Multiple sequence alignment - TraesCS2B01G208800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G208800 chr2B 100.000 6779 0 0 1 6779 190028000 190021222 0.000000e+00 12519.0
1 TraesCS2B01G208800 chr2B 80.180 666 117 10 6094 6757 780011983 780012635 1.020000e-132 484.0
2 TraesCS2B01G208800 chr2B 74.189 678 141 27 6111 6779 50405782 50406434 1.130000e-62 252.0
3 TraesCS2B01G208800 chr2B 72.988 733 115 48 117 807 49410473 49409782 5.400000e-41 180.0
4 TraesCS2B01G208800 chr2B 84.507 71 9 2 112 181 790217218 790217149 1.220000e-07 69.4
5 TraesCS2B01G208800 chr2D 92.417 2110 98 28 3878 5958 133770639 133768563 0.000000e+00 2953.0
6 TraesCS2B01G208800 chr2D 94.411 1342 59 7 999 2332 133773691 133772358 0.000000e+00 2049.0
7 TraesCS2B01G208800 chr2D 95.889 900 23 4 2968 3857 133771760 133770865 0.000000e+00 1445.0
8 TraesCS2B01G208800 chr2D 94.144 444 24 2 2350 2791 133772225 133771782 0.000000e+00 675.0
9 TraesCS2B01G208800 chr2D 77.867 750 142 20 6037 6779 651067177 651067909 1.730000e-120 444.0
10 TraesCS2B01G208800 chr2D 96.269 134 3 1 845 976 133773811 133773678 1.140000e-52 219.0
11 TraesCS2B01G208800 chr2D 82.877 146 16 8 358 498 29713351 29713492 9.230000e-24 122.0
12 TraesCS2B01G208800 chr2A 93.280 2009 81 16 999 2975 141510707 141508721 0.000000e+00 2913.0
13 TraesCS2B01G208800 chr2A 94.824 1449 57 7 3876 5308 141507566 141506120 0.000000e+00 2244.0
14 TraesCS2B01G208800 chr2A 95.657 898 28 2 2968 3857 141508685 141507791 0.000000e+00 1432.0
15 TraesCS2B01G208800 chr2A 90.240 625 39 11 5347 5960 141506124 141505511 0.000000e+00 797.0
16 TraesCS2B01G208800 chr2A 79.480 692 121 16 6094 6779 776604693 776604017 7.960000e-129 472.0
17 TraesCS2B01G208800 chr2A 77.358 583 116 12 6197 6775 392860220 392859650 1.410000e-86 331.0
18 TraesCS2B01G208800 chr2A 79.528 127 12 5 853 976 141510809 141510694 2.030000e-10 78.7
19 TraesCS2B01G208800 chr2A 95.122 41 1 1 5732 5772 130799660 130799621 5.680000e-06 63.9
20 TraesCS2B01G208800 chr5D 80.058 687 116 15 6094 6775 396812705 396813375 2.200000e-134 490.0
21 TraesCS2B01G208800 chr5D 77.800 509 66 30 317 804 311369828 311369346 3.120000e-68 270.0
22 TraesCS2B01G208800 chr5D 85.590 229 28 5 3 227 311370070 311369843 1.140000e-57 235.0
23 TraesCS2B01G208800 chr5D 91.667 168 13 1 4955 5121 175299901 175300068 1.470000e-56 231.0
24 TraesCS2B01G208800 chr5D 73.465 505 65 40 348 803 65882267 65882751 7.140000e-25 126.0
25 TraesCS2B01G208800 chr5D 83.333 84 13 1 5533 5615 549769866 549769783 7.290000e-10 76.8
26 TraesCS2B01G208800 chr1B 79.678 684 114 17 6101 6779 675464436 675463773 2.860000e-128 470.0
27 TraesCS2B01G208800 chr1B 89.583 96 7 1 234 329 534740548 534740456 1.190000e-22 119.0
28 TraesCS2B01G208800 chr4D 76.205 664 137 17 6121 6779 240168513 240169160 1.410000e-86 331.0
29 TraesCS2B01G208800 chr4D 95.000 40 1 1 112 150 72133610 72133571 2.040000e-05 62.1
30 TraesCS2B01G208800 chr4D 97.222 36 0 1 112 147 467741345 467741311 7.340000e-05 60.2
31 TraesCS2B01G208800 chr6D 95.455 154 7 0 4957 5110 392273073 392273226 5.250000e-61 246.0
32 TraesCS2B01G208800 chr6D 75.403 496 111 11 6199 6689 143867410 143866921 5.290000e-56 230.0
33 TraesCS2B01G208800 chr6D 85.586 111 12 2 234 343 458471581 458471474 5.560000e-21 113.0
34 TraesCS2B01G208800 chr6D 80.519 154 23 5 348 498 453753960 453754109 2.000000e-20 111.0
35 TraesCS2B01G208800 chr3A 85.537 242 28 7 112 348 32400127 32400366 5.250000e-61 246.0
36 TraesCS2B01G208800 chr3A 83.721 86 11 3 5531 5615 476238418 476238501 2.030000e-10 78.7
37 TraesCS2B01G208800 chr3A 95.349 43 2 0 5658 5700 417929350 417929392 1.220000e-07 69.4
38 TraesCS2B01G208800 chr6A 94.839 155 8 0 4956 5110 411770251 411770405 6.790000e-60 243.0
39 TraesCS2B01G208800 chr6A 84.733 131 17 3 221 348 7586481 7586611 1.980000e-25 128.0
40 TraesCS2B01G208800 chr6A 95.122 41 2 0 5660 5700 593779947 593779987 1.580000e-06 65.8
41 TraesCS2B01G208800 chr7B 94.231 156 9 0 4955 5110 505937311 505937466 8.790000e-59 239.0
42 TraesCS2B01G208800 chr7B 89.831 59 5 1 112 169 336664953 336664895 2.620000e-09 75.0
43 TraesCS2B01G208800 chr4B 94.771 153 8 0 4958 5110 106227409 106227561 8.790000e-59 239.0
44 TraesCS2B01G208800 chr4B 76.615 325 43 16 382 679 667888897 667889215 1.520000e-31 148.0
45 TraesCS2B01G208800 chr7D 92.727 165 10 2 4954 5117 34757022 34756859 3.160000e-58 237.0
46 TraesCS2B01G208800 chr3D 92.262 168 10 3 4958 5125 322435292 322435456 1.140000e-57 235.0
47 TraesCS2B01G208800 chr3D 95.349 43 2 0 5658 5700 314622174 314622216 1.220000e-07 69.4
48 TraesCS2B01G208800 chr5A 84.298 242 28 8 112 347 543565791 543566028 1.900000e-55 228.0
49 TraesCS2B01G208800 chr5A 86.777 121 11 3 234 352 543565791 543565908 5.520000e-26 130.0
50 TraesCS2B01G208800 chr5A 73.211 489 75 39 353 800 290932599 290932126 7.140000e-25 126.0
51 TraesCS2B01G208800 chr5B 77.953 254 47 5 6107 6360 533090389 533090145 4.240000e-32 150.0
52 TraesCS2B01G208800 chr5B 86.667 120 11 2 234 352 37054683 37054568 1.980000e-25 128.0
53 TraesCS2B01G208800 chr5B 86.667 120 11 2 234 352 87139517 87139632 1.980000e-25 128.0
54 TraesCS2B01G208800 chr5B 85.345 116 12 3 235 348 333191843 333191731 1.540000e-21 115.0
55 TraesCS2B01G208800 chr5B 90.566 53 2 2 112 163 16430336 16430286 4.390000e-07 67.6
56 TraesCS2B01G208800 chr1A 87.059 85 10 1 5532 5615 47827260 47827176 2.010000e-15 95.3
57 TraesCS2B01G208800 chr1D 76.042 192 33 9 6108 6298 41913905 41914084 3.370000e-13 87.9
58 TraesCS2B01G208800 chr3B 97.500 40 1 0 5661 5700 405228857 405228818 1.220000e-07 69.4
59 TraesCS2B01G208800 chr3B 95.349 43 2 0 5658 5700 621148532 621148574 1.220000e-07 69.4
60 TraesCS2B01G208800 chr3B 95.000 40 2 0 5661 5700 126580149 126580110 5.680000e-06 63.9
61 TraesCS2B01G208800 chrUn 93.182 44 3 0 5657 5700 41744 41787 1.580000e-06 65.8
62 TraesCS2B01G208800 chr6B 95.238 42 0 2 112 152 59103014 59102974 1.580000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G208800 chr2B 190021222 190028000 6778 True 12519.00 12519 100.0000 1 6779 1 chr2B.!!$R2 6778
1 TraesCS2B01G208800 chr2B 780011983 780012635 652 False 484.00 484 80.1800 6094 6757 1 chr2B.!!$F2 663
2 TraesCS2B01G208800 chr2B 50405782 50406434 652 False 252.00 252 74.1890 6111 6779 1 chr2B.!!$F1 668
3 TraesCS2B01G208800 chr2D 133768563 133773811 5248 True 1468.20 2953 94.6260 845 5958 5 chr2D.!!$R1 5113
4 TraesCS2B01G208800 chr2D 651067177 651067909 732 False 444.00 444 77.8670 6037 6779 1 chr2D.!!$F2 742
5 TraesCS2B01G208800 chr2A 141505511 141510809 5298 True 1492.94 2913 90.7058 853 5960 5 chr2A.!!$R4 5107
6 TraesCS2B01G208800 chr2A 776604017 776604693 676 True 472.00 472 79.4800 6094 6779 1 chr2A.!!$R3 685
7 TraesCS2B01G208800 chr2A 392859650 392860220 570 True 331.00 331 77.3580 6197 6775 1 chr2A.!!$R2 578
8 TraesCS2B01G208800 chr5D 396812705 396813375 670 False 490.00 490 80.0580 6094 6775 1 chr5D.!!$F3 681
9 TraesCS2B01G208800 chr5D 311369346 311370070 724 True 252.50 270 81.6950 3 804 2 chr5D.!!$R2 801
10 TraesCS2B01G208800 chr1B 675463773 675464436 663 True 470.00 470 79.6780 6101 6779 1 chr1B.!!$R2 678
11 TraesCS2B01G208800 chr4D 240168513 240169160 647 False 331.00 331 76.2050 6121 6779 1 chr4D.!!$F1 658

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
800 850 0.095935 ACACTACGATCGTTCCGTCG 59.904 55.000 27.88 16.02 40.95 5.12 F
836 886 0.179225 GCAATGTGCGTCCGTTAGTG 60.179 55.000 0.00 0.00 31.71 2.74 F
2454 2649 0.322816 TGGGTGCTGAGAAATGGCTC 60.323 55.000 0.00 0.00 35.46 4.70 F
2787 2983 0.734889 GTATGTCTGTGGTGCATGGC 59.265 55.000 0.00 0.00 0.00 4.40 F
3356 3601 1.280457 ACAGCTTTCTGGGGAGGTAG 58.720 55.000 0.00 0.00 44.54 3.18 F
4870 5342 1.003233 GAGCCTGTCCCGCTTTTCT 60.003 57.895 0.00 0.00 36.48 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2442 2637 1.476488 TCGATGTCGAGCCATTTCTCA 59.524 47.619 0.21 0.0 44.22 3.27 R
2619 2814 2.004583 TAACTGAGATGGAAACCGCG 57.995 50.000 0.00 0.0 0.00 6.46 R
3366 3611 2.298610 CATGTGCAGATCCTCTTGCAT 58.701 47.619 10.19 0.0 34.72 3.96 R
4532 4995 1.028130 TAGCTGTGCTCTCTCGATGG 58.972 55.000 0.00 0.0 40.44 3.51 R
5222 5805 2.416431 GCTGCCTCAAATGGATGTCAAC 60.416 50.000 0.00 0.0 0.00 3.18 R
6481 7093 0.031716 CAGAGGGGACTGAGGGATGA 60.032 60.000 0.00 0.0 44.43 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.830201 TGAAATTCCGAACAATTTGAAATCAT 57.170 26.923 2.79 0.00 36.33 2.45
39 40 7.377398 TCCGAACAATTTGAAATCATGAACAT 58.623 30.769 0.00 0.00 0.00 2.71
70 71 8.614469 AAAGTTCTTGAACATTTTTGGAAACA 57.386 26.923 14.80 0.00 39.83 2.83
71 72 7.595311 AGTTCTTGAACATTTTTGGAAACAC 57.405 32.000 14.80 0.00 42.67 3.32
72 73 6.310224 AGTTCTTGAACATTTTTGGAAACACG 59.690 34.615 14.80 0.00 42.67 4.49
73 74 5.955488 TCTTGAACATTTTTGGAAACACGA 58.045 33.333 0.00 0.00 42.67 4.35
74 75 6.390721 TCTTGAACATTTTTGGAAACACGAA 58.609 32.000 0.00 0.00 42.67 3.85
75 76 7.038659 TCTTGAACATTTTTGGAAACACGAAT 58.961 30.769 0.00 0.00 42.67 3.34
76 77 8.191446 TCTTGAACATTTTTGGAAACACGAATA 58.809 29.630 0.00 0.00 42.67 1.75
77 78 7.922505 TGAACATTTTTGGAAACACGAATAG 57.077 32.000 0.00 0.00 42.67 1.73
78 79 7.484975 TGAACATTTTTGGAAACACGAATAGT 58.515 30.769 0.00 0.00 42.67 2.12
79 80 8.622157 TGAACATTTTTGGAAACACGAATAGTA 58.378 29.630 0.00 0.00 42.67 1.82
82 83 9.010029 ACATTTTTGGAAACACGAATAGTATCT 57.990 29.630 0.00 0.00 42.67 1.98
93 94 9.530633 AACACGAATAGTATCTAATTTCTGACC 57.469 33.333 0.00 0.00 0.00 4.02
94 95 8.692710 ACACGAATAGTATCTAATTTCTGACCA 58.307 33.333 0.00 0.00 0.00 4.02
95 96 9.529325 CACGAATAGTATCTAATTTCTGACCAA 57.471 33.333 0.00 0.00 0.00 3.67
110 111 8.830201 TTTCTGACCAAAATTTGTAATCATGG 57.170 30.769 4.92 0.00 0.00 3.66
111 112 7.773489 TCTGACCAAAATTTGTAATCATGGA 57.227 32.000 9.30 0.00 0.00 3.41
112 113 8.187913 TCTGACCAAAATTTGTAATCATGGAA 57.812 30.769 9.30 0.00 0.00 3.53
113 114 8.646004 TCTGACCAAAATTTGTAATCATGGAAA 58.354 29.630 9.30 0.00 0.00 3.13
114 115 9.270640 CTGACCAAAATTTGTAATCATGGAAAA 57.729 29.630 9.30 0.00 0.00 2.29
115 116 9.618890 TGACCAAAATTTGTAATCATGGAAAAA 57.381 25.926 9.30 0.00 0.00 1.94
117 118 9.065798 ACCAAAATTTGTAATCATGGAAAAAGG 57.934 29.630 9.30 0.00 0.00 3.11
118 119 9.282569 CCAAAATTTGTAATCATGGAAAAAGGA 57.717 29.630 4.92 0.00 0.00 3.36
121 122 9.844257 AAATTTGTAATCATGGAAAAAGGAACA 57.156 25.926 0.00 0.00 0.00 3.18
124 125 9.844257 TTTGTAATCATGGAAAAAGGAACATTT 57.156 25.926 0.00 0.00 0.00 2.32
125 126 9.487790 TTGTAATCATGGAAAAAGGAACATTTC 57.512 29.630 0.00 0.00 36.25 2.17
126 127 8.646004 TGTAATCATGGAAAAAGGAACATTTCA 58.354 29.630 0.00 0.00 37.89 2.69
127 128 9.657419 GTAATCATGGAAAAAGGAACATTTCAT 57.343 29.630 0.00 0.00 37.89 2.57
128 129 8.556213 AATCATGGAAAAAGGAACATTTCATG 57.444 30.769 0.00 0.00 37.89 3.07
129 130 7.300556 TCATGGAAAAAGGAACATTTCATGA 57.699 32.000 4.93 4.93 37.89 3.07
130 131 7.733969 TCATGGAAAAAGGAACATTTCATGAA 58.266 30.769 3.38 3.38 37.89 2.57
131 132 8.209584 TCATGGAAAAAGGAACATTTCATGAAA 58.790 29.630 22.52 22.52 37.89 2.69
132 133 9.005777 CATGGAAAAAGGAACATTTCATGAAAT 57.994 29.630 24.83 24.83 41.33 2.17
133 134 8.977267 TGGAAAAAGGAACATTTCATGAAATT 57.023 26.923 27.30 17.07 38.84 1.82
134 135 9.054922 TGGAAAAAGGAACATTTCATGAAATTC 57.945 29.630 27.30 22.98 38.84 2.17
135 136 8.506437 GGAAAAAGGAACATTTCATGAAATTCC 58.494 33.333 30.01 30.01 38.84 3.01
136 137 7.656707 AAAAGGAACATTTCATGAAATTCCG 57.343 32.000 30.23 22.53 41.16 4.30
137 138 6.588719 AAGGAACATTTCATGAAATTCCGA 57.411 33.333 30.23 11.40 41.16 4.55
138 139 6.588719 AGGAACATTTCATGAAATTCCGAA 57.411 33.333 30.23 10.81 41.16 4.30
139 140 6.389906 AGGAACATTTCATGAAATTCCGAAC 58.610 36.000 30.23 19.84 41.16 3.95
140 141 6.015519 AGGAACATTTCATGAAATTCCGAACA 60.016 34.615 30.23 9.62 41.16 3.18
141 142 6.644592 GGAACATTTCATGAAATTCCGAACAA 59.355 34.615 27.30 1.38 38.84 2.83
142 143 7.170658 GGAACATTTCATGAAATTCCGAACAAA 59.829 33.333 27.30 0.85 38.84 2.83
143 144 8.430801 AACATTTCATGAAATTCCGAACAAAA 57.569 26.923 27.30 0.65 38.84 2.44
144 145 8.430801 ACATTTCATGAAATTCCGAACAAAAA 57.569 26.923 27.30 0.21 38.84 1.94
145 146 9.054922 ACATTTCATGAAATTCCGAACAAAAAT 57.945 25.926 27.30 3.42 38.84 1.82
146 147 9.881529 CATTTCATGAAATTCCGAACAAAAATT 57.118 25.926 27.30 2.80 38.84 1.82
148 149 9.713740 TTTCATGAAATTCCGAACAAAAATTTG 57.286 25.926 16.91 4.40 43.62 2.32
149 150 8.654230 TCATGAAATTCCGAACAAAAATTTGA 57.346 26.923 12.54 0.00 40.55 2.69
150 151 9.270640 TCATGAAATTCCGAACAAAAATTTGAT 57.729 25.926 12.54 0.53 40.55 2.57
157 158 9.703892 ATTCCGAACAAAAATTTGATATTGTGA 57.296 25.926 12.54 0.00 40.55 3.58
158 159 9.534565 TTCCGAACAAAAATTTGATATTGTGAA 57.465 25.926 12.54 4.51 40.55 3.18
159 160 8.973378 TCCGAACAAAAATTTGATATTGTGAAC 58.027 29.630 12.54 2.80 40.55 3.18
160 161 8.759641 CCGAACAAAAATTTGATATTGTGAACA 58.240 29.630 12.54 0.00 40.55 3.18
230 232 7.581011 AATTTCTGACCAAATTTGTAATCGC 57.419 32.000 16.73 0.88 33.02 4.58
258 261 8.921353 AAAATGGAACATTTCATGAAATTCCA 57.079 26.923 35.89 35.89 45.67 3.53
278 281 9.649167 AATTCCAAACAAAAATTTGAAATTGCA 57.351 22.222 12.54 0.00 41.28 4.08
355 402 7.784633 TTGACCAAAATTTGAATTCACCTTC 57.215 32.000 7.89 0.00 0.00 3.46
369 416 9.748708 TGAATTCACCTTCTGAACAATAAAAAG 57.251 29.630 3.38 0.00 41.87 2.27
401 451 8.650490 ACATATTTTGGAGTTCCTGAACATTTT 58.350 29.630 12.21 0.00 43.47 1.82
402 452 9.492973 CATATTTTGGAGTTCCTGAACATTTTT 57.507 29.630 12.21 0.00 43.47 1.94
427 477 9.751542 TTTCAACTTGTGAACAAAGTTTAAAGA 57.248 25.926 0.00 0.00 46.09 2.52
428 478 9.921637 TTCAACTTGTGAACAAAGTTTAAAGAT 57.078 25.926 0.00 0.00 41.47 2.40
464 514 9.847706 TTTAATTTCTGCGCATTTTCTATAACA 57.152 25.926 12.24 0.00 0.00 2.41
465 515 7.975866 AATTTCTGCGCATTTTCTATAACAG 57.024 32.000 12.24 0.00 0.00 3.16
466 516 6.735678 TTTCTGCGCATTTTCTATAACAGA 57.264 33.333 12.24 0.00 0.00 3.41
467 517 6.735678 TTCTGCGCATTTTCTATAACAGAA 57.264 33.333 12.24 2.79 41.66 3.02
468 518 6.106877 TCTGCGCATTTTCTATAACAGAAC 57.893 37.500 12.24 0.00 43.09 3.01
469 519 5.641636 TCTGCGCATTTTCTATAACAGAACA 59.358 36.000 12.24 0.00 43.09 3.18
470 520 6.316140 TCTGCGCATTTTCTATAACAGAACAT 59.684 34.615 12.24 0.00 43.09 2.71
471 521 6.851609 TGCGCATTTTCTATAACAGAACATT 58.148 32.000 5.66 0.00 43.09 2.71
472 522 7.312154 TGCGCATTTTCTATAACAGAACATTT 58.688 30.769 5.66 0.00 43.09 2.32
473 523 7.812191 TGCGCATTTTCTATAACAGAACATTTT 59.188 29.630 5.66 0.00 43.09 1.82
474 524 8.647226 GCGCATTTTCTATAACAGAACATTTTT 58.353 29.630 0.30 0.00 43.09 1.94
559 609 9.849166 AAAGTCAACTTGAAAAAGAAATAACGA 57.151 25.926 0.00 0.00 36.12 3.85
560 610 9.849166 AAGTCAACTTGAAAAAGAAATAACGAA 57.151 25.926 0.00 0.00 34.38 3.85
561 611 9.285770 AGTCAACTTGAAAAAGAAATAACGAAC 57.714 29.630 0.00 0.00 0.00 3.95
562 612 9.068008 GTCAACTTGAAAAAGAAATAACGAACA 57.932 29.630 0.00 0.00 0.00 3.18
563 613 9.627395 TCAACTTGAAAAAGAAATAACGAACAA 57.373 25.926 0.00 0.00 0.00 2.83
630 680 9.875691 AACATAAAAGAAGAAAAAGAAACAGCT 57.124 25.926 0.00 0.00 0.00 4.24
676 726 4.483476 AAAGGGAAACGAGACAAAATCG 57.517 40.909 0.00 0.00 45.54 3.34
683 733 2.510615 CGAGACAAAATCGTTCAGGC 57.489 50.000 0.00 0.00 35.48 4.85
684 734 1.798223 CGAGACAAAATCGTTCAGGCA 59.202 47.619 0.00 0.00 35.48 4.75
685 735 2.411547 CGAGACAAAATCGTTCAGGCAC 60.412 50.000 0.00 0.00 35.48 5.01
686 736 1.880027 AGACAAAATCGTTCAGGCACC 59.120 47.619 0.00 0.00 0.00 5.01
687 737 1.880027 GACAAAATCGTTCAGGCACCT 59.120 47.619 0.00 0.00 0.00 4.00
688 738 2.293399 GACAAAATCGTTCAGGCACCTT 59.707 45.455 0.00 0.00 0.00 3.50
689 739 2.293399 ACAAAATCGTTCAGGCACCTTC 59.707 45.455 0.00 0.00 0.00 3.46
690 740 2.554032 CAAAATCGTTCAGGCACCTTCT 59.446 45.455 0.00 0.00 0.00 2.85
691 741 3.695830 AAATCGTTCAGGCACCTTCTA 57.304 42.857 0.00 0.00 0.00 2.10
692 742 2.969628 ATCGTTCAGGCACCTTCTAG 57.030 50.000 0.00 0.00 0.00 2.43
693 743 1.919240 TCGTTCAGGCACCTTCTAGA 58.081 50.000 0.00 0.00 0.00 2.43
694 744 2.244695 TCGTTCAGGCACCTTCTAGAA 58.755 47.619 4.81 4.81 0.00 2.10
695 745 2.231478 TCGTTCAGGCACCTTCTAGAAG 59.769 50.000 23.31 23.31 38.14 2.85
696 746 2.351455 GTTCAGGCACCTTCTAGAAGC 58.649 52.381 24.58 15.44 37.11 3.86
697 747 1.944177 TCAGGCACCTTCTAGAAGCT 58.056 50.000 24.58 14.30 37.11 3.74
698 748 2.260822 TCAGGCACCTTCTAGAAGCTT 58.739 47.619 24.58 12.15 37.11 3.74
699 749 2.234908 TCAGGCACCTTCTAGAAGCTTC 59.765 50.000 24.58 19.11 37.11 3.86
700 750 1.557371 AGGCACCTTCTAGAAGCTTCC 59.443 52.381 24.58 21.45 37.11 3.46
701 751 1.557371 GGCACCTTCTAGAAGCTTCCT 59.443 52.381 24.58 12.48 37.11 3.36
702 752 2.766828 GGCACCTTCTAGAAGCTTCCTA 59.233 50.000 24.58 12.93 37.11 2.94
703 753 3.197983 GGCACCTTCTAGAAGCTTCCTAA 59.802 47.826 24.58 13.13 37.11 2.69
704 754 4.323562 GGCACCTTCTAGAAGCTTCCTAAA 60.324 45.833 24.58 12.79 37.11 1.85
705 755 5.246307 GCACCTTCTAGAAGCTTCCTAAAA 58.754 41.667 24.58 11.12 37.11 1.52
706 756 5.122554 GCACCTTCTAGAAGCTTCCTAAAAC 59.877 44.000 24.58 0.00 37.11 2.43
707 757 5.644206 CACCTTCTAGAAGCTTCCTAAAACC 59.356 44.000 24.58 0.00 37.11 3.27
708 758 5.309806 ACCTTCTAGAAGCTTCCTAAAACCA 59.690 40.000 24.58 0.00 37.11 3.67
709 759 6.012421 ACCTTCTAGAAGCTTCCTAAAACCAT 60.012 38.462 24.58 3.61 37.11 3.55
710 760 7.182206 ACCTTCTAGAAGCTTCCTAAAACCATA 59.818 37.037 24.58 4.62 37.11 2.74
711 761 8.047310 CCTTCTAGAAGCTTCCTAAAACCATAA 58.953 37.037 24.58 3.02 37.11 1.90
712 762 9.449719 CTTCTAGAAGCTTCCTAAAACCATAAA 57.550 33.333 22.81 1.86 0.00 1.40
713 763 9.802039 TTCTAGAAGCTTCCTAAAACCATAAAA 57.198 29.630 22.81 0.00 0.00 1.52
714 764 9.802039 TCTAGAAGCTTCCTAAAACCATAAAAA 57.198 29.630 22.81 0.00 0.00 1.94
733 783 4.848562 AAAAACCGGAGTTTGATCCTTC 57.151 40.909 9.46 0.00 45.54 3.46
734 784 3.790089 AAACCGGAGTTTGATCCTTCT 57.210 42.857 9.46 0.00 44.57 2.85
735 785 3.336138 AACCGGAGTTTGATCCTTCTC 57.664 47.619 9.46 0.00 37.20 2.87
736 786 2.257207 ACCGGAGTTTGATCCTTCTCA 58.743 47.619 9.46 0.00 37.20 3.27
737 787 2.637872 ACCGGAGTTTGATCCTTCTCAA 59.362 45.455 9.46 0.00 37.20 3.02
738 788 3.072476 ACCGGAGTTTGATCCTTCTCAAA 59.928 43.478 9.46 0.00 41.56 2.69
739 789 4.072131 CCGGAGTTTGATCCTTCTCAAAA 58.928 43.478 0.00 0.00 44.38 2.44
740 790 4.518970 CCGGAGTTTGATCCTTCTCAAAAA 59.481 41.667 0.00 0.00 44.38 1.94
741 791 5.452777 CGGAGTTTGATCCTTCTCAAAAAC 58.547 41.667 1.16 2.86 44.38 2.43
742 792 5.562890 CGGAGTTTGATCCTTCTCAAAAACC 60.563 44.000 1.16 6.90 44.38 3.27
743 793 5.301805 GGAGTTTGATCCTTCTCAAAAACCA 59.698 40.000 13.42 0.00 44.38 3.67
744 794 6.396829 AGTTTGATCCTTCTCAAAAACCAG 57.603 37.500 1.16 0.00 44.38 4.00
745 795 5.893824 AGTTTGATCCTTCTCAAAAACCAGT 59.106 36.000 1.16 0.00 44.38 4.00
746 796 7.060421 AGTTTGATCCTTCTCAAAAACCAGTA 58.940 34.615 1.16 0.00 44.38 2.74
747 797 7.725844 AGTTTGATCCTTCTCAAAAACCAGTAT 59.274 33.333 1.16 0.00 44.38 2.12
748 798 9.010029 GTTTGATCCTTCTCAAAAACCAGTATA 57.990 33.333 1.16 0.00 44.38 1.47
749 799 9.753674 TTTGATCCTTCTCAAAAACCAGTATAT 57.246 29.630 0.00 0.00 41.03 0.86
750 800 8.737168 TGATCCTTCTCAAAAACCAGTATATG 57.263 34.615 0.00 0.00 0.00 1.78
751 801 8.328758 TGATCCTTCTCAAAAACCAGTATATGT 58.671 33.333 0.00 0.00 0.00 2.29
752 802 7.921786 TCCTTCTCAAAAACCAGTATATGTG 57.078 36.000 0.00 0.00 0.00 3.21
753 803 7.458397 TCCTTCTCAAAAACCAGTATATGTGT 58.542 34.615 0.00 0.00 0.00 3.72
754 804 8.598916 TCCTTCTCAAAAACCAGTATATGTGTA 58.401 33.333 0.00 0.00 0.00 2.90
755 805 8.665685 CCTTCTCAAAAACCAGTATATGTGTAC 58.334 37.037 0.00 0.00 0.00 2.90
756 806 9.214957 CTTCTCAAAAACCAGTATATGTGTACA 57.785 33.333 0.00 0.00 0.00 2.90
757 807 8.542497 TCTCAAAAACCAGTATATGTGTACAC 57.458 34.615 19.36 19.36 0.00 2.90
758 808 7.329962 TCTCAAAAACCAGTATATGTGTACACG 59.670 37.037 20.61 6.62 0.00 4.49
759 809 5.789710 AAAACCAGTATATGTGTACACGC 57.210 39.130 20.61 8.51 0.00 5.34
760 810 4.730949 AACCAGTATATGTGTACACGCT 57.269 40.909 20.61 12.98 0.00 5.07
761 811 5.840243 AACCAGTATATGTGTACACGCTA 57.160 39.130 20.61 14.65 0.00 4.26
762 812 5.840243 ACCAGTATATGTGTACACGCTAA 57.160 39.130 20.61 3.82 0.00 3.09
763 813 6.211587 ACCAGTATATGTGTACACGCTAAA 57.788 37.500 20.61 3.42 0.00 1.85
764 814 6.038356 ACCAGTATATGTGTACACGCTAAAC 58.962 40.000 20.61 14.07 0.00 2.01
765 815 6.037726 CCAGTATATGTGTACACGCTAAACA 58.962 40.000 20.61 1.98 0.00 2.83
766 816 6.198403 CCAGTATATGTGTACACGCTAAACAG 59.802 42.308 20.61 11.27 0.00 3.16
767 817 5.747197 AGTATATGTGTACACGCTAAACAGC 59.253 40.000 20.61 5.31 0.00 4.40
768 818 2.226602 TGTGTACACGCTAAACAGCA 57.773 45.000 20.61 0.00 34.41 4.41
769 819 2.552031 TGTGTACACGCTAAACAGCAA 58.448 42.857 20.61 0.00 34.41 3.91
770 820 2.285756 TGTGTACACGCTAAACAGCAAC 59.714 45.455 20.61 0.00 34.41 4.17
771 821 2.285756 GTGTACACGCTAAACAGCAACA 59.714 45.455 10.84 0.00 34.41 3.33
772 822 3.059188 GTGTACACGCTAAACAGCAACAT 60.059 43.478 10.84 0.00 34.41 2.71
773 823 2.686558 ACACGCTAAACAGCAACATG 57.313 45.000 0.00 0.00 34.41 3.21
774 824 1.266718 ACACGCTAAACAGCAACATGG 59.733 47.619 0.00 0.00 34.41 3.66
775 825 1.266718 CACGCTAAACAGCAACATGGT 59.733 47.619 0.00 0.00 34.41 3.55
776 826 1.535462 ACGCTAAACAGCAACATGGTC 59.465 47.619 0.00 0.00 34.41 4.02
777 827 1.135689 CGCTAAACAGCAACATGGTCC 60.136 52.381 0.00 0.00 34.41 4.46
778 828 1.135689 GCTAAACAGCAACATGGTCCG 60.136 52.381 0.00 0.00 34.41 4.79
779 829 1.468520 CTAAACAGCAACATGGTCCGG 59.531 52.381 0.00 0.00 0.00 5.14
780 830 1.805428 AAACAGCAACATGGTCCGGC 61.805 55.000 0.00 0.00 0.00 6.13
781 831 2.672651 CAGCAACATGGTCCGGCA 60.673 61.111 0.00 0.00 0.00 5.69
782 832 2.672996 AGCAACATGGTCCGGCAC 60.673 61.111 0.00 0.00 0.00 5.01
783 833 2.983030 GCAACATGGTCCGGCACA 60.983 61.111 0.00 0.00 0.00 4.57
784 834 2.953821 CAACATGGTCCGGCACAC 59.046 61.111 0.00 0.00 0.00 3.82
785 835 1.600636 CAACATGGTCCGGCACACT 60.601 57.895 0.00 0.00 0.00 3.55
786 836 0.321210 CAACATGGTCCGGCACACTA 60.321 55.000 0.00 0.00 0.00 2.74
787 837 0.321298 AACATGGTCCGGCACACTAC 60.321 55.000 0.00 0.00 0.00 2.73
788 838 1.809619 CATGGTCCGGCACACTACG 60.810 63.158 0.00 0.00 0.00 3.51
789 839 1.980232 ATGGTCCGGCACACTACGA 60.980 57.895 0.00 0.00 0.00 3.43
790 840 1.327690 ATGGTCCGGCACACTACGAT 61.328 55.000 0.00 0.00 0.00 3.73
791 841 1.226888 GGTCCGGCACACTACGATC 60.227 63.158 0.00 0.00 0.00 3.69
792 842 1.585521 GTCCGGCACACTACGATCG 60.586 63.158 14.88 14.88 0.00 3.69
793 843 2.042259 TCCGGCACACTACGATCGT 61.042 57.895 25.94 25.94 0.00 3.73
794 844 1.153901 CCGGCACACTACGATCGTT 60.154 57.895 27.88 6.30 0.00 3.85
795 845 1.138047 CCGGCACACTACGATCGTTC 61.138 60.000 27.88 8.65 0.00 3.95
796 846 1.138047 CGGCACACTACGATCGTTCC 61.138 60.000 27.88 15.67 0.00 3.62
797 847 1.138047 GGCACACTACGATCGTTCCG 61.138 60.000 27.88 16.98 0.00 4.30
798 848 0.455633 GCACACTACGATCGTTCCGT 60.456 55.000 27.88 17.63 43.26 4.69
799 849 1.531912 CACACTACGATCGTTCCGTC 58.468 55.000 27.88 0.00 40.95 4.79
800 850 0.095935 ACACTACGATCGTTCCGTCG 59.904 55.000 27.88 16.02 40.95 5.12
801 851 0.371301 CACTACGATCGTTCCGTCGA 59.629 55.000 27.88 5.15 43.86 4.20
807 857 2.686602 ATCGTTCCGTCGATCTCGA 58.313 52.632 0.00 0.00 45.57 4.04
817 867 2.739293 TCGATCTCGACATCTTGACG 57.261 50.000 0.00 0.00 44.22 4.35
818 868 1.116436 CGATCTCGACATCTTGACGC 58.884 55.000 0.00 0.00 43.02 5.19
819 869 1.531883 CGATCTCGACATCTTGACGCA 60.532 52.381 0.00 0.00 43.02 5.24
820 870 2.530177 GATCTCGACATCTTGACGCAA 58.470 47.619 0.00 0.00 35.65 4.85
821 871 2.654749 TCTCGACATCTTGACGCAAT 57.345 45.000 0.00 0.00 35.65 3.56
822 872 2.262211 TCTCGACATCTTGACGCAATG 58.738 47.619 0.00 0.00 35.65 2.82
823 873 1.995484 CTCGACATCTTGACGCAATGT 59.005 47.619 0.00 0.00 35.65 2.71
824 874 1.726248 TCGACATCTTGACGCAATGTG 59.274 47.619 0.00 0.00 35.65 3.21
825 875 1.787989 CGACATCTTGACGCAATGTGC 60.788 52.381 0.00 0.00 40.69 4.57
835 885 2.159181 GCAATGTGCGTCCGTTAGT 58.841 52.632 0.00 0.00 31.71 2.24
836 886 0.179225 GCAATGTGCGTCCGTTAGTG 60.179 55.000 0.00 0.00 31.71 2.74
837 887 1.424403 CAATGTGCGTCCGTTAGTGA 58.576 50.000 0.00 0.00 0.00 3.41
838 888 1.795872 CAATGTGCGTCCGTTAGTGAA 59.204 47.619 0.00 0.00 0.00 3.18
839 889 2.380084 ATGTGCGTCCGTTAGTGAAT 57.620 45.000 0.00 0.00 0.00 2.57
840 890 2.157834 TGTGCGTCCGTTAGTGAATT 57.842 45.000 0.00 0.00 0.00 2.17
841 891 2.063266 TGTGCGTCCGTTAGTGAATTC 58.937 47.619 0.00 0.00 0.00 2.17
842 892 1.392510 GTGCGTCCGTTAGTGAATTCC 59.607 52.381 2.27 0.00 0.00 3.01
843 893 1.274167 TGCGTCCGTTAGTGAATTCCT 59.726 47.619 2.27 2.47 0.00 3.36
867 917 2.203153 GCCACGGCCCGTATGATT 60.203 61.111 9.25 0.00 38.32 2.57
943 1001 4.562143 GCCAGGTTTGATTCTCATGCTTTT 60.562 41.667 0.00 0.00 0.00 2.27
982 1042 3.770625 GCTTGACCTTCTAGCCCTC 57.229 57.895 0.00 0.00 38.90 4.30
983 1043 0.905357 GCTTGACCTTCTAGCCCTCA 59.095 55.000 0.00 0.00 38.90 3.86
984 1044 1.406205 GCTTGACCTTCTAGCCCTCAC 60.406 57.143 0.00 0.00 38.90 3.51
985 1045 1.902508 CTTGACCTTCTAGCCCTCACA 59.097 52.381 0.00 0.00 0.00 3.58
986 1046 2.024176 TGACCTTCTAGCCCTCACAA 57.976 50.000 0.00 0.00 0.00 3.33
987 1047 2.334977 TGACCTTCTAGCCCTCACAAA 58.665 47.619 0.00 0.00 0.00 2.83
988 1048 2.038557 TGACCTTCTAGCCCTCACAAAC 59.961 50.000 0.00 0.00 0.00 2.93
989 1049 2.038557 GACCTTCTAGCCCTCACAAACA 59.961 50.000 0.00 0.00 0.00 2.83
990 1050 2.441750 ACCTTCTAGCCCTCACAAACAA 59.558 45.455 0.00 0.00 0.00 2.83
991 1051 3.117663 ACCTTCTAGCCCTCACAAACAAA 60.118 43.478 0.00 0.00 0.00 2.83
992 1052 3.888930 CCTTCTAGCCCTCACAAACAAAA 59.111 43.478 0.00 0.00 0.00 2.44
993 1053 4.340950 CCTTCTAGCCCTCACAAACAAAAA 59.659 41.667 0.00 0.00 0.00 1.94
1039 1099 0.640768 GCGTCTCGGTTCAGAAATCG 59.359 55.000 1.81 1.81 40.43 3.34
1177 1237 4.465446 CTCCCCTCCGCCTCCTCA 62.465 72.222 0.00 0.00 0.00 3.86
1179 1239 4.465446 CCCCTCCGCCTCCTCAGA 62.465 72.222 0.00 0.00 0.00 3.27
1187 1247 2.363172 GCCTCCTCAGACTCCACCC 61.363 68.421 0.00 0.00 0.00 4.61
1323 1389 3.268032 CCAAAGCCCACCTCCCCT 61.268 66.667 0.00 0.00 0.00 4.79
1681 1747 1.523758 CTGAGGTGAAAAGGAACCCG 58.476 55.000 0.00 0.00 37.13 5.28
1707 1779 9.472361 GAAATGCTATCTCGGTATTTACTTACA 57.528 33.333 0.00 0.00 31.27 2.41
1726 1798 4.192429 ACAATTAGTTGCCAAATCAGCC 57.808 40.909 0.00 0.00 38.96 4.85
1803 1875 1.071385 CGAATGGGCTAGGCTCAATCT 59.929 52.381 16.80 2.37 44.46 2.40
1831 1903 5.470098 TGAAATGCTTTCCAGAGTGTAGTTC 59.530 40.000 6.29 0.00 38.90 3.01
1835 1907 3.799232 GCTTTCCAGAGTGTAGTTCGTGT 60.799 47.826 0.00 0.00 0.00 4.49
1849 1921 6.643770 TGTAGTTCGTGTTTATTGTTCTCTCC 59.356 38.462 0.00 0.00 0.00 3.71
1866 1938 5.990668 TCTCTCCTAATTTGCTCCTTTACC 58.009 41.667 0.00 0.00 0.00 2.85
1882 1954 5.189145 TCCTTTACCCTCCAATCAGTAGTTC 59.811 44.000 0.00 0.00 0.00 3.01
2007 2079 2.798976 TGAGCCACACAAATTTCTGC 57.201 45.000 0.00 0.00 0.00 4.26
2055 2127 3.242284 CCGTCGCACTGTATAATTGTTGG 60.242 47.826 0.00 0.00 0.00 3.77
2108 2180 4.603231 CATGTTTATGGTTGCCAATTGC 57.397 40.909 0.00 0.00 36.95 3.56
2237 2316 6.100404 AGCATGTTACATTGATTTGGTGTT 57.900 33.333 0.00 0.00 0.00 3.32
2240 2319 6.453943 CATGTTACATTGATTTGGTGTTCCA 58.546 36.000 0.00 0.00 42.66 3.53
2285 2364 8.970020 TGCATCAAGAACTCCACATAAATTATT 58.030 29.630 0.00 0.00 0.00 1.40
2332 2411 7.410174 TCCATAGGTTTCACATCCTTTAACAT 58.590 34.615 0.00 0.00 35.51 2.71
2333 2412 7.339212 TCCATAGGTTTCACATCCTTTAACATG 59.661 37.037 0.00 0.00 35.51 3.21
2347 2521 8.731275 TCCTTTAACATGGTATATGTCAGTTG 57.269 34.615 0.00 0.00 0.00 3.16
2454 2649 0.322816 TGGGTGCTGAGAAATGGCTC 60.323 55.000 0.00 0.00 35.46 4.70
2584 2779 6.266323 TCTCGCTCATTTGATCTTACAGTAC 58.734 40.000 0.00 0.00 0.00 2.73
2681 2876 3.759086 TGCTGTCACAAAGTGTTTTGGTA 59.241 39.130 5.17 0.00 46.33 3.25
2765 2961 8.784043 AGATATATGGTAAACGCCTTGAATTTC 58.216 33.333 0.00 0.00 0.00 2.17
2787 2983 0.734889 GTATGTCTGTGGTGCATGGC 59.265 55.000 0.00 0.00 0.00 4.40
2821 3023 6.863126 CCATACAGAAAAATTGTTGACAGTCC 59.137 38.462 0.00 0.00 0.00 3.85
2865 3067 5.268107 TGCGATAATCATCTATTTGCACG 57.732 39.130 0.00 0.00 29.45 5.34
2959 3161 8.253810 TCACCTAAACATTCTAGAAGACATCAG 58.746 37.037 11.53 4.00 0.00 2.90
2971 3216 2.255406 AGACATCAGTGACTTCTGCCT 58.745 47.619 0.00 0.00 35.63 4.75
3125 3370 7.685481 TCTTGATGGATTTGTAGGTTTCTGTA 58.315 34.615 0.00 0.00 0.00 2.74
3158 3403 1.837439 TGGTCTCATCCAACGGCTATT 59.163 47.619 0.00 0.00 34.24 1.73
3173 3418 2.233431 GGCTATTGTTGTGGGCAATGAA 59.767 45.455 0.00 0.00 37.18 2.57
3252 3497 5.626142 TGTAATAAGTTTCCTGTTCCTGCA 58.374 37.500 0.00 0.00 0.00 4.41
3270 3515 2.483877 TGCATTCGTGCTTTCTACTTGG 59.516 45.455 1.86 0.00 35.49 3.61
3349 3594 8.424918 TCTTAGATCTATTTACAGCTTTCTGGG 58.575 37.037 2.58 0.00 44.54 4.45
3356 3601 1.280457 ACAGCTTTCTGGGGAGGTAG 58.720 55.000 0.00 0.00 44.54 3.18
3358 3603 2.225547 ACAGCTTTCTGGGGAGGTAGTA 60.226 50.000 0.00 0.00 44.54 1.82
3359 3604 3.041946 CAGCTTTCTGGGGAGGTAGTAT 58.958 50.000 0.00 0.00 36.68 2.12
3360 3605 3.456277 CAGCTTTCTGGGGAGGTAGTATT 59.544 47.826 0.00 0.00 36.68 1.89
3361 3606 4.080299 CAGCTTTCTGGGGAGGTAGTATTT 60.080 45.833 0.00 0.00 36.68 1.40
3362 3607 4.080299 AGCTTTCTGGGGAGGTAGTATTTG 60.080 45.833 0.00 0.00 0.00 2.32
3364 3609 5.572885 GCTTTCTGGGGAGGTAGTATTTGAA 60.573 44.000 0.00 0.00 0.00 2.69
3365 3610 6.652205 TTTCTGGGGAGGTAGTATTTGAAT 57.348 37.500 0.00 0.00 0.00 2.57
3366 3611 7.637301 GCTTTCTGGGGAGGTAGTATTTGAATA 60.637 40.741 0.00 0.00 0.00 1.75
3378 3628 8.940952 GGTAGTATTTGAATATGCAAGAGGATC 58.059 37.037 0.00 0.00 0.00 3.36
3547 3797 4.141914 ACCGTGGGTTAATGCTTTGAAAAA 60.142 37.500 0.00 0.00 27.29 1.94
3554 3804 7.711339 TGGGTTAATGCTTTGAAAAATTTACGT 59.289 29.630 0.00 0.00 0.00 3.57
3567 3817 7.958567 TGAAAAATTTACGTATGAGTTTAGGCG 59.041 33.333 0.00 0.00 0.00 5.52
3806 4056 3.008704 AGTTTCCCGCCTTGTAAGTACAT 59.991 43.478 0.00 0.00 35.89 2.29
3857 4109 5.353394 TGAAATAAGACTTGATACGGCCT 57.647 39.130 0.00 0.00 0.00 5.19
3858 4110 5.357257 TGAAATAAGACTTGATACGGCCTC 58.643 41.667 0.00 0.00 0.00 4.70
3859 4111 5.128827 TGAAATAAGACTTGATACGGCCTCT 59.871 40.000 0.00 0.00 0.00 3.69
3860 4112 6.322969 TGAAATAAGACTTGATACGGCCTCTA 59.677 38.462 0.00 0.00 0.00 2.43
3861 4113 5.708877 ATAAGACTTGATACGGCCTCTAC 57.291 43.478 0.00 0.00 0.00 2.59
3863 4115 2.952978 AGACTTGATACGGCCTCTACTG 59.047 50.000 0.00 0.00 0.00 2.74
3864 4116 2.688958 GACTTGATACGGCCTCTACTGT 59.311 50.000 0.00 0.00 0.00 3.55
3865 4117 3.097614 ACTTGATACGGCCTCTACTGTT 58.902 45.455 0.00 0.00 0.00 3.16
3867 4119 4.338682 ACTTGATACGGCCTCTACTGTTAG 59.661 45.833 0.00 0.00 0.00 2.34
3870 4122 5.439721 TGATACGGCCTCTACTGTTAGTTA 58.560 41.667 0.00 0.00 0.00 2.24
3871 4123 6.066690 TGATACGGCCTCTACTGTTAGTTAT 58.933 40.000 0.00 0.00 0.00 1.89
3872 4124 6.548622 TGATACGGCCTCTACTGTTAGTTATT 59.451 38.462 0.00 0.00 0.00 1.40
3873 4125 5.672421 ACGGCCTCTACTGTTAGTTATTT 57.328 39.130 0.00 0.00 0.00 1.40
3874 4126 6.046290 ACGGCCTCTACTGTTAGTTATTTT 57.954 37.500 0.00 0.00 0.00 1.82
4200 4662 4.142902 CCAAACTCGCCTACAAACATGTAG 60.143 45.833 0.00 8.65 40.91 2.74
4205 4667 2.482336 CGCCTACAAACATGTAGCAACA 59.518 45.455 0.00 0.00 40.15 3.33
4327 4789 6.150976 TGACCATCTTCTGCGTTGAAAAATAT 59.849 34.615 0.00 0.00 0.00 1.28
4351 4813 4.567959 AGAAACTTGCATTTGTGCTTTCAC 59.432 37.500 12.82 0.00 43.40 3.18
4370 4832 6.552859 TTCACGCATTTATTTTCTCTGACA 57.447 33.333 0.00 0.00 0.00 3.58
4388 4850 4.253685 TGACAATGCTGCTTAGTTACCTC 58.746 43.478 0.00 0.00 0.00 3.85
4446 4908 1.341209 GCCCTTTGTAAACTTGCAGCT 59.659 47.619 0.00 0.00 0.00 4.24
4675 5138 3.784338 CAGTGATTTGTTTGGCAGTTGT 58.216 40.909 0.00 0.00 0.00 3.32
4741 5212 4.728917 TTCATTTGCCTTTTGATTTGCG 57.271 36.364 0.00 0.00 0.00 4.85
4748 5219 4.122776 TGCCTTTTGATTTGCGCTTTTTA 58.877 34.783 9.73 0.00 0.00 1.52
4850 5322 8.930760 CCATAATTCAAAAGAAAATTTACCGCA 58.069 29.630 0.00 0.00 0.00 5.69
4870 5342 1.003233 GAGCCTGTCCCGCTTTTCT 60.003 57.895 0.00 0.00 36.48 2.52
4873 5345 1.073199 CCTGTCCCGCTTTTCTGGT 59.927 57.895 0.00 0.00 0.00 4.00
4876 5396 1.681264 CTGTCCCGCTTTTCTGGTTTT 59.319 47.619 0.00 0.00 0.00 2.43
5020 5592 9.710900 TTTTCTGAATCGCATGTATATAGACAT 57.289 29.630 7.18 7.18 40.78 3.06
5050 5622 4.500477 GTGTGTTTGTTCACTCATTTCAGC 59.500 41.667 0.00 0.00 38.90 4.26
5222 5805 9.468532 CATCCGTTATCTACACATCCATATATG 57.531 37.037 5.68 5.68 0.00 1.78
5260 5844 4.082026 AGGCAGCATGTGTTCTTTAAATCC 60.082 41.667 0.00 0.00 39.31 3.01
5278 5862 8.656231 TTAAATCCCTCTTACCCCCTTTATAA 57.344 34.615 0.00 0.00 0.00 0.98
5485 6085 7.124147 ACCTATTGCACAAACCTAAAGCATTAT 59.876 33.333 0.00 0.00 34.87 1.28
5559 6159 2.564504 CGGAGCCAGGATCATAGATGAA 59.435 50.000 7.12 0.00 40.69 2.57
5572 6172 1.009997 AGATGAAGGGGCCCAAATGA 58.990 50.000 27.72 4.79 0.00 2.57
5615 6215 4.499696 GGGCCAAATCACAGTAATACATGC 60.500 45.833 4.39 0.00 0.00 4.06
5619 6219 6.473455 GCCAAATCACAGTAATACATGCTTTC 59.527 38.462 0.00 0.00 0.00 2.62
5620 6220 6.974622 CCAAATCACAGTAATACATGCTTTCC 59.025 38.462 0.00 0.00 0.00 3.13
5621 6221 6.699575 AATCACAGTAATACATGCTTTCCC 57.300 37.500 0.00 0.00 0.00 3.97
5788 6390 0.521291 GCCATTGAGCGCACACTAAA 59.479 50.000 11.47 0.00 0.00 1.85
5789 6391 1.068610 GCCATTGAGCGCACACTAAAA 60.069 47.619 11.47 0.00 0.00 1.52
5872 6483 8.707938 TCCCTAGTTAGTTAAAAGCGATTAAC 57.292 34.615 15.44 15.44 43.11 2.01
5890 6501 7.279313 GCGATTAACTTGGATAGGTTTTCACTA 59.721 37.037 0.00 0.00 0.00 2.74
5915 6526 2.576615 ACTCCTTTGTCTTGAAGGTGC 58.423 47.619 3.11 0.00 43.35 5.01
5920 6531 1.165907 TTGTCTTGAAGGTGCAGCCG 61.166 55.000 13.29 0.00 43.70 5.52
5943 6555 6.204108 CCGTTTGATAGGTTTCTGTGTAGTTT 59.796 38.462 0.00 0.00 0.00 2.66
5966 6578 4.946160 TGAAAATATCACCTTGGGACCT 57.054 40.909 0.00 0.00 31.50 3.85
5967 6579 4.855340 TGAAAATATCACCTTGGGACCTC 58.145 43.478 0.00 0.00 31.50 3.85
5968 6580 4.290985 TGAAAATATCACCTTGGGACCTCA 59.709 41.667 0.00 0.00 31.50 3.86
5969 6581 5.044179 TGAAAATATCACCTTGGGACCTCAT 60.044 40.000 0.00 0.00 31.50 2.90
5970 6582 4.713792 AATATCACCTTGGGACCTCATC 57.286 45.455 0.00 0.00 0.00 2.92
5971 6583 2.277008 ATCACCTTGGGACCTCATCT 57.723 50.000 0.00 0.00 0.00 2.90
5972 6584 1.279496 TCACCTTGGGACCTCATCTG 58.721 55.000 0.00 0.00 0.00 2.90
5973 6585 0.254178 CACCTTGGGACCTCATCTGG 59.746 60.000 0.00 0.00 0.00 3.86
5974 6586 0.119155 ACCTTGGGACCTCATCTGGA 59.881 55.000 0.00 0.00 0.00 3.86
5975 6587 1.274650 ACCTTGGGACCTCATCTGGAT 60.275 52.381 0.00 0.00 0.00 3.41
5976 6588 1.419387 CCTTGGGACCTCATCTGGATC 59.581 57.143 0.00 0.00 0.00 3.36
5977 6589 2.406559 CTTGGGACCTCATCTGGATCT 58.593 52.381 0.00 0.00 0.00 2.75
5978 6590 1.798626 TGGGACCTCATCTGGATCTG 58.201 55.000 0.00 0.00 0.00 2.90
5979 6591 1.055040 GGGACCTCATCTGGATCTGG 58.945 60.000 0.00 0.00 0.00 3.86
5980 6592 1.055040 GGACCTCATCTGGATCTGGG 58.945 60.000 0.00 0.00 0.00 4.45
5981 6593 0.396060 GACCTCATCTGGATCTGGGC 59.604 60.000 0.00 0.00 0.00 5.36
5982 6594 1.370437 CCTCATCTGGATCTGGGCG 59.630 63.158 0.00 0.00 0.00 6.13
5983 6595 1.370437 CTCATCTGGATCTGGGCGG 59.630 63.158 0.00 0.00 0.00 6.13
5984 6596 2.109517 CTCATCTGGATCTGGGCGGG 62.110 65.000 0.00 0.00 0.00 6.13
5985 6597 2.040464 ATCTGGATCTGGGCGGGT 60.040 61.111 0.00 0.00 0.00 5.28
5986 6598 2.143419 ATCTGGATCTGGGCGGGTC 61.143 63.158 0.00 0.00 0.00 4.46
5987 6599 4.227134 CTGGATCTGGGCGGGTCG 62.227 72.222 0.00 0.00 0.00 4.79
6001 6613 4.265056 GTCGGCAGTTGGGTGGGT 62.265 66.667 0.00 0.00 0.00 4.51
6002 6614 3.494254 TCGGCAGTTGGGTGGGTT 61.494 61.111 0.00 0.00 0.00 4.11
6003 6615 3.294493 CGGCAGTTGGGTGGGTTG 61.294 66.667 0.00 0.00 0.00 3.77
6004 6616 2.123468 GGCAGTTGGGTGGGTTGT 60.123 61.111 0.00 0.00 0.00 3.32
6005 6617 2.200337 GGCAGTTGGGTGGGTTGTC 61.200 63.158 0.00 0.00 0.00 3.18
6006 6618 2.551912 GCAGTTGGGTGGGTTGTCG 61.552 63.158 0.00 0.00 0.00 4.35
6007 6619 1.896660 CAGTTGGGTGGGTTGTCGG 60.897 63.158 0.00 0.00 0.00 4.79
6008 6620 3.292159 GTTGGGTGGGTTGTCGGC 61.292 66.667 0.00 0.00 0.00 5.54
6009 6621 4.589675 TTGGGTGGGTTGTCGGCC 62.590 66.667 0.00 0.00 0.00 6.13
6015 6627 4.660938 GGGTTGTCGGCCTGGCTT 62.661 66.667 19.68 0.00 0.00 4.35
6016 6628 2.597510 GGTTGTCGGCCTGGCTTT 60.598 61.111 19.68 0.00 0.00 3.51
6017 6629 2.626780 GGTTGTCGGCCTGGCTTTC 61.627 63.158 19.68 9.34 0.00 2.62
6018 6630 2.668212 TTGTCGGCCTGGCTTTCG 60.668 61.111 19.68 13.92 0.00 3.46
6019 6631 4.697756 TGTCGGCCTGGCTTTCGG 62.698 66.667 19.68 3.44 0.00 4.30
6023 6635 4.803908 GGCCTGGCTTTCGGGAGG 62.804 72.222 19.68 0.00 44.90 4.30
6028 6640 4.840005 GGCTTTCGGGAGGCGGAG 62.840 72.222 0.00 0.00 32.25 4.63
6029 6641 4.840005 GCTTTCGGGAGGCGGAGG 62.840 72.222 0.00 0.00 0.00 4.30
6030 6642 3.075005 CTTTCGGGAGGCGGAGGA 61.075 66.667 0.00 0.00 0.00 3.71
6031 6643 3.075005 TTTCGGGAGGCGGAGGAG 61.075 66.667 0.00 0.00 0.00 3.69
6039 6651 4.821589 GGCGGAGGAGCGAGGTTG 62.822 72.222 0.00 0.00 38.18 3.77
6040 6652 4.821589 GCGGAGGAGCGAGGTTGG 62.822 72.222 0.00 0.00 0.00 3.77
6041 6653 4.148825 CGGAGGAGCGAGGTTGGG 62.149 72.222 0.00 0.00 0.00 4.12
6042 6654 2.683933 GGAGGAGCGAGGTTGGGA 60.684 66.667 0.00 0.00 0.00 4.37
6043 6655 2.066999 GGAGGAGCGAGGTTGGGAT 61.067 63.158 0.00 0.00 0.00 3.85
6046 6658 2.670148 GGAGCGAGGTTGGGATGGT 61.670 63.158 0.00 0.00 0.00 3.55
6053 6665 2.679996 GTTGGGATGGTGGGTGGC 60.680 66.667 0.00 0.00 0.00 5.01
6080 6692 3.294493 GGAGCCGGCTTGTTGCAA 61.294 61.111 33.34 0.00 45.15 4.08
6082 6694 2.832661 AGCCGGCTTGTTGCAACA 60.833 55.556 27.96 27.96 45.15 3.33
6083 6695 2.146073 GAGCCGGCTTGTTGCAACAT 62.146 55.000 33.34 15.84 45.15 2.71
6086 6698 3.955775 GGCTTGTTGCAACATGGC 58.044 55.556 38.18 38.18 46.66 4.40
6087 6699 4.754570 GCTTGTTGCAACATGGCA 57.245 50.000 33.44 21.25 43.19 4.92
6088 6700 2.524300 GCTTGTTGCAACATGGCAG 58.476 52.632 33.44 27.56 45.88 4.85
6089 6701 0.032403 GCTTGTTGCAACATGGCAGA 59.968 50.000 33.44 20.40 45.88 4.26
6090 6702 1.337447 GCTTGTTGCAACATGGCAGAT 60.337 47.619 33.44 0.00 45.88 2.90
6092 6704 0.604073 TGTTGCAACATGGCAGATGG 59.396 50.000 27.96 0.00 45.88 3.51
6119 6731 2.742116 GGGCTCGGATGGCTTGGTA 61.742 63.158 0.00 0.00 0.00 3.25
6128 6740 4.764143 GGCTTGGTATGCCCTTGT 57.236 55.556 0.00 0.00 44.32 3.16
6257 6869 1.078426 CCGATTCCTGGCGTTCCTT 60.078 57.895 0.00 0.00 0.00 3.36
6262 6874 1.056660 TTCCTGGCGTTCCTTCTCTT 58.943 50.000 0.00 0.00 0.00 2.85
6263 6875 1.056660 TCCTGGCGTTCCTTCTCTTT 58.943 50.000 0.00 0.00 0.00 2.52
6270 6882 2.548067 GCGTTCCTTCTCTTTGTCCTCA 60.548 50.000 0.00 0.00 0.00 3.86
6273 6885 4.646572 GTTCCTTCTCTTTGTCCTCATGT 58.353 43.478 0.00 0.00 0.00 3.21
6321 6933 4.129380 CGGCATGGATGATCTCAAAACTA 58.871 43.478 0.00 0.00 0.00 2.24
6323 6935 5.240183 CGGCATGGATGATCTCAAAACTATT 59.760 40.000 0.00 0.00 0.00 1.73
6329 6941 5.357878 GGATGATCTCAAAACTATTGTGGCA 59.642 40.000 0.00 0.00 0.00 4.92
6334 6946 7.557358 TGATCTCAAAACTATTGTGGCATATGT 59.443 33.333 4.29 0.00 0.00 2.29
6363 6975 1.680249 GGCAAGCTAGCTAGTTGGCTT 60.680 52.381 31.83 21.71 44.43 4.35
6371 6983 0.669625 GCTAGTTGGCTTCGGTTCGT 60.670 55.000 0.00 0.00 0.00 3.85
6421 7033 1.285280 ATCCCTGTTGGTTCATCCGA 58.715 50.000 0.00 0.00 39.52 4.55
6428 7040 3.040147 GTTGGTTCATCCGACTCTGAA 57.960 47.619 0.00 0.00 44.97 3.02
6436 7048 0.607217 TCCGACTCTGAAGCGGTGTA 60.607 55.000 14.84 0.00 40.68 2.90
6438 7050 0.179161 CGACTCTGAAGCGGTGTAGG 60.179 60.000 0.00 0.00 0.00 3.18
6478 7090 2.432628 CTGAAGGGCGTCGGTGTC 60.433 66.667 0.00 0.00 0.00 3.67
6481 7093 3.222354 GAAGGGCGTCGGTGTCACT 62.222 63.158 2.35 0.00 0.00 3.41
6488 7100 1.595993 CGTCGGTGTCACTCATCCCT 61.596 60.000 2.35 0.00 0.00 4.20
6491 7103 0.174389 CGGTGTCACTCATCCCTCAG 59.826 60.000 2.35 0.00 0.00 3.35
6499 7111 0.264359 CTCATCCCTCAGTCCCCTCT 59.736 60.000 0.00 0.00 0.00 3.69
6501 7113 0.326048 CATCCCTCAGTCCCCTCTGT 60.326 60.000 0.00 0.00 36.85 3.41
6535 7147 0.251916 CCTAGGACATGTTCGGGCAA 59.748 55.000 1.05 0.00 0.00 4.52
6537 7149 1.942657 CTAGGACATGTTCGGGCAATG 59.057 52.381 0.00 0.00 0.00 2.82
6538 7150 0.327924 AGGACATGTTCGGGCAATGA 59.672 50.000 0.00 0.00 0.00 2.57
6549 7161 1.731613 GGCAATGACGTCGTCGACA 60.732 57.895 24.13 9.50 44.12 4.35
6557 7169 1.297672 CGTCGTCGACATCGCATCT 60.298 57.895 24.13 0.00 39.71 2.90
6587 7199 2.740826 GCTTCTTGGTACGCGGCA 60.741 61.111 12.47 0.00 0.00 5.69
6602 7217 2.347490 GCAGTTCGGAGCCTTGGA 59.653 61.111 0.00 0.00 0.00 3.53
6614 7232 2.078452 CCTTGGAGTGTGGTGGGAT 58.922 57.895 0.00 0.00 0.00 3.85
6663 7281 2.168313 TCATCCATGCTTTGTCGAGCTA 59.832 45.455 0.00 0.00 43.11 3.32
6665 7283 1.550524 TCCATGCTTTGTCGAGCTACT 59.449 47.619 0.00 0.00 43.11 2.57
6689 7307 9.606631 ACTGTTGTTGGCATTTATTTCTTTTTA 57.393 25.926 0.00 0.00 0.00 1.52
6691 7309 8.831550 TGTTGTTGGCATTTATTTCTTTTTACC 58.168 29.630 0.00 0.00 0.00 2.85
6704 7322 7.727578 TTTCTTTTTACCTTCTCTTTTGGGT 57.272 32.000 0.00 0.00 36.02 4.51
6720 7338 2.370349 TGGGTTTGATGTGTTGTTCGT 58.630 42.857 0.00 0.00 0.00 3.85
6723 7341 2.356382 GGTTTGATGTGTTGTTCGTCCA 59.644 45.455 0.00 0.00 0.00 4.02
6733 7351 5.464057 TGTGTTGTTCGTCCAAGTAGTTATG 59.536 40.000 0.00 0.00 0.00 1.90
6736 7354 7.169645 GTGTTGTTCGTCCAAGTAGTTATGTTA 59.830 37.037 0.00 0.00 0.00 2.41
6749 7367 5.871396 AGTTATGTTATGATCGGTGGAGT 57.129 39.130 0.00 0.00 0.00 3.85
6751 7369 6.049149 AGTTATGTTATGATCGGTGGAGTTG 58.951 40.000 0.00 0.00 0.00 3.16
6752 7370 2.627945 TGTTATGATCGGTGGAGTTGC 58.372 47.619 0.00 0.00 0.00 4.17
6756 7374 3.627395 ATGATCGGTGGAGTTGCTTTA 57.373 42.857 0.00 0.00 0.00 1.85
6760 7378 5.680619 TGATCGGTGGAGTTGCTTTAATAT 58.319 37.500 0.00 0.00 0.00 1.28
6761 7379 6.822442 TGATCGGTGGAGTTGCTTTAATATA 58.178 36.000 0.00 0.00 0.00 0.86
6763 7381 7.771361 TGATCGGTGGAGTTGCTTTAATATAAA 59.229 33.333 0.00 0.00 0.00 1.40
6764 7382 7.548196 TCGGTGGAGTTGCTTTAATATAAAG 57.452 36.000 5.67 5.67 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 7.585286 ATGTTCATGATTTCAAATTGTTCGG 57.415 32.000 0.00 0.00 0.00 4.30
44 45 9.712305 TGTTTCCAAAAATGTTCAAGAACTTTA 57.288 25.926 13.49 0.00 41.67 1.85
45 46 8.503196 GTGTTTCCAAAAATGTTCAAGAACTTT 58.497 29.630 13.49 10.56 41.67 2.66
46 47 7.148656 CGTGTTTCCAAAAATGTTCAAGAACTT 60.149 33.333 13.49 5.17 41.67 2.66
47 48 6.310224 CGTGTTTCCAAAAATGTTCAAGAACT 59.690 34.615 13.49 0.00 41.67 3.01
48 49 6.309251 TCGTGTTTCCAAAAATGTTCAAGAAC 59.691 34.615 6.01 6.01 41.50 3.01
49 50 6.390721 TCGTGTTTCCAAAAATGTTCAAGAA 58.609 32.000 0.00 0.00 0.00 2.52
50 51 5.955488 TCGTGTTTCCAAAAATGTTCAAGA 58.045 33.333 0.00 0.00 0.00 3.02
51 52 6.639671 TTCGTGTTTCCAAAAATGTTCAAG 57.360 33.333 0.00 0.00 0.00 3.02
52 53 7.976734 ACTATTCGTGTTTCCAAAAATGTTCAA 59.023 29.630 0.00 0.00 0.00 2.69
53 54 7.484975 ACTATTCGTGTTTCCAAAAATGTTCA 58.515 30.769 0.00 0.00 0.00 3.18
54 55 7.924103 ACTATTCGTGTTTCCAAAAATGTTC 57.076 32.000 0.00 0.00 0.00 3.18
55 56 9.620660 GATACTATTCGTGTTTCCAAAAATGTT 57.379 29.630 0.00 0.00 0.00 2.71
56 57 9.010029 AGATACTATTCGTGTTTCCAAAAATGT 57.990 29.630 0.00 0.00 0.00 2.71
67 68 9.530633 GGTCAGAAATTAGATACTATTCGTGTT 57.469 33.333 0.00 0.00 0.00 3.32
68 69 8.692710 TGGTCAGAAATTAGATACTATTCGTGT 58.307 33.333 0.00 0.00 0.00 4.49
69 70 9.529325 TTGGTCAGAAATTAGATACTATTCGTG 57.471 33.333 0.00 0.00 0.00 4.35
91 92 9.065798 CCTTTTTCCATGATTACAAATTTTGGT 57.934 29.630 13.42 2.52 34.12 3.67
92 93 9.282569 TCCTTTTTCCATGATTACAAATTTTGG 57.717 29.630 13.42 0.00 34.12 3.28
95 96 9.844257 TGTTCCTTTTTCCATGATTACAAATTT 57.156 25.926 0.00 0.00 0.00 1.82
98 99 9.844257 AAATGTTCCTTTTTCCATGATTACAAA 57.156 25.926 0.00 0.00 0.00 2.83
99 100 9.487790 GAAATGTTCCTTTTTCCATGATTACAA 57.512 29.630 0.00 0.00 0.00 2.41
100 101 8.646004 TGAAATGTTCCTTTTTCCATGATTACA 58.354 29.630 0.00 0.00 32.14 2.41
101 102 9.657419 ATGAAATGTTCCTTTTTCCATGATTAC 57.343 29.630 0.00 0.00 32.14 1.89
102 103 9.656040 CATGAAATGTTCCTTTTTCCATGATTA 57.344 29.630 0.00 0.00 40.20 1.75
103 104 8.377034 TCATGAAATGTTCCTTTTTCCATGATT 58.623 29.630 0.00 0.00 46.80 2.57
104 105 7.909518 TCATGAAATGTTCCTTTTTCCATGAT 58.090 30.769 0.00 0.00 46.80 2.45
105 106 7.300556 TCATGAAATGTTCCTTTTTCCATGA 57.699 32.000 0.00 0.00 46.80 3.07
106 107 7.966246 TTCATGAAATGTTCCTTTTTCCATG 57.034 32.000 5.45 0.00 46.80 3.66
107 108 9.577222 AATTTCATGAAATGTTCCTTTTTCCAT 57.423 25.926 29.52 9.80 46.80 3.41
108 109 8.977267 AATTTCATGAAATGTTCCTTTTTCCA 57.023 26.923 29.52 1.36 46.80 3.53
109 110 8.506437 GGAATTTCATGAAATGTTCCTTTTTCC 58.494 33.333 29.93 25.26 46.80 3.13
110 111 8.223100 CGGAATTTCATGAAATGTTCCTTTTTC 58.777 33.333 31.78 23.31 46.80 2.29
111 112 7.930865 TCGGAATTTCATGAAATGTTCCTTTTT 59.069 29.630 31.78 18.73 46.80 1.94
112 113 7.441017 TCGGAATTTCATGAAATGTTCCTTTT 58.559 30.769 31.78 19.26 46.80 2.27
113 114 6.991938 TCGGAATTTCATGAAATGTTCCTTT 58.008 32.000 31.78 19.80 46.80 3.11
114 115 6.588719 TCGGAATTTCATGAAATGTTCCTT 57.411 33.333 31.78 20.34 46.80 3.36
115 116 6.015519 TGTTCGGAATTTCATGAAATGTTCCT 60.016 34.615 31.78 20.38 46.80 3.36
116 117 6.155827 TGTTCGGAATTTCATGAAATGTTCC 58.844 36.000 28.61 28.61 46.80 3.62
117 118 7.636259 TTGTTCGGAATTTCATGAAATGTTC 57.364 32.000 29.52 24.04 46.80 3.18
118 119 8.430801 TTTTGTTCGGAATTTCATGAAATGTT 57.569 26.923 29.52 18.37 46.80 2.71
119 120 8.430801 TTTTTGTTCGGAATTTCATGAAATGT 57.569 26.923 29.52 20.25 46.80 2.71
122 123 9.713740 CAAATTTTTGTTCGGAATTTCATGAAA 57.286 25.926 22.52 22.52 32.35 2.69
123 124 9.102757 TCAAATTTTTGTTCGGAATTTCATGAA 57.897 25.926 3.38 3.38 39.18 2.57
124 125 8.654230 TCAAATTTTTGTTCGGAATTTCATGA 57.346 26.923 0.00 0.00 39.18 3.07
131 132 9.703892 TCACAATATCAAATTTTTGTTCGGAAT 57.296 25.926 3.73 0.00 39.18 3.01
132 133 9.534565 TTCACAATATCAAATTTTTGTTCGGAA 57.465 25.926 3.73 3.20 39.18 4.30
133 134 8.973378 GTTCACAATATCAAATTTTTGTTCGGA 58.027 29.630 3.73 0.00 39.18 4.55
134 135 8.759641 TGTTCACAATATCAAATTTTTGTTCGG 58.240 29.630 3.73 0.00 39.18 4.30
205 206 7.148820 CGCGATTACAAATTTGGTCAGAAATTT 60.149 33.333 21.74 0.00 43.26 1.82
229 231 6.464895 TTCATGAAATGTTCCATTTTTCGC 57.535 33.333 5.45 0.00 46.80 4.70
230 232 9.532697 GAATTTCATGAAATGTTCCATTTTTCG 57.467 29.630 29.52 0.00 46.80 3.46
329 332 8.572855 AAGGTGAATTCAAATTTTGGTCAAAA 57.427 26.923 10.35 10.72 43.48 2.44
347 352 9.184523 TCTTCTTTTTATTGTTCAGAAGGTGAA 57.815 29.630 7.25 0.00 43.26 3.18
348 353 8.746052 TCTTCTTTTTATTGTTCAGAAGGTGA 57.254 30.769 7.25 0.00 40.55 4.02
351 398 9.801873 TGTTTCTTCTTTTTATTGTTCAGAAGG 57.198 29.630 7.25 0.00 40.55 3.46
368 415 7.944554 TCAGGAACTCCAAAATATGTTTCTTCT 59.055 33.333 0.00 0.00 34.60 2.85
369 416 8.110860 TCAGGAACTCCAAAATATGTTTCTTC 57.889 34.615 0.00 0.00 34.60 2.87
401 451 9.751542 TCTTTAAACTTTGTTCACAAGTTGAAA 57.248 25.926 10.54 7.52 46.09 2.69
402 452 9.921637 ATCTTTAAACTTTGTTCACAAGTTGAA 57.078 25.926 10.54 0.00 42.26 2.69
438 488 9.847706 TGTTATAGAAAATGCGCAGAAATTAAA 57.152 25.926 18.32 1.06 0.00 1.52
439 489 9.502145 CTGTTATAGAAAATGCGCAGAAATTAA 57.498 29.630 18.32 5.16 0.00 1.40
440 490 8.888716 TCTGTTATAGAAAATGCGCAGAAATTA 58.111 29.630 18.32 6.20 30.84 1.40
441 491 7.761409 TCTGTTATAGAAAATGCGCAGAAATT 58.239 30.769 18.32 7.89 30.84 1.82
442 492 7.320443 TCTGTTATAGAAAATGCGCAGAAAT 57.680 32.000 18.32 1.15 30.84 2.17
443 493 6.735678 TCTGTTATAGAAAATGCGCAGAAA 57.264 33.333 18.32 0.00 30.84 2.52
444 494 6.148645 TGTTCTGTTATAGAAAATGCGCAGAA 59.851 34.615 18.32 5.99 46.48 3.02
445 495 5.641636 TGTTCTGTTATAGAAAATGCGCAGA 59.358 36.000 18.32 0.00 46.48 4.26
446 496 5.868257 TGTTCTGTTATAGAAAATGCGCAG 58.132 37.500 18.32 0.00 46.48 5.18
447 497 5.871465 TGTTCTGTTATAGAAAATGCGCA 57.129 34.783 14.96 14.96 46.48 6.09
448 498 7.740519 AAATGTTCTGTTATAGAAAATGCGC 57.259 32.000 0.00 0.00 46.48 6.09
533 583 9.849166 TCGTTATTTCTTTTTCAAGTTGACTTT 57.151 25.926 4.68 0.00 33.11 2.66
534 584 9.849166 TTCGTTATTTCTTTTTCAAGTTGACTT 57.151 25.926 4.68 0.00 36.45 3.01
535 585 9.285770 GTTCGTTATTTCTTTTTCAAGTTGACT 57.714 29.630 4.68 0.00 0.00 3.41
536 586 9.068008 TGTTCGTTATTTCTTTTTCAAGTTGAC 57.932 29.630 4.68 0.00 0.00 3.18
537 587 9.627395 TTGTTCGTTATTTCTTTTTCAAGTTGA 57.373 25.926 0.08 0.08 0.00 3.18
604 654 9.875691 AGCTGTTTCTTTTTCTTCTTTTATGTT 57.124 25.926 0.00 0.00 0.00 2.71
653 703 5.163591 ACGATTTTGTCTCGTTTCCCTTTTT 60.164 36.000 0.00 0.00 46.49 1.94
654 704 4.337274 ACGATTTTGTCTCGTTTCCCTTTT 59.663 37.500 0.00 0.00 46.49 2.27
655 705 3.881089 ACGATTTTGTCTCGTTTCCCTTT 59.119 39.130 0.00 0.00 46.49 3.11
656 706 3.473625 ACGATTTTGTCTCGTTTCCCTT 58.526 40.909 0.00 0.00 46.49 3.95
657 707 3.121738 ACGATTTTGTCTCGTTTCCCT 57.878 42.857 0.00 0.00 46.49 4.20
664 714 1.798223 TGCCTGAACGATTTTGTCTCG 59.202 47.619 0.00 0.00 41.77 4.04
665 715 2.095718 GGTGCCTGAACGATTTTGTCTC 60.096 50.000 0.00 0.00 0.00 3.36
666 716 1.880027 GGTGCCTGAACGATTTTGTCT 59.120 47.619 0.00 0.00 0.00 3.41
667 717 1.880027 AGGTGCCTGAACGATTTTGTC 59.120 47.619 0.00 0.00 0.00 3.18
668 718 1.981256 AGGTGCCTGAACGATTTTGT 58.019 45.000 0.00 0.00 0.00 2.83
669 719 2.554032 AGAAGGTGCCTGAACGATTTTG 59.446 45.455 0.00 0.00 0.00 2.44
670 720 2.863809 AGAAGGTGCCTGAACGATTTT 58.136 42.857 0.00 0.00 0.00 1.82
671 721 2.568623 AGAAGGTGCCTGAACGATTT 57.431 45.000 0.00 0.00 0.00 2.17
672 722 2.832129 TCTAGAAGGTGCCTGAACGATT 59.168 45.455 0.00 0.00 0.00 3.34
673 723 2.457598 TCTAGAAGGTGCCTGAACGAT 58.542 47.619 0.00 0.00 0.00 3.73
674 724 1.919240 TCTAGAAGGTGCCTGAACGA 58.081 50.000 0.00 0.00 0.00 3.85
675 725 2.611518 CTTCTAGAAGGTGCCTGAACG 58.388 52.381 22.67 0.00 34.87 3.95
676 726 2.027653 AGCTTCTAGAAGGTGCCTGAAC 60.028 50.000 31.08 13.16 46.17 3.18
677 727 2.260822 AGCTTCTAGAAGGTGCCTGAA 58.739 47.619 31.08 0.00 46.17 3.02
678 728 1.944177 AGCTTCTAGAAGGTGCCTGA 58.056 50.000 31.08 0.00 46.17 3.86
685 735 5.805728 TGGTTTTAGGAAGCTTCTAGAAGG 58.194 41.667 29.22 14.22 38.80 3.46
686 736 9.449719 TTTATGGTTTTAGGAAGCTTCTAGAAG 57.550 33.333 25.42 25.42 41.24 2.85
687 737 9.802039 TTTTATGGTTTTAGGAAGCTTCTAGAA 57.198 29.630 25.05 13.87 0.00 2.10
688 738 9.802039 TTTTTATGGTTTTAGGAAGCTTCTAGA 57.198 29.630 25.05 8.70 0.00 2.43
712 762 4.470602 AGAAGGATCAAACTCCGGTTTTT 58.529 39.130 0.00 0.00 42.96 1.94
713 763 4.072839 GAGAAGGATCAAACTCCGGTTTT 58.927 43.478 0.00 0.00 42.96 2.43
714 764 3.072476 TGAGAAGGATCAAACTCCGGTTT 59.928 43.478 0.00 0.00 45.35 3.27
715 765 2.637872 TGAGAAGGATCAAACTCCGGTT 59.362 45.455 0.00 0.00 40.46 4.44
716 766 2.257207 TGAGAAGGATCAAACTCCGGT 58.743 47.619 0.00 0.00 40.46 5.28
717 767 3.334583 TTGAGAAGGATCAAACTCCGG 57.665 47.619 0.00 0.00 40.46 5.14
718 768 5.452777 GTTTTTGAGAAGGATCAAACTCCG 58.547 41.667 1.57 0.00 46.12 4.63
719 769 5.301805 TGGTTTTTGAGAAGGATCAAACTCC 59.698 40.000 1.57 7.74 46.12 3.85
720 770 6.039829 ACTGGTTTTTGAGAAGGATCAAACTC 59.960 38.462 1.57 0.33 46.12 3.01
721 771 5.893824 ACTGGTTTTTGAGAAGGATCAAACT 59.106 36.000 1.57 0.00 46.12 2.66
722 772 6.149129 ACTGGTTTTTGAGAAGGATCAAAC 57.851 37.500 1.57 0.00 46.12 2.93
723 773 9.753674 ATATACTGGTTTTTGAGAAGGATCAAA 57.246 29.630 0.00 0.00 45.12 2.69
724 774 9.177608 CATATACTGGTTTTTGAGAAGGATCAA 57.822 33.333 0.00 0.00 37.41 2.57
725 775 8.328758 ACATATACTGGTTTTTGAGAAGGATCA 58.671 33.333 0.00 0.00 0.00 2.92
726 776 8.616076 CACATATACTGGTTTTTGAGAAGGATC 58.384 37.037 0.00 0.00 0.00 3.36
727 777 8.109634 ACACATATACTGGTTTTTGAGAAGGAT 58.890 33.333 0.00 0.00 0.00 3.24
728 778 7.458397 ACACATATACTGGTTTTTGAGAAGGA 58.542 34.615 0.00 0.00 0.00 3.36
729 779 7.687941 ACACATATACTGGTTTTTGAGAAGG 57.312 36.000 0.00 0.00 0.00 3.46
730 780 9.214957 TGTACACATATACTGGTTTTTGAGAAG 57.785 33.333 0.00 0.00 0.00 2.85
731 781 8.995220 GTGTACACATATACTGGTTTTTGAGAA 58.005 33.333 21.14 0.00 0.00 2.87
732 782 7.329962 CGTGTACACATATACTGGTTTTTGAGA 59.670 37.037 24.98 0.00 0.00 3.27
733 783 7.453034 CGTGTACACATATACTGGTTTTTGAG 58.547 38.462 24.98 0.00 0.00 3.02
734 784 6.128499 GCGTGTACACATATACTGGTTTTTGA 60.128 38.462 24.98 0.00 0.00 2.69
735 785 6.019152 GCGTGTACACATATACTGGTTTTTG 58.981 40.000 24.98 4.63 0.00 2.44
736 786 5.935789 AGCGTGTACACATATACTGGTTTTT 59.064 36.000 24.98 0.00 0.00 1.94
737 787 5.484715 AGCGTGTACACATATACTGGTTTT 58.515 37.500 24.98 0.00 0.00 2.43
738 788 5.080969 AGCGTGTACACATATACTGGTTT 57.919 39.130 24.98 0.00 0.00 3.27
739 789 4.730949 AGCGTGTACACATATACTGGTT 57.269 40.909 24.98 2.06 0.00 3.67
740 790 5.840243 TTAGCGTGTACACATATACTGGT 57.160 39.130 24.98 14.26 0.00 4.00
741 791 6.037726 TGTTTAGCGTGTACACATATACTGG 58.962 40.000 24.98 7.75 0.00 4.00
742 792 6.291637 GCTGTTTAGCGTGTACACATATACTG 60.292 42.308 24.98 21.37 40.67 2.74
743 793 5.747197 GCTGTTTAGCGTGTACACATATACT 59.253 40.000 24.98 15.06 40.67 2.12
744 794 5.959554 GCTGTTTAGCGTGTACACATATAC 58.040 41.667 24.98 19.42 40.67 1.47
759 809 1.468520 CCGGACCATGTTGCTGTTTAG 59.531 52.381 0.00 0.00 0.00 1.85
760 810 1.529226 CCGGACCATGTTGCTGTTTA 58.471 50.000 0.00 0.00 0.00 2.01
761 811 1.805428 GCCGGACCATGTTGCTGTTT 61.805 55.000 5.05 0.00 0.00 2.83
762 812 2.268076 GCCGGACCATGTTGCTGTT 61.268 57.895 5.05 0.00 0.00 3.16
763 813 2.672996 GCCGGACCATGTTGCTGT 60.673 61.111 5.05 0.00 0.00 4.40
764 814 2.672651 TGCCGGACCATGTTGCTG 60.673 61.111 5.05 0.00 0.00 4.41
765 815 2.672996 GTGCCGGACCATGTTGCT 60.673 61.111 5.05 0.00 0.00 3.91
766 816 2.983030 TGTGCCGGACCATGTTGC 60.983 61.111 5.05 0.00 0.00 4.17
767 817 0.321210 TAGTGTGCCGGACCATGTTG 60.321 55.000 5.05 0.00 0.00 3.33
768 818 0.321298 GTAGTGTGCCGGACCATGTT 60.321 55.000 5.05 0.00 0.00 2.71
769 819 1.295423 GTAGTGTGCCGGACCATGT 59.705 57.895 5.05 0.00 0.00 3.21
770 820 1.809619 CGTAGTGTGCCGGACCATG 60.810 63.158 5.05 0.00 0.00 3.66
771 821 1.327690 ATCGTAGTGTGCCGGACCAT 61.328 55.000 5.05 0.00 0.00 3.55
772 822 1.940883 GATCGTAGTGTGCCGGACCA 61.941 60.000 5.05 0.00 0.00 4.02
773 823 1.226888 GATCGTAGTGTGCCGGACC 60.227 63.158 5.05 0.00 0.00 4.46
774 824 1.585521 CGATCGTAGTGTGCCGGAC 60.586 63.158 5.05 0.46 0.00 4.79
775 825 1.588824 AACGATCGTAGTGTGCCGGA 61.589 55.000 23.04 0.00 0.00 5.14
776 826 1.138047 GAACGATCGTAGTGTGCCGG 61.138 60.000 23.04 0.00 0.00 6.13
777 827 1.138047 GGAACGATCGTAGTGTGCCG 61.138 60.000 23.04 0.00 0.00 5.69
778 828 2.662150 GGAACGATCGTAGTGTGCC 58.338 57.895 23.04 12.06 0.00 5.01
799 849 1.116436 GCGTCAAGATGTCGAGATCG 58.884 55.000 16.06 6.57 41.45 3.69
800 850 2.194800 TGCGTCAAGATGTCGAGATC 57.805 50.000 14.43 14.43 30.84 2.75
801 851 2.654749 TTGCGTCAAGATGTCGAGAT 57.345 45.000 0.00 0.00 30.84 2.75
802 852 2.262211 CATTGCGTCAAGATGTCGAGA 58.738 47.619 1.39 0.00 30.84 4.04
803 853 1.995484 ACATTGCGTCAAGATGTCGAG 59.005 47.619 1.39 0.00 30.84 4.04
804 854 1.726248 CACATTGCGTCAAGATGTCGA 59.274 47.619 1.39 0.00 32.01 4.20
805 855 1.787989 GCACATTGCGTCAAGATGTCG 60.788 52.381 0.00 0.00 32.01 4.35
806 856 1.887320 GCACATTGCGTCAAGATGTC 58.113 50.000 0.00 0.00 32.01 3.06
817 867 0.179225 CACTAACGGACGCACATTGC 60.179 55.000 0.00 0.00 40.69 3.56
818 868 1.424403 TCACTAACGGACGCACATTG 58.576 50.000 0.00 0.00 0.00 2.82
819 869 2.157834 TTCACTAACGGACGCACATT 57.842 45.000 0.00 0.00 0.00 2.71
820 870 2.380084 ATTCACTAACGGACGCACAT 57.620 45.000 0.00 0.00 0.00 3.21
821 871 2.063266 GAATTCACTAACGGACGCACA 58.937 47.619 0.00 0.00 0.00 4.57
822 872 1.392510 GGAATTCACTAACGGACGCAC 59.607 52.381 7.93 0.00 0.00 5.34
823 873 1.274167 AGGAATTCACTAACGGACGCA 59.726 47.619 7.93 0.00 0.00 5.24
824 874 1.925185 GAGGAATTCACTAACGGACGC 59.075 52.381 7.93 0.00 0.00 5.19
825 875 3.179830 CTGAGGAATTCACTAACGGACG 58.820 50.000 7.93 0.00 0.00 4.79
826 876 2.930682 GCTGAGGAATTCACTAACGGAC 59.069 50.000 7.93 0.00 0.00 4.79
827 877 2.565391 TGCTGAGGAATTCACTAACGGA 59.435 45.455 7.93 0.00 0.00 4.69
828 878 2.673368 GTGCTGAGGAATTCACTAACGG 59.327 50.000 7.93 0.24 0.00 4.44
829 879 2.345641 CGTGCTGAGGAATTCACTAACG 59.654 50.000 7.93 5.64 0.00 3.18
830 880 2.094417 GCGTGCTGAGGAATTCACTAAC 59.906 50.000 7.93 0.00 0.00 2.34
831 881 2.346803 GCGTGCTGAGGAATTCACTAA 58.653 47.619 7.93 0.00 0.00 2.24
832 882 1.405526 GGCGTGCTGAGGAATTCACTA 60.406 52.381 7.93 0.00 0.00 2.74
833 883 0.674895 GGCGTGCTGAGGAATTCACT 60.675 55.000 7.93 1.88 0.00 3.41
834 884 0.955428 TGGCGTGCTGAGGAATTCAC 60.955 55.000 7.93 1.44 0.00 3.18
835 885 0.955428 GTGGCGTGCTGAGGAATTCA 60.955 55.000 7.93 0.00 0.00 2.57
836 886 1.796796 GTGGCGTGCTGAGGAATTC 59.203 57.895 0.00 0.00 0.00 2.17
837 887 2.034879 CGTGGCGTGCTGAGGAATT 61.035 57.895 0.00 0.00 0.00 2.17
838 888 2.434884 CGTGGCGTGCTGAGGAAT 60.435 61.111 0.00 0.00 0.00 3.01
839 889 4.680237 CCGTGGCGTGCTGAGGAA 62.680 66.667 0.00 0.00 0.00 3.36
943 1001 0.469892 TCCTGTGACTGTGAGGCTGA 60.470 55.000 0.00 0.00 0.00 4.26
1006 1066 2.048503 ACGCGAACGGGAAGAAGG 60.049 61.111 15.93 0.00 46.04 3.46
1039 1099 1.686587 CAGGTTTTGGTTGAGGGTTCC 59.313 52.381 0.00 0.00 0.00 3.62
1177 1237 2.284995 GGAGCTGGGGTGGAGTCT 60.285 66.667 0.00 0.00 0.00 3.24
1187 1247 4.247380 GGAGATGCCCGGAGCTGG 62.247 72.222 0.73 0.00 44.23 4.85
1302 1368 4.299796 GAGGTGGGCTTTGGGGCA 62.300 66.667 0.00 0.00 42.84 5.36
1344 1410 1.647629 GCGCTGCATCTTCATGAGG 59.352 57.895 0.00 0.00 30.57 3.86
1681 1747 9.472361 TGTAAGTAAATACCGAGATAGCATTTC 57.528 33.333 0.00 0.00 0.00 2.17
1707 1779 3.088532 TCGGCTGATTTGGCAACTAATT 58.911 40.909 0.00 0.00 42.20 1.40
1831 1903 7.481798 GCAAATTAGGAGAGAACAATAAACACG 59.518 37.037 0.00 0.00 0.00 4.49
1835 1907 8.109634 AGGAGCAAATTAGGAGAGAACAATAAA 58.890 33.333 0.00 0.00 0.00 1.40
1849 1921 4.855340 TGGAGGGTAAAGGAGCAAATTAG 58.145 43.478 0.00 0.00 0.00 1.73
1866 1938 5.089970 TCACATGAACTACTGATTGGAGG 57.910 43.478 0.00 0.00 0.00 4.30
1882 1954 5.645067 ACACACAAGAATACCATCTCACATG 59.355 40.000 0.00 0.00 0.00 3.21
1991 2063 2.132740 TTCGCAGAAATTTGTGTGGC 57.867 45.000 23.81 7.41 45.90 5.01
2055 2127 9.918630 CCATTATCTTCATGTGGGATTATTTTC 57.081 33.333 0.00 0.00 0.00 2.29
2108 2180 7.324178 AGAAGTACTACTCTAGTTGCCAATTG 58.676 38.462 0.00 0.00 40.14 2.32
2109 2181 7.483580 AGAAGTACTACTCTAGTTGCCAATT 57.516 36.000 0.00 0.00 40.14 2.32
2110 2182 7.998580 GTAGAAGTACTACTCTAGTTGCCAAT 58.001 38.462 4.80 0.00 45.56 3.16
2111 2183 7.388460 GTAGAAGTACTACTCTAGTTGCCAA 57.612 40.000 4.80 0.00 45.56 4.52
2112 2184 6.998968 GTAGAAGTACTACTCTAGTTGCCA 57.001 41.667 4.80 0.00 45.56 4.92
2237 2316 7.619050 TGCATAGCCTTGAAAAATTTATTGGA 58.381 30.769 0.00 0.00 0.00 3.53
2240 2319 9.669887 TTGATGCATAGCCTTGAAAAATTTATT 57.330 25.926 0.00 0.00 0.00 1.40
2252 2331 3.054139 TGGAGTTCTTGATGCATAGCCTT 60.054 43.478 0.00 0.00 0.00 4.35
2371 2545 6.648310 AGAGGCATCTTCATTGACAATATACG 59.352 38.462 0.00 0.00 28.57 3.06
2442 2637 1.476488 TCGATGTCGAGCCATTTCTCA 59.524 47.619 0.21 0.00 44.22 3.27
2454 2649 3.099524 GCTCCATAGCTCGATGTCG 57.900 57.895 0.00 0.00 45.85 4.35
2619 2814 2.004583 TAACTGAGATGGAAACCGCG 57.995 50.000 0.00 0.00 0.00 6.46
2681 2876 6.459985 GCAAATTTTCTTGTTTCCCTTTGCAT 60.460 34.615 10.73 0.00 43.94 3.96
2728 2924 9.454585 CGTTTACCATATATCTAGAACAAACGA 57.545 33.333 17.04 0.00 44.15 3.85
2765 2961 3.461061 CCATGCACCACAGACATACTAG 58.539 50.000 0.00 0.00 0.00 2.57
2787 2983 5.937975 ATTTTTCTGTATGGATGGTTGGG 57.062 39.130 0.00 0.00 0.00 4.12
2821 3023 2.721274 TTCACAACCATTCGGCAATG 57.279 45.000 0.00 3.58 39.45 2.82
2833 3035 9.669353 AATAGATGATTATCGCAAATTCACAAC 57.331 29.630 0.00 0.00 38.38 3.32
2913 3115 5.341617 GTGAGACAGTAAAATAGACCCTCG 58.658 45.833 0.00 0.00 0.00 4.63
2959 3161 8.983724 GTTATTGAGAATATAGGCAGAAGTCAC 58.016 37.037 0.00 0.00 0.00 3.67
3125 3370 5.311385 TGGATGAGACCAATCCATGTCATAT 59.689 40.000 0.98 0.00 39.36 1.78
3158 3403 3.894427 ACATAGTTTCATTGCCCACAACA 59.106 39.130 0.00 0.00 38.99 3.33
3173 3418 5.844601 AGAAGGGAGAGAACCTACATAGTT 58.155 41.667 0.00 0.00 37.35 2.24
3252 3497 5.063880 AGAAACCAAGTAGAAAGCACGAAT 58.936 37.500 0.00 0.00 0.00 3.34
3270 3515 5.506317 GGTGCCATGCAGATACATTAGAAAC 60.506 44.000 0.00 0.00 40.08 2.78
3349 3594 7.389053 CCTCTTGCATATTCAAATACTACCTCC 59.611 40.741 0.00 0.00 0.00 4.30
3356 3601 7.040892 TGCAGATCCTCTTGCATATTCAAATAC 60.041 37.037 3.41 0.00 29.93 1.89
3358 3603 5.831525 TGCAGATCCTCTTGCATATTCAAAT 59.168 36.000 3.41 0.00 29.93 2.32
3359 3604 5.066893 GTGCAGATCCTCTTGCATATTCAAA 59.933 40.000 10.19 0.00 34.72 2.69
3360 3605 4.577693 GTGCAGATCCTCTTGCATATTCAA 59.422 41.667 10.19 0.00 34.72 2.69
3361 3606 4.132336 GTGCAGATCCTCTTGCATATTCA 58.868 43.478 10.19 0.00 34.72 2.57
3362 3607 4.132336 TGTGCAGATCCTCTTGCATATTC 58.868 43.478 10.19 0.00 34.72 1.75
3364 3609 3.851458 TGTGCAGATCCTCTTGCATAT 57.149 42.857 10.19 0.00 34.72 1.78
3365 3610 3.118149 ACATGTGCAGATCCTCTTGCATA 60.118 43.478 10.19 8.32 34.72 3.14
3366 3611 2.298610 CATGTGCAGATCCTCTTGCAT 58.701 47.619 10.19 0.00 34.72 3.96
3378 3628 2.693762 CGCCAAGGGACATGTGCAG 61.694 63.158 19.67 8.08 0.00 4.41
3388 3638 3.118738 ACAACTACTCTATTCGCCAAGGG 60.119 47.826 0.00 0.00 0.00 3.95
3547 3797 6.973229 AAACGCCTAAACTCATACGTAAAT 57.027 33.333 0.00 0.00 32.76 1.40
3591 3841 4.202080 TGAAACATTAGCGTACCGATAGCT 60.202 41.667 0.00 0.00 44.24 3.32
4226 4688 5.482163 TCAAATCACTCTGATACACACCA 57.518 39.130 0.00 0.00 35.76 4.17
4257 4719 2.819608 GAGCTGAAACTTAATGGTGCCA 59.180 45.455 0.00 0.00 0.00 4.92
4351 4813 6.252036 GCATTGTCAGAGAAAATAAATGCG 57.748 37.500 0.00 0.00 39.07 4.73
4388 4850 4.399303 GTGGTCATCAATTCCCTTACTTGG 59.601 45.833 0.00 0.00 0.00 3.61
4446 4908 8.383175 ACCCTGTAATTGAAACTGAGATAAGAA 58.617 33.333 0.00 0.00 0.00 2.52
4532 4995 1.028130 TAGCTGTGCTCTCTCGATGG 58.972 55.000 0.00 0.00 40.44 3.51
4850 5322 2.470938 GAAAAGCGGGACAGGCTCCT 62.471 60.000 0.00 0.00 40.53 3.69
4858 5330 2.882927 AAAAACCAGAAAAGCGGGAC 57.117 45.000 0.00 0.00 35.60 4.46
5020 5592 6.561737 TGAGTGAACAAACACACTAAAACA 57.438 33.333 0.00 0.00 45.54 2.83
5050 5622 9.314321 GATATTTCAATATGGACTACATACGGG 57.686 37.037 0.00 0.00 44.41 5.28
5094 5666 5.105997 GCTAGTTAGTACTCCCTTCGTTCAA 60.106 44.000 0.00 0.00 35.78 2.69
5162 5742 6.549364 AGTCAACCATTACAAGGAAATCACAA 59.451 34.615 0.00 0.00 0.00 3.33
5163 5743 6.068010 AGTCAACCATTACAAGGAAATCACA 58.932 36.000 0.00 0.00 0.00 3.58
5222 5805 2.416431 GCTGCCTCAAATGGATGTCAAC 60.416 50.000 0.00 0.00 0.00 3.18
5260 5844 4.725304 AGGTGTTATAAAGGGGGTAAGAGG 59.275 45.833 0.00 0.00 0.00 3.69
5359 5943 6.535508 AGCAGTATATCGTTCCTTTTTCAGAC 59.464 38.462 0.00 0.00 0.00 3.51
5485 6085 6.239217 AGCCAAATCACATAGAGTACATCA 57.761 37.500 0.00 0.00 0.00 3.07
5559 6159 0.486879 TTTGAGTCATTTGGGCCCCT 59.513 50.000 22.27 7.67 0.00 4.79
5620 6220 5.636903 TCAATCTCTCAGATTTAAGGGGG 57.363 43.478 0.00 0.00 41.90 5.40
5621 6221 6.886459 TGTTTCAATCTCTCAGATTTAAGGGG 59.114 38.462 0.00 0.00 41.90 4.79
5700 6300 8.364894 CCTATACCTGTGTATATACAACTTGCA 58.635 37.037 17.07 9.57 38.82 4.08
5701 6301 8.582437 TCCTATACCTGTGTATATACAACTTGC 58.418 37.037 17.07 5.42 38.82 4.01
5826 6434 7.215085 AGGGAATACATCAGACCGTTTATAAC 58.785 38.462 0.00 0.00 0.00 1.89
5827 6435 7.369551 AGGGAATACATCAGACCGTTTATAA 57.630 36.000 0.00 0.00 0.00 0.98
5846 6457 9.154847 GTTAATCGCTTTTAACTAACTAGGGAA 57.845 33.333 9.78 0.00 38.47 3.97
5872 6483 9.152595 GAGTACTTTAGTGAAAACCTATCCAAG 57.847 37.037 0.00 0.00 0.00 3.61
5915 6526 3.074412 ACAGAAACCTATCAAACGGCTG 58.926 45.455 0.00 0.00 0.00 4.85
5920 6531 7.855904 CACAAACTACACAGAAACCTATCAAAC 59.144 37.037 0.00 0.00 0.00 2.93
5960 6572 1.055040 CCAGATCCAGATGAGGTCCC 58.945 60.000 0.00 0.00 0.00 4.46
5961 6573 1.055040 CCCAGATCCAGATGAGGTCC 58.945 60.000 0.00 0.00 0.00 4.46
5962 6574 0.396060 GCCCAGATCCAGATGAGGTC 59.604 60.000 0.00 0.00 0.00 3.85
5963 6575 1.406065 CGCCCAGATCCAGATGAGGT 61.406 60.000 0.00 0.00 0.00 3.85
5964 6576 1.370437 CGCCCAGATCCAGATGAGG 59.630 63.158 0.00 0.00 0.00 3.86
5965 6577 1.370437 CCGCCCAGATCCAGATGAG 59.630 63.158 0.00 0.00 0.00 2.90
5966 6578 2.142761 CCCGCCCAGATCCAGATGA 61.143 63.158 0.00 0.00 0.00 2.92
5967 6579 2.388890 GACCCGCCCAGATCCAGATG 62.389 65.000 0.00 0.00 0.00 2.90
5968 6580 2.040464 ACCCGCCCAGATCCAGAT 60.040 61.111 0.00 0.00 0.00 2.90
5969 6581 2.764128 GACCCGCCCAGATCCAGA 60.764 66.667 0.00 0.00 0.00 3.86
5970 6582 4.227134 CGACCCGCCCAGATCCAG 62.227 72.222 0.00 0.00 0.00 3.86
5984 6596 3.785122 AACCCACCCAACTGCCGAC 62.785 63.158 0.00 0.00 0.00 4.79
5985 6597 3.494254 AACCCACCCAACTGCCGA 61.494 61.111 0.00 0.00 0.00 5.54
5986 6598 3.294493 CAACCCACCCAACTGCCG 61.294 66.667 0.00 0.00 0.00 5.69
5987 6599 2.123468 ACAACCCACCCAACTGCC 60.123 61.111 0.00 0.00 0.00 4.85
5988 6600 2.551912 CGACAACCCACCCAACTGC 61.552 63.158 0.00 0.00 0.00 4.40
5989 6601 1.896660 CCGACAACCCACCCAACTG 60.897 63.158 0.00 0.00 0.00 3.16
5990 6602 2.513895 CCGACAACCCACCCAACT 59.486 61.111 0.00 0.00 0.00 3.16
5991 6603 3.292159 GCCGACAACCCACCCAAC 61.292 66.667 0.00 0.00 0.00 3.77
5992 6604 4.589675 GGCCGACAACCCACCCAA 62.590 66.667 0.00 0.00 0.00 4.12
5998 6610 4.660938 AAGCCAGGCCGACAACCC 62.661 66.667 8.22 0.00 0.00 4.11
5999 6611 2.597510 AAAGCCAGGCCGACAACC 60.598 61.111 8.22 0.00 0.00 3.77
6000 6612 2.954611 GAAAGCCAGGCCGACAAC 59.045 61.111 8.22 0.00 0.00 3.32
6001 6613 2.668212 CGAAAGCCAGGCCGACAA 60.668 61.111 8.22 0.00 0.00 3.18
6002 6614 4.697756 CCGAAAGCCAGGCCGACA 62.698 66.667 8.22 0.00 0.00 4.35
6006 6618 4.803908 CCTCCCGAAAGCCAGGCC 62.804 72.222 8.22 0.00 0.00 5.19
6011 6623 4.840005 CTCCGCCTCCCGAAAGCC 62.840 72.222 0.00 0.00 40.02 4.35
6012 6624 4.840005 CCTCCGCCTCCCGAAAGC 62.840 72.222 0.00 0.00 40.02 3.51
6013 6625 3.075005 TCCTCCGCCTCCCGAAAG 61.075 66.667 0.00 0.00 40.02 2.62
6014 6626 3.075005 CTCCTCCGCCTCCCGAAA 61.075 66.667 0.00 0.00 40.02 3.46
6022 6634 4.821589 CAACCTCGCTCCTCCGCC 62.822 72.222 0.00 0.00 0.00 6.13
6023 6635 4.821589 CCAACCTCGCTCCTCCGC 62.822 72.222 0.00 0.00 0.00 5.54
6024 6636 4.148825 CCCAACCTCGCTCCTCCG 62.149 72.222 0.00 0.00 0.00 4.63
6025 6637 2.066999 ATCCCAACCTCGCTCCTCC 61.067 63.158 0.00 0.00 0.00 4.30
6026 6638 1.144936 CATCCCAACCTCGCTCCTC 59.855 63.158 0.00 0.00 0.00 3.71
6027 6639 2.370445 CCATCCCAACCTCGCTCCT 61.370 63.158 0.00 0.00 0.00 3.69
6028 6640 2.190578 CCATCCCAACCTCGCTCC 59.809 66.667 0.00 0.00 0.00 4.70
6029 6641 1.450312 CACCATCCCAACCTCGCTC 60.450 63.158 0.00 0.00 0.00 5.03
6030 6642 2.671070 CACCATCCCAACCTCGCT 59.329 61.111 0.00 0.00 0.00 4.93
6031 6643 2.438434 CCACCATCCCAACCTCGC 60.438 66.667 0.00 0.00 0.00 5.03
6032 6644 2.272146 CCCACCATCCCAACCTCG 59.728 66.667 0.00 0.00 0.00 4.63
6033 6645 1.000896 CACCCACCATCCCAACCTC 60.001 63.158 0.00 0.00 0.00 3.85
6034 6646 2.547595 CCACCCACCATCCCAACCT 61.548 63.158 0.00 0.00 0.00 3.50
6035 6647 2.037208 CCACCCACCATCCCAACC 59.963 66.667 0.00 0.00 0.00 3.77
6036 6648 2.679996 GCCACCCACCATCCCAAC 60.680 66.667 0.00 0.00 0.00 3.77
6037 6649 4.358841 CGCCACCCACCATCCCAA 62.359 66.667 0.00 0.00 0.00 4.12
6062 6674 4.577677 TGCAACAAGCCGGCTCCA 62.578 61.111 32.93 18.45 44.83 3.86
6064 6676 2.050077 GTTGCAACAAGCCGGCTC 60.050 61.111 32.93 17.92 44.83 4.70
6065 6677 2.202395 ATGTTGCAACAAGCCGGCT 61.202 52.632 34.06 27.08 43.03 5.52
6072 6684 1.001068 CCATCTGCCATGTTGCAACAA 59.999 47.619 34.06 18.27 43.03 2.83
6075 6687 1.259142 CCCCATCTGCCATGTTGCAA 61.259 55.000 0.00 0.00 41.51 4.08
6080 6692 0.974010 CAAAGCCCCATCTGCCATGT 60.974 55.000 0.00 0.00 0.00 3.21
6082 6694 2.062177 GCAAAGCCCCATCTGCCAT 61.062 57.895 0.00 0.00 0.00 4.40
6083 6695 2.681064 GCAAAGCCCCATCTGCCA 60.681 61.111 0.00 0.00 0.00 4.92
6086 6698 3.142838 CCCGCAAAGCCCCATCTG 61.143 66.667 0.00 0.00 0.00 2.90
6234 6846 3.470888 CGCCAGGAATCGGGACCT 61.471 66.667 0.00 0.00 36.92 3.85
6235 6847 3.325201 AACGCCAGGAATCGGGACC 62.325 63.158 0.00 0.00 0.00 4.46
6236 6848 1.814169 GAACGCCAGGAATCGGGAC 60.814 63.158 0.00 0.00 0.00 4.46
6257 6869 2.493675 CGAGGACATGAGGACAAAGAGA 59.506 50.000 0.00 0.00 0.00 3.10
6262 6874 1.338107 ACACGAGGACATGAGGACAA 58.662 50.000 0.00 0.00 0.00 3.18
6263 6875 1.000843 CAACACGAGGACATGAGGACA 59.999 52.381 0.00 0.00 0.00 4.02
6270 6882 0.460284 GATCGCCAACACGAGGACAT 60.460 55.000 0.00 0.00 46.69 3.06
6273 6885 1.248101 TGAGATCGCCAACACGAGGA 61.248 55.000 0.00 0.00 46.69 3.71
6321 6933 0.746063 CCGCCAACATATGCCACAAT 59.254 50.000 1.58 0.00 0.00 2.71
6323 6935 1.752310 CCCGCCAACATATGCCACA 60.752 57.895 1.58 0.00 0.00 4.17
6329 6941 1.000270 TTGCCACCCGCCAACATAT 60.000 52.632 0.00 0.00 36.24 1.78
6334 6946 3.918253 CTAGCTTGCCACCCGCCAA 62.918 63.158 0.00 0.00 36.24 4.52
6363 6975 2.985282 ACTACCCGCACGAACCGA 60.985 61.111 0.00 0.00 0.00 4.69
6371 6983 1.228003 CCAAACACCACTACCCGCA 60.228 57.895 0.00 0.00 0.00 5.69
6410 7022 1.066858 GCTTCAGAGTCGGATGAACCA 60.067 52.381 9.81 0.00 38.90 3.67
6421 7033 0.900647 AGCCTACACCGCTTCAGAGT 60.901 55.000 0.00 0.00 30.57 3.24
6478 7090 0.326048 AGGGGACTGAGGGATGAGTG 60.326 60.000 0.00 0.00 41.13 3.51
6481 7093 0.031716 CAGAGGGGACTGAGGGATGA 60.032 60.000 0.00 0.00 44.43 2.92
6488 7100 0.758734 CAACACACAGAGGGGACTGA 59.241 55.000 0.00 0.00 44.43 3.41
6491 7103 1.073199 CCCAACACACAGAGGGGAC 59.927 63.158 0.00 0.00 41.49 4.46
6499 7111 4.688770 GGTTTCCCCCAACACACA 57.311 55.556 0.00 0.00 0.00 3.72
6535 7147 1.582937 GCGATGTCGACGACGTCAT 60.583 57.895 36.25 21.07 45.67 3.06
6537 7149 1.521749 GATGCGATGTCGACGACGTC 61.522 60.000 31.29 31.29 42.99 4.34
6538 7150 1.582937 GATGCGATGTCGACGACGT 60.583 57.895 22.13 22.13 43.02 4.34
6549 7161 2.114616 ACCTCCAAGAAGAGATGCGAT 58.885 47.619 0.00 0.00 35.82 4.58
6557 7169 2.224621 CCAAGAAGCACCTCCAAGAAGA 60.225 50.000 0.00 0.00 0.00 2.87
6587 7199 1.122019 ACACTCCAAGGCTCCGAACT 61.122 55.000 0.00 0.00 0.00 3.01
6600 7215 1.561542 AGATTCATCCCACCACACTCC 59.438 52.381 0.00 0.00 0.00 3.85
6601 7216 2.237143 TCAGATTCATCCCACCACACTC 59.763 50.000 0.00 0.00 0.00 3.51
6602 7217 2.269023 TCAGATTCATCCCACCACACT 58.731 47.619 0.00 0.00 0.00 3.55
6614 7232 0.179111 CGCTACGCCCTTCAGATTCA 60.179 55.000 0.00 0.00 0.00 2.57
6640 7258 2.286831 GCTCGACAAAGCATGGATGATG 60.287 50.000 0.00 0.00 42.05 3.07
6663 7281 8.504812 AAAAAGAAATAAATGCCAACAACAGT 57.495 26.923 0.00 0.00 0.00 3.55
6665 7283 8.831550 GGTAAAAAGAAATAAATGCCAACAACA 58.168 29.630 0.00 0.00 0.00 3.33
6689 7307 4.342092 CACATCAAACCCAAAAGAGAAGGT 59.658 41.667 0.00 0.00 0.00 3.50
6691 7309 5.520376 ACACATCAAACCCAAAAGAGAAG 57.480 39.130 0.00 0.00 0.00 2.85
6704 7322 3.692101 ACTTGGACGAACAACACATCAAA 59.308 39.130 0.00 0.00 0.00 2.69
6720 7338 7.207383 CACCGATCATAACATAACTACTTGGA 58.793 38.462 0.00 0.00 0.00 3.53
6723 7341 7.069578 ACTCCACCGATCATAACATAACTACTT 59.930 37.037 0.00 0.00 0.00 2.24
6733 7351 2.906354 AGCAACTCCACCGATCATAAC 58.094 47.619 0.00 0.00 0.00 1.89
6736 7354 2.496899 AAAGCAACTCCACCGATCAT 57.503 45.000 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.