Multiple sequence alignment - TraesCS2B01G209400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G209400 chr2B 100.000 3077 0 0 1 3077 191738905 191735829 0.000000e+00 5683.0
1 TraesCS2B01G209400 chr2B 98.519 405 5 1 1 405 340548290 340548693 0.000000e+00 713.0
2 TraesCS2B01G209400 chr2B 97.368 418 5 3 1 413 742108182 742108598 0.000000e+00 706.0
3 TraesCS2B01G209400 chr2B 91.295 471 23 6 655 1107 797909129 797909599 7.240000e-176 627.0
4 TraesCS2B01G209400 chr5B 96.257 2431 51 7 662 3077 549714024 549716429 0.000000e+00 3949.0
5 TraesCS2B01G209400 chr5B 90.778 694 33 8 663 1334 513728946 513728262 0.000000e+00 898.0
6 TraesCS2B01G209400 chr5B 83.070 951 94 29 1117 2058 620947885 620948777 0.000000e+00 802.0
7 TraesCS2B01G209400 chr5B 98.519 405 6 0 1 405 526640962 526641366 0.000000e+00 715.0
8 TraesCS2B01G209400 chr5B 98.519 405 6 0 1 405 636507203 636506799 0.000000e+00 715.0
9 TraesCS2B01G209400 chr5B 97.821 413 7 2 1 412 439447472 439447883 0.000000e+00 712.0
10 TraesCS2B01G209400 chr5B 96.479 142 5 0 935 1076 508811304 508811445 5.130000e-58 235.0
11 TraesCS2B01G209400 chr5B 96.183 131 5 0 1316 1446 513728310 513728180 6.680000e-52 215.0
12 TraesCS2B01G209400 chr5B 93.860 114 7 0 1117 1230 620947939 620948052 4.080000e-39 172.0
13 TraesCS2B01G209400 chr1B 97.900 1762 33 2 1316 3077 507365991 507364234 0.000000e+00 3046.0
14 TraesCS2B01G209400 chr1B 97.401 1770 35 2 1316 3077 14779033 14777267 0.000000e+00 3003.0
15 TraesCS2B01G209400 chr1B 97.198 1463 38 1 1316 2778 306680322 306678863 0.000000e+00 2471.0
16 TraesCS2B01G209400 chr1B 93.003 686 24 7 663 1334 507366618 507365943 0.000000e+00 979.0
17 TraesCS2B01G209400 chr1B 90.511 685 26 10 664 1334 306680933 306680274 0.000000e+00 869.0
18 TraesCS2B01G209400 chr1B 88.981 481 29 5 662 1127 14780264 14779793 9.570000e-160 573.0
19 TraesCS2B01G209400 chr1B 96.279 215 8 0 1120 1334 14779199 14778985 1.360000e-93 353.0
20 TraesCS2B01G209400 chr1B 95.070 142 7 0 935 1076 198555992 198556133 1.110000e-54 224.0
21 TraesCS2B01G209400 chr5A 97.616 1762 39 1 1316 3077 112142573 112140815 0.000000e+00 3018.0
22 TraesCS2B01G209400 chr5A 92.500 680 33 6 662 1334 112143193 112142525 0.000000e+00 957.0
23 TraesCS2B01G209400 chr5A 84.355 620 62 14 1300 1910 624112622 624113215 2.660000e-160 575.0
24 TraesCS2B01G209400 chr5A 92.222 90 2 2 1975 2059 624113349 624113438 4.170000e-24 122.0
25 TraesCS2B01G209400 chr6B 97.276 1762 42 2 1316 3077 31075137 31073382 0.000000e+00 2983.0
26 TraesCS2B01G209400 chr6B 91.210 694 30 6 663 1334 144853974 144854658 0.000000e+00 915.0
27 TraesCS2B01G209400 chr6B 93.014 501 26 1 834 1334 31075580 31075089 0.000000e+00 723.0
28 TraesCS2B01G209400 chr6B 98.293 410 6 1 1 410 319453998 319454406 0.000000e+00 717.0
29 TraesCS2B01G209400 chr6B 94.891 137 7 0 1310 1446 144854604 144854740 6.680000e-52 215.0
30 TraesCS2B01G209400 chr3B 98.460 1039 13 1 2039 3077 807233579 807234614 0.000000e+00 1827.0
31 TraesCS2B01G209400 chr3B 96.581 702 23 1 1310 2010 807232884 807233585 0.000000e+00 1162.0
32 TraesCS2B01G209400 chr3B 92.321 599 23 5 663 1251 807231797 807232382 0.000000e+00 830.0
33 TraesCS2B01G209400 chr3B 89.655 464 28 8 663 1107 145471000 145470538 9.570000e-160 573.0
34 TraesCS2B01G209400 chrUn 97.011 435 13 0 2643 3077 283592860 283593294 0.000000e+00 732.0
35 TraesCS2B01G209400 chrUn 91.255 526 31 5 662 1183 283591535 283592049 0.000000e+00 702.0
36 TraesCS2B01G209400 chr7B 97.837 416 6 2 1 413 233704696 233704281 0.000000e+00 715.0
37 TraesCS2B01G209400 chr7B 98.030 406 8 0 1 406 443736053 443736458 0.000000e+00 706.0
38 TraesCS2B01G209400 chr7B 92.955 440 26 2 2643 3077 584641884 584641445 1.200000e-178 636.0
39 TraesCS2B01G209400 chr7B 90.323 62 4 2 829 890 687450736 687450677 2.540000e-11 80.5
40 TraesCS2B01G209400 chr7B 90.323 62 3 3 829 890 442057171 442057113 9.150000e-11 78.7
41 TraesCS2B01G209400 chr6A 97.810 411 7 1 1 409 538053909 538054319 0.000000e+00 708.0
42 TraesCS2B01G209400 chr3D 95.227 440 16 2 2643 3077 424489179 424489618 0.000000e+00 691.0
43 TraesCS2B01G209400 chr4D 95.116 389 16 1 2257 2645 2861272 2861657 7.290000e-171 610.0
44 TraesCS2B01G209400 chr4D 86.567 201 8 4 2078 2259 2860380 2860580 1.450000e-48 204.0
45 TraesCS2B01G209400 chr4B 94.898 392 17 1 2257 2648 28238561 28238173 7.290000e-171 610.0
46 TraesCS2B01G209400 chr4B 87.879 198 9 4 2061 2243 28239753 28239556 5.170000e-53 219.0
47 TraesCS2B01G209400 chr4B 84.663 163 13 2 956 1118 144348947 144348797 5.310000e-33 152.0
48 TraesCS2B01G209400 chr4B 92.157 51 3 1 840 890 519319338 519319387 1.530000e-08 71.3
49 TraesCS2B01G209400 chr2A 90.114 263 21 5 406 664 142706416 142706155 1.370000e-88 337.0
50 TraesCS2B01G209400 chr2A 83.770 191 19 8 2055 2241 21167985 21167803 1.470000e-38 171.0
51 TraesCS2B01G209400 chr2D 88.583 254 17 6 411 664 134789558 134789317 6.450000e-77 298.0
52 TraesCS2B01G209400 chr2D 82.723 191 21 8 2055 2241 20333184 20333366 3.180000e-35 159.0
53 TraesCS2B01G209400 chr2D 94.118 51 3 0 840 890 537497325 537497275 9.150000e-11 78.7
54 TraesCS2B01G209400 chr5D 89.130 184 17 1 1310 1493 499683889 499684069 3.090000e-55 226.0
55 TraesCS2B01G209400 chr5D 91.228 57 1 1 2003 2059 499684135 499684187 1.180000e-09 75.0
56 TraesCS2B01G209400 chr4A 90.816 98 9 0 965 1062 650320789 650320886 6.920000e-27 132.0
57 TraesCS2B01G209400 chr1D 91.228 57 4 1 834 890 371675784 371675839 3.290000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G209400 chr2B 191735829 191738905 3076 True 5683.000000 5683 100.000000 1 3077 1 chr2B.!!$R1 3076
1 TraesCS2B01G209400 chr5B 549714024 549716429 2405 False 3949.000000 3949 96.257000 662 3077 1 chr5B.!!$F4 2415
2 TraesCS2B01G209400 chr5B 513728180 513728946 766 True 556.500000 898 93.480500 663 1446 2 chr5B.!!$R2 783
3 TraesCS2B01G209400 chr5B 620947885 620948777 892 False 487.000000 802 88.465000 1117 2058 2 chr5B.!!$F5 941
4 TraesCS2B01G209400 chr1B 507364234 507366618 2384 True 2012.500000 3046 95.451500 663 3077 2 chr1B.!!$R3 2414
5 TraesCS2B01G209400 chr1B 306678863 306680933 2070 True 1670.000000 2471 93.854500 664 2778 2 chr1B.!!$R2 2114
6 TraesCS2B01G209400 chr1B 14777267 14780264 2997 True 1309.666667 3003 94.220333 662 3077 3 chr1B.!!$R1 2415
7 TraesCS2B01G209400 chr5A 112140815 112143193 2378 True 1987.500000 3018 95.058000 662 3077 2 chr5A.!!$R1 2415
8 TraesCS2B01G209400 chr5A 624112622 624113438 816 False 348.500000 575 88.288500 1300 2059 2 chr5A.!!$F1 759
9 TraesCS2B01G209400 chr6B 31073382 31075580 2198 True 1853.000000 2983 95.145000 834 3077 2 chr6B.!!$R1 2243
10 TraesCS2B01G209400 chr6B 144853974 144854740 766 False 565.000000 915 93.050500 663 1446 2 chr6B.!!$F2 783
11 TraesCS2B01G209400 chr3B 807231797 807234614 2817 False 1273.000000 1827 95.787333 663 3077 3 chr3B.!!$F1 2414
12 TraesCS2B01G209400 chrUn 283591535 283593294 1759 False 717.000000 732 94.133000 662 3077 2 chrUn.!!$F1 2415
13 TraesCS2B01G209400 chr4D 2860380 2861657 1277 False 407.000000 610 90.841500 2078 2645 2 chr4D.!!$F1 567
14 TraesCS2B01G209400 chr4B 28238173 28239753 1580 True 414.500000 610 91.388500 2061 2648 2 chr4B.!!$R2 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
152 153 0.025001 GTTATGCACTAGCGCGTGTG 59.975 55.0 24.38 24.38 46.23 3.82 F
541 542 0.035056 GCATACTGGGGTGCACTTCT 60.035 55.0 17.98 0.00 40.94 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1546 3112 0.032130 GATCGATCAAGCTACGGCCA 59.968 55.0 20.52 0.0 39.73 5.36 R
2115 3827 2.882927 ATACGCTCGGCAGAACAATA 57.117 45.0 0.00 0.0 0.00 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.749076 TGCCAGTAATGTTCTGTGATGC 59.251 45.455 0.00 0.00 0.00 3.91
23 24 3.012518 GCCAGTAATGTTCTGTGATGCT 58.987 45.455 0.00 0.00 0.00 3.79
24 25 3.064545 GCCAGTAATGTTCTGTGATGCTC 59.935 47.826 0.00 0.00 0.00 4.26
25 26 4.511527 CCAGTAATGTTCTGTGATGCTCT 58.488 43.478 0.00 0.00 0.00 4.09
26 27 4.331992 CCAGTAATGTTCTGTGATGCTCTG 59.668 45.833 0.00 0.00 0.00 3.35
27 28 5.173664 CAGTAATGTTCTGTGATGCTCTGA 58.826 41.667 0.00 0.00 0.00 3.27
28 29 5.816258 CAGTAATGTTCTGTGATGCTCTGAT 59.184 40.000 0.00 0.00 0.00 2.90
30 31 2.353323 TGTTCTGTGATGCTCTGATGC 58.647 47.619 0.00 0.00 0.00 3.91
32 33 2.019948 TCTGTGATGCTCTGATGCAC 57.980 50.000 0.00 0.00 46.33 4.57
34 35 2.027469 TCTGTGATGCTCTGATGCACTT 60.027 45.455 0.00 0.00 46.33 3.16
35 36 2.747989 CTGTGATGCTCTGATGCACTTT 59.252 45.455 0.00 0.00 46.33 2.66
36 37 2.486592 TGTGATGCTCTGATGCACTTTG 59.513 45.455 0.00 0.00 46.33 2.77
37 38 2.089201 TGATGCTCTGATGCACTTTGG 58.911 47.619 0.00 0.00 46.33 3.28
38 39 1.404391 GATGCTCTGATGCACTTTGGG 59.596 52.381 0.00 0.00 46.33 4.12
39 40 0.401356 TGCTCTGATGCACTTTGGGA 59.599 50.000 0.00 0.00 38.12 4.37
40 41 1.202915 TGCTCTGATGCACTTTGGGAA 60.203 47.619 0.00 0.00 38.12 3.97
41 42 2.097825 GCTCTGATGCACTTTGGGAAT 58.902 47.619 0.00 0.00 0.00 3.01
42 43 2.494870 GCTCTGATGCACTTTGGGAATT 59.505 45.455 0.00 0.00 0.00 2.17
43 44 3.675228 GCTCTGATGCACTTTGGGAATTG 60.675 47.826 0.00 0.00 0.00 2.32
44 45 2.827322 TCTGATGCACTTTGGGAATTGG 59.173 45.455 0.00 0.00 0.00 3.16
45 46 2.564062 CTGATGCACTTTGGGAATTGGT 59.436 45.455 0.00 0.00 0.00 3.67
46 47 2.971330 TGATGCACTTTGGGAATTGGTT 59.029 40.909 0.00 0.00 0.00 3.67
47 48 4.155709 TGATGCACTTTGGGAATTGGTTA 58.844 39.130 0.00 0.00 0.00 2.85
48 49 4.776837 TGATGCACTTTGGGAATTGGTTAT 59.223 37.500 0.00 0.00 0.00 1.89
49 50 4.799564 TGCACTTTGGGAATTGGTTATC 57.200 40.909 0.00 0.00 0.00 1.75
50 51 4.415596 TGCACTTTGGGAATTGGTTATCT 58.584 39.130 0.00 0.00 0.00 1.98
51 52 4.837860 TGCACTTTGGGAATTGGTTATCTT 59.162 37.500 0.00 0.00 0.00 2.40
52 53 5.170748 GCACTTTGGGAATTGGTTATCTTG 58.829 41.667 0.00 0.00 0.00 3.02
53 54 5.279456 GCACTTTGGGAATTGGTTATCTTGT 60.279 40.000 0.00 0.00 0.00 3.16
54 55 6.389906 CACTTTGGGAATTGGTTATCTTGTC 58.610 40.000 0.00 0.00 0.00 3.18
55 56 6.209391 CACTTTGGGAATTGGTTATCTTGTCT 59.791 38.462 0.00 0.00 0.00 3.41
56 57 6.782494 ACTTTGGGAATTGGTTATCTTGTCTT 59.218 34.615 0.00 0.00 0.00 3.01
57 58 6.834168 TTGGGAATTGGTTATCTTGTCTTC 57.166 37.500 0.00 0.00 0.00 2.87
58 59 5.886609 TGGGAATTGGTTATCTTGTCTTCA 58.113 37.500 0.00 0.00 0.00 3.02
59 60 5.945784 TGGGAATTGGTTATCTTGTCTTCAG 59.054 40.000 0.00 0.00 0.00 3.02
60 61 5.946377 GGGAATTGGTTATCTTGTCTTCAGT 59.054 40.000 0.00 0.00 0.00 3.41
61 62 6.127897 GGGAATTGGTTATCTTGTCTTCAGTG 60.128 42.308 0.00 0.00 0.00 3.66
62 63 5.886960 ATTGGTTATCTTGTCTTCAGTGC 57.113 39.130 0.00 0.00 0.00 4.40
63 64 4.350368 TGGTTATCTTGTCTTCAGTGCA 57.650 40.909 0.00 0.00 0.00 4.57
64 65 4.910195 TGGTTATCTTGTCTTCAGTGCAT 58.090 39.130 0.00 0.00 0.00 3.96
65 66 6.048732 TGGTTATCTTGTCTTCAGTGCATA 57.951 37.500 0.00 0.00 0.00 3.14
66 67 6.472016 TGGTTATCTTGTCTTCAGTGCATAA 58.528 36.000 0.00 0.00 0.00 1.90
67 68 6.371548 TGGTTATCTTGTCTTCAGTGCATAAC 59.628 38.462 0.00 0.00 0.00 1.89
68 69 6.371548 GGTTATCTTGTCTTCAGTGCATAACA 59.628 38.462 0.00 0.00 30.37 2.41
69 70 7.066284 GGTTATCTTGTCTTCAGTGCATAACAT 59.934 37.037 0.00 0.00 30.37 2.71
70 71 8.454106 GTTATCTTGTCTTCAGTGCATAACATT 58.546 33.333 0.00 0.00 0.00 2.71
71 72 6.882610 TCTTGTCTTCAGTGCATAACATTT 57.117 33.333 0.00 0.00 0.00 2.32
72 73 6.671190 TCTTGTCTTCAGTGCATAACATTTG 58.329 36.000 0.00 0.00 0.00 2.32
73 74 6.262944 TCTTGTCTTCAGTGCATAACATTTGT 59.737 34.615 0.00 0.00 0.00 2.83
74 75 6.389830 TGTCTTCAGTGCATAACATTTGTT 57.610 33.333 1.08 1.08 41.73 2.83
75 76 6.804677 TGTCTTCAGTGCATAACATTTGTTT 58.195 32.000 0.63 0.00 39.31 2.83
76 77 7.935520 TGTCTTCAGTGCATAACATTTGTTTA 58.064 30.769 0.63 0.00 39.31 2.01
77 78 8.575589 TGTCTTCAGTGCATAACATTTGTTTAT 58.424 29.630 0.63 0.00 39.31 1.40
78 79 9.410556 GTCTTCAGTGCATAACATTTGTTTATT 57.589 29.630 0.63 0.00 39.31 1.40
83 84 9.904647 CAGTGCATAACATTTGTTTATTAATGC 57.095 29.630 15.97 15.97 41.61 3.56
84 85 9.650539 AGTGCATAACATTTGTTTATTAATGCA 57.349 25.926 19.34 19.34 45.21 3.96
97 98 9.412460 TGTTTATTAATGCATGAGAAGAATCCT 57.588 29.630 0.00 0.00 0.00 3.24
100 101 7.893124 ATTAATGCATGAGAAGAATCCTTGT 57.107 32.000 0.00 0.00 31.62 3.16
101 102 7.707624 TTAATGCATGAGAAGAATCCTTGTT 57.292 32.000 0.00 0.00 31.62 2.83
102 103 8.806429 TTAATGCATGAGAAGAATCCTTGTTA 57.194 30.769 0.00 0.00 31.62 2.41
103 104 6.690194 ATGCATGAGAAGAATCCTTGTTAC 57.310 37.500 0.00 0.00 31.62 2.50
104 105 5.809001 TGCATGAGAAGAATCCTTGTTACT 58.191 37.500 0.00 0.00 31.62 2.24
105 106 6.946340 TGCATGAGAAGAATCCTTGTTACTA 58.054 36.000 0.00 0.00 31.62 1.82
106 107 6.818644 TGCATGAGAAGAATCCTTGTTACTAC 59.181 38.462 0.00 0.00 31.62 2.73
107 108 6.258947 GCATGAGAAGAATCCTTGTTACTACC 59.741 42.308 0.00 0.00 31.62 3.18
108 109 7.560368 CATGAGAAGAATCCTTGTTACTACCT 58.440 38.462 0.00 0.00 31.62 3.08
109 110 7.554959 TGAGAAGAATCCTTGTTACTACCTT 57.445 36.000 0.00 0.00 31.62 3.50
110 111 7.386851 TGAGAAGAATCCTTGTTACTACCTTG 58.613 38.462 0.00 0.00 31.62 3.61
111 112 7.234782 TGAGAAGAATCCTTGTTACTACCTTGA 59.765 37.037 0.00 0.00 31.62 3.02
112 113 7.974504 AGAAGAATCCTTGTTACTACCTTGAA 58.025 34.615 0.00 0.00 31.62 2.69
113 114 7.878644 AGAAGAATCCTTGTTACTACCTTGAAC 59.121 37.037 0.00 0.00 31.62 3.18
114 115 6.473758 AGAATCCTTGTTACTACCTTGAACC 58.526 40.000 0.00 0.00 0.00 3.62
115 116 6.272558 AGAATCCTTGTTACTACCTTGAACCT 59.727 38.462 0.00 0.00 0.00 3.50
116 117 5.223449 TCCTTGTTACTACCTTGAACCTG 57.777 43.478 0.00 0.00 0.00 4.00
117 118 4.657039 TCCTTGTTACTACCTTGAACCTGT 59.343 41.667 0.00 0.00 0.00 4.00
118 119 5.131475 TCCTTGTTACTACCTTGAACCTGTT 59.869 40.000 0.00 0.00 0.00 3.16
119 120 5.826208 CCTTGTTACTACCTTGAACCTGTTT 59.174 40.000 0.00 0.00 0.00 2.83
120 121 6.320418 CCTTGTTACTACCTTGAACCTGTTTT 59.680 38.462 0.00 0.00 0.00 2.43
121 122 7.499895 CCTTGTTACTACCTTGAACCTGTTTTA 59.500 37.037 0.00 0.00 0.00 1.52
122 123 8.983702 TTGTTACTACCTTGAACCTGTTTTAT 57.016 30.769 0.00 0.00 0.00 1.40
127 128 8.803397 ACTACCTTGAACCTGTTTTATAATCC 57.197 34.615 0.00 0.00 0.00 3.01
128 129 8.387813 ACTACCTTGAACCTGTTTTATAATCCA 58.612 33.333 0.00 0.00 0.00 3.41
129 130 9.408648 CTACCTTGAACCTGTTTTATAATCCAT 57.591 33.333 0.00 0.00 0.00 3.41
131 132 9.936329 ACCTTGAACCTGTTTTATAATCCATAT 57.064 29.630 0.00 0.00 0.00 1.78
146 147 6.486253 AATCCATATTGTTATGCACTAGCG 57.514 37.500 0.00 0.00 46.23 4.26
147 148 3.745975 TCCATATTGTTATGCACTAGCGC 59.254 43.478 0.00 0.00 46.23 5.92
148 149 3.423515 CCATATTGTTATGCACTAGCGCG 60.424 47.826 0.00 0.00 46.23 6.86
149 150 1.651987 ATTGTTATGCACTAGCGCGT 58.348 45.000 8.43 2.53 46.23 6.01
150 151 0.718904 TTGTTATGCACTAGCGCGTG 59.281 50.000 8.43 10.64 46.23 5.34
151 152 0.389296 TGTTATGCACTAGCGCGTGT 60.389 50.000 15.40 9.55 46.23 4.49
152 153 0.025001 GTTATGCACTAGCGCGTGTG 59.975 55.000 24.38 24.38 46.23 3.82
164 165 3.274196 GCGTGTGCGTGTGAAATAG 57.726 52.632 0.00 0.00 40.81 1.73
165 166 0.787787 GCGTGTGCGTGTGAAATAGA 59.212 50.000 0.00 0.00 40.81 1.98
166 167 1.393539 GCGTGTGCGTGTGAAATAGAT 59.606 47.619 0.00 0.00 40.81 1.98
167 168 2.784327 GCGTGTGCGTGTGAAATAGATG 60.784 50.000 0.00 0.00 40.81 2.90
168 169 2.222796 CGTGTGCGTGTGAAATAGATGG 60.223 50.000 0.00 0.00 0.00 3.51
169 170 3.000041 GTGTGCGTGTGAAATAGATGGA 59.000 45.455 0.00 0.00 0.00 3.41
170 171 3.623060 GTGTGCGTGTGAAATAGATGGAT 59.377 43.478 0.00 0.00 0.00 3.41
171 172 4.094887 GTGTGCGTGTGAAATAGATGGATT 59.905 41.667 0.00 0.00 0.00 3.01
172 173 5.293324 GTGTGCGTGTGAAATAGATGGATTA 59.707 40.000 0.00 0.00 0.00 1.75
173 174 6.017934 GTGTGCGTGTGAAATAGATGGATTAT 60.018 38.462 0.00 0.00 0.00 1.28
174 175 6.018016 TGTGCGTGTGAAATAGATGGATTATG 60.018 38.462 0.00 0.00 0.00 1.90
175 176 5.469760 TGCGTGTGAAATAGATGGATTATGG 59.530 40.000 0.00 0.00 0.00 2.74
176 177 5.470098 GCGTGTGAAATAGATGGATTATGGT 59.530 40.000 0.00 0.00 0.00 3.55
177 178 6.347725 GCGTGTGAAATAGATGGATTATGGTC 60.348 42.308 0.00 0.00 0.00 4.02
178 179 6.147821 CGTGTGAAATAGATGGATTATGGTCC 59.852 42.308 0.00 0.00 38.81 4.46
179 180 6.431234 GTGTGAAATAGATGGATTATGGTCCC 59.569 42.308 0.00 0.00 37.48 4.46
180 181 5.643777 GTGAAATAGATGGATTATGGTCCCG 59.356 44.000 0.00 0.00 37.48 5.14
181 182 5.309543 TGAAATAGATGGATTATGGTCCCGT 59.690 40.000 0.00 0.00 37.48 5.28
182 183 6.499000 TGAAATAGATGGATTATGGTCCCGTA 59.501 38.462 0.00 0.00 37.48 4.02
183 184 5.934402 ATAGATGGATTATGGTCCCGTAC 57.066 43.478 0.00 0.00 37.48 3.67
194 195 3.121738 GGTCCCGTACCCAATAAGATG 57.878 52.381 0.00 0.00 43.16 2.90
195 196 2.224450 GGTCCCGTACCCAATAAGATGG 60.224 54.545 0.00 0.00 43.16 3.51
196 197 2.701951 GTCCCGTACCCAATAAGATGGA 59.298 50.000 0.00 0.00 43.54 3.41
197 198 3.326880 GTCCCGTACCCAATAAGATGGAT 59.673 47.826 0.00 0.00 43.54 3.41
198 199 4.529377 GTCCCGTACCCAATAAGATGGATA 59.471 45.833 0.00 0.00 43.54 2.59
199 200 5.189145 GTCCCGTACCCAATAAGATGGATAT 59.811 44.000 0.00 0.00 43.54 1.63
200 201 5.188948 TCCCGTACCCAATAAGATGGATATG 59.811 44.000 0.00 0.00 43.54 1.78
201 202 5.045869 CCCGTACCCAATAAGATGGATATGT 60.046 44.000 0.00 0.00 43.54 2.29
202 203 5.874810 CCGTACCCAATAAGATGGATATGTG 59.125 44.000 0.00 0.00 43.54 3.21
203 204 6.464222 CGTACCCAATAAGATGGATATGTGT 58.536 40.000 0.00 0.00 43.54 3.72
204 205 6.368791 CGTACCCAATAAGATGGATATGTGTG 59.631 42.308 0.00 0.00 43.54 3.82
205 206 6.266131 ACCCAATAAGATGGATATGTGTGT 57.734 37.500 0.00 0.00 43.54 3.72
206 207 6.064060 ACCCAATAAGATGGATATGTGTGTG 58.936 40.000 0.00 0.00 43.54 3.82
207 208 6.064060 CCCAATAAGATGGATATGTGTGTGT 58.936 40.000 0.00 0.00 43.54 3.72
208 209 6.016860 CCCAATAAGATGGATATGTGTGTGTG 60.017 42.308 0.00 0.00 43.54 3.82
209 210 6.543465 CCAATAAGATGGATATGTGTGTGTGT 59.457 38.462 0.00 0.00 43.54 3.72
210 211 7.067372 CCAATAAGATGGATATGTGTGTGTGTT 59.933 37.037 0.00 0.00 43.54 3.32
211 212 9.108284 CAATAAGATGGATATGTGTGTGTGTTA 57.892 33.333 0.00 0.00 0.00 2.41
212 213 8.893219 ATAAGATGGATATGTGTGTGTGTTAG 57.107 34.615 0.00 0.00 0.00 2.34
213 214 6.544928 AGATGGATATGTGTGTGTGTTAGA 57.455 37.500 0.00 0.00 0.00 2.10
214 215 6.577103 AGATGGATATGTGTGTGTGTTAGAG 58.423 40.000 0.00 0.00 0.00 2.43
215 216 5.993748 TGGATATGTGTGTGTGTTAGAGA 57.006 39.130 0.00 0.00 0.00 3.10
216 217 5.965922 TGGATATGTGTGTGTGTTAGAGAG 58.034 41.667 0.00 0.00 0.00 3.20
217 218 5.714806 TGGATATGTGTGTGTGTTAGAGAGA 59.285 40.000 0.00 0.00 0.00 3.10
218 219 6.127619 TGGATATGTGTGTGTGTTAGAGAGAG 60.128 42.308 0.00 0.00 0.00 3.20
219 220 6.095580 GGATATGTGTGTGTGTTAGAGAGAGA 59.904 42.308 0.00 0.00 0.00 3.10
220 221 4.837896 TGTGTGTGTGTTAGAGAGAGAG 57.162 45.455 0.00 0.00 0.00 3.20
221 222 4.461198 TGTGTGTGTGTTAGAGAGAGAGA 58.539 43.478 0.00 0.00 0.00 3.10
222 223 4.517075 TGTGTGTGTGTTAGAGAGAGAGAG 59.483 45.833 0.00 0.00 0.00 3.20
223 224 4.757657 GTGTGTGTGTTAGAGAGAGAGAGA 59.242 45.833 0.00 0.00 0.00 3.10
224 225 5.000591 TGTGTGTGTTAGAGAGAGAGAGAG 58.999 45.833 0.00 0.00 0.00 3.20
225 226 4.394920 GTGTGTGTTAGAGAGAGAGAGAGG 59.605 50.000 0.00 0.00 0.00 3.69
226 227 3.945285 GTGTGTTAGAGAGAGAGAGAGGG 59.055 52.174 0.00 0.00 0.00 4.30
227 228 3.847184 TGTGTTAGAGAGAGAGAGAGGGA 59.153 47.826 0.00 0.00 0.00 4.20
228 229 4.080582 TGTGTTAGAGAGAGAGAGAGGGAG 60.081 50.000 0.00 0.00 0.00 4.30
229 230 4.163458 GTGTTAGAGAGAGAGAGAGGGAGA 59.837 50.000 0.00 0.00 0.00 3.71
230 231 4.408921 TGTTAGAGAGAGAGAGAGGGAGAG 59.591 50.000 0.00 0.00 0.00 3.20
231 232 2.412591 AGAGAGAGAGAGAGGGAGAGG 58.587 57.143 0.00 0.00 0.00 3.69
232 233 1.421646 GAGAGAGAGAGAGGGAGAGGG 59.578 61.905 0.00 0.00 0.00 4.30
233 234 0.478507 GAGAGAGAGAGGGAGAGGGG 59.521 65.000 0.00 0.00 0.00 4.79
234 235 0.998945 AGAGAGAGAGGGAGAGGGGG 60.999 65.000 0.00 0.00 0.00 5.40
235 236 0.996762 GAGAGAGAGGGAGAGGGGGA 60.997 65.000 0.00 0.00 0.00 4.81
236 237 0.998945 AGAGAGAGGGAGAGGGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
237 238 0.996762 GAGAGAGGGAGAGGGGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
238 239 0.998945 AGAGAGGGAGAGGGGGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
239 240 0.996762 GAGAGGGAGAGGGGGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
240 241 0.998945 AGAGGGAGAGGGGGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
241 242 0.996762 GAGGGAGAGGGGGAGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
242 243 0.998945 AGGGAGAGGGGGAGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
243 244 1.293683 GGGAGAGGGGGAGAGAGAGT 61.294 65.000 0.00 0.00 0.00 3.24
244 245 0.106217 GGAGAGGGGGAGAGAGAGTG 60.106 65.000 0.00 0.00 0.00 3.51
245 246 0.923358 GAGAGGGGGAGAGAGAGTGA 59.077 60.000 0.00 0.00 0.00 3.41
246 247 0.926293 AGAGGGGGAGAGAGAGTGAG 59.074 60.000 0.00 0.00 0.00 3.51
247 248 0.106217 GAGGGGGAGAGAGAGTGAGG 60.106 65.000 0.00 0.00 0.00 3.86
248 249 0.553862 AGGGGGAGAGAGAGTGAGGA 60.554 60.000 0.00 0.00 0.00 3.71
249 250 0.106217 GGGGGAGAGAGAGTGAGGAG 60.106 65.000 0.00 0.00 0.00 3.69
250 251 0.106217 GGGGAGAGAGAGTGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
251 252 0.923358 GGGAGAGAGAGTGAGGAGGA 59.077 60.000 0.00 0.00 0.00 3.71
252 253 1.133792 GGGAGAGAGAGTGAGGAGGAG 60.134 61.905 0.00 0.00 0.00 3.69
253 254 1.133792 GGAGAGAGAGTGAGGAGGAGG 60.134 61.905 0.00 0.00 0.00 4.30
254 255 0.926293 AGAGAGAGTGAGGAGGAGGG 59.074 60.000 0.00 0.00 0.00 4.30
255 256 0.923358 GAGAGAGTGAGGAGGAGGGA 59.077 60.000 0.00 0.00 0.00 4.20
256 257 0.926293 AGAGAGTGAGGAGGAGGGAG 59.074 60.000 0.00 0.00 0.00 4.30
257 258 0.106217 GAGAGTGAGGAGGAGGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
258 259 1.075600 GAGTGAGGAGGAGGGAGGG 60.076 68.421 0.00 0.00 0.00 4.30
259 260 1.547755 AGTGAGGAGGAGGGAGGGA 60.548 63.158 0.00 0.00 0.00 4.20
260 261 1.075600 GTGAGGAGGAGGGAGGGAG 60.076 68.421 0.00 0.00 0.00 4.30
261 262 1.230650 TGAGGAGGAGGGAGGGAGA 60.231 63.158 0.00 0.00 0.00 3.71
262 263 1.292941 TGAGGAGGAGGGAGGGAGAG 61.293 65.000 0.00 0.00 0.00 3.20
263 264 0.996762 GAGGAGGAGGGAGGGAGAGA 60.997 65.000 0.00 0.00 0.00 3.10
264 265 0.998945 AGGAGGAGGGAGGGAGAGAG 60.999 65.000 0.00 0.00 0.00 3.20
265 266 1.293683 GGAGGAGGGAGGGAGAGAGT 61.294 65.000 0.00 0.00 0.00 3.24
266 267 0.106217 GAGGAGGGAGGGAGAGAGTG 60.106 65.000 0.00 0.00 0.00 3.51
267 268 0.853586 AGGAGGGAGGGAGAGAGTGT 60.854 60.000 0.00 0.00 0.00 3.55
268 269 0.686112 GGAGGGAGGGAGAGAGTGTG 60.686 65.000 0.00 0.00 0.00 3.82
269 270 0.040499 GAGGGAGGGAGAGAGTGTGT 59.960 60.000 0.00 0.00 0.00 3.72
270 271 0.252012 AGGGAGGGAGAGAGTGTGTG 60.252 60.000 0.00 0.00 0.00 3.82
271 272 0.543174 GGGAGGGAGAGAGTGTGTGT 60.543 60.000 0.00 0.00 0.00 3.72
272 273 0.605589 GGAGGGAGAGAGTGTGTGTG 59.394 60.000 0.00 0.00 0.00 3.82
273 274 1.621992 GAGGGAGAGAGTGTGTGTGA 58.378 55.000 0.00 0.00 0.00 3.58
274 275 1.543802 GAGGGAGAGAGTGTGTGTGAG 59.456 57.143 0.00 0.00 0.00 3.51
275 276 1.145945 AGGGAGAGAGTGTGTGTGAGA 59.854 52.381 0.00 0.00 0.00 3.27
276 277 1.964223 GGGAGAGAGTGTGTGTGAGAA 59.036 52.381 0.00 0.00 0.00 2.87
277 278 2.564947 GGGAGAGAGTGTGTGTGAGAAT 59.435 50.000 0.00 0.00 0.00 2.40
278 279 3.007398 GGGAGAGAGTGTGTGTGAGAATT 59.993 47.826 0.00 0.00 0.00 2.17
279 280 4.503991 GGGAGAGAGTGTGTGTGAGAATTT 60.504 45.833 0.00 0.00 0.00 1.82
280 281 4.450419 GGAGAGAGTGTGTGTGAGAATTTG 59.550 45.833 0.00 0.00 0.00 2.32
281 282 5.282055 AGAGAGTGTGTGTGAGAATTTGA 57.718 39.130 0.00 0.00 0.00 2.69
282 283 5.862845 AGAGAGTGTGTGTGAGAATTTGAT 58.137 37.500 0.00 0.00 0.00 2.57
283 284 5.699915 AGAGAGTGTGTGTGAGAATTTGATG 59.300 40.000 0.00 0.00 0.00 3.07
284 285 4.758674 AGAGTGTGTGTGAGAATTTGATGG 59.241 41.667 0.00 0.00 0.00 3.51
285 286 4.464008 AGTGTGTGTGAGAATTTGATGGT 58.536 39.130 0.00 0.00 0.00 3.55
286 287 5.620206 AGTGTGTGTGAGAATTTGATGGTA 58.380 37.500 0.00 0.00 0.00 3.25
287 288 6.061441 AGTGTGTGTGAGAATTTGATGGTAA 58.939 36.000 0.00 0.00 0.00 2.85
288 289 6.545666 AGTGTGTGTGAGAATTTGATGGTAAA 59.454 34.615 0.00 0.00 0.00 2.01
289 290 7.068103 AGTGTGTGTGAGAATTTGATGGTAAAA 59.932 33.333 0.00 0.00 0.00 1.52
290 291 7.704472 GTGTGTGTGAGAATTTGATGGTAAAAA 59.296 33.333 0.00 0.00 0.00 1.94
291 292 7.920151 TGTGTGTGAGAATTTGATGGTAAAAAG 59.080 33.333 0.00 0.00 0.00 2.27
292 293 7.382218 GTGTGTGAGAATTTGATGGTAAAAAGG 59.618 37.037 0.00 0.00 0.00 3.11
293 294 7.069331 TGTGTGAGAATTTGATGGTAAAAAGGT 59.931 33.333 0.00 0.00 0.00 3.50
294 295 7.595130 GTGTGAGAATTTGATGGTAAAAAGGTC 59.405 37.037 0.00 0.00 0.00 3.85
295 296 6.801862 GTGAGAATTTGATGGTAAAAAGGTCG 59.198 38.462 0.00 0.00 0.00 4.79
296 297 6.488683 TGAGAATTTGATGGTAAAAAGGTCGT 59.511 34.615 0.00 0.00 0.00 4.34
297 298 6.909909 AGAATTTGATGGTAAAAAGGTCGTC 58.090 36.000 0.00 0.00 0.00 4.20
298 299 6.488683 AGAATTTGATGGTAAAAAGGTCGTCA 59.511 34.615 0.00 0.00 0.00 4.35
299 300 6.642707 ATTTGATGGTAAAAAGGTCGTCAA 57.357 33.333 0.00 0.00 34.54 3.18
300 301 6.642707 TTTGATGGTAAAAAGGTCGTCAAT 57.357 33.333 0.00 0.00 35.78 2.57
301 302 5.621197 TGATGGTAAAAAGGTCGTCAATG 57.379 39.130 0.00 0.00 0.00 2.82
302 303 5.067273 TGATGGTAAAAAGGTCGTCAATGT 58.933 37.500 0.00 0.00 0.00 2.71
303 304 5.180492 TGATGGTAAAAAGGTCGTCAATGTC 59.820 40.000 0.00 0.00 0.00 3.06
304 305 4.452825 TGGTAAAAAGGTCGTCAATGTCA 58.547 39.130 0.00 0.00 0.00 3.58
305 306 4.273969 TGGTAAAAAGGTCGTCAATGTCAC 59.726 41.667 0.00 0.00 0.00 3.67
306 307 4.514066 GGTAAAAAGGTCGTCAATGTCACT 59.486 41.667 0.00 0.00 0.00 3.41
307 308 5.008316 GGTAAAAAGGTCGTCAATGTCACTT 59.992 40.000 0.00 0.00 0.00 3.16
308 309 4.552166 AAAAGGTCGTCAATGTCACTTG 57.448 40.909 0.00 0.00 0.00 3.16
309 310 3.469008 AAGGTCGTCAATGTCACTTGA 57.531 42.857 0.00 0.00 32.84 3.02
310 311 3.685139 AGGTCGTCAATGTCACTTGAT 57.315 42.857 0.00 0.00 37.47 2.57
311 312 3.329386 AGGTCGTCAATGTCACTTGATG 58.671 45.455 9.29 9.29 41.48 3.07
312 313 3.067106 GGTCGTCAATGTCACTTGATGT 58.933 45.455 12.78 0.00 41.10 3.06
314 315 3.494626 GTCGTCAATGTCACTTGATGTGT 59.505 43.478 12.78 0.00 46.27 3.72
315 316 4.684242 GTCGTCAATGTCACTTGATGTGTA 59.316 41.667 12.78 0.00 46.27 2.90
316 317 5.348724 GTCGTCAATGTCACTTGATGTGTAT 59.651 40.000 12.78 0.00 46.27 2.29
317 318 5.348451 TCGTCAATGTCACTTGATGTGTATG 59.652 40.000 12.78 0.00 46.27 2.39
318 319 5.348451 CGTCAATGTCACTTGATGTGTATGA 59.652 40.000 0.00 0.00 46.27 2.15
319 320 6.454715 CGTCAATGTCACTTGATGTGTATGAG 60.455 42.308 0.00 0.00 46.27 2.90
320 321 6.591448 GTCAATGTCACTTGATGTGTATGAGA 59.409 38.462 0.00 0.00 46.27 3.27
321 322 7.118245 GTCAATGTCACTTGATGTGTATGAGAA 59.882 37.037 0.00 0.00 46.27 2.87
322 323 7.825761 TCAATGTCACTTGATGTGTATGAGAAT 59.174 33.333 0.00 0.00 46.27 2.40
323 324 9.101655 CAATGTCACTTGATGTGTATGAGAATA 57.898 33.333 0.00 0.00 46.27 1.75
324 325 9.842775 AATGTCACTTGATGTGTATGAGAATAT 57.157 29.630 0.00 0.00 46.27 1.28
325 326 9.842775 ATGTCACTTGATGTGTATGAGAATATT 57.157 29.630 0.00 0.00 46.27 1.28
376 377 5.977489 AACTCTTAAAGTTAATGTGGCCC 57.023 39.130 0.00 0.00 46.55 5.80
377 378 5.256806 ACTCTTAAAGTTAATGTGGCCCT 57.743 39.130 0.00 0.00 33.03 5.19
378 379 5.010282 ACTCTTAAAGTTAATGTGGCCCTG 58.990 41.667 0.00 0.00 33.03 4.45
379 380 4.993028 TCTTAAAGTTAATGTGGCCCTGT 58.007 39.130 0.00 0.00 0.00 4.00
380 381 5.390387 TCTTAAAGTTAATGTGGCCCTGTT 58.610 37.500 0.00 0.00 0.00 3.16
381 382 5.242838 TCTTAAAGTTAATGTGGCCCTGTTG 59.757 40.000 0.00 0.00 0.00 3.33
382 383 1.256812 AGTTAATGTGGCCCTGTTGC 58.743 50.000 0.00 0.00 0.00 4.17
383 384 0.965439 GTTAATGTGGCCCTGTTGCA 59.035 50.000 0.00 0.00 0.00 4.08
384 385 1.342819 GTTAATGTGGCCCTGTTGCAA 59.657 47.619 0.00 0.00 0.00 4.08
385 386 0.965439 TAATGTGGCCCTGTTGCAAC 59.035 50.000 22.83 22.83 35.65 4.17
386 387 2.086251 AATGTGGCCCTGTTGCAACG 62.086 55.000 23.79 17.58 38.05 4.10
387 388 4.645921 GTGGCCCTGTTGCAACGC 62.646 66.667 23.79 19.96 0.00 4.84
389 390 4.645921 GGCCCTGTTGCAACGCAC 62.646 66.667 23.79 13.10 38.71 5.34
390 391 4.980903 GCCCTGTTGCAACGCACG 62.981 66.667 23.79 12.32 38.71 5.34
391 392 4.326766 CCCTGTTGCAACGCACGG 62.327 66.667 23.79 19.21 38.71 4.94
392 393 4.326766 CCTGTTGCAACGCACGGG 62.327 66.667 23.79 12.20 38.71 5.28
393 394 3.582120 CTGTTGCAACGCACGGGT 61.582 61.111 23.79 0.00 38.71 5.28
394 395 3.805385 CTGTTGCAACGCACGGGTG 62.805 63.158 23.79 0.00 38.71 4.61
395 396 3.883180 GTTGCAACGCACGGGTGT 61.883 61.111 14.90 0.00 38.71 4.16
397 398 3.114647 TTGCAACGCACGGGTGTTC 62.115 57.895 14.93 9.86 45.51 3.18
398 399 3.276846 GCAACGCACGGGTGTTCT 61.277 61.111 14.93 0.00 45.51 3.01
399 400 2.830285 GCAACGCACGGGTGTTCTT 61.830 57.895 14.93 0.00 45.51 2.52
400 401 1.278637 CAACGCACGGGTGTTCTTC 59.721 57.895 14.93 0.00 45.51 2.87
401 402 1.145377 AACGCACGGGTGTTCTTCT 59.855 52.632 11.62 0.00 44.03 2.85
402 403 0.390124 AACGCACGGGTGTTCTTCTA 59.610 50.000 11.62 0.00 44.03 2.10
403 404 0.038526 ACGCACGGGTGTTCTTCTAG 60.039 55.000 0.00 0.00 32.83 2.43
404 405 0.038526 CGCACGGGTGTTCTTCTAGT 60.039 55.000 0.25 0.00 0.00 2.57
405 406 1.604693 CGCACGGGTGTTCTTCTAGTT 60.605 52.381 0.25 0.00 0.00 2.24
406 407 2.352030 CGCACGGGTGTTCTTCTAGTTA 60.352 50.000 0.25 0.00 0.00 2.24
407 408 3.675228 CGCACGGGTGTTCTTCTAGTTAT 60.675 47.826 0.25 0.00 0.00 1.89
408 409 4.439153 CGCACGGGTGTTCTTCTAGTTATA 60.439 45.833 0.25 0.00 0.00 0.98
409 410 4.802563 GCACGGGTGTTCTTCTAGTTATAC 59.197 45.833 0.25 0.00 0.00 1.47
410 411 5.393896 GCACGGGTGTTCTTCTAGTTATACT 60.394 44.000 0.25 0.00 0.00 2.12
411 412 6.183360 GCACGGGTGTTCTTCTAGTTATACTA 60.183 42.308 0.25 0.00 0.00 1.82
413 414 6.039159 ACGGGTGTTCTTCTAGTTATACTAGC 59.961 42.308 8.63 0.00 45.93 3.42
414 415 6.262720 CGGGTGTTCTTCTAGTTATACTAGCT 59.737 42.308 8.63 0.00 45.93 3.32
415 416 7.520292 CGGGTGTTCTTCTAGTTATACTAGCTC 60.520 44.444 8.63 0.00 45.93 4.09
416 417 7.503230 GGGTGTTCTTCTAGTTATACTAGCTCT 59.497 40.741 8.63 0.00 45.93 4.09
417 418 8.562052 GGTGTTCTTCTAGTTATACTAGCTCTC 58.438 40.741 8.63 1.15 45.93 3.20
418 419 8.562052 GTGTTCTTCTAGTTATACTAGCTCTCC 58.438 40.741 8.63 0.00 45.93 3.71
419 420 8.272889 TGTTCTTCTAGTTATACTAGCTCTCCA 58.727 37.037 8.63 1.81 45.93 3.86
420 421 9.122779 GTTCTTCTAGTTATACTAGCTCTCCAA 57.877 37.037 8.63 0.00 45.93 3.53
421 422 9.869667 TTCTTCTAGTTATACTAGCTCTCCAAT 57.130 33.333 8.63 0.00 45.93 3.16
422 423 9.290988 TCTTCTAGTTATACTAGCTCTCCAATG 57.709 37.037 8.63 0.00 45.93 2.82
423 424 8.410673 TTCTAGTTATACTAGCTCTCCAATGG 57.589 38.462 8.63 0.00 45.93 3.16
424 425 6.948886 TCTAGTTATACTAGCTCTCCAATGGG 59.051 42.308 0.00 0.00 45.93 4.00
425 426 5.716979 AGTTATACTAGCTCTCCAATGGGA 58.283 41.667 0.00 0.00 42.29 4.37
436 437 3.681593 TCCAATGGGAGCAACATTTTG 57.318 42.857 0.00 0.00 38.64 2.44
437 438 2.971330 TCCAATGGGAGCAACATTTTGT 59.029 40.909 0.00 0.00 38.64 2.83
438 439 3.390639 TCCAATGGGAGCAACATTTTGTT 59.609 39.130 0.00 0.00 38.71 2.83
439 440 4.136051 CCAATGGGAGCAACATTTTGTTT 58.864 39.130 0.00 0.00 35.56 2.83
440 441 4.023878 CCAATGGGAGCAACATTTTGTTTG 60.024 41.667 0.00 0.00 35.56 2.93
441 442 3.902881 TGGGAGCAACATTTTGTTTGT 57.097 38.095 0.00 0.00 38.77 2.83
442 443 5.543507 ATGGGAGCAACATTTTGTTTGTA 57.456 34.783 0.00 0.00 38.77 2.41
443 444 5.344743 TGGGAGCAACATTTTGTTTGTAA 57.655 34.783 0.00 0.00 38.77 2.41
444 445 5.923204 TGGGAGCAACATTTTGTTTGTAAT 58.077 33.333 0.00 0.00 38.77 1.89
445 446 5.757320 TGGGAGCAACATTTTGTTTGTAATG 59.243 36.000 0.00 0.00 38.77 1.90
446 447 5.334028 GGGAGCAACATTTTGTTTGTAATGC 60.334 40.000 0.00 0.00 38.77 3.56
447 448 5.327502 AGCAACATTTTGTTTGTAATGCG 57.672 34.783 0.00 0.00 38.77 4.73
448 449 5.046529 AGCAACATTTTGTTTGTAATGCGA 58.953 33.333 0.00 0.00 38.77 5.10
449 450 5.695816 AGCAACATTTTGTTTGTAATGCGAT 59.304 32.000 0.00 0.00 38.77 4.58
450 451 6.202570 AGCAACATTTTGTTTGTAATGCGATT 59.797 30.769 0.00 0.00 38.77 3.34
451 452 7.383572 AGCAACATTTTGTTTGTAATGCGATTA 59.616 29.630 0.00 0.00 38.77 1.75
452 453 8.167985 GCAACATTTTGTTTGTAATGCGATTAT 58.832 29.630 0.00 0.00 38.77 1.28
459 460 8.917415 TTGTTTGTAATGCGATTATTAATGCA 57.083 26.923 12.65 12.65 42.22 3.96
461 462 9.179552 TGTTTGTAATGCGATTATTAATGCATC 57.820 29.630 18.29 5.69 46.60 3.91
462 463 8.638565 GTTTGTAATGCGATTATTAATGCATCC 58.361 33.333 18.29 14.53 46.60 3.51
463 464 7.686438 TGTAATGCGATTATTAATGCATCCT 57.314 32.000 18.29 11.37 46.60 3.24
464 465 8.109705 TGTAATGCGATTATTAATGCATCCTT 57.890 30.769 18.29 11.38 46.60 3.36
465 466 9.225436 TGTAATGCGATTATTAATGCATCCTTA 57.775 29.630 18.29 10.77 46.60 2.69
468 469 7.087409 TGCGATTATTAATGCATCCTTATGG 57.913 36.000 0.00 0.00 33.38 2.74
469 470 7.557358 ATGCGATTATTAATGCATCCTTATGGA 59.443 33.333 0.00 0.00 44.21 3.41
482 483 5.246981 TCCTTATGGATGATGGAATGACC 57.753 43.478 0.00 0.00 37.46 4.02
483 484 4.915809 TCCTTATGGATGATGGAATGACCT 59.084 41.667 0.00 0.00 37.46 3.85
484 485 5.373555 TCCTTATGGATGATGGAATGACCTT 59.626 40.000 0.00 0.00 37.46 3.50
485 486 6.073314 CCTTATGGATGATGGAATGACCTTT 58.927 40.000 0.00 0.00 35.93 3.11
486 487 6.552350 CCTTATGGATGATGGAATGACCTTTT 59.448 38.462 0.00 0.00 35.93 2.27
487 488 7.255730 CCTTATGGATGATGGAATGACCTTTTC 60.256 40.741 0.00 0.00 35.93 2.29
488 489 4.280819 TGGATGATGGAATGACCTTTTCC 58.719 43.478 0.00 0.00 42.52 3.13
489 490 4.017222 TGGATGATGGAATGACCTTTTCCT 60.017 41.667 4.28 0.00 42.63 3.36
490 491 4.958581 GGATGATGGAATGACCTTTTCCTT 59.041 41.667 4.28 0.00 42.63 3.36
491 492 5.163478 GGATGATGGAATGACCTTTTCCTTG 60.163 44.000 4.28 0.00 42.63 3.61
492 493 3.511146 TGATGGAATGACCTTTTCCTTGC 59.489 43.478 4.28 0.00 42.63 4.01
493 494 2.956132 TGGAATGACCTTTTCCTTGCA 58.044 42.857 4.28 0.00 42.63 4.08
494 495 2.627699 TGGAATGACCTTTTCCTTGCAC 59.372 45.455 4.28 0.00 42.63 4.57
495 496 2.627699 GGAATGACCTTTTCCTTGCACA 59.372 45.455 0.00 0.00 39.67 4.57
496 497 3.259123 GGAATGACCTTTTCCTTGCACAT 59.741 43.478 0.00 0.00 39.67 3.21
497 498 3.947910 ATGACCTTTTCCTTGCACATG 57.052 42.857 0.00 0.00 0.00 3.21
498 499 2.942804 TGACCTTTTCCTTGCACATGA 58.057 42.857 0.00 0.00 0.00 3.07
499 500 3.295093 TGACCTTTTCCTTGCACATGAA 58.705 40.909 0.00 0.00 0.00 2.57
500 501 3.703556 TGACCTTTTCCTTGCACATGAAA 59.296 39.130 0.00 0.00 0.00 2.69
501 502 4.344679 TGACCTTTTCCTTGCACATGAAAT 59.655 37.500 0.00 0.00 0.00 2.17
502 503 5.538053 TGACCTTTTCCTTGCACATGAAATA 59.462 36.000 0.00 0.00 0.00 1.40
503 504 6.041409 TGACCTTTTCCTTGCACATGAAATAA 59.959 34.615 0.00 0.00 0.00 1.40
504 505 7.008021 ACCTTTTCCTTGCACATGAAATAAT 57.992 32.000 0.00 0.00 0.00 1.28
505 506 7.452562 ACCTTTTCCTTGCACATGAAATAATT 58.547 30.769 0.00 0.00 0.00 1.40
506 507 7.938490 ACCTTTTCCTTGCACATGAAATAATTT 59.062 29.630 0.00 0.00 0.00 1.82
507 508 9.434420 CCTTTTCCTTGCACATGAAATAATTTA 57.566 29.630 0.00 0.00 0.00 1.40
510 511 9.941325 TTTCCTTGCACATGAAATAATTTATGT 57.059 25.926 0.00 0.00 44.05 2.29
511 512 9.941325 TTCCTTGCACATGAAATAATTTATGTT 57.059 25.926 0.00 0.00 41.45 2.71
512 513 9.941325 TCCTTGCACATGAAATAATTTATGTTT 57.059 25.926 0.00 0.00 41.45 2.83
528 529 8.757982 ATTTATGTTTTCAGATGAGGCATACT 57.242 30.769 0.00 0.00 0.00 2.12
529 530 7.558161 TTATGTTTTCAGATGAGGCATACTG 57.442 36.000 0.00 0.00 0.00 2.74
530 531 4.264253 TGTTTTCAGATGAGGCATACTGG 58.736 43.478 0.00 0.00 0.00 4.00
531 532 3.565764 TTTCAGATGAGGCATACTGGG 57.434 47.619 0.00 0.00 0.00 4.45
532 533 1.427809 TCAGATGAGGCATACTGGGG 58.572 55.000 0.00 0.00 0.00 4.96
533 534 1.135094 CAGATGAGGCATACTGGGGT 58.865 55.000 0.00 0.00 0.00 4.95
534 535 1.135094 AGATGAGGCATACTGGGGTG 58.865 55.000 0.00 0.00 0.00 4.61
535 536 0.536006 GATGAGGCATACTGGGGTGC 60.536 60.000 0.00 0.00 40.55 5.01
536 537 1.281199 ATGAGGCATACTGGGGTGCA 61.281 55.000 0.00 0.00 43.00 4.57
537 538 1.452108 GAGGCATACTGGGGTGCAC 60.452 63.158 8.80 8.80 43.00 4.57
538 539 1.915078 GAGGCATACTGGGGTGCACT 61.915 60.000 17.98 0.00 43.00 4.40
539 540 1.000896 GGCATACTGGGGTGCACTT 60.001 57.895 17.98 0.00 43.00 3.16
540 541 1.032114 GGCATACTGGGGTGCACTTC 61.032 60.000 17.98 9.77 43.00 3.01
541 542 0.035056 GCATACTGGGGTGCACTTCT 60.035 55.000 17.98 0.00 40.94 2.85
542 543 1.614317 GCATACTGGGGTGCACTTCTT 60.614 52.381 17.98 0.29 40.94 2.52
543 544 2.355716 GCATACTGGGGTGCACTTCTTA 60.356 50.000 17.98 2.67 40.94 2.10
544 545 3.872240 GCATACTGGGGTGCACTTCTTAA 60.872 47.826 17.98 0.00 40.94 1.85
545 546 4.526970 CATACTGGGGTGCACTTCTTAAT 58.473 43.478 17.98 1.74 0.00 1.40
546 547 5.680619 CATACTGGGGTGCACTTCTTAATA 58.319 41.667 17.98 1.81 0.00 0.98
547 548 4.650972 ACTGGGGTGCACTTCTTAATAA 57.349 40.909 17.98 0.00 0.00 1.40
548 549 4.993028 ACTGGGGTGCACTTCTTAATAAA 58.007 39.130 17.98 0.00 0.00 1.40
549 550 5.580022 ACTGGGGTGCACTTCTTAATAAAT 58.420 37.500 17.98 0.00 0.00 1.40
550 551 6.016555 ACTGGGGTGCACTTCTTAATAAATT 58.983 36.000 17.98 0.00 0.00 1.82
551 552 6.071391 ACTGGGGTGCACTTCTTAATAAATTG 60.071 38.462 17.98 0.00 0.00 2.32
552 553 5.186797 TGGGGTGCACTTCTTAATAAATTGG 59.813 40.000 17.98 0.00 0.00 3.16
553 554 5.395214 GGGGTGCACTTCTTAATAAATTGGG 60.395 44.000 17.98 0.00 0.00 4.12
554 555 5.420739 GGGTGCACTTCTTAATAAATTGGGA 59.579 40.000 17.98 0.00 0.00 4.37
555 556 6.071051 GGGTGCACTTCTTAATAAATTGGGAA 60.071 38.462 17.98 0.00 0.00 3.97
556 557 7.382898 GGTGCACTTCTTAATAAATTGGGAAA 58.617 34.615 17.98 0.00 0.00 3.13
557 558 7.875554 GGTGCACTTCTTAATAAATTGGGAAAA 59.124 33.333 17.98 0.00 0.00 2.29
558 559 8.925700 GTGCACTTCTTAATAAATTGGGAAAAG 58.074 33.333 10.32 0.00 0.00 2.27
559 560 8.093927 TGCACTTCTTAATAAATTGGGAAAAGG 58.906 33.333 0.00 0.00 0.00 3.11
560 561 8.311109 GCACTTCTTAATAAATTGGGAAAAGGA 58.689 33.333 0.00 0.00 0.00 3.36
580 581 2.969443 AAAAAGATCCGTCGTGCTTG 57.031 45.000 0.00 0.00 0.00 4.01
581 582 2.163818 AAAAGATCCGTCGTGCTTGA 57.836 45.000 0.00 0.00 0.00 3.02
582 583 2.163818 AAAGATCCGTCGTGCTTGAA 57.836 45.000 0.00 0.00 0.00 2.69
583 584 2.163818 AAGATCCGTCGTGCTTGAAA 57.836 45.000 0.00 0.00 0.00 2.69
584 585 2.163818 AGATCCGTCGTGCTTGAAAA 57.836 45.000 0.00 0.00 0.00 2.29
607 608 4.624015 GCATATTGCTGCATACCAATTGT 58.376 39.130 1.84 0.00 40.96 2.71
608 609 5.771469 GCATATTGCTGCATACCAATTGTA 58.229 37.500 1.84 0.00 40.96 2.41
609 610 5.630680 GCATATTGCTGCATACCAATTGTAC 59.369 40.000 1.84 0.00 40.96 2.90
610 611 6.515531 GCATATTGCTGCATACCAATTGTACT 60.516 38.462 1.84 0.00 40.96 2.73
611 612 7.308529 GCATATTGCTGCATACCAATTGTACTA 60.309 37.037 1.84 0.00 40.96 1.82
612 613 8.733458 CATATTGCTGCATACCAATTGTACTAT 58.267 33.333 1.84 0.00 33.93 2.12
613 614 9.958180 ATATTGCTGCATACCAATTGTACTATA 57.042 29.630 1.84 0.00 33.93 1.31
614 615 7.728847 TTGCTGCATACCAATTGTACTATAG 57.271 36.000 1.84 0.00 30.62 1.31
615 616 6.826668 TGCTGCATACCAATTGTACTATAGT 58.173 36.000 10.87 10.87 30.62 2.12
616 617 7.958088 TGCTGCATACCAATTGTACTATAGTA 58.042 34.615 8.59 8.59 30.62 1.82
617 618 8.593679 TGCTGCATACCAATTGTACTATAGTAT 58.406 33.333 15.53 0.00 32.54 2.12
650 651 8.040716 ACAACTAGTATTAAAATGTGACCAGC 57.959 34.615 0.00 0.00 0.00 4.85
651 652 7.663905 ACAACTAGTATTAAAATGTGACCAGCA 59.336 33.333 0.00 0.00 0.00 4.41
652 653 8.511321 CAACTAGTATTAAAATGTGACCAGCAA 58.489 33.333 0.00 0.00 0.00 3.91
653 654 8.040716 ACTAGTATTAAAATGTGACCAGCAAC 57.959 34.615 0.00 0.00 0.00 4.17
654 655 6.892658 AGTATTAAAATGTGACCAGCAACA 57.107 33.333 0.00 0.00 0.00 3.33
655 656 7.283625 AGTATTAAAATGTGACCAGCAACAA 57.716 32.000 0.00 0.00 0.00 2.83
656 657 7.145323 AGTATTAAAATGTGACCAGCAACAAC 58.855 34.615 0.00 0.00 0.00 3.32
657 658 2.888834 AAATGTGACCAGCAACAACC 57.111 45.000 0.00 0.00 0.00 3.77
658 659 1.774110 AATGTGACCAGCAACAACCA 58.226 45.000 0.00 0.00 0.00 3.67
659 660 1.774110 ATGTGACCAGCAACAACCAA 58.226 45.000 0.00 0.00 0.00 3.67
660 661 0.814457 TGTGACCAGCAACAACCAAC 59.186 50.000 0.00 0.00 0.00 3.77
687 688 6.722328 TCTCTACTCCTAATGTCTCAGTTGA 58.278 40.000 0.00 0.00 0.00 3.18
691 692 8.495260 TCTACTCCTAATGTCTCAGTTGATAGA 58.505 37.037 0.00 0.00 0.00 1.98
721 722 4.216708 TCGGGTTTTATTTTTGTCCCACT 58.783 39.130 0.00 0.00 35.08 4.00
788 791 1.660264 CCAGCCGCGAAAAACCAAC 60.660 57.895 8.23 0.00 0.00 3.77
801 808 2.028337 CCAACAAAAACCCCGCGG 59.972 61.111 21.04 21.04 0.00 6.46
1007 1055 3.160047 CTCTCCCGGGATGCAGCT 61.160 66.667 27.07 0.00 0.00 4.24
1123 1775 0.317854 CTCGGATACATCGCTGCGAA 60.318 55.000 29.48 13.42 39.99 4.70
1546 3112 1.202417 CCGACGGTGATGCTCAACTAT 60.202 52.381 5.48 0.00 30.24 2.12
1564 3130 0.681733 ATGGCCGTAGCTTGATCGAT 59.318 50.000 0.00 0.00 39.73 3.59
1636 3214 2.699954 TCTTCTTCTTCATTCACGGGC 58.300 47.619 0.00 0.00 0.00 6.13
1753 3342 1.008745 GTACGTTCGCAGAAATCGTCG 60.009 52.381 0.00 0.00 45.90 5.12
1791 3380 3.559655 GCAGTAATTACATCGACATGGCA 59.440 43.478 17.65 0.00 33.82 4.92
2051 3763 4.518621 TCCAGGATATTTGGATAGGGGA 57.481 45.455 5.95 0.00 39.74 4.81
2115 3827 7.224557 GCAAATGATTTTTGGACTGTAGTTTGT 59.775 33.333 0.00 0.00 0.00 2.83
2441 5161 9.388506 CTGAGATCTTCATTACATTACAACCTT 57.611 33.333 0.00 0.00 34.68 3.50
2706 5426 6.809630 TCACCATTGTTTCATGTTCGATTA 57.190 33.333 0.00 0.00 0.00 1.75
3004 5732 5.461032 AACAAGAGTAGAAGAGGACTGTG 57.539 43.478 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.191162 GCATCACAGAACATTACTGGCAA 59.809 43.478 0.00 0.00 39.38 4.52
1 2 2.749076 GCATCACAGAACATTACTGGCA 59.251 45.455 0.00 0.00 39.38 4.92
7 8 4.573607 GCATCAGAGCATCACAGAACATTA 59.426 41.667 0.00 0.00 37.82 1.90
8 9 3.377485 GCATCAGAGCATCACAGAACATT 59.623 43.478 0.00 0.00 37.82 2.71
9 10 2.943690 GCATCAGAGCATCACAGAACAT 59.056 45.455 0.00 0.00 37.82 2.71
10 11 2.289819 TGCATCAGAGCATCACAGAACA 60.290 45.455 0.00 0.00 40.11 3.18
12 13 2.773993 TGCATCAGAGCATCACAGAA 57.226 45.000 0.00 0.00 40.11 3.02
20 21 0.401356 TCCCAAAGTGCATCAGAGCA 59.599 50.000 0.00 0.00 43.35 4.26
22 23 3.119245 CCAATTCCCAAAGTGCATCAGAG 60.119 47.826 0.00 0.00 0.00 3.35
23 24 2.827322 CCAATTCCCAAAGTGCATCAGA 59.173 45.455 0.00 0.00 0.00 3.27
24 25 2.564062 ACCAATTCCCAAAGTGCATCAG 59.436 45.455 0.00 0.00 0.00 2.90
25 26 2.607499 ACCAATTCCCAAAGTGCATCA 58.393 42.857 0.00 0.00 0.00 3.07
26 27 3.683365 AACCAATTCCCAAAGTGCATC 57.317 42.857 0.00 0.00 0.00 3.91
27 28 5.025453 AGATAACCAATTCCCAAAGTGCAT 58.975 37.500 0.00 0.00 0.00 3.96
28 29 4.415596 AGATAACCAATTCCCAAAGTGCA 58.584 39.130 0.00 0.00 0.00 4.57
30 31 6.209391 AGACAAGATAACCAATTCCCAAAGTG 59.791 38.462 0.00 0.00 0.00 3.16
31 32 6.314917 AGACAAGATAACCAATTCCCAAAGT 58.685 36.000 0.00 0.00 0.00 2.66
32 33 6.840780 AGACAAGATAACCAATTCCCAAAG 57.159 37.500 0.00 0.00 0.00 2.77
34 35 6.310941 TGAAGACAAGATAACCAATTCCCAA 58.689 36.000 0.00 0.00 0.00 4.12
35 36 5.886609 TGAAGACAAGATAACCAATTCCCA 58.113 37.500 0.00 0.00 0.00 4.37
36 37 5.946377 ACTGAAGACAAGATAACCAATTCCC 59.054 40.000 0.00 0.00 0.00 3.97
37 38 6.623767 GCACTGAAGACAAGATAACCAATTCC 60.624 42.308 0.00 0.00 0.00 3.01
38 39 6.072508 TGCACTGAAGACAAGATAACCAATTC 60.073 38.462 0.00 0.00 0.00 2.17
39 40 5.769662 TGCACTGAAGACAAGATAACCAATT 59.230 36.000 0.00 0.00 0.00 2.32
40 41 5.316167 TGCACTGAAGACAAGATAACCAAT 58.684 37.500 0.00 0.00 0.00 3.16
41 42 4.713553 TGCACTGAAGACAAGATAACCAA 58.286 39.130 0.00 0.00 0.00 3.67
42 43 4.350368 TGCACTGAAGACAAGATAACCA 57.650 40.909 0.00 0.00 0.00 3.67
43 44 6.371548 TGTTATGCACTGAAGACAAGATAACC 59.628 38.462 0.00 0.00 0.00 2.85
44 45 7.364522 TGTTATGCACTGAAGACAAGATAAC 57.635 36.000 0.00 0.00 0.00 1.89
45 46 8.565896 AATGTTATGCACTGAAGACAAGATAA 57.434 30.769 0.00 0.00 0.00 1.75
46 47 8.453320 CAAATGTTATGCACTGAAGACAAGATA 58.547 33.333 0.00 0.00 0.00 1.98
47 48 7.040201 ACAAATGTTATGCACTGAAGACAAGAT 60.040 33.333 0.00 0.00 0.00 2.40
48 49 6.262944 ACAAATGTTATGCACTGAAGACAAGA 59.737 34.615 0.00 0.00 0.00 3.02
49 50 6.441274 ACAAATGTTATGCACTGAAGACAAG 58.559 36.000 0.00 0.00 0.00 3.16
50 51 6.389830 ACAAATGTTATGCACTGAAGACAA 57.610 33.333 0.00 0.00 0.00 3.18
51 52 6.389830 AACAAATGTTATGCACTGAAGACA 57.610 33.333 0.00 0.00 36.32 3.41
52 53 8.970691 ATAAACAAATGTTATGCACTGAAGAC 57.029 30.769 0.00 0.00 37.25 3.01
57 58 9.904647 GCATTAATAAACAAATGTTATGCACTG 57.095 29.630 18.86 8.02 41.24 3.66
58 59 9.650539 TGCATTAATAAACAAATGTTATGCACT 57.349 25.926 21.05 1.74 43.86 4.40
71 72 9.412460 AGGATTCTTCTCATGCATTAATAAACA 57.588 29.630 0.00 0.00 0.00 2.83
74 75 9.412460 ACAAGGATTCTTCTCATGCATTAATAA 57.588 29.630 0.00 0.00 0.00 1.40
75 76 8.985315 ACAAGGATTCTTCTCATGCATTAATA 57.015 30.769 0.00 0.00 0.00 0.98
76 77 7.893124 ACAAGGATTCTTCTCATGCATTAAT 57.107 32.000 0.00 0.00 0.00 1.40
77 78 7.707624 AACAAGGATTCTTCTCATGCATTAA 57.292 32.000 0.00 0.00 0.00 1.40
78 79 8.049117 AGTAACAAGGATTCTTCTCATGCATTA 58.951 33.333 0.00 0.00 0.00 1.90
79 80 6.888632 AGTAACAAGGATTCTTCTCATGCATT 59.111 34.615 0.00 0.00 0.00 3.56
80 81 6.421485 AGTAACAAGGATTCTTCTCATGCAT 58.579 36.000 0.00 0.00 0.00 3.96
81 82 5.809001 AGTAACAAGGATTCTTCTCATGCA 58.191 37.500 0.00 0.00 0.00 3.96
82 83 6.258947 GGTAGTAACAAGGATTCTTCTCATGC 59.741 42.308 0.00 0.00 0.00 4.06
83 84 7.560368 AGGTAGTAACAAGGATTCTTCTCATG 58.440 38.462 0.00 0.00 0.00 3.07
84 85 7.741554 AGGTAGTAACAAGGATTCTTCTCAT 57.258 36.000 0.00 0.00 0.00 2.90
85 86 7.234782 TCAAGGTAGTAACAAGGATTCTTCTCA 59.765 37.037 0.00 0.00 0.00 3.27
86 87 7.612677 TCAAGGTAGTAACAAGGATTCTTCTC 58.387 38.462 0.00 0.00 0.00 2.87
87 88 7.554959 TCAAGGTAGTAACAAGGATTCTTCT 57.445 36.000 0.00 0.00 0.00 2.85
88 89 7.119407 GGTTCAAGGTAGTAACAAGGATTCTTC 59.881 40.741 0.00 0.00 0.00 2.87
89 90 6.940867 GGTTCAAGGTAGTAACAAGGATTCTT 59.059 38.462 0.00 0.00 0.00 2.52
90 91 6.272558 AGGTTCAAGGTAGTAACAAGGATTCT 59.727 38.462 0.00 0.00 0.00 2.40
91 92 6.371825 CAGGTTCAAGGTAGTAACAAGGATTC 59.628 42.308 0.00 0.00 0.00 2.52
92 93 6.183361 ACAGGTTCAAGGTAGTAACAAGGATT 60.183 38.462 0.00 0.00 0.00 3.01
93 94 5.309806 ACAGGTTCAAGGTAGTAACAAGGAT 59.690 40.000 0.00 0.00 0.00 3.24
94 95 4.657039 ACAGGTTCAAGGTAGTAACAAGGA 59.343 41.667 0.00 0.00 0.00 3.36
95 96 4.969484 ACAGGTTCAAGGTAGTAACAAGG 58.031 43.478 0.00 0.00 0.00 3.61
96 97 6.937436 AAACAGGTTCAAGGTAGTAACAAG 57.063 37.500 0.00 0.00 0.00 3.16
97 98 8.983702 ATAAAACAGGTTCAAGGTAGTAACAA 57.016 30.769 0.00 0.00 0.00 2.83
101 102 9.895138 GGATTATAAAACAGGTTCAAGGTAGTA 57.105 33.333 0.00 0.00 0.00 1.82
102 103 8.387813 TGGATTATAAAACAGGTTCAAGGTAGT 58.612 33.333 0.00 0.00 0.00 2.73
103 104 8.801882 TGGATTATAAAACAGGTTCAAGGTAG 57.198 34.615 0.00 0.00 0.00 3.18
105 106 9.936329 ATATGGATTATAAAACAGGTTCAAGGT 57.064 29.630 0.00 0.00 0.00 3.50
120 121 9.313118 CGCTAGTGCATAACAATATGGATTATA 57.687 33.333 0.00 0.00 41.20 0.98
121 122 7.201644 GCGCTAGTGCATAACAATATGGATTAT 60.202 37.037 23.15 0.00 41.20 1.28
122 123 6.092122 GCGCTAGTGCATAACAATATGGATTA 59.908 38.462 23.15 0.00 41.20 1.75
123 124 5.106555 GCGCTAGTGCATAACAATATGGATT 60.107 40.000 23.15 0.00 41.20 3.01
124 125 4.393062 GCGCTAGTGCATAACAATATGGAT 59.607 41.667 23.15 0.00 41.20 3.41
125 126 3.745975 GCGCTAGTGCATAACAATATGGA 59.254 43.478 23.15 0.00 39.49 3.41
126 127 3.423515 CGCGCTAGTGCATAACAATATGG 60.424 47.826 26.75 3.24 39.49 2.74
127 128 3.184379 ACGCGCTAGTGCATAACAATATG 59.816 43.478 26.75 9.62 41.59 1.78
128 129 3.184379 CACGCGCTAGTGCATAACAATAT 59.816 43.478 26.75 0.00 39.64 1.28
129 130 2.538037 CACGCGCTAGTGCATAACAATA 59.462 45.455 26.75 0.00 39.64 1.90
130 131 1.327460 CACGCGCTAGTGCATAACAAT 59.673 47.619 26.75 1.33 39.64 2.71
131 132 0.718904 CACGCGCTAGTGCATAACAA 59.281 50.000 26.75 0.00 39.64 2.83
132 133 0.389296 ACACGCGCTAGTGCATAACA 60.389 50.000 26.75 0.00 45.45 2.41
133 134 0.025001 CACACGCGCTAGTGCATAAC 59.975 55.000 26.75 0.00 45.45 1.89
134 135 2.368856 CACACGCGCTAGTGCATAA 58.631 52.632 26.75 0.00 45.45 1.90
135 136 4.086860 CACACGCGCTAGTGCATA 57.913 55.556 26.75 0.00 45.45 3.14
146 147 0.787787 TCTATTTCACACGCACACGC 59.212 50.000 0.00 0.00 45.53 5.34
148 149 3.000041 TCCATCTATTTCACACGCACAC 59.000 45.455 0.00 0.00 0.00 3.82
149 150 3.326836 TCCATCTATTTCACACGCACA 57.673 42.857 0.00 0.00 0.00 4.57
150 151 4.882671 AATCCATCTATTTCACACGCAC 57.117 40.909 0.00 0.00 0.00 5.34
151 152 5.469760 CCATAATCCATCTATTTCACACGCA 59.530 40.000 0.00 0.00 0.00 5.24
152 153 5.470098 ACCATAATCCATCTATTTCACACGC 59.530 40.000 0.00 0.00 0.00 5.34
153 154 6.147821 GGACCATAATCCATCTATTTCACACG 59.852 42.308 0.00 0.00 38.77 4.49
154 155 6.431234 GGGACCATAATCCATCTATTTCACAC 59.569 42.308 0.00 0.00 40.96 3.82
155 156 6.542821 GGGACCATAATCCATCTATTTCACA 58.457 40.000 0.00 0.00 40.96 3.58
156 157 5.643777 CGGGACCATAATCCATCTATTTCAC 59.356 44.000 0.00 0.00 40.96 3.18
157 158 5.309543 ACGGGACCATAATCCATCTATTTCA 59.690 40.000 0.00 0.00 40.96 2.69
158 159 5.805728 ACGGGACCATAATCCATCTATTTC 58.194 41.667 0.00 0.00 40.96 2.17
159 160 5.843019 ACGGGACCATAATCCATCTATTT 57.157 39.130 0.00 0.00 40.96 1.40
160 161 6.295719 GTACGGGACCATAATCCATCTATT 57.704 41.667 0.00 0.00 40.96 1.73
161 162 5.934402 GTACGGGACCATAATCCATCTAT 57.066 43.478 0.00 0.00 40.96 1.98
175 176 2.701951 TCCATCTTATTGGGTACGGGAC 59.298 50.000 0.00 0.00 37.37 4.46
176 177 3.049108 TCCATCTTATTGGGTACGGGA 57.951 47.619 0.00 0.00 37.37 5.14
177 178 5.045869 ACATATCCATCTTATTGGGTACGGG 60.046 44.000 0.00 0.00 35.20 5.28
178 179 5.874810 CACATATCCATCTTATTGGGTACGG 59.125 44.000 0.00 0.00 35.20 4.02
179 180 6.368791 CACACATATCCATCTTATTGGGTACG 59.631 42.308 0.00 0.00 35.20 3.67
180 181 7.173218 CACACACATATCCATCTTATTGGGTAC 59.827 40.741 0.00 0.00 35.20 3.34
181 182 7.147391 ACACACACATATCCATCTTATTGGGTA 60.147 37.037 0.00 0.00 36.79 3.69
182 183 6.064060 CACACACATATCCATCTTATTGGGT 58.936 40.000 0.00 0.00 37.37 4.51
183 184 6.016860 CACACACACATATCCATCTTATTGGG 60.017 42.308 0.00 0.00 37.37 4.12
184 185 6.543465 ACACACACACATATCCATCTTATTGG 59.457 38.462 0.00 0.00 38.18 3.16
185 186 7.558161 ACACACACACATATCCATCTTATTG 57.442 36.000 0.00 0.00 0.00 1.90
186 187 9.330063 CTAACACACACACATATCCATCTTATT 57.670 33.333 0.00 0.00 0.00 1.40
187 188 8.704668 TCTAACACACACACATATCCATCTTAT 58.295 33.333 0.00 0.00 0.00 1.73
188 189 8.073467 TCTAACACACACACATATCCATCTTA 57.927 34.615 0.00 0.00 0.00 2.10
189 190 6.946340 TCTAACACACACACATATCCATCTT 58.054 36.000 0.00 0.00 0.00 2.40
190 191 6.381133 TCTCTAACACACACACATATCCATCT 59.619 38.462 0.00 0.00 0.00 2.90
191 192 6.573434 TCTCTAACACACACACATATCCATC 58.427 40.000 0.00 0.00 0.00 3.51
192 193 6.381133 TCTCTCTAACACACACACATATCCAT 59.619 38.462 0.00 0.00 0.00 3.41
193 194 5.714806 TCTCTCTAACACACACACATATCCA 59.285 40.000 0.00 0.00 0.00 3.41
194 195 6.095580 TCTCTCTCTAACACACACACATATCC 59.904 42.308 0.00 0.00 0.00 2.59
195 196 7.066404 TCTCTCTCTCTAACACACACACATATC 59.934 40.741 0.00 0.00 0.00 1.63
196 197 6.887002 TCTCTCTCTCTAACACACACACATAT 59.113 38.462 0.00 0.00 0.00 1.78
197 198 6.238648 TCTCTCTCTCTAACACACACACATA 58.761 40.000 0.00 0.00 0.00 2.29
198 199 5.073428 TCTCTCTCTCTAACACACACACAT 58.927 41.667 0.00 0.00 0.00 3.21
199 200 4.461198 TCTCTCTCTCTAACACACACACA 58.539 43.478 0.00 0.00 0.00 3.72
200 201 4.757657 TCTCTCTCTCTCTAACACACACAC 59.242 45.833 0.00 0.00 0.00 3.82
201 202 4.974399 TCTCTCTCTCTCTAACACACACA 58.026 43.478 0.00 0.00 0.00 3.72
202 203 4.394920 CCTCTCTCTCTCTCTAACACACAC 59.605 50.000 0.00 0.00 0.00 3.82
203 204 4.566697 CCCTCTCTCTCTCTCTAACACACA 60.567 50.000 0.00 0.00 0.00 3.72
204 205 3.945285 CCCTCTCTCTCTCTCTAACACAC 59.055 52.174 0.00 0.00 0.00 3.82
205 206 3.847184 TCCCTCTCTCTCTCTCTAACACA 59.153 47.826 0.00 0.00 0.00 3.72
206 207 4.163458 TCTCCCTCTCTCTCTCTCTAACAC 59.837 50.000 0.00 0.00 0.00 3.32
207 208 4.367166 TCTCCCTCTCTCTCTCTCTAACA 58.633 47.826 0.00 0.00 0.00 2.41
208 209 4.202367 CCTCTCCCTCTCTCTCTCTCTAAC 60.202 54.167 0.00 0.00 0.00 2.34
209 210 3.973973 CCTCTCCCTCTCTCTCTCTCTAA 59.026 52.174 0.00 0.00 0.00 2.10
210 211 3.587498 CCTCTCCCTCTCTCTCTCTCTA 58.413 54.545 0.00 0.00 0.00 2.43
211 212 2.412591 CCTCTCCCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
212 213 1.421646 CCCTCTCCCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
213 214 1.522900 CCCTCTCCCTCTCTCTCTCT 58.477 60.000 0.00 0.00 0.00 3.10
214 215 0.478507 CCCCTCTCCCTCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
215 216 0.998945 CCCCCTCTCCCTCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
216 217 0.996762 TCCCCCTCTCCCTCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
217 218 0.998945 CTCCCCCTCTCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
218 219 0.996762 TCTCCCCCTCTCCCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
219 220 0.998945 CTCTCCCCCTCTCCCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
220 221 0.996762 TCTCTCCCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
221 222 0.998945 CTCTCTCCCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
222 223 0.996762 TCTCTCTCCCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
223 224 0.998945 CTCTCTCTCCCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
224 225 1.293683 ACTCTCTCTCCCCCTCTCCC 61.294 65.000 0.00 0.00 0.00 4.30
225 226 0.106217 CACTCTCTCTCCCCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
226 227 0.923358 TCACTCTCTCTCCCCCTCTC 59.077 60.000 0.00 0.00 0.00 3.20
227 228 0.926293 CTCACTCTCTCTCCCCCTCT 59.074 60.000 0.00 0.00 0.00 3.69
228 229 0.106217 CCTCACTCTCTCTCCCCCTC 60.106 65.000 0.00 0.00 0.00 4.30
229 230 0.553862 TCCTCACTCTCTCTCCCCCT 60.554 60.000 0.00 0.00 0.00 4.79
230 231 0.106217 CTCCTCACTCTCTCTCCCCC 60.106 65.000 0.00 0.00 0.00 5.40
231 232 0.106217 CCTCCTCACTCTCTCTCCCC 60.106 65.000 0.00 0.00 0.00 4.81
232 233 0.923358 TCCTCCTCACTCTCTCTCCC 59.077 60.000 0.00 0.00 0.00 4.30
233 234 1.133792 CCTCCTCCTCACTCTCTCTCC 60.134 61.905 0.00 0.00 0.00 3.71
234 235 1.133792 CCCTCCTCCTCACTCTCTCTC 60.134 61.905 0.00 0.00 0.00 3.20
235 236 0.926293 CCCTCCTCCTCACTCTCTCT 59.074 60.000 0.00 0.00 0.00 3.10
236 237 0.923358 TCCCTCCTCCTCACTCTCTC 59.077 60.000 0.00 0.00 0.00 3.20
237 238 0.926293 CTCCCTCCTCCTCACTCTCT 59.074 60.000 0.00 0.00 0.00 3.10
238 239 0.106217 CCTCCCTCCTCCTCACTCTC 60.106 65.000 0.00 0.00 0.00 3.20
239 240 1.589399 CCCTCCCTCCTCCTCACTCT 61.589 65.000 0.00 0.00 0.00 3.24
240 241 1.075600 CCCTCCCTCCTCCTCACTC 60.076 68.421 0.00 0.00 0.00 3.51
241 242 1.547755 TCCCTCCCTCCTCCTCACT 60.548 63.158 0.00 0.00 0.00 3.41
242 243 1.075600 CTCCCTCCCTCCTCCTCAC 60.076 68.421 0.00 0.00 0.00 3.51
243 244 1.230650 TCTCCCTCCCTCCTCCTCA 60.231 63.158 0.00 0.00 0.00 3.86
244 245 0.996762 TCTCTCCCTCCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
245 246 0.998945 CTCTCTCCCTCCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
246 247 1.293683 ACTCTCTCCCTCCCTCCTCC 61.294 65.000 0.00 0.00 0.00 4.30
247 248 0.106217 CACTCTCTCCCTCCCTCCTC 60.106 65.000 0.00 0.00 0.00 3.71
248 249 0.853586 ACACTCTCTCCCTCCCTCCT 60.854 60.000 0.00 0.00 0.00 3.69
249 250 0.686112 CACACTCTCTCCCTCCCTCC 60.686 65.000 0.00 0.00 0.00 4.30
250 251 0.040499 ACACACTCTCTCCCTCCCTC 59.960 60.000 0.00 0.00 0.00 4.30
251 252 0.252012 CACACACTCTCTCCCTCCCT 60.252 60.000 0.00 0.00 0.00 4.20
252 253 0.543174 ACACACACTCTCTCCCTCCC 60.543 60.000 0.00 0.00 0.00 4.30
253 254 0.605589 CACACACACTCTCTCCCTCC 59.394 60.000 0.00 0.00 0.00 4.30
254 255 1.543802 CTCACACACACTCTCTCCCTC 59.456 57.143 0.00 0.00 0.00 4.30
255 256 1.145945 TCTCACACACACTCTCTCCCT 59.854 52.381 0.00 0.00 0.00 4.20
256 257 1.621992 TCTCACACACACTCTCTCCC 58.378 55.000 0.00 0.00 0.00 4.30
257 258 3.951775 ATTCTCACACACACTCTCTCC 57.048 47.619 0.00 0.00 0.00 3.71
258 259 5.292765 TCAAATTCTCACACACACTCTCTC 58.707 41.667 0.00 0.00 0.00 3.20
259 260 5.282055 TCAAATTCTCACACACACTCTCT 57.718 39.130 0.00 0.00 0.00 3.10
260 261 5.106791 CCATCAAATTCTCACACACACTCTC 60.107 44.000 0.00 0.00 0.00 3.20
261 262 4.758674 CCATCAAATTCTCACACACACTCT 59.241 41.667 0.00 0.00 0.00 3.24
262 263 4.516698 ACCATCAAATTCTCACACACACTC 59.483 41.667 0.00 0.00 0.00 3.51
263 264 4.464008 ACCATCAAATTCTCACACACACT 58.536 39.130 0.00 0.00 0.00 3.55
264 265 4.836125 ACCATCAAATTCTCACACACAC 57.164 40.909 0.00 0.00 0.00 3.82
265 266 6.951062 TTTACCATCAAATTCTCACACACA 57.049 33.333 0.00 0.00 0.00 3.72
266 267 7.382218 CCTTTTTACCATCAAATTCTCACACAC 59.618 37.037 0.00 0.00 0.00 3.82
267 268 7.069331 ACCTTTTTACCATCAAATTCTCACACA 59.931 33.333 0.00 0.00 0.00 3.72
268 269 7.433680 ACCTTTTTACCATCAAATTCTCACAC 58.566 34.615 0.00 0.00 0.00 3.82
269 270 7.521423 CGACCTTTTTACCATCAAATTCTCACA 60.521 37.037 0.00 0.00 0.00 3.58
270 271 6.801862 CGACCTTTTTACCATCAAATTCTCAC 59.198 38.462 0.00 0.00 0.00 3.51
271 272 6.488683 ACGACCTTTTTACCATCAAATTCTCA 59.511 34.615 0.00 0.00 0.00 3.27
272 273 6.909909 ACGACCTTTTTACCATCAAATTCTC 58.090 36.000 0.00 0.00 0.00 2.87
273 274 6.488683 TGACGACCTTTTTACCATCAAATTCT 59.511 34.615 0.00 0.00 0.00 2.40
274 275 6.674066 TGACGACCTTTTTACCATCAAATTC 58.326 36.000 0.00 0.00 0.00 2.17
275 276 6.642707 TGACGACCTTTTTACCATCAAATT 57.357 33.333 0.00 0.00 0.00 1.82
276 277 6.642707 TTGACGACCTTTTTACCATCAAAT 57.357 33.333 0.00 0.00 0.00 2.32
277 278 6.039941 ACATTGACGACCTTTTTACCATCAAA 59.960 34.615 0.00 0.00 0.00 2.69
278 279 5.533154 ACATTGACGACCTTTTTACCATCAA 59.467 36.000 0.00 0.00 0.00 2.57
279 280 5.067273 ACATTGACGACCTTTTTACCATCA 58.933 37.500 0.00 0.00 0.00 3.07
280 281 5.180492 TGACATTGACGACCTTTTTACCATC 59.820 40.000 0.00 0.00 0.00 3.51
281 282 5.048991 GTGACATTGACGACCTTTTTACCAT 60.049 40.000 0.00 0.00 0.00 3.55
282 283 4.273969 GTGACATTGACGACCTTTTTACCA 59.726 41.667 0.00 0.00 0.00 3.25
283 284 4.514066 AGTGACATTGACGACCTTTTTACC 59.486 41.667 0.00 0.00 0.00 2.85
284 285 5.668558 AGTGACATTGACGACCTTTTTAC 57.331 39.130 0.00 0.00 0.00 2.01
285 286 5.818336 TCAAGTGACATTGACGACCTTTTTA 59.182 36.000 0.00 0.00 34.31 1.52
286 287 4.638421 TCAAGTGACATTGACGACCTTTTT 59.362 37.500 0.00 0.00 34.31 1.94
287 288 4.196193 TCAAGTGACATTGACGACCTTTT 58.804 39.130 0.00 0.00 34.31 2.27
288 289 3.804036 TCAAGTGACATTGACGACCTTT 58.196 40.909 0.00 0.00 34.31 3.11
289 290 3.469008 TCAAGTGACATTGACGACCTT 57.531 42.857 0.00 0.00 34.31 3.50
290 291 3.244215 ACATCAAGTGACATTGACGACCT 60.244 43.478 0.00 0.00 41.76 3.85
291 292 3.067106 ACATCAAGTGACATTGACGACC 58.933 45.455 0.00 0.00 41.76 4.79
349 350 8.736244 GGCCACATTAACTTTAAGAGTTCAATA 58.264 33.333 0.00 0.00 45.40 1.90
350 351 7.309805 GGGCCACATTAACTTTAAGAGTTCAAT 60.310 37.037 4.39 4.32 45.40 2.57
351 352 6.015772 GGGCCACATTAACTTTAAGAGTTCAA 60.016 38.462 4.39 2.81 45.40 2.69
352 353 5.475564 GGGCCACATTAACTTTAAGAGTTCA 59.524 40.000 4.39 0.00 45.40 3.18
353 354 5.710567 AGGGCCACATTAACTTTAAGAGTTC 59.289 40.000 6.18 0.00 45.40 3.01
355 356 5.010282 CAGGGCCACATTAACTTTAAGAGT 58.990 41.667 6.18 0.00 41.47 3.24
356 357 5.010282 ACAGGGCCACATTAACTTTAAGAG 58.990 41.667 6.18 0.00 0.00 2.85
357 358 4.993028 ACAGGGCCACATTAACTTTAAGA 58.007 39.130 6.18 0.00 0.00 2.10
358 359 5.469479 CAACAGGGCCACATTAACTTTAAG 58.531 41.667 6.18 0.00 0.00 1.85
359 360 4.262249 GCAACAGGGCCACATTAACTTTAA 60.262 41.667 6.18 0.00 0.00 1.52
360 361 3.257127 GCAACAGGGCCACATTAACTTTA 59.743 43.478 6.18 0.00 0.00 1.85
361 362 2.037121 GCAACAGGGCCACATTAACTTT 59.963 45.455 6.18 0.00 0.00 2.66
362 363 1.618343 GCAACAGGGCCACATTAACTT 59.382 47.619 6.18 0.00 0.00 2.66
363 364 1.256812 GCAACAGGGCCACATTAACT 58.743 50.000 6.18 0.00 0.00 2.24
364 365 0.965439 TGCAACAGGGCCACATTAAC 59.035 50.000 6.18 0.00 0.00 2.01
365 366 1.342819 GTTGCAACAGGGCCACATTAA 59.657 47.619 24.52 0.00 30.39 1.40
366 367 0.965439 GTTGCAACAGGGCCACATTA 59.035 50.000 24.52 0.00 30.39 1.90
367 368 1.747774 GTTGCAACAGGGCCACATT 59.252 52.632 24.52 0.00 30.39 2.71
368 369 2.563798 CGTTGCAACAGGGCCACAT 61.564 57.895 28.01 0.00 30.39 3.21
369 370 3.215568 CGTTGCAACAGGGCCACA 61.216 61.111 28.01 0.00 30.39 4.17
370 371 4.645921 GCGTTGCAACAGGGCCAC 62.646 66.667 28.01 0.24 0.00 5.01
372 373 4.645921 GTGCGTTGCAACAGGGCC 62.646 66.667 28.01 13.56 41.47 5.80
373 374 4.980903 CGTGCGTTGCAACAGGGC 62.981 66.667 28.01 22.50 41.47 5.19
374 375 4.326766 CCGTGCGTTGCAACAGGG 62.327 66.667 28.01 19.75 41.47 4.45
375 376 4.326766 CCCGTGCGTTGCAACAGG 62.327 66.667 28.01 22.31 41.47 4.00
376 377 3.582120 ACCCGTGCGTTGCAACAG 61.582 61.111 28.01 20.60 41.47 3.16
377 378 3.882013 CACCCGTGCGTTGCAACA 61.882 61.111 28.01 8.05 41.47 3.33
378 379 3.404141 AACACCCGTGCGTTGCAAC 62.404 57.895 19.89 19.89 41.47 4.17
379 380 3.114647 GAACACCCGTGCGTTGCAA 62.115 57.895 0.00 0.00 41.47 4.08
380 381 3.578272 GAACACCCGTGCGTTGCA 61.578 61.111 0.00 0.00 35.60 4.08
381 382 2.711185 GAAGAACACCCGTGCGTTGC 62.711 60.000 0.00 0.00 0.00 4.17
382 383 1.157870 AGAAGAACACCCGTGCGTTG 61.158 55.000 0.00 0.00 0.00 4.10
383 384 0.390124 TAGAAGAACACCCGTGCGTT 59.610 50.000 0.00 0.00 0.00 4.84
384 385 0.038526 CTAGAAGAACACCCGTGCGT 60.039 55.000 0.00 0.00 0.00 5.24
385 386 0.038526 ACTAGAAGAACACCCGTGCG 60.039 55.000 0.00 0.00 0.00 5.34
386 387 2.165319 AACTAGAAGAACACCCGTGC 57.835 50.000 0.00 0.00 0.00 5.34
387 388 6.205101 AGTATAACTAGAAGAACACCCGTG 57.795 41.667 0.00 0.00 0.00 4.94
399 400 7.202289 TCCCATTGGAGAGCTAGTATAACTAGA 60.202 40.741 16.38 0.00 42.29 2.43
400 401 6.948886 TCCCATTGGAGAGCTAGTATAACTAG 59.051 42.308 3.62 9.30 42.44 2.57
401 402 6.860034 TCCCATTGGAGAGCTAGTATAACTA 58.140 40.000 3.62 0.00 35.03 2.24
402 403 5.716979 TCCCATTGGAGAGCTAGTATAACT 58.283 41.667 3.62 0.00 35.03 2.24
415 416 4.503643 AACAAAATGTTGCTCCCATTGGAG 60.504 41.667 8.52 8.52 45.95 3.86
416 417 2.971330 ACAAAATGTTGCTCCCATTGGA 59.029 40.909 3.62 0.00 38.39 3.53
417 418 3.405823 ACAAAATGTTGCTCCCATTGG 57.594 42.857 0.00 0.00 38.39 3.16
418 419 4.575645 ACAAACAAAATGTTGCTCCCATTG 59.424 37.500 0.00 0.00 40.14 2.82
419 420 4.779696 ACAAACAAAATGTTGCTCCCATT 58.220 34.783 0.00 0.00 40.14 3.16
420 421 4.420522 ACAAACAAAATGTTGCTCCCAT 57.579 36.364 0.00 0.00 40.14 4.00
421 422 3.902881 ACAAACAAAATGTTGCTCCCA 57.097 38.095 0.00 0.00 40.14 4.37
422 423 5.334028 GCATTACAAACAAAATGTTGCTCCC 60.334 40.000 0.00 0.00 40.14 4.30
423 424 5.612276 CGCATTACAAACAAAATGTTGCTCC 60.612 40.000 0.00 0.00 40.14 4.70
424 425 5.174761 TCGCATTACAAACAAAATGTTGCTC 59.825 36.000 0.00 0.00 40.14 4.26
425 426 5.046529 TCGCATTACAAACAAAATGTTGCT 58.953 33.333 0.00 0.00 40.14 3.91
426 427 5.321983 TCGCATTACAAACAAAATGTTGC 57.678 34.783 0.00 0.00 40.14 4.17
433 434 9.358872 TGCATTAATAATCGCATTACAAACAAA 57.641 25.926 6.18 0.00 0.00 2.83
434 435 8.917415 TGCATTAATAATCGCATTACAAACAA 57.083 26.923 6.18 0.00 0.00 2.83
435 436 9.179552 GATGCATTAATAATCGCATTACAAACA 57.820 29.630 17.40 0.00 44.77 2.83
436 437 8.638565 GGATGCATTAATAATCGCATTACAAAC 58.361 33.333 17.40 8.70 44.77 2.93
437 438 8.575589 AGGATGCATTAATAATCGCATTACAAA 58.424 29.630 17.40 0.00 44.77 2.83
438 439 8.109705 AGGATGCATTAATAATCGCATTACAA 57.890 30.769 17.40 0.00 44.77 2.41
439 440 7.686438 AGGATGCATTAATAATCGCATTACA 57.314 32.000 17.40 0.00 44.77 2.41
442 443 8.192774 CCATAAGGATGCATTAATAATCGCATT 58.807 33.333 17.40 9.91 44.77 3.56
444 445 6.883756 TCCATAAGGATGCATTAATAATCGCA 59.116 34.615 0.00 10.73 39.61 5.10
445 446 7.320443 TCCATAAGGATGCATTAATAATCGC 57.680 36.000 0.00 0.00 39.61 4.58
459 460 5.554747 AGGTCATTCCATCATCCATAAGGAT 59.445 40.000 0.00 0.00 46.83 3.24
460 461 4.915809 AGGTCATTCCATCATCCATAAGGA 59.084 41.667 0.00 0.00 43.37 3.36
461 462 5.252586 AGGTCATTCCATCATCCATAAGG 57.747 43.478 0.00 0.00 39.02 2.69
462 463 7.255730 GGAAAAGGTCATTCCATCATCCATAAG 60.256 40.741 0.56 0.00 44.70 1.73
463 464 6.550854 GGAAAAGGTCATTCCATCATCCATAA 59.449 38.462 0.56 0.00 44.70 1.90
464 465 6.070656 GGAAAAGGTCATTCCATCATCCATA 58.929 40.000 0.56 0.00 44.70 2.74
465 466 4.897670 GGAAAAGGTCATTCCATCATCCAT 59.102 41.667 0.56 0.00 44.70 3.41
466 467 4.280819 GGAAAAGGTCATTCCATCATCCA 58.719 43.478 0.56 0.00 44.70 3.41
467 468 4.926140 GGAAAAGGTCATTCCATCATCC 57.074 45.455 0.56 0.00 44.70 3.51
474 475 2.627699 TGTGCAAGGAAAAGGTCATTCC 59.372 45.455 0.00 0.00 45.50 3.01
475 476 4.022068 TCATGTGCAAGGAAAAGGTCATTC 60.022 41.667 0.00 0.00 0.00 2.67
476 477 3.896888 TCATGTGCAAGGAAAAGGTCATT 59.103 39.130 0.00 0.00 0.00 2.57
477 478 3.499338 TCATGTGCAAGGAAAAGGTCAT 58.501 40.909 0.00 0.00 0.00 3.06
478 479 2.942804 TCATGTGCAAGGAAAAGGTCA 58.057 42.857 0.00 0.00 0.00 4.02
479 480 4.320608 TTTCATGTGCAAGGAAAAGGTC 57.679 40.909 6.30 0.00 0.00 3.85
480 481 4.961438 ATTTCATGTGCAAGGAAAAGGT 57.039 36.364 11.28 0.00 34.55 3.50
481 482 7.910441 AATTATTTCATGTGCAAGGAAAAGG 57.090 32.000 11.28 0.00 34.55 3.11
484 485 9.941325 ACATAAATTATTTCATGTGCAAGGAAA 57.059 25.926 10.07 10.07 35.27 3.13
485 486 9.941325 AACATAAATTATTTCATGTGCAAGGAA 57.059 25.926 10.90 0.00 32.15 3.36
486 487 9.941325 AAACATAAATTATTTCATGTGCAAGGA 57.059 25.926 10.90 0.00 32.15 3.36
502 503 9.193806 AGTATGCCTCATCTGAAAACATAAATT 57.806 29.630 0.00 0.00 0.00 1.82
503 504 8.627403 CAGTATGCCTCATCTGAAAACATAAAT 58.373 33.333 0.00 0.00 0.00 1.40
504 505 7.067372 CCAGTATGCCTCATCTGAAAACATAAA 59.933 37.037 0.00 0.00 31.97 1.40
505 506 6.543465 CCAGTATGCCTCATCTGAAAACATAA 59.457 38.462 0.00 0.00 31.97 1.90
506 507 6.057533 CCAGTATGCCTCATCTGAAAACATA 58.942 40.000 0.00 0.00 31.97 2.29
507 508 4.885907 CCAGTATGCCTCATCTGAAAACAT 59.114 41.667 0.00 0.00 31.97 2.71
508 509 4.264253 CCAGTATGCCTCATCTGAAAACA 58.736 43.478 0.00 0.00 31.97 2.83
509 510 3.629398 CCCAGTATGCCTCATCTGAAAAC 59.371 47.826 0.00 0.00 31.97 2.43
510 511 3.371917 CCCCAGTATGCCTCATCTGAAAA 60.372 47.826 0.00 0.00 31.97 2.29
511 512 2.173356 CCCCAGTATGCCTCATCTGAAA 59.827 50.000 0.00 0.00 31.97 2.69
512 513 1.770658 CCCCAGTATGCCTCATCTGAA 59.229 52.381 0.00 0.00 31.97 3.02
513 514 1.344393 ACCCCAGTATGCCTCATCTGA 60.344 52.381 0.00 0.00 31.97 3.27
514 515 1.135094 ACCCCAGTATGCCTCATCTG 58.865 55.000 0.00 0.00 31.97 2.90
515 516 1.135094 CACCCCAGTATGCCTCATCT 58.865 55.000 0.00 0.00 31.97 2.90
516 517 0.536006 GCACCCCAGTATGCCTCATC 60.536 60.000 0.00 0.00 35.73 2.92
517 518 1.281199 TGCACCCCAGTATGCCTCAT 61.281 55.000 0.00 0.00 41.33 2.90
518 519 1.922881 TGCACCCCAGTATGCCTCA 60.923 57.895 0.00 0.00 41.33 3.86
519 520 1.452108 GTGCACCCCAGTATGCCTC 60.452 63.158 5.22 0.00 41.33 4.70
520 521 1.500783 AAGTGCACCCCAGTATGCCT 61.501 55.000 14.63 0.00 41.33 4.75
521 522 1.000896 AAGTGCACCCCAGTATGCC 60.001 57.895 14.63 0.00 41.33 4.40
522 523 0.035056 AGAAGTGCACCCCAGTATGC 60.035 55.000 14.63 0.00 42.40 3.14
523 524 2.496899 AAGAAGTGCACCCCAGTATG 57.503 50.000 14.63 0.00 0.00 2.39
524 525 4.862641 ATTAAGAAGTGCACCCCAGTAT 57.137 40.909 14.63 0.00 0.00 2.12
525 526 5.765576 TTATTAAGAAGTGCACCCCAGTA 57.234 39.130 14.63 0.00 0.00 2.74
526 527 4.650972 TTATTAAGAAGTGCACCCCAGT 57.349 40.909 14.63 0.00 0.00 4.00
527 528 6.332630 CAATTTATTAAGAAGTGCACCCCAG 58.667 40.000 14.63 0.00 0.00 4.45
528 529 5.186797 CCAATTTATTAAGAAGTGCACCCCA 59.813 40.000 14.63 0.00 0.00 4.96
529 530 5.395214 CCCAATTTATTAAGAAGTGCACCCC 60.395 44.000 14.63 5.52 0.00 4.95
530 531 5.420739 TCCCAATTTATTAAGAAGTGCACCC 59.579 40.000 14.63 5.93 0.00 4.61
531 532 6.524101 TCCCAATTTATTAAGAAGTGCACC 57.476 37.500 14.63 0.00 0.00 5.01
532 533 8.825667 TTTTCCCAATTTATTAAGAAGTGCAC 57.174 30.769 9.40 9.40 0.00 4.57
533 534 8.093927 CCTTTTCCCAATTTATTAAGAAGTGCA 58.906 33.333 0.00 0.00 0.00 4.57
534 535 8.311109 TCCTTTTCCCAATTTATTAAGAAGTGC 58.689 33.333 0.00 0.00 0.00 4.40
561 562 2.489971 TCAAGCACGACGGATCTTTTT 58.510 42.857 0.00 0.00 0.00 1.94
562 563 2.163818 TCAAGCACGACGGATCTTTT 57.836 45.000 0.00 0.00 0.00 2.27
563 564 2.163818 TTCAAGCACGACGGATCTTT 57.836 45.000 0.00 0.00 0.00 2.52
564 565 2.163818 TTTCAAGCACGACGGATCTT 57.836 45.000 0.00 0.00 0.00 2.40
565 566 2.069273 CTTTTCAAGCACGACGGATCT 58.931 47.619 0.00 0.00 0.00 2.75
566 567 2.510615 CTTTTCAAGCACGACGGATC 57.489 50.000 0.00 0.00 0.00 3.36
590 591 7.279615 ACTATAGTACAATTGGTATGCAGCAA 58.720 34.615 10.83 0.00 45.60 3.91
591 592 6.826668 ACTATAGTACAATTGGTATGCAGCA 58.173 36.000 10.83 0.00 33.76 4.41
624 625 9.158233 GCTGGTCACATTTTAATACTAGTTGTA 57.842 33.333 0.00 0.00 35.37 2.41
625 626 7.663905 TGCTGGTCACATTTTAATACTAGTTGT 59.336 33.333 0.00 0.00 0.00 3.32
626 627 8.039603 TGCTGGTCACATTTTAATACTAGTTG 57.960 34.615 0.00 0.00 0.00 3.16
627 628 8.512138 GTTGCTGGTCACATTTTAATACTAGTT 58.488 33.333 0.00 0.00 0.00 2.24
628 629 7.663905 TGTTGCTGGTCACATTTTAATACTAGT 59.336 33.333 0.00 0.00 0.00 2.57
629 630 8.039603 TGTTGCTGGTCACATTTTAATACTAG 57.960 34.615 0.00 0.00 0.00 2.57
630 631 7.987750 TGTTGCTGGTCACATTTTAATACTA 57.012 32.000 0.00 0.00 0.00 1.82
631 632 6.892658 TGTTGCTGGTCACATTTTAATACT 57.107 33.333 0.00 0.00 0.00 2.12
632 633 6.364976 GGTTGTTGCTGGTCACATTTTAATAC 59.635 38.462 0.00 0.00 0.00 1.89
633 634 6.040955 TGGTTGTTGCTGGTCACATTTTAATA 59.959 34.615 0.00 0.00 0.00 0.98
634 635 5.163364 TGGTTGTTGCTGGTCACATTTTAAT 60.163 36.000 0.00 0.00 0.00 1.40
635 636 4.160439 TGGTTGTTGCTGGTCACATTTTAA 59.840 37.500 0.00 0.00 0.00 1.52
636 637 3.701542 TGGTTGTTGCTGGTCACATTTTA 59.298 39.130 0.00 0.00 0.00 1.52
637 638 2.499289 TGGTTGTTGCTGGTCACATTTT 59.501 40.909 0.00 0.00 0.00 1.82
638 639 2.106566 TGGTTGTTGCTGGTCACATTT 58.893 42.857 0.00 0.00 0.00 2.32
639 640 1.774110 TGGTTGTTGCTGGTCACATT 58.226 45.000 0.00 0.00 0.00 2.71
640 641 1.408702 GTTGGTTGTTGCTGGTCACAT 59.591 47.619 0.00 0.00 0.00 3.21
641 642 0.814457 GTTGGTTGTTGCTGGTCACA 59.186 50.000 0.00 0.00 0.00 3.58
642 643 0.814457 TGTTGGTTGTTGCTGGTCAC 59.186 50.000 0.00 0.00 0.00 3.67
643 644 1.550327 TTGTTGGTTGTTGCTGGTCA 58.450 45.000 0.00 0.00 0.00 4.02
644 645 2.362077 AGATTGTTGGTTGTTGCTGGTC 59.638 45.455 0.00 0.00 0.00 4.02
645 646 2.362077 GAGATTGTTGGTTGTTGCTGGT 59.638 45.455 0.00 0.00 0.00 4.00
646 647 2.624838 AGAGATTGTTGGTTGTTGCTGG 59.375 45.455 0.00 0.00 0.00 4.85
647 648 3.996150 AGAGATTGTTGGTTGTTGCTG 57.004 42.857 0.00 0.00 0.00 4.41
648 649 4.718961 AGTAGAGATTGTTGGTTGTTGCT 58.281 39.130 0.00 0.00 0.00 3.91
649 650 4.083271 GGAGTAGAGATTGTTGGTTGTTGC 60.083 45.833 0.00 0.00 0.00 4.17
650 651 5.308825 AGGAGTAGAGATTGTTGGTTGTTG 58.691 41.667 0.00 0.00 0.00 3.33
651 652 5.568620 AGGAGTAGAGATTGTTGGTTGTT 57.431 39.130 0.00 0.00 0.00 2.83
652 653 6.681729 TTAGGAGTAGAGATTGTTGGTTGT 57.318 37.500 0.00 0.00 0.00 3.32
653 654 7.106239 ACATTAGGAGTAGAGATTGTTGGTTG 58.894 38.462 0.00 0.00 0.00 3.77
654 655 7.181125 AGACATTAGGAGTAGAGATTGTTGGTT 59.819 37.037 0.00 0.00 0.00 3.67
655 656 6.670027 AGACATTAGGAGTAGAGATTGTTGGT 59.330 38.462 0.00 0.00 0.00 3.67
656 657 7.118496 AGACATTAGGAGTAGAGATTGTTGG 57.882 40.000 0.00 0.00 0.00 3.77
657 658 7.776107 TGAGACATTAGGAGTAGAGATTGTTG 58.224 38.462 0.00 0.00 0.00 3.33
658 659 7.617723 ACTGAGACATTAGGAGTAGAGATTGTT 59.382 37.037 0.00 0.00 0.00 2.83
659 660 7.122715 ACTGAGACATTAGGAGTAGAGATTGT 58.877 38.462 0.00 0.00 0.00 2.71
660 661 7.581213 ACTGAGACATTAGGAGTAGAGATTG 57.419 40.000 0.00 0.00 0.00 2.67
687 688 2.304751 AAACCCGAAACGCGATCTAT 57.695 45.000 15.93 0.00 44.57 1.98
691 692 3.835378 AAATAAAACCCGAAACGCGAT 57.165 38.095 15.93 0.00 44.57 4.58
738 740 5.550403 TGGGAGGAAGTACCAAAGAAGTATT 59.450 40.000 0.00 0.00 42.04 1.89
831 844 4.823790 TTTTCGTAGGTTTTCTTCCAGC 57.176 40.909 0.00 0.00 0.00 4.85
963 1011 3.082579 GCGGCTTGGGATCTCGTCT 62.083 63.158 0.00 0.00 0.00 4.18
1265 2830 3.775654 CTCGGAGGGAGGCACCAC 61.776 72.222 2.69 0.00 39.22 4.16
1288 2853 4.787280 CTGACGCCCCTCTCCCCT 62.787 72.222 0.00 0.00 0.00 4.79
1438 3003 1.323271 GCCCGTCAGAGACCATCTCA 61.323 60.000 8.48 0.00 45.73 3.27
1546 3112 0.032130 GATCGATCAAGCTACGGCCA 59.968 55.000 20.52 0.00 39.73 5.36
1636 3214 5.475273 TGCTATTCTCTCGCAAAATTCTG 57.525 39.130 0.00 0.00 0.00 3.02
2051 3763 3.222603 GACATTGGTTGGTGAGGAACTT 58.777 45.455 0.00 0.00 41.55 2.66
2115 3827 2.882927 ATACGCTCGGCAGAACAATA 57.117 45.000 0.00 0.00 0.00 1.90
2360 5080 6.528321 ATCTAATTAGAAGCAGCAGTGCATA 58.472 36.000 18.79 0.00 42.37 3.14
2706 5426 1.414919 TGTAAGAGAACCGCACCAGTT 59.585 47.619 0.00 0.00 0.00 3.16
3004 5732 1.853963 TCTTCTCTCACCTACAGGCC 58.146 55.000 0.00 0.00 39.32 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.