 | 0.00 | 0.00 | 2.50 |
400 | 442 | 6.627395 | ATTTCTACCACGTTGTTTGATTGA | 57.373 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
404 | 446 | 4.336993 | AGCAATTTCTACCACGTTGTTTGA | 59.663 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
486 | 533 | 4.637534 | GGATCTGTTTGAGCTAATGCAGAA | 59.362 | 41.667 | 12.45 | 0.92 | 42.74 | 3.02 |
487 | 534 | 4.194640 | GGATCTGTTTGAGCTAATGCAGA | 58.805 | 43.478 | 11.30 | 11.30 | 42.74 | 4.26 |
518 | 565 | 6.370718 | GCTTTTCCGGACAGAAAGAATACTTA | 59.629 | 38.462 | 24.77 | 0.00 | 37.09 | 2.24 |
525 | 572 | 2.878406 | CAAGCTTTTCCGGACAGAAAGA | 59.122 | 45.455 | 24.77 | 0.00 | 37.09 | 2.52 |
526 | 573 | 2.618709 | ACAAGCTTTTCCGGACAGAAAG | 59.381 | 45.455 | 18.77 | 18.77 | 37.09 | 2.62 |
527 | 574 | 2.650322 | ACAAGCTTTTCCGGACAGAAA | 58.350 | 42.857 | 1.83 | 0.74 | 33.98 | 2.52 |
528 | 575 | 2.341846 | ACAAGCTTTTCCGGACAGAA | 57.658 | 45.000 | 1.83 | 0.00 | 0.00 | 3.02 |
529 | 576 | 2.218603 | GAACAAGCTTTTCCGGACAGA | 58.781 | 47.619 | 1.83 | 0.00 | 0.00 | 3.41 |
530 | 577 | 1.266989 | GGAACAAGCTTTTCCGGACAG | 59.733 | 52.381 | 18.44 | 4.22 | 33.46 | 3.51 |
531 | 578 | 1.314730 | GGAACAAGCTTTTCCGGACA | 58.685 | 50.000 | 18.44 | 0.00 | 33.46 | 4.02 |
532 | 579 | 0.596577 | GGGAACAAGCTTTTCCGGAC | 59.403 | 55.000 | 22.86 | 12.78 | 43.20 | 4.79 |
533 | 580 | 0.538746 | GGGGAACAAGCTTTTCCGGA | 60.539 | 55.000 | 22.86 | 0.00 | 43.20 | 5.14 |
534 | 581 | 0.539669 | AGGGGAACAAGCTTTTCCGG | 60.540 | 55.000 | 22.86 | 0.00 | 43.20 | 5.14 |
535 | 582 | 2.194201 | TAGGGGAACAAGCTTTTCCG | 57.806 | 50.000 | 22.86 | 7.03 | 43.20 | 4.30 |
536 | 583 | 3.368427 | GCATTAGGGGAACAAGCTTTTCC | 60.368 | 47.826 | 22.22 | 22.22 | 41.76 | 3.13 |
537 | 584 | 3.511540 | AGCATTAGGGGAACAAGCTTTTC | 59.488 | 43.478 | 0.00 | 4.58 | 0.00 | 2.29 |
538 | 585 | 3.510459 | AGCATTAGGGGAACAAGCTTTT | 58.490 | 40.909 | 0.00 | 0.00 | 0.00 | 2.27 |
539 | 586 | 3.175438 | AGCATTAGGGGAACAAGCTTT | 57.825 | 42.857 | 0.00 | 0.00 | 0.00 | 3.51 |
540 | 587 | 2.907458 | AGCATTAGGGGAACAAGCTT | 57.093 | 45.000 | 0.00 | 0.00 | 0.00 | 3.74 |
541 | 588 | 3.115390 | TCTAGCATTAGGGGAACAAGCT | 58.885 | 45.455 | 0.00 | 0.00 | 34.84 | 3.74 |
542 | 589 | 3.560636 | TCTAGCATTAGGGGAACAAGC | 57.439 | 47.619 | 0.00 | 0.00 | 0.00 | 4.01 |
543 | 590 | 6.174720 | TGTATCTAGCATTAGGGGAACAAG | 57.825 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
544 | 591 | 6.239887 | GGATGTATCTAGCATTAGGGGAACAA | 60.240 | 42.308 | 0.00 | 0.00 | 0.00 | 2.83 |
545 | 592 | 5.248477 | GGATGTATCTAGCATTAGGGGAACA | 59.752 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
546 | 593 | 5.248477 | TGGATGTATCTAGCATTAGGGGAAC | 59.752 | 44.000 | 0.00 | 0.00 | 0.00 | 3.62 |
547 | 594 | 5.411493 | TGGATGTATCTAGCATTAGGGGAA | 58.589 | 41.667 | 0.00 | 0.00 | 0.00 | 3.97 |
548 | 595 | 5.023514 | TGGATGTATCTAGCATTAGGGGA | 57.976 | 43.478 | 0.00 | 0.00 | 0.00 | 4.81 |
549 | 596 | 5.965033 | ATGGATGTATCTAGCATTAGGGG | 57.035 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
550 | 597 | 7.397221 | TCAAATGGATGTATCTAGCATTAGGG | 58.603 | 38.462 | 0.00 | 0.00 | 0.00 | 3.53 |
551 | 598 | 7.551974 | CCTCAAATGGATGTATCTAGCATTAGG | 59.448 | 40.741 | 0.00 | 0.00 | 0.00 | 2.69 |
552 | 599 | 7.551974 | CCCTCAAATGGATGTATCTAGCATTAG | 59.448 | 40.741 | 0.00 | 0.00 | 0.00 | 1.73 |
553 | 600 | 7.237471 | TCCCTCAAATGGATGTATCTAGCATTA | 59.763 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
554 | 601 | 6.044754 | TCCCTCAAATGGATGTATCTAGCATT | 59.955 | 38.462 | 0.00 | 0.00 | 0.00 | 3.56 |
555 | 602 | 5.549228 | TCCCTCAAATGGATGTATCTAGCAT | 59.451 | 40.000 | 0.00 | 0.00 | 0.00 | 3.79 |
556 | 603 | 4.907269 | TCCCTCAAATGGATGTATCTAGCA | 59.093 | 41.667 | 0.00 | 0.00 | 0.00 | 3.49 |
557 | 604 | 5.221722 | TGTCCCTCAAATGGATGTATCTAGC | 60.222 | 44.000 | 0.00 | 0.00 | 33.65 | 3.42 |
558 | 605 | 6.425210 | TGTCCCTCAAATGGATGTATCTAG | 57.575 | 41.667 | 0.00 | 0.00 | 33.65 | 2.43 |
559 | 606 | 6.615316 | TCTTGTCCCTCAAATGGATGTATCTA | 59.385 | 38.462 | 0.00 | 0.00 | 35.48 | 1.98 |
560 | 607 | 5.429762 | TCTTGTCCCTCAAATGGATGTATCT | 59.570 | 40.000 | 0.00 | 0.00 | 35.48 | 1.98 |
561 | 608 | 5.684704 | TCTTGTCCCTCAAATGGATGTATC | 58.315 | 41.667 | 0.00 | 0.00 | 35.48 | 2.24 |
562 | 609 | 5.715439 | TCTTGTCCCTCAAATGGATGTAT | 57.285 | 39.130 | 0.00 | 0.00 | 35.48 | 2.29 |
563 | 610 | 5.715439 | ATCTTGTCCCTCAAATGGATGTA | 57.285 | 39.130 | 0.00 | 0.00 | 35.48 | 2.29 |
564 | 611 | 4.598036 | ATCTTGTCCCTCAAATGGATGT | 57.402 | 40.909 | 0.00 | 0.00 | 35.48 | 3.06 |
565 | 612 | 4.951715 | TCAATCTTGTCCCTCAAATGGATG | 59.048 | 41.667 | 0.00 | 0.00 | 35.48 | 3.51 |
566 | 613 | 5.044624 | TCTCAATCTTGTCCCTCAAATGGAT | 60.045 | 40.000 | 0.00 | 0.00 | 35.48 | 3.41 |
567 | 614 | 4.289410 | TCTCAATCTTGTCCCTCAAATGGA | 59.711 | 41.667 | 0.00 | 0.00 | 35.48 | 3.41 |
568 | 615 | 4.397417 | GTCTCAATCTTGTCCCTCAAATGG | 59.603 | 45.833 | 0.00 | 0.00 | 35.48 | 3.16 |
569 | 616 | 5.005740 | TGTCTCAATCTTGTCCCTCAAATG | 58.994 | 41.667 | 0.00 | 0.00 | 35.48 | 2.32 |
570 | 617 | 5.246981 | TGTCTCAATCTTGTCCCTCAAAT | 57.753 | 39.130 | 0.00 | 0.00 | 35.48 | 2.32 |
571 | 618 | 4.705110 | TGTCTCAATCTTGTCCCTCAAA | 57.295 | 40.909 | 0.00 | 0.00 | 35.48 | 2.69 |
572 | 619 | 4.705110 | TTGTCTCAATCTTGTCCCTCAA | 57.295 | 40.909 | 0.00 | 0.00 | 34.61 | 3.02 |
573 | 620 | 4.705110 | TTTGTCTCAATCTTGTCCCTCA | 57.295 | 40.909 | 0.00 | 0.00 | 0.00 | 3.86 |
574 | 621 | 6.581171 | AAATTTGTCTCAATCTTGTCCCTC | 57.419 | 37.500 | 0.00 | 0.00 | 0.00 | 4.30 |
575 | 622 | 6.983906 | AAAATTTGTCTCAATCTTGTCCCT | 57.016 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
597 | 644 | 1.348696 | GGGTACTCTCCCCGTCAAAAA | 59.651 | 52.381 | 0.00 | 0.00 | 41.54 | 1.94 |
598 | 645 | 0.978907 | GGGTACTCTCCCCGTCAAAA | 59.021 | 55.000 | 0.00 | 0.00 | 41.54 | 2.44 |
599 | 646 | 0.178926 | TGGGTACTCTCCCCGTCAAA | 60.179 | 55.000 | 0.00 | 0.00 | 45.86 | 2.69 |
600 | 647 | 0.178926 | TTGGGTACTCTCCCCGTCAA | 60.179 | 55.000 | 0.00 | 0.00 | 45.86 | 3.18 |
601 | 648 | 0.178926 | TTTGGGTACTCTCCCCGTCA | 60.179 | 55.000 | 0.00 | 0.00 | 45.86 | 4.35 |
602 | 649 | 0.978907 | TTTTGGGTACTCTCCCCGTC | 59.021 | 55.000 | 0.00 | 0.00 | 45.86 | 4.79 |
603 | 650 | 1.280998 | CATTTTGGGTACTCTCCCCGT | 59.719 | 52.381 | 0.00 | 0.00 | 45.86 | 5.28 |
604 | 651 | 2.017113 | GCATTTTGGGTACTCTCCCCG | 61.017 | 57.143 | 0.00 | 0.00 | 45.86 | 5.73 |
605 | 652 | 1.685180 | GGCATTTTGGGTACTCTCCCC | 60.685 | 57.143 | 0.00 | 0.00 | 46.48 | 4.81 |
607 | 654 | 1.285078 | AGGGCATTTTGGGTACTCTCC | 59.715 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
608 | 655 | 2.369394 | CAGGGCATTTTGGGTACTCTC | 58.631 | 52.381 | 0.00 | 0.00 | 0.00 | 3.20 |
609 | 656 | 1.005924 | CCAGGGCATTTTGGGTACTCT | 59.994 | 52.381 | 0.00 | 0.00 | 0.00 | 3.24 |
610 | 657 | 1.005450 | TCCAGGGCATTTTGGGTACTC | 59.995 | 52.381 | 0.00 | 0.00 | 35.13 | 2.59 |
611 | 658 | 1.080638 | TCCAGGGCATTTTGGGTACT | 58.919 | 50.000 | 0.00 | 0.00 | 35.13 | 2.73 |
612 | 659 | 1.548719 | GTTCCAGGGCATTTTGGGTAC | 59.451 | 52.381 | 0.00 | 0.00 | 35.13 | 3.34 |
613 | 660 | 1.148027 | TGTTCCAGGGCATTTTGGGTA | 59.852 | 47.619 | 0.00 | 0.00 | 35.13 | 3.69 |
614 | 661 | 0.105246 | TGTTCCAGGGCATTTTGGGT | 60.105 | 50.000 | 0.00 | 0.00 | 35.13 | 4.51 |
615 | 662 | 1.055040 | TTGTTCCAGGGCATTTTGGG | 58.945 | 50.000 | 0.00 | 0.00 | 35.13 | 4.12 |
616 | 663 | 2.158842 | TGTTTGTTCCAGGGCATTTTGG | 60.159 | 45.455 | 0.00 | 0.00 | 35.74 | 3.28 |
617 | 664 | 2.871633 | GTGTTTGTTCCAGGGCATTTTG | 59.128 | 45.455 | 0.00 | 0.00 | 0.00 | 2.44 |
618 | 665 | 2.482839 | CGTGTTTGTTCCAGGGCATTTT | 60.483 | 45.455 | 0.00 | 0.00 | 0.00 | 1.82 |
619 | 666 | 1.068434 | CGTGTTTGTTCCAGGGCATTT | 59.932 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
620 | 667 | 0.673437 | CGTGTTTGTTCCAGGGCATT | 59.327 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
621 | 668 | 0.467290 | ACGTGTTTGTTCCAGGGCAT | 60.467 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
622 | 669 | 1.077357 | ACGTGTTTGTTCCAGGGCA | 60.077 | 52.632 | 0.00 | 0.00 | 0.00 | 5.36 |
623 | 670 | 1.098712 | TCACGTGTTTGTTCCAGGGC | 61.099 | 55.000 | 16.51 | 0.00 | 0.00 | 5.19 |
624 | 671 | 1.064952 | GTTCACGTGTTTGTTCCAGGG | 59.935 | 52.381 | 16.51 | 0.00 | 0.00 | 4.45 |
625 | 672 | 1.064952 | GGTTCACGTGTTTGTTCCAGG | 59.935 | 52.381 | 16.51 | 0.00 | 0.00 | 4.45 |
626 | 673 | 1.740585 | TGGTTCACGTGTTTGTTCCAG | 59.259 | 47.619 | 16.51 | 0.00 | 0.00 | 3.86 |
627 | 674 | 1.822506 | TGGTTCACGTGTTTGTTCCA | 58.177 | 45.000 | 16.51 | 12.49 | 0.00 | 3.53 |
628 | 675 | 2.918600 | GTTTGGTTCACGTGTTTGTTCC | 59.081 | 45.455 | 16.51 | 10.23 | 0.00 | 3.62 |
629 | 676 | 3.566523 | TGTTTGGTTCACGTGTTTGTTC | 58.433 | 40.909 | 16.51 | 3.25 | 0.00 | 3.18 |
630 | 677 | 3.644884 | TGTTTGGTTCACGTGTTTGTT | 57.355 | 38.095 | 16.51 | 0.00 | 0.00 | 2.83 |
631 | 678 | 3.570559 | CTTGTTTGGTTCACGTGTTTGT | 58.429 | 40.909 | 16.51 | 0.00 | 0.00 | 2.83 |
632 | 679 | 2.344142 | GCTTGTTTGGTTCACGTGTTTG | 59.656 | 45.455 | 16.51 | 0.00 | 0.00 | 2.93 |
633 | 680 | 2.029828 | TGCTTGTTTGGTTCACGTGTTT | 60.030 | 40.909 | 16.51 | 0.00 | 0.00 | 2.83 |
634 | 681 | 1.542030 | TGCTTGTTTGGTTCACGTGTT | 59.458 | 42.857 | 16.51 | 0.00 | 0.00 | 3.32 |
635 | 682 | 1.132262 | CTGCTTGTTTGGTTCACGTGT | 59.868 | 47.619 | 16.51 | 0.00 | 0.00 | 4.49 |
636 | 683 | 1.826327 | CTGCTTGTTTGGTTCACGTG | 58.174 | 50.000 | 9.94 | 9.94 | 0.00 | 4.49 |
637 | 684 | 0.100503 | GCTGCTTGTTTGGTTCACGT | 59.899 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
638 | 685 | 0.381801 | AGCTGCTTGTTTGGTTCACG | 59.618 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
639 | 686 | 2.357637 | TGTAGCTGCTTGTTTGGTTCAC | 59.642 | 45.455 | 7.79 | 0.00 | 0.00 | 3.18 |
640 | 687 | 2.357637 | GTGTAGCTGCTTGTTTGGTTCA | 59.642 | 45.455 | 7.79 | 0.00 | 0.00 | 3.18 |
641 | 688 | 2.287608 | GGTGTAGCTGCTTGTTTGGTTC | 60.288 | 50.000 | 7.79 | 0.00 | 0.00 | 3.62 |
642 | 689 | 1.681264 | GGTGTAGCTGCTTGTTTGGTT | 59.319 | 47.619 | 7.79 | 0.00 | 0.00 | 3.67 |
643 | 690 | 1.318576 | GGTGTAGCTGCTTGTTTGGT | 58.681 | 50.000 | 7.79 | 0.00 | 0.00 | 3.67 |
644 | 691 | 1.317613 | TGGTGTAGCTGCTTGTTTGG | 58.682 | 50.000 | 7.79 | 0.00 | 0.00 | 3.28 |
645 | 692 | 3.374745 | CTTTGGTGTAGCTGCTTGTTTG | 58.625 | 45.455 | 7.79 | 0.00 | 0.00 | 2.93 |
652 | 699 | 0.875059 | GTGACCTTTGGTGTAGCTGC | 59.125 | 55.000 | 0.00 | 0.00 | 35.25 | 5.25 |
659 | 706 | 1.609208 | CTTCCCAGTGACCTTTGGTG | 58.391 | 55.000 | 0.00 | 0.00 | 35.25 | 4.17 |
691 | 742 | 1.762522 | CTGTCACTGTGGGGCTCAGT | 61.763 | 60.000 | 8.11 | 0.00 | 45.43 | 3.41 |
692 | 743 | 1.004080 | CTGTCACTGTGGGGCTCAG | 60.004 | 63.158 | 8.11 | 5.88 | 38.68 | 3.35 |
719 | 770 | 2.567049 | GGGTGACCGACTGACTCG | 59.433 | 66.667 | 0.00 | 0.00 | 43.64 | 4.18 |
1005 | 1195 | 4.567747 | GGCCTTTCCAGGAATCAAGAAGTA | 60.568 | 45.833 | 1.58 | 0.00 | 44.19 | 2.24 |
1103 | 1303 | 3.368948 | GGCTGAGAGAAGACGGAAGAAAT | 60.369 | 47.826 | 0.00 | 0.00 | 0.00 | 2.17 |
1410 | 1610 | 3.334054 | GAGGGGGCAGGCAAGAGT | 61.334 | 66.667 | 0.00 | 0.00 | 0.00 | 3.24 |
1447 | 1647 | 1.358759 | CAAACCACAGGGCGTTCAC | 59.641 | 57.895 | 0.00 | 0.00 | 37.90 | 3.18 |
1525 | 1741 | 4.097218 | GGCACTTCCCCCAAGTTC | 57.903 | 61.111 | 0.00 | 0.00 | 43.38 | 3.01 |
1654 | 1870 | 0.970937 | TGGCCAGAAGACTACCCTCG | 60.971 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1725 | 1941 | 4.657436 | AGCAAAATTTACCAACCACGAA | 57.343 | 36.364 | 0.00 | 0.00 | 0.00 | 3.85 |
1762 | 1978 | 3.436243 | AGTAGCCCTCATATACTGCTCC | 58.564 | 50.000 | 0.00 | 0.00 | 33.63 | 4.70 |
1878 | 2094 | 6.152661 | CCAAAGGTACTGCTAAATTGGATTGA | 59.847 | 38.462 | 0.00 | 0.00 | 40.86 | 2.57 |
1886 | 2102 | 3.245264 | ACTGCCCAAAGGTACTGCTAAAT | 60.245 | 43.478 | 0.00 | 0.00 | 40.86 | 1.40 |
1927 | 2143 | 4.538738 | AGTTACAAAAGCCTACCAACCAA | 58.461 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
1939 | 2155 | 9.377383 | CCATAACGTTAAACAGAGTTACAAAAG | 57.623 | 33.333 | 12.81 | 0.00 | 32.76 | 2.27 |
1958 | 2235 | 3.059884 | CTCGGATCAATGGACCATAACG | 58.940 | 50.000 | 7.59 | 8.40 | 0.00 | 3.18 |
1967 | 2244 | 0.319900 | CTACGGCCTCGGATCAATGG | 60.320 | 60.000 | 0.00 | 0.00 | 41.39 | 3.16 |
2006 | 2283 | 2.740055 | GACACAGCGTCAGCCCAG | 60.740 | 66.667 | 0.00 | 0.00 | 46.67 | 4.45 |
2017 | 2294 | 2.943345 | GCCGTTGACAGCGACACAG | 61.943 | 63.158 | 13.70 | 0.00 | 0.00 | 3.66 |
2018 | 2295 | 2.964925 | GCCGTTGACAGCGACACA | 60.965 | 61.111 | 13.70 | 0.00 | 0.00 | 3.72 |
2019 | 2296 | 2.964925 | TGCCGTTGACAGCGACAC | 60.965 | 61.111 | 13.70 | 3.10 | 0.00 | 3.67 |
2020 | 2297 | 2.964925 | GTGCCGTTGACAGCGACA | 60.965 | 61.111 | 13.70 | 4.74 | 0.00 | 4.35 |
2021 | 2298 | 2.964925 | TGTGCCGTTGACAGCGAC | 60.965 | 61.111 | 13.70 | 1.59 | 0.00 | 5.19 |
2022 | 2299 | 2.964925 | GTGTGCCGTTGACAGCGA | 60.965 | 61.111 | 13.70 | 0.00 | 0.00 | 4.93 |
2026 | 2303 | 1.092921 | GGTTCTGTGTGCCGTTGACA | 61.093 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2028 | 2305 | 1.092921 | GTGGTTCTGTGTGCCGTTGA | 61.093 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2029 | 2306 | 1.355210 | GTGGTTCTGTGTGCCGTTG | 59.645 | 57.895 | 0.00 | 0.00 | 0.00 | 4.10 |
2030 | 2307 | 0.678366 | TTGTGGTTCTGTGTGCCGTT | 60.678 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2031 | 2308 | 0.678366 | TTTGTGGTTCTGTGTGCCGT | 60.678 | 50.000 | 0.00 | 0.00 | 0.00 | 5.68 |
2032 | 2309 | 0.029300 | CTTTGTGGTTCTGTGTGCCG | 59.971 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
2033 | 2310 | 1.388547 | TCTTTGTGGTTCTGTGTGCC | 58.611 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2034 | 2311 | 4.829064 | TTATCTTTGTGGTTCTGTGTGC | 57.171 | 40.909 | 0.00 | 0.00 | 0.00 | 4.57 |
2035 | 2312 | 5.241506 | ACCATTATCTTTGTGGTTCTGTGTG | 59.758 | 40.000 | 0.00 | 0.00 | 43.44 | 3.82 |
2036 | 2313 | 5.241506 | CACCATTATCTTTGTGGTTCTGTGT | 59.758 | 40.000 | 0.00 | 0.00 | 43.44 | 3.72 |
2037 | 2314 | 5.473162 | TCACCATTATCTTTGTGGTTCTGTG | 59.527 | 40.000 | 0.00 | 0.00 | 43.44 | 3.66 |
2038 | 2315 | 5.630121 | TCACCATTATCTTTGTGGTTCTGT | 58.370 | 37.500 | 0.00 | 0.00 | 43.44 | 3.41 |
2039 | 2316 | 5.939883 | TCTCACCATTATCTTTGTGGTTCTG | 59.060 | 40.000 | 0.00 | 0.00 | 43.44 | 3.02 |
2040 | 2317 | 6.013379 | TCTCTCACCATTATCTTTGTGGTTCT | 60.013 | 38.462 | 0.00 | 0.00 | 43.44 | 3.01 |
2041 | 2318 | 6.173339 | TCTCTCACCATTATCTTTGTGGTTC | 58.827 | 40.000 | 0.00 | 0.00 | 43.44 | 3.62 |
2042 | 2319 | 6.126863 | TCTCTCACCATTATCTTTGTGGTT | 57.873 | 37.500 | 0.00 | 0.00 | 43.44 | 3.67 |
2043 | 2320 | 5.762179 | TCTCTCACCATTATCTTTGTGGT | 57.238 | 39.130 | 0.00 | 0.00 | 46.72 | 4.16 |
2044 | 2321 | 7.730084 | TCTATCTCTCACCATTATCTTTGTGG | 58.270 | 38.462 | 0.00 | 0.00 | 38.96 | 4.17 |
2045 | 2322 | 9.775854 | AATCTATCTCTCACCATTATCTTTGTG | 57.224 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
2046 | 2323 | 9.775854 | CAATCTATCTCTCACCATTATCTTTGT | 57.224 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2047 | 2324 | 9.993454 | TCAATCTATCTCTCACCATTATCTTTG | 57.007 | 33.333 | 0.00 | 0.00 | 0.00 | 2.77 |
2059 | 2336 | 7.004691 | TCCGGAAACTATCAATCTATCTCTCA | 58.995 | 38.462 | 0.00 | 0.00 | 0.00 | 3.27 |
2077 | 2388 | 1.970092 | ATCACGTTGGTTTCCGGAAA | 58.030 | 45.000 | 25.67 | 25.67 | 0.00 | 3.13 |
2137 | 2448 | 7.550906 | AGACAGTTCTATTTCATTACAGCCTTC | 59.449 | 37.037 | 0.00 | 0.00 | 0.00 | 3.46 |
2145 | 2456 | 6.823689 | GGGCAAGAGACAGTTCTATTTCATTA | 59.176 | 38.462 | 0.00 | 0.00 | 30.54 | 1.90 |
2149 | 2460 | 4.579869 | TGGGCAAGAGACAGTTCTATTTC | 58.420 | 43.478 | 0.00 | 0.00 | 30.54 | 2.17 |
2150 | 2461 | 4.640771 | TGGGCAAGAGACAGTTCTATTT | 57.359 | 40.909 | 0.00 | 0.00 | 30.54 | 1.40 |
2153 | 2464 | 4.530553 | TGTATTGGGCAAGAGACAGTTCTA | 59.469 | 41.667 | 0.00 | 0.00 | 29.47 | 2.10 |
2154 | 2465 | 3.327757 | TGTATTGGGCAAGAGACAGTTCT | 59.672 | 43.478 | 0.00 | 0.00 | 33.37 | 3.01 |
2155 | 2466 | 3.674997 | TGTATTGGGCAAGAGACAGTTC | 58.325 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
2156 | 2467 | 3.788227 | TGTATTGGGCAAGAGACAGTT | 57.212 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
2196 | 2510 | 6.013725 | TCAGTCTTTATGTTCTTAGGCAGGAA | 60.014 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
2221 | 2535 | 1.208165 | CCCCAGGGTCTAGCACCTTT | 61.208 | 60.000 | 4.22 | 0.00 | 45.95 | 3.11 |
2238 | 2552 | 2.672908 | CCCGGTTGGTTAGGACCC | 59.327 | 66.667 | 0.00 | 0.00 | 45.92 | 4.46 |
2272 | 2586 | 9.581099 | CAATTAAACTGTAATGTGGGGATTAAC | 57.419 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
2342 | 2656 | 5.561679 | GGAAAGATAGGACCACAAGAAACT | 58.438 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
2350 | 2664 | 3.640029 | TGGTATCGGAAAGATAGGACCAC | 59.360 | 47.826 | 0.00 | 0.00 | 39.39 | 4.16 |
2462 | 2776 | 8.718656 | AGAAGTAAAGAATAATGCAGGGATAGT | 58.281 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
2620 | 2935 | 5.178252 | GCCACTCTGTAATACATGCATACAG | 59.822 | 44.000 | 17.01 | 17.01 | 44.97 | 2.74 |
2626 | 2941 | 4.478843 | CATGCCACTCTGTAATACATGC | 57.521 | 45.455 | 0.00 | 0.00 | 0.00 | 4.06 |
3052 | 3372 | 5.808366 | ATCGGGTTCTGCTGAATAGATTA | 57.192 | 39.130 | 9.40 | 0.00 | 34.40 | 1.75 |
3070 | 3390 | 7.072030 | GCAGTGCTAAGTAAATTCATAATCGG | 58.928 | 38.462 | 8.18 | 0.00 | 0.00 | 4.18 |
3076 | 3396 | 6.153340 | ACCATTGCAGTGCTAAGTAAATTCAT | 59.847 | 34.615 | 17.60 | 0.00 | 0.00 | 2.57 |
3125 | 3445 | 5.790593 | AGAAGGTTACACGCTTTTATCAGA | 58.209 | 37.500 | 0.00 | 0.00 | 0.00 | 3.27 |
3173 | 3493 | 3.402110 | CAGCACACCAGATGTACAGAAA | 58.598 | 45.455 | 0.33 | 0.00 | 40.64 | 2.52 |
3211 | 3531 | 3.397618 | TCTTTGATTTGAAGACCCCTGGA | 59.602 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
3271 | 3591 | 2.840651 | ACCTTGTATGGACTCCTTCAGG | 59.159 | 50.000 | 0.00 | 0.45 | 0.00 | 3.86 |
3274 | 3594 | 3.983044 | ACACCTTGTATGGACTCCTTC | 57.017 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
3312 | 3632 | 4.773149 | TCTTTTCTCCAGTTCCCTCTAGTC | 59.227 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
3339 | 3659 | 2.211250 | AGCATCAGCAACCTCATGTT | 57.789 | 45.000 | 0.00 | 0.00 | 45.49 | 2.71 |
3364 | 3684 | 6.599244 | TGTTCTTCAGTTCAGTCATTGACTTT | 59.401 | 34.615 | 16.64 | 0.90 | 41.37 | 2.66 |
3414 | 3734 | 9.125026 | GGAATATAAGGAGAAATGCAGAGAAAA | 57.875 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
3499 | 3819 | 4.647564 | AAACATCCCATCTTCACTGTCT | 57.352 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
3511 | 3831 | 0.968405 | GGCTGCAGAAAAACATCCCA | 59.032 | 50.000 | 20.43 | 0.00 | 0.00 | 4.37 |
3544 | 3864 | 3.191371 | CCAGCAGGTGAAAGAAACATACC | 59.809 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
3585 | 3905 | 5.153513 | AGCAACACGTTAAATACTTGCATG | 58.846 | 37.500 | 10.24 | 0.00 | 37.70 | 4.06 |
3590 | 3910 | 7.542824 | ACACAAAAAGCAACACGTTAAATACTT | 59.457 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
3719 | 4039 | 7.313740 | AGAAGACTTGCTCATGACCATATAT | 57.686 | 36.000 | 0.00 | 0.00 | 0.00 | 0.86 |
3773 | 4468 | 5.708697 | ACTGTTGAGATTGAGCAATTCATGA | 59.291 | 36.000 | 0.00 | 0.00 | 35.27 | 3.07 |
3782 | 4477 | 1.736681 | GAGCCACTGTTGAGATTGAGC | 59.263 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
3877 | 4572 | 6.341316 | TCTACCAAAGCATGATAGAGAACAC | 58.659 | 40.000 | 0.00 | 0.00 | 0.00 | 3.32 |
3991 | 4686 | 6.072230 | TGACCAAAATCGAATGCATAAGAACA | 60.072 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
4005 | 4700 | 5.058149 | TCCAACAATGATGACCAAAATCG | 57.942 | 39.130 | 0.00 | 0.00 | 0.00 | 3.34 |
4008 | 4703 | 5.384336 | TCTCTCCAACAATGATGACCAAAA | 58.616 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
4210 | 4905 | 2.223340 | CCACAATGATGAAAGGCGCTAC | 60.223 | 50.000 | 7.64 | 0.00 | 0.00 | 3.58 |
4265 | 4960 | 3.278574 | ACACTTAGCACTTTCAACAGCA | 58.721 | 40.909 | 0.00 | 0.00 | 0.00 | 4.41 |
4328 | 5023 | 0.537143 | AGGATGCCTGCGTCAACAAA | 60.537 | 50.000 | 12.98 | 0.00 | 33.86 | 2.83 |
4330 | 5025 | 1.672030 | CAGGATGCCTGCGTCAACA | 60.672 | 57.895 | 12.98 | 0.00 | 45.13 | 3.33 |
4464 | 5160 | 0.041839 | GTAATGGAATCGCTGCGCTG | 60.042 | 55.000 | 18.65 | 10.04 | 0.00 | 5.18 |
4469 | 5165 | 4.248859 | CAGGGATAGTAATGGAATCGCTG | 58.751 | 47.826 | 12.31 | 12.31 | 42.75 | 5.18 |
4470 | 5166 | 3.904339 | ACAGGGATAGTAATGGAATCGCT | 59.096 | 43.478 | 0.00 | 0.00 | 35.37 | 4.93 |
4471 | 5167 | 3.997021 | CACAGGGATAGTAATGGAATCGC | 59.003 | 47.826 | 0.00 | 0.00 | 0.00 | 4.58 |
4472 | 5168 | 3.997021 | GCACAGGGATAGTAATGGAATCG | 59.003 | 47.826 | 0.00 | 0.00 | 0.00 | 3.34 |
4473 | 5169 | 5.234466 | AGCACAGGGATAGTAATGGAATC | 57.766 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
4525 | 5224 | 6.431234 | ACAAAATATTTGAGTGAGGTGGTCTC | 59.569 | 38.462 | 9.62 | 0.00 | 42.74 | 3.36 |
4557 | 5256 | 2.221055 | GGCTAAGTGTCACAAGTTCACG | 59.779 | 50.000 | 5.62 | 0.00 | 37.20 | 4.35 |
4643 | 5342 | 7.272037 | ACGATAACATAAAAATCATGGACCC | 57.728 | 36.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4666 | 5365 | 9.118236 | GTTTTCTTTGCAGTTTATCAGTGATAC | 57.882 | 33.333 | 12.50 | 5.17 | 0.00 | 2.24 |
4695 | 5394 | 8.944212 | AAAACTAAGTAATCCGTTCATTTTCG | 57.056 | 30.769 | 0.00 | 0.00 | 0.00 | 3.46 |
4747 | 5447 | 6.919662 | GGCAACAATACAAACTATCCATGATG | 59.080 | 38.462 | 0.00 | 0.00 | 0.00 | 3.07 |
4810 | 5513 | 3.443052 | TGATTCCCTGCATCAAATTGGT | 58.557 | 40.909 | 0.00 | 0.00 | 0.00 | 3.67 |
4811 | 5514 | 3.449737 | ACTGATTCCCTGCATCAAATTGG | 59.550 | 43.478 | 0.00 | 0.00 | 30.12 | 3.16 |
4836 | 5539 | 3.641436 | TCAGGGCAATGATGTAGTCGTAT | 59.359 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
5055 | 5758 | 1.726853 | ACAGCGCCAGTTCTAATGTC | 58.273 | 50.000 | 2.29 | 0.00 | 0.00 | 3.06 |
5193 | 5900 | 4.908601 | AGATGTCCAAGTCATACCAACA | 57.091 | 40.909 | 0.00 | 0.00 | 0.00 | 3.33 |
5241 | 5949 | 3.932545 | TCGTTGCCATTTACAAATGCT | 57.067 | 38.095 | 8.83 | 0.00 | 43.38 | 3.79 |
5277 | 5985 | 3.687698 | ACCATGTGTGCGGAACTTATAAC | 59.312 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
5279 | 5987 | 3.620427 | ACCATGTGTGCGGAACTTATA | 57.380 | 42.857 | 0.00 | 0.00 | 0.00 | 0.98 |
5282 | 5990 | 2.264005 | TAACCATGTGTGCGGAACTT | 57.736 | 45.000 | 0.00 | 0.00 | 0.00 | 2.66 |
5304 | 6012 | 7.015292 | TGCAGAAAAGGGAATACGTCTATCTAT | 59.985 | 37.037 | 0.00 | 0.00 | 0.00 | 1.98 |
5344 | 6054 | 5.353400 | TGCTTCAGATTATTTGTGAGCTGAG | 59.647 | 40.000 | 0.00 | 0.00 | 34.33 | 3.35 |
5412 | 6123 | 3.512329 | TGGTAGCGGAGTTATGTGAAGAA | 59.488 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
5592 | 6303 | 3.181470 | TGTCTGTTTCATGACCGAGTGAA | 60.181 | 43.478 | 0.00 | 0.00 | 32.86 | 3.18 |
5649 | 6360 | 3.724478 | TCTGGTCATGTTATCAGGTCCT | 58.276 | 45.455 | 3.94 | 0.00 | 35.36 | 3.85 |
5663 | 6374 | 4.425772 | TCCTCTCCTATTTGTTCTGGTCA | 58.574 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
5664 | 6375 | 5.422214 | TTCCTCTCCTATTTGTTCTGGTC | 57.578 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
5666 | 6377 | 4.775236 | CCTTCCTCTCCTATTTGTTCTGG | 58.225 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
5667 | 6378 | 4.195416 | GCCTTCCTCTCCTATTTGTTCTG | 58.805 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
5709 | 6420 | 2.609459 | AGATATTTTCGCGACAGGCTTG | 59.391 | 45.455 | 9.15 | 0.00 | 40.44 | 4.01 |
5712 | 6423 | 3.120792 | TGTAGATATTTTCGCGACAGGC | 58.879 | 45.455 | 9.15 | 0.00 | 38.69 | 4.85 |
5718 | 6429 | 6.290799 | CGATAGCATCTGTAGATATTTTCGCG | 60.291 | 42.308 | 0.00 | 0.00 | 32.63 | 5.87 |
5730 | 6441 | 6.377146 | TGCCATTACTATCGATAGCATCTGTA | 59.623 | 38.462 | 28.37 | 12.85 | 33.68 | 2.74 |
5731 | 6442 | 5.185828 | TGCCATTACTATCGATAGCATCTGT | 59.814 | 40.000 | 28.37 | 13.78 | 33.68 | 3.41 |
5739 | 6450 | 6.818142 | CCATGTCATTGCCATTACTATCGATA | 59.182 | 38.462 | 4.78 | 4.78 | 0.00 | 2.92 |
5745 | 6456 | 5.109500 | TGACCATGTCATTGCCATTACTA | 57.891 | 39.130 | 0.00 | 0.00 | 37.67 | 1.82 |
5756 | 6467 | 1.134280 | GTGCTAGGCTGACCATGTCAT | 60.134 | 52.381 | 0.00 | 0.00 | 41.94 | 3.06 |
5838 | 6549 | 2.234143 | CTATCTGGAGACGAGCCATCA | 58.766 | 52.381 | 0.00 | 0.00 | 34.33 | 3.07 |
5863 | 6574 | 2.093075 | AGTGCAGATCAGGTGAATCCAG | 60.093 | 50.000 | 0.00 | 0.00 | 39.02 | 3.86 |
5871 | 6582 | 1.066858 | CGGTACAAGTGCAGATCAGGT | 60.067 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
5884 | 6595 | 1.342174 | GACACCTGAGAACCGGTACAA | 59.658 | 52.381 | 8.00 | 0.00 | 30.91 | 2.41 |
6193 | 6904 | 1.948104 | ACAAGTTAGAACACGCTGCA | 58.052 | 45.000 | 0.00 | 0.00 | 0.00 | 4.41 |
6203 | 6914 | 2.158871 | AGGTGGCGTCAAACAAGTTAGA | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 2.10 |
6287 | 6998 | 6.077838 | GCGAAACGAAACAATTCTACATTCT | 58.922 | 36.000 | 0.00 | 0.00 | 33.17 | 2.40 |
6333 | 7044 | 6.571605 | TGAAATTGTCATCTCACAGCAAAAA | 58.428 | 32.000 | 0.00 | 0.00 | 0.00 | 1.94 |
6398 | 7109 | 9.308318 | GTAATAAGAGCAGTTTCAAAAACCAAA | 57.692 | 29.630 | 0.00 | 0.00 | 0.00 | 3.28 |
6407 | 7118 | 9.809096 | CTCTAAGATGTAATAAGAGCAGTTTCA | 57.191 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
6444 | 7156 | 1.996191 | GAAGCTAGCAAGTCAACCTCG | 59.004 | 52.381 | 18.83 | 0.00 | 0.00 | 4.63 |
6526 | 7239 | 2.106683 | GCACGGCCGTAGCATTTCT | 61.107 | 57.895 | 33.23 | 10.13 | 42.56 | 2.52 |
6527 | 7240 | 2.309764 | CTGCACGGCCGTAGCATTTC | 62.310 | 60.000 | 37.35 | 20.71 | 42.56 | 2.17 |
6529 | 7242 | 2.593468 | ATCTGCACGGCCGTAGCATT | 62.593 | 55.000 | 37.35 | 28.96 | 42.56 | 3.56 |
6531 | 7244 | 3.309436 | AATCTGCACGGCCGTAGCA | 62.309 | 57.895 | 35.92 | 35.92 | 42.56 | 3.49 |
6532 | 7245 | 2.511600 | AATCTGCACGGCCGTAGC | 60.512 | 61.111 | 33.70 | 32.79 | 38.76 | 3.58 |
6623 | 7338 | 3.951680 | ACTTGGTTGTGACTAAAGGGTTG | 59.048 | 43.478 | 0.00 | 0.00 | 0.00 | 3.77 |
6683 | 7398 | 7.627340 | CCGTCCAATATGACAGTATTTGTTAC | 58.373 | 38.462 | 0.00 | 0.00 | 41.05 | 2.50 |
6718 | 7433 | 3.667497 | TGACTCAACTAGCTGACCTTG | 57.333 | 47.619 | 0.00 | 0.00 | 0.00 | 3.61 |
6730 | 7445 | 4.574599 | ACCAAAGCAGAATTGACTCAAC | 57.425 | 40.909 | 0.00 | 0.00 | 0.00 | 3.18 |
6776 | 7491 | 1.805945 | CGCTGACGTGTTAGGGCTC | 60.806 | 63.158 | 0.00 | 0.00 | 33.53 | 4.70 |
6942 | 7783 | 8.372521 | GTGCAAGGTAATTGATAAATTGAAACG | 58.627 | 33.333 | 0.00 | 0.00 | 41.83 | 3.60 |
6978 | 7819 | 5.592104 | TTGAACAACCCCTTCTTTCTTTC | 57.408 | 39.130 | 0.00 | 0.00 | 0.00 | 2.62 |
6982 | 7823 | 5.276461 | ACATTTGAACAACCCCTTCTTTC | 57.724 | 39.130 | 0.00 | 0.00 | 0.00 | 2.62 |
7054 | 7896 | 1.210234 | TCCGTACCTGTCGACTGGATA | 59.790 | 52.381 | 38.57 | 25.72 | 38.22 | 2.59 |
7070 | 7912 | 2.549754 | CAAGATTCAGCTTTGTGTCCGT | 59.450 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
7078 | 7921 | 2.818432 | CAGGACTGCAAGATTCAGCTTT | 59.182 | 45.455 | 0.00 | 0.00 | 37.43 | 3.51 |
7233 | 8076 | 9.098355 | GCTGTTTTTATATGACAGATGTACTCA | 57.902 | 33.333 | 12.31 | 0.00 | 42.54 | 3.41 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.