Multiple sequence alignment - TraesCS2B01G208600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G208600 chr2B 100.000 2942 0 0 1 2942 189749943 189747002 0.000000e+00 5433
1 TraesCS2B01G208600 chr2B 86.000 300 30 7 11 300 449077582 449077879 7.920000e-81 311
2 TraesCS2B01G208600 chr2D 87.012 2433 145 55 530 2887 133276610 133274274 0.000000e+00 2584
3 TraesCS2B01G208600 chr2D 95.133 226 10 1 308 533 133282325 133282101 3.610000e-94 355
4 TraesCS2B01G208600 chr2A 86.194 804 51 24 1154 1956 141285872 141285128 0.000000e+00 815
5 TraesCS2B01G208600 chr2A 94.043 470 22 4 308 772 141286706 141286238 0.000000e+00 708
6 TraesCS2B01G208600 chr2A 91.897 506 26 5 838 1342 141286238 141285747 0.000000e+00 693
7 TraesCS2B01G208600 chr2A 86.054 294 27 8 31 315 59579050 59578762 1.320000e-78 303
8 TraesCS2B01G208600 chr2A 85.965 171 18 3 1945 2110 141285104 141284935 8.380000e-41 178
9 TraesCS2B01G208600 chr3D 88.387 310 28 6 1 306 289437237 289436932 1.670000e-97 366
10 TraesCS2B01G208600 chr3D 83.226 310 40 9 31 331 69171652 69171346 1.040000e-69 274
11 TraesCS2B01G208600 chr3B 86.755 302 35 3 1 300 611190919 611190621 6.080000e-87 331
12 TraesCS2B01G208600 chr5B 85.220 318 39 6 1 315 593306178 593305866 1.320000e-83 320
13 TraesCS2B01G208600 chr5B 84.142 309 41 4 1 306 504463094 504462791 2.870000e-75 292
14 TraesCS2B01G208600 chr5B 85.765 281 31 5 31 302 280681509 280681789 3.710000e-74 289
15 TraesCS2B01G208600 chr7B 85.274 292 38 5 11 300 533228237 533228525 2.220000e-76 296


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G208600 chr2B 189747002 189749943 2941 True 5433.0 5433 100.00000 1 2942 1 chr2B.!!$R1 2941
1 TraesCS2B01G208600 chr2D 133274274 133276610 2336 True 2584.0 2584 87.01200 530 2887 1 chr2D.!!$R1 2357
2 TraesCS2B01G208600 chr2A 141284935 141286706 1771 True 598.5 815 89.52475 308 2110 4 chr2A.!!$R2 1802

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
152 153 0.034863 ATGTCCAATAAACGCCCCGT 60.035 50.0 0.00 0.00 43.97 5.28 F
289 290 0.111639 GTGGGTTTGAGTTAGGGGCA 59.888 55.0 0.00 0.00 0.00 5.36 F
291 292 0.111639 GGGTTTGAGTTAGGGGCACA 59.888 55.0 0.00 0.00 0.00 4.57 F
873 885 0.463620 TCCCATGTTGATGCGATCGA 59.536 50.0 21.57 4.34 0.00 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1629 1693 0.321671 ATGACTTACTGGCGCACTGT 59.678 50.0 10.83 11.42 35.29 3.55 R
1711 1775 0.467384 ATCTTCCTCCGGTCATGCAG 59.533 55.0 0.00 0.00 0.00 4.41 R
1924 1991 0.694771 AGTCATGGCTCTGCAAAGGA 59.305 50.0 0.00 0.00 0.00 3.36 R
2402 2529 0.248054 GGAACAGCACACAACACACG 60.248 55.0 0.00 0.00 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 5.748670 TTTCTTTTTACTATTTGGGGCCC 57.251 39.130 18.17 18.17 0.00 5.80
39 40 4.405756 TCTTTTTACTATTTGGGGCCCA 57.594 40.909 24.76 24.76 0.00 5.36
40 41 4.090819 TCTTTTTACTATTTGGGGCCCAC 58.909 43.478 28.84 14.10 30.78 4.61
41 42 3.544698 TTTTACTATTTGGGGCCCACA 57.455 42.857 28.84 21.73 30.78 4.17
42 43 3.767309 TTTACTATTTGGGGCCCACAT 57.233 42.857 28.84 27.47 30.78 3.21
43 44 2.746279 TACTATTTGGGGCCCACATG 57.254 50.000 30.25 21.92 30.78 3.21
44 45 0.709992 ACTATTTGGGGCCCACATGT 59.290 50.000 30.25 22.48 30.78 3.21
45 46 1.926665 ACTATTTGGGGCCCACATGTA 59.073 47.619 30.25 17.14 30.78 2.29
46 47 2.313342 ACTATTTGGGGCCCACATGTAA 59.687 45.455 30.25 20.29 30.78 2.41
47 48 1.864669 ATTTGGGGCCCACATGTAAG 58.135 50.000 28.84 0.00 30.78 2.34
48 49 0.485099 TTTGGGGCCCACATGTAAGT 59.515 50.000 28.84 0.00 30.78 2.24
49 50 0.251564 TTGGGGCCCACATGTAAGTG 60.252 55.000 28.84 0.00 39.21 3.16
50 51 2.052104 GGGGCCCACATGTAAGTGC 61.052 63.158 26.86 0.00 38.18 4.40
51 52 2.406616 GGGCCCACATGTAAGTGCG 61.407 63.158 19.95 0.00 38.18 5.34
52 53 1.674322 GGCCCACATGTAAGTGCGT 60.674 57.895 0.00 0.00 38.18 5.24
53 54 1.501741 GCCCACATGTAAGTGCGTG 59.498 57.895 0.00 0.00 38.18 5.34
54 55 0.953471 GCCCACATGTAAGTGCGTGA 60.953 55.000 0.00 0.00 38.18 4.35
55 56 1.078709 CCCACATGTAAGTGCGTGAG 58.921 55.000 0.00 0.00 38.18 3.51
56 57 1.337728 CCCACATGTAAGTGCGTGAGA 60.338 52.381 0.00 0.00 38.18 3.27
57 58 1.995484 CCACATGTAAGTGCGTGAGAG 59.005 52.381 0.00 0.00 38.18 3.20
58 59 2.352715 CCACATGTAAGTGCGTGAGAGA 60.353 50.000 0.00 0.00 38.18 3.10
59 60 2.919859 CACATGTAAGTGCGTGAGAGAG 59.080 50.000 0.00 0.00 32.04 3.20
60 61 2.820197 ACATGTAAGTGCGTGAGAGAGA 59.180 45.455 0.00 0.00 0.00 3.10
61 62 3.119673 ACATGTAAGTGCGTGAGAGAGAG 60.120 47.826 0.00 0.00 0.00 3.20
62 63 1.813178 TGTAAGTGCGTGAGAGAGAGG 59.187 52.381 0.00 0.00 0.00 3.69
63 64 1.133407 GTAAGTGCGTGAGAGAGAGGG 59.867 57.143 0.00 0.00 0.00 4.30
64 65 0.540830 AAGTGCGTGAGAGAGAGGGT 60.541 55.000 0.00 0.00 0.00 4.34
65 66 1.214062 GTGCGTGAGAGAGAGGGTG 59.786 63.158 0.00 0.00 0.00 4.61
66 67 1.074951 TGCGTGAGAGAGAGGGTGA 59.925 57.895 0.00 0.00 0.00 4.02
67 68 0.962855 TGCGTGAGAGAGAGGGTGAG 60.963 60.000 0.00 0.00 0.00 3.51
68 69 0.678366 GCGTGAGAGAGAGGGTGAGA 60.678 60.000 0.00 0.00 0.00 3.27
69 70 1.378531 CGTGAGAGAGAGGGTGAGAG 58.621 60.000 0.00 0.00 0.00 3.20
70 71 1.065782 CGTGAGAGAGAGGGTGAGAGA 60.066 57.143 0.00 0.00 0.00 3.10
71 72 2.616765 CGTGAGAGAGAGGGTGAGAGAA 60.617 54.545 0.00 0.00 0.00 2.87
72 73 3.426615 GTGAGAGAGAGGGTGAGAGAAA 58.573 50.000 0.00 0.00 0.00 2.52
73 74 3.443681 GTGAGAGAGAGGGTGAGAGAAAG 59.556 52.174 0.00 0.00 0.00 2.62
74 75 3.332187 TGAGAGAGAGGGTGAGAGAAAGA 59.668 47.826 0.00 0.00 0.00 2.52
75 76 3.947834 GAGAGAGAGGGTGAGAGAAAGAG 59.052 52.174 0.00 0.00 0.00 2.85
76 77 3.333680 AGAGAGAGGGTGAGAGAAAGAGT 59.666 47.826 0.00 0.00 0.00 3.24
77 78 4.086457 GAGAGAGGGTGAGAGAAAGAGTT 58.914 47.826 0.00 0.00 0.00 3.01
78 79 4.488770 AGAGAGGGTGAGAGAAAGAGTTT 58.511 43.478 0.00 0.00 0.00 2.66
79 80 4.904853 AGAGAGGGTGAGAGAAAGAGTTTT 59.095 41.667 0.00 0.00 0.00 2.43
80 81 5.368230 AGAGAGGGTGAGAGAAAGAGTTTTT 59.632 40.000 0.00 0.00 0.00 1.94
101 102 7.847711 TTTTTATTTTTCTGAGTGGATCCCA 57.152 32.000 9.90 0.00 0.00 4.37
113 114 3.627395 TGGATCCCACATGTAAGTGAC 57.373 47.619 9.90 0.00 42.05 3.67
114 115 2.909662 TGGATCCCACATGTAAGTGACA 59.090 45.455 9.90 0.00 42.05 3.58
115 116 3.270877 GGATCCCACATGTAAGTGACAC 58.729 50.000 0.00 0.00 42.17 3.67
116 117 3.307410 GGATCCCACATGTAAGTGACACA 60.307 47.826 8.59 0.00 42.17 3.72
117 118 4.517285 GATCCCACATGTAAGTGACACAT 58.483 43.478 8.59 0.00 42.17 3.21
123 124 2.472695 TGTAAGTGACACATGGAGGC 57.527 50.000 8.59 0.00 31.20 4.70
124 125 1.696884 TGTAAGTGACACATGGAGGCA 59.303 47.619 8.59 0.00 31.20 4.75
125 126 2.289631 TGTAAGTGACACATGGAGGCAG 60.290 50.000 8.59 0.00 31.20 4.85
126 127 0.037303 AAGTGACACATGGAGGCAGG 59.963 55.000 8.59 0.00 0.00 4.85
127 128 1.377725 GTGACACATGGAGGCAGGG 60.378 63.158 0.00 0.00 0.00 4.45
128 129 2.273449 GACACATGGAGGCAGGGG 59.727 66.667 0.00 0.00 0.00 4.79
129 130 4.052518 ACACATGGAGGCAGGGGC 62.053 66.667 0.00 0.00 40.13 5.80
130 131 4.051167 CACATGGAGGCAGGGGCA 62.051 66.667 0.00 0.00 43.71 5.36
131 132 3.267233 ACATGGAGGCAGGGGCAA 61.267 61.111 0.00 0.00 43.71 4.52
132 133 2.037687 CATGGAGGCAGGGGCAAA 59.962 61.111 0.00 0.00 43.71 3.68
133 134 1.610086 CATGGAGGCAGGGGCAAAA 60.610 57.895 0.00 0.00 43.71 2.44
134 135 0.979187 CATGGAGGCAGGGGCAAAAT 60.979 55.000 0.00 0.00 43.71 1.82
135 136 0.979187 ATGGAGGCAGGGGCAAAATG 60.979 55.000 0.00 0.00 43.71 2.32
136 137 1.610379 GGAGGCAGGGGCAAAATGT 60.610 57.895 0.00 0.00 43.71 2.71
137 138 1.607801 GGAGGCAGGGGCAAAATGTC 61.608 60.000 0.00 0.00 43.71 3.06
138 139 1.607801 GAGGCAGGGGCAAAATGTCC 61.608 60.000 0.00 0.00 42.67 4.02
139 140 1.912763 GGCAGGGGCAAAATGTCCA 60.913 57.895 3.09 0.00 45.98 4.02
140 141 1.479368 GGCAGGGGCAAAATGTCCAA 61.479 55.000 3.09 0.00 45.98 3.53
141 142 0.614812 GCAGGGGCAAAATGTCCAAT 59.385 50.000 3.09 0.00 45.98 3.16
142 143 1.830477 GCAGGGGCAAAATGTCCAATA 59.170 47.619 3.09 0.00 45.98 1.90
143 144 2.235898 GCAGGGGCAAAATGTCCAATAA 59.764 45.455 3.09 0.00 45.98 1.40
144 145 3.307339 GCAGGGGCAAAATGTCCAATAAA 60.307 43.478 3.09 0.00 45.98 1.40
145 146 4.252878 CAGGGGCAAAATGTCCAATAAAC 58.747 43.478 3.09 0.00 45.98 2.01
146 147 3.056179 AGGGGCAAAATGTCCAATAAACG 60.056 43.478 3.09 0.00 45.98 3.60
147 148 2.670905 GGGCAAAATGTCCAATAAACGC 59.329 45.455 0.00 0.00 42.98 4.84
148 149 2.670905 GGCAAAATGTCCAATAAACGCC 59.329 45.455 0.00 0.00 0.00 5.68
149 150 2.670905 GCAAAATGTCCAATAAACGCCC 59.329 45.455 0.00 0.00 0.00 6.13
150 151 3.258228 CAAAATGTCCAATAAACGCCCC 58.742 45.455 0.00 0.00 0.00 5.80
151 152 1.099689 AATGTCCAATAAACGCCCCG 58.900 50.000 0.00 0.00 0.00 5.73
152 153 0.034863 ATGTCCAATAAACGCCCCGT 60.035 50.000 0.00 0.00 43.97 5.28
161 162 3.632080 ACGCCCCGTTGATGGTCA 61.632 61.111 0.00 0.00 36.35 4.02
162 163 2.359354 CGCCCCGTTGATGGTCAA 60.359 61.111 0.00 0.00 33.32 3.18
163 164 1.969064 CGCCCCGTTGATGGTCAAA 60.969 57.895 0.00 0.00 38.22 2.69
164 165 1.584495 GCCCCGTTGATGGTCAAAC 59.416 57.895 0.00 0.00 38.22 2.93
165 166 1.873270 GCCCCGTTGATGGTCAAACC 61.873 60.000 0.00 0.00 38.22 3.27
166 167 1.248101 CCCCGTTGATGGTCAAACCC 61.248 60.000 0.00 0.00 38.22 4.11
167 168 1.248101 CCCGTTGATGGTCAAACCCC 61.248 60.000 0.00 0.00 38.22 4.95
168 169 0.251165 CCGTTGATGGTCAAACCCCT 60.251 55.000 0.00 0.00 38.22 4.79
169 170 1.616159 CGTTGATGGTCAAACCCCTT 58.384 50.000 0.00 0.00 38.22 3.95
170 171 1.960689 CGTTGATGGTCAAACCCCTTT 59.039 47.619 0.00 0.00 38.22 3.11
171 172 2.288152 CGTTGATGGTCAAACCCCTTTG 60.288 50.000 0.00 0.00 38.22 2.77
172 173 2.962421 GTTGATGGTCAAACCCCTTTGA 59.038 45.455 0.00 0.00 42.93 2.69
178 179 2.358322 TCAAACCCCTTTGACTGGAC 57.642 50.000 0.00 0.00 40.76 4.02
179 180 1.566703 TCAAACCCCTTTGACTGGACA 59.433 47.619 0.00 0.00 40.76 4.02
180 181 1.956477 CAAACCCCTTTGACTGGACAG 59.044 52.381 0.00 0.00 39.43 3.51
181 182 1.518367 AACCCCTTTGACTGGACAGA 58.482 50.000 6.29 0.00 0.00 3.41
182 183 1.518367 ACCCCTTTGACTGGACAGAA 58.482 50.000 6.29 0.00 0.00 3.02
183 184 1.850345 ACCCCTTTGACTGGACAGAAA 59.150 47.619 6.29 0.00 0.00 2.52
184 185 2.230660 CCCCTTTGACTGGACAGAAAC 58.769 52.381 6.29 0.00 0.00 2.78
185 186 2.422803 CCCCTTTGACTGGACAGAAACA 60.423 50.000 6.29 1.07 0.00 2.83
186 187 2.880890 CCCTTTGACTGGACAGAAACAG 59.119 50.000 6.29 0.00 40.48 3.16
187 188 3.433598 CCCTTTGACTGGACAGAAACAGA 60.434 47.826 6.29 0.00 38.09 3.41
188 189 4.199310 CCTTTGACTGGACAGAAACAGAA 58.801 43.478 6.29 1.85 38.09 3.02
189 190 4.035675 CCTTTGACTGGACAGAAACAGAAC 59.964 45.833 6.29 0.00 38.09 3.01
190 191 2.821546 TGACTGGACAGAAACAGAACG 58.178 47.619 6.29 0.00 38.09 3.95
191 192 2.135933 GACTGGACAGAAACAGAACGG 58.864 52.381 6.29 0.00 38.09 4.44
192 193 1.760613 ACTGGACAGAAACAGAACGGA 59.239 47.619 6.29 0.00 38.09 4.69
193 194 2.169769 ACTGGACAGAAACAGAACGGAA 59.830 45.455 6.29 0.00 38.09 4.30
194 195 2.802816 CTGGACAGAAACAGAACGGAAG 59.197 50.000 0.00 0.00 36.86 3.46
195 196 2.143925 GGACAGAAACAGAACGGAAGG 58.856 52.381 0.00 0.00 0.00 3.46
196 197 2.143925 GACAGAAACAGAACGGAAGGG 58.856 52.381 0.00 0.00 0.00 3.95
197 198 0.875059 CAGAAACAGAACGGAAGGGC 59.125 55.000 0.00 0.00 0.00 5.19
198 199 0.472471 AGAAACAGAACGGAAGGGCA 59.528 50.000 0.00 0.00 0.00 5.36
199 200 1.073923 AGAAACAGAACGGAAGGGCAT 59.926 47.619 0.00 0.00 0.00 4.40
200 201 1.886542 GAAACAGAACGGAAGGGCATT 59.113 47.619 0.00 0.00 0.00 3.56
201 202 1.995376 AACAGAACGGAAGGGCATTT 58.005 45.000 0.00 0.00 0.00 2.32
202 203 1.534729 ACAGAACGGAAGGGCATTTC 58.465 50.000 0.00 0.00 0.00 2.17
203 204 1.073923 ACAGAACGGAAGGGCATTTCT 59.926 47.619 0.00 0.00 0.00 2.52
204 205 1.470098 CAGAACGGAAGGGCATTTCTG 59.530 52.381 7.91 7.91 37.81 3.02
205 206 1.073923 AGAACGGAAGGGCATTTCTGT 59.926 47.619 8.99 8.99 46.02 3.41
206 207 2.304761 AGAACGGAAGGGCATTTCTGTA 59.695 45.455 13.63 0.00 43.93 2.74
207 208 2.871096 ACGGAAGGGCATTTCTGTAA 57.129 45.000 12.15 0.00 43.13 2.41
208 209 2.711542 ACGGAAGGGCATTTCTGTAAG 58.288 47.619 12.15 0.00 43.13 2.34
209 210 2.017049 CGGAAGGGCATTTCTGTAAGG 58.983 52.381 0.00 0.00 0.00 2.69
210 211 2.618045 CGGAAGGGCATTTCTGTAAGGT 60.618 50.000 0.00 0.00 0.00 3.50
211 212 3.017442 GGAAGGGCATTTCTGTAAGGTC 58.983 50.000 0.00 0.00 0.00 3.85
212 213 3.561313 GGAAGGGCATTTCTGTAAGGTCA 60.561 47.826 0.00 0.00 0.00 4.02
213 214 3.073274 AGGGCATTTCTGTAAGGTCAC 57.927 47.619 0.00 0.00 0.00 3.67
214 215 2.644798 AGGGCATTTCTGTAAGGTCACT 59.355 45.455 0.00 0.00 0.00 3.41
215 216 3.074538 AGGGCATTTCTGTAAGGTCACTT 59.925 43.478 0.00 0.00 40.74 3.16
216 217 4.288626 AGGGCATTTCTGTAAGGTCACTTA 59.711 41.667 0.00 0.00 38.14 2.24
217 218 5.007682 GGGCATTTCTGTAAGGTCACTTAA 58.992 41.667 0.00 0.00 40.66 1.85
218 219 5.106277 GGGCATTTCTGTAAGGTCACTTAAC 60.106 44.000 0.00 0.00 40.66 2.01
219 220 5.390567 GGCATTTCTGTAAGGTCACTTAACG 60.391 44.000 0.00 0.00 40.66 3.18
220 221 5.407387 GCATTTCTGTAAGGTCACTTAACGA 59.593 40.000 0.00 0.00 40.66 3.85
221 222 6.401153 GCATTTCTGTAAGGTCACTTAACGAG 60.401 42.308 0.00 0.00 40.66 4.18
222 223 6.395426 TTTCTGTAAGGTCACTTAACGAGA 57.605 37.500 0.00 0.00 40.66 4.04
223 224 5.624344 TCTGTAAGGTCACTTAACGAGAG 57.376 43.478 0.00 0.00 40.66 3.20
224 225 5.311265 TCTGTAAGGTCACTTAACGAGAGA 58.689 41.667 0.00 0.00 40.66 3.10
225 226 5.411977 TCTGTAAGGTCACTTAACGAGAGAG 59.588 44.000 0.00 0.00 40.66 3.20
226 227 4.458295 TGTAAGGTCACTTAACGAGAGAGG 59.542 45.833 0.00 0.00 40.66 3.69
227 228 2.448453 AGGTCACTTAACGAGAGAGGG 58.552 52.381 0.00 0.00 0.00 4.30
228 229 1.477295 GGTCACTTAACGAGAGAGGGG 59.523 57.143 0.00 0.00 0.00 4.79
229 230 1.135053 GTCACTTAACGAGAGAGGGGC 60.135 57.143 0.00 0.00 0.00 5.80
230 231 0.895530 CACTTAACGAGAGAGGGGCA 59.104 55.000 0.00 0.00 0.00 5.36
231 232 1.275291 CACTTAACGAGAGAGGGGCAA 59.725 52.381 0.00 0.00 0.00 4.52
232 233 1.975680 ACTTAACGAGAGAGGGGCAAA 59.024 47.619 0.00 0.00 0.00 3.68
233 234 2.572104 ACTTAACGAGAGAGGGGCAAAT 59.428 45.455 0.00 0.00 0.00 2.32
234 235 3.009143 ACTTAACGAGAGAGGGGCAAATT 59.991 43.478 0.00 0.00 0.00 1.82
235 236 2.586648 AACGAGAGAGGGGCAAATTT 57.413 45.000 0.00 0.00 0.00 1.82
236 237 1.826385 ACGAGAGAGGGGCAAATTTG 58.174 50.000 14.03 14.03 0.00 2.32
237 238 1.351017 ACGAGAGAGGGGCAAATTTGA 59.649 47.619 22.31 0.00 0.00 2.69
238 239 2.012673 CGAGAGAGGGGCAAATTTGAG 58.987 52.381 22.31 0.00 0.00 3.02
239 240 2.616510 CGAGAGAGGGGCAAATTTGAGT 60.617 50.000 22.31 2.19 0.00 3.41
240 241 3.369471 CGAGAGAGGGGCAAATTTGAGTA 60.369 47.826 22.31 0.00 0.00 2.59
241 242 4.684485 CGAGAGAGGGGCAAATTTGAGTAT 60.684 45.833 22.31 4.34 0.00 2.12
242 243 4.530875 AGAGAGGGGCAAATTTGAGTATG 58.469 43.478 22.31 0.00 0.00 2.39
243 244 3.026694 AGAGGGGCAAATTTGAGTATGC 58.973 45.455 22.31 5.66 38.06 3.14
244 245 3.026694 GAGGGGCAAATTTGAGTATGCT 58.973 45.455 22.31 0.00 38.79 3.79
245 246 3.444029 AGGGGCAAATTTGAGTATGCTT 58.556 40.909 22.31 0.00 38.79 3.91
246 247 3.448660 AGGGGCAAATTTGAGTATGCTTC 59.551 43.478 22.31 0.44 38.79 3.86
247 248 3.438360 GGGCAAATTTGAGTATGCTTCG 58.562 45.455 22.31 0.00 38.79 3.79
248 249 3.128589 GGGCAAATTTGAGTATGCTTCGA 59.871 43.478 22.31 0.00 38.79 3.71
249 250 4.380444 GGGCAAATTTGAGTATGCTTCGAA 60.380 41.667 22.31 0.00 38.79 3.71
250 251 5.160641 GGCAAATTTGAGTATGCTTCGAAA 58.839 37.500 22.31 0.00 38.79 3.46
251 252 5.807011 GGCAAATTTGAGTATGCTTCGAAAT 59.193 36.000 22.31 0.00 38.79 2.17
252 253 6.311200 GGCAAATTTGAGTATGCTTCGAAATT 59.689 34.615 22.31 0.00 38.79 1.82
253 254 7.487829 GGCAAATTTGAGTATGCTTCGAAATTA 59.512 33.333 22.31 0.00 38.79 1.40
254 255 8.526681 GCAAATTTGAGTATGCTTCGAAATTAG 58.473 33.333 22.31 0.00 35.93 1.73
255 256 9.013490 CAAATTTGAGTATGCTTCGAAATTAGG 57.987 33.333 13.08 0.00 0.00 2.69
256 257 6.677781 TTTGAGTATGCTTCGAAATTAGGG 57.322 37.500 0.00 0.00 0.00 3.53
257 258 4.703897 TGAGTATGCTTCGAAATTAGGGG 58.296 43.478 0.00 0.00 0.00 4.79
258 259 4.163458 TGAGTATGCTTCGAAATTAGGGGT 59.837 41.667 0.00 0.00 0.00 4.95
259 260 5.364446 TGAGTATGCTTCGAAATTAGGGGTA 59.636 40.000 0.00 0.00 0.00 3.69
260 261 6.126997 TGAGTATGCTTCGAAATTAGGGGTAA 60.127 38.462 0.00 0.00 0.00 2.85
261 262 6.655930 AGTATGCTTCGAAATTAGGGGTAAA 58.344 36.000 0.00 0.00 0.00 2.01
262 263 7.287810 AGTATGCTTCGAAATTAGGGGTAAAT 58.712 34.615 0.00 0.00 0.00 1.40
263 264 6.635030 ATGCTTCGAAATTAGGGGTAAATC 57.365 37.500 0.00 0.00 0.00 2.17
264 265 5.751586 TGCTTCGAAATTAGGGGTAAATCT 58.248 37.500 0.00 0.00 0.00 2.40
265 266 5.588648 TGCTTCGAAATTAGGGGTAAATCTG 59.411 40.000 0.00 0.00 0.00 2.90
266 267 5.820947 GCTTCGAAATTAGGGGTAAATCTGA 59.179 40.000 0.00 0.00 0.00 3.27
267 268 6.017852 GCTTCGAAATTAGGGGTAAATCTGAG 60.018 42.308 0.00 0.00 0.00 3.35
268 269 6.555463 TCGAAATTAGGGGTAAATCTGAGT 57.445 37.500 0.00 0.00 0.00 3.41
269 270 7.664552 TCGAAATTAGGGGTAAATCTGAGTA 57.335 36.000 0.00 0.00 0.00 2.59
270 271 7.723324 TCGAAATTAGGGGTAAATCTGAGTAG 58.277 38.462 0.00 0.00 0.00 2.57
271 272 7.343833 TCGAAATTAGGGGTAAATCTGAGTAGT 59.656 37.037 0.00 0.00 0.00 2.73
272 273 7.438459 CGAAATTAGGGGTAAATCTGAGTAGTG 59.562 40.741 0.00 0.00 0.00 2.74
273 274 6.749036 ATTAGGGGTAAATCTGAGTAGTGG 57.251 41.667 0.00 0.00 0.00 4.00
274 275 3.385115 AGGGGTAAATCTGAGTAGTGGG 58.615 50.000 0.00 0.00 0.00 4.61
275 276 3.113043 GGGGTAAATCTGAGTAGTGGGT 58.887 50.000 0.00 0.00 0.00 4.51
276 277 3.522343 GGGGTAAATCTGAGTAGTGGGTT 59.478 47.826 0.00 0.00 0.00 4.11
277 278 4.018688 GGGGTAAATCTGAGTAGTGGGTTT 60.019 45.833 0.00 0.00 0.00 3.27
278 279 4.941873 GGGTAAATCTGAGTAGTGGGTTTG 59.058 45.833 0.00 0.00 0.00 2.93
279 280 5.280317 GGGTAAATCTGAGTAGTGGGTTTGA 60.280 44.000 0.00 0.00 0.00 2.69
280 281 5.875359 GGTAAATCTGAGTAGTGGGTTTGAG 59.125 44.000 0.00 0.00 0.00 3.02
281 282 5.568620 AAATCTGAGTAGTGGGTTTGAGT 57.431 39.130 0.00 0.00 0.00 3.41
282 283 5.568620 AATCTGAGTAGTGGGTTTGAGTT 57.431 39.130 0.00 0.00 0.00 3.01
283 284 6.681729 AATCTGAGTAGTGGGTTTGAGTTA 57.318 37.500 0.00 0.00 0.00 2.24
284 285 5.723672 TCTGAGTAGTGGGTTTGAGTTAG 57.276 43.478 0.00 0.00 0.00 2.34
285 286 4.527038 TCTGAGTAGTGGGTTTGAGTTAGG 59.473 45.833 0.00 0.00 0.00 2.69
286 287 3.581332 TGAGTAGTGGGTTTGAGTTAGGG 59.419 47.826 0.00 0.00 0.00 3.53
287 288 2.910977 AGTAGTGGGTTTGAGTTAGGGG 59.089 50.000 0.00 0.00 0.00 4.79
288 289 0.404426 AGTGGGTTTGAGTTAGGGGC 59.596 55.000 0.00 0.00 0.00 5.80
289 290 0.111639 GTGGGTTTGAGTTAGGGGCA 59.888 55.000 0.00 0.00 0.00 5.36
290 291 0.111639 TGGGTTTGAGTTAGGGGCAC 59.888 55.000 0.00 0.00 0.00 5.01
291 292 0.111639 GGGTTTGAGTTAGGGGCACA 59.888 55.000 0.00 0.00 0.00 4.57
292 293 1.534729 GGTTTGAGTTAGGGGCACAG 58.465 55.000 0.00 0.00 0.00 3.66
293 294 1.073284 GGTTTGAGTTAGGGGCACAGA 59.927 52.381 0.00 0.00 0.00 3.41
294 295 2.290960 GGTTTGAGTTAGGGGCACAGAT 60.291 50.000 0.00 0.00 0.00 2.90
295 296 2.749621 GTTTGAGTTAGGGGCACAGATG 59.250 50.000 0.00 0.00 0.00 2.90
296 297 1.656587 TGAGTTAGGGGCACAGATGT 58.343 50.000 0.00 0.00 0.00 3.06
297 298 2.827755 TGAGTTAGGGGCACAGATGTA 58.172 47.619 0.00 0.00 0.00 2.29
298 299 3.178046 TGAGTTAGGGGCACAGATGTAA 58.822 45.455 0.00 0.00 0.00 2.41
299 300 3.585289 TGAGTTAGGGGCACAGATGTAAA 59.415 43.478 0.00 0.00 0.00 2.01
300 301 4.227300 TGAGTTAGGGGCACAGATGTAAAT 59.773 41.667 0.00 0.00 0.00 1.40
301 302 4.526970 AGTTAGGGGCACAGATGTAAATG 58.473 43.478 0.00 0.00 0.00 2.32
302 303 2.442236 AGGGGCACAGATGTAAATGG 57.558 50.000 0.00 0.00 0.00 3.16
303 304 1.640670 AGGGGCACAGATGTAAATGGT 59.359 47.619 0.00 0.00 0.00 3.55
304 305 2.024414 GGGGCACAGATGTAAATGGTC 58.976 52.381 0.00 0.00 0.00 4.02
305 306 2.024414 GGGCACAGATGTAAATGGTCC 58.976 52.381 0.00 0.00 0.00 4.46
306 307 1.670811 GGCACAGATGTAAATGGTCCG 59.329 52.381 0.00 0.00 0.00 4.79
312 313 5.049060 CACAGATGTAAATGGTCCGAAACAA 60.049 40.000 0.00 0.00 0.00 2.83
319 320 9.793259 ATGTAAATGGTCCGAAACAATATATCT 57.207 29.630 0.00 0.00 0.00 1.98
349 350 5.890334 TGAACAAGAACAACATCTTTGACC 58.110 37.500 0.00 0.00 37.56 4.02
401 402 7.174107 AGGAATGCATAATTTACAGTTTGCT 57.826 32.000 0.00 0.00 0.00 3.91
427 428 3.825328 AGTTTTGATCACCTGTTGCTCT 58.175 40.909 0.00 0.00 0.00 4.09
442 443 3.726557 TGCTCTTTGATCTGACCCAAT 57.273 42.857 0.00 0.00 0.00 3.16
457 458 6.537301 TCTGACCCAATCAATACGTTTGATAC 59.463 38.462 19.35 12.32 38.11 2.24
475 476 6.774354 TGATACTGAAGGTTTAAACGTGAC 57.226 37.500 13.87 11.49 0.00 3.67
534 535 5.473504 GGTGACCATATTTTTCAGCGGATAT 59.526 40.000 0.00 0.00 0.00 1.63
535 536 6.373779 GTGACCATATTTTTCAGCGGATATG 58.626 40.000 0.00 0.00 34.04 1.78
536 537 5.048782 TGACCATATTTTTCAGCGGATATGC 60.049 40.000 0.00 0.00 33.31 3.14
537 538 4.218417 ACCATATTTTTCAGCGGATATGCC 59.782 41.667 0.00 0.00 33.31 4.40
666 672 4.196971 GCTGGTATATCCCGTGAACTTTT 58.803 43.478 0.00 0.00 34.77 2.27
676 682 5.299949 TCCCGTGAACTTTTACTCTTAACC 58.700 41.667 0.00 0.00 0.00 2.85
692 698 0.740737 AACCATTTATCTGCAGCCGC 59.259 50.000 9.47 0.00 39.24 6.53
729 735 9.923143 TGATATCTTGTTATATCCCGTAAACTG 57.077 33.333 3.98 0.00 37.84 3.16
764 770 1.671901 CCAACACCTGGTTTTGCCGT 61.672 55.000 18.11 0.00 40.78 5.68
772 778 4.279043 GTTTTGCCGTTGCCGCCT 62.279 61.111 0.00 0.00 36.33 5.52
873 885 0.463620 TCCCATGTTGATGCGATCGA 59.536 50.000 21.57 4.34 0.00 3.59
928 940 2.414612 TCCCTCCTATAAAATGGCCGT 58.585 47.619 0.00 0.00 0.00 5.68
979 992 2.388232 CGCAAACCCAGTAGCCGAC 61.388 63.158 0.00 0.00 0.00 4.79
985 998 0.899717 ACCCAGTAGCCGACCGTAAA 60.900 55.000 0.00 0.00 0.00 2.01
1194 1213 2.535317 AGCAACCCACCCCCATCT 60.535 61.111 0.00 0.00 0.00 2.90
1200 1219 3.797353 CCACCCCCATCTGTCCCG 61.797 72.222 0.00 0.00 0.00 5.14
1203 1267 2.365635 CCCCCATCTGTCCCGTCT 60.366 66.667 0.00 0.00 0.00 4.18
1209 1273 1.078528 ATCTGTCCCGTCTGTCCCA 59.921 57.895 0.00 0.00 0.00 4.37
1323 1387 2.370445 CCCATCCGTCCCTGCTTCT 61.370 63.158 0.00 0.00 0.00 2.85
1410 1474 2.264480 CTGACGCCGTTGATGGGA 59.736 61.111 0.00 0.00 0.00 4.37
1557 1621 1.031571 TCAACAAGATCATGCCCGCC 61.032 55.000 0.00 0.00 0.00 6.13
1590 1654 2.280389 CGCATGATGTCCCTCCCG 60.280 66.667 0.00 0.00 0.00 5.14
1668 1732 2.915349 TCGTAGCCGATCTTCACTACT 58.085 47.619 0.00 0.00 38.40 2.57
1669 1733 2.612672 TCGTAGCCGATCTTCACTACTG 59.387 50.000 0.00 0.00 38.40 2.74
1670 1734 2.355132 CGTAGCCGATCTTCACTACTGT 59.645 50.000 0.00 0.00 34.23 3.55
1671 1735 3.558829 CGTAGCCGATCTTCACTACTGTA 59.441 47.826 0.00 0.00 34.23 2.74
1672 1736 4.213694 CGTAGCCGATCTTCACTACTGTAT 59.786 45.833 0.00 0.00 34.23 2.29
1673 1737 5.277876 CGTAGCCGATCTTCACTACTGTATT 60.278 44.000 0.00 0.00 34.23 1.89
1674 1738 6.073385 CGTAGCCGATCTTCACTACTGTATTA 60.073 42.308 0.00 0.00 34.23 0.98
1675 1739 6.902771 AGCCGATCTTCACTACTGTATTAT 57.097 37.500 0.00 0.00 0.00 1.28
1676 1740 6.682746 AGCCGATCTTCACTACTGTATTATG 58.317 40.000 0.00 0.00 0.00 1.90
1677 1741 6.265649 AGCCGATCTTCACTACTGTATTATGT 59.734 38.462 0.00 0.00 0.00 2.29
1678 1742 6.924060 GCCGATCTTCACTACTGTATTATGTT 59.076 38.462 0.00 0.00 0.00 2.71
1679 1743 7.438459 GCCGATCTTCACTACTGTATTATGTTT 59.562 37.037 0.00 0.00 0.00 2.83
1680 1744 8.969267 CCGATCTTCACTACTGTATTATGTTTC 58.031 37.037 0.00 0.00 0.00 2.78
1705 1769 9.770097 TCTATTTTTGGCATTGTTATTTTGTGA 57.230 25.926 0.00 0.00 0.00 3.58
1711 1775 7.897575 TGGCATTGTTATTTTGTGAATTACC 57.102 32.000 0.00 0.00 0.00 2.85
1712 1776 7.675062 TGGCATTGTTATTTTGTGAATTACCT 58.325 30.769 0.00 0.00 0.00 3.08
1719 1783 7.812191 TGTTATTTTGTGAATTACCTGCATGAC 59.188 33.333 0.00 0.00 0.00 3.06
1720 1784 4.782019 TTTGTGAATTACCTGCATGACC 57.218 40.909 0.00 0.00 0.00 4.02
1743 1809 5.088739 CGGAGGAAGATTGAATTTTTGTCG 58.911 41.667 0.00 0.00 0.00 4.35
1790 1856 2.042843 CTGGACCCTCCTACCGCT 60.043 66.667 0.00 0.00 37.46 5.52
1805 1871 3.806667 GCTCCAGCAGCCCCATCT 61.807 66.667 0.00 0.00 43.17 2.90
1818 1884 2.158798 GCCCCATCTCCAAGTAACTACC 60.159 54.545 0.00 0.00 0.00 3.18
1822 1888 4.323257 CCCATCTCCAAGTAACTACCGTTT 60.323 45.833 0.00 0.00 34.59 3.60
1827 1893 4.886579 TCCAAGTAACTACCGTTTCCTTC 58.113 43.478 0.00 0.00 34.59 3.46
1847 1913 4.280436 TCGGAAATTCTGCCTTCACTAA 57.720 40.909 0.00 0.00 0.00 2.24
1848 1914 4.647611 TCGGAAATTCTGCCTTCACTAAA 58.352 39.130 0.00 0.00 0.00 1.85
1849 1915 5.253330 TCGGAAATTCTGCCTTCACTAAAT 58.747 37.500 0.00 0.00 0.00 1.40
1867 1933 9.360901 TCACTAAATAATAATTTGGCCATGCTA 57.639 29.630 6.09 0.00 37.13 3.49
1893 1960 7.438459 AGCTAGTGTTAATTTGTCGTATGATCC 59.562 37.037 0.00 0.00 0.00 3.36
1895 1962 7.303634 AGTGTTAATTTGTCGTATGATCCAC 57.696 36.000 0.00 0.00 0.00 4.02
1896 1963 6.876789 AGTGTTAATTTGTCGTATGATCCACA 59.123 34.615 0.00 0.00 0.00 4.17
1903 1970 3.128764 TGTCGTATGATCCACAGTCTGAC 59.871 47.826 6.91 0.00 0.00 3.51
1940 2007 3.139850 CTCTATCCTTTGCAGAGCCATG 58.860 50.000 0.00 0.00 30.21 3.66
1952 2019 2.093816 CAGAGCCATGACTGTAGAAGCA 60.094 50.000 0.00 0.00 0.00 3.91
1956 2023 3.199508 AGCCATGACTGTAGAAGCAAGAT 59.800 43.478 0.00 0.00 0.00 2.40
1981 2083 4.079253 TCCATCGATATGAAGTCCGATCA 58.921 43.478 0.00 0.00 39.40 2.92
2003 2105 9.713740 GATCAAGATGATGAATTAGTTGTCAAC 57.286 33.333 7.68 7.68 37.20 3.18
2004 2106 8.044060 TCAAGATGATGAATTAGTTGTCAACC 57.956 34.615 12.17 0.00 0.00 3.77
2013 2118 6.653320 TGAATTAGTTGTCAACCACATACTCC 59.347 38.462 12.17 0.00 33.90 3.85
2015 2120 3.740115 AGTTGTCAACCACATACTCCAC 58.260 45.455 12.17 0.00 33.90 4.02
2022 2127 5.638234 GTCAACCACATACTCCACTAGTTTC 59.362 44.000 0.00 0.00 39.80 2.78
2023 2128 4.451629 ACCACATACTCCACTAGTTTCG 57.548 45.455 0.00 0.00 39.80 3.46
2039 2144 9.071276 CACTAGTTTCGGTATAGTTAGGGATAA 57.929 37.037 0.00 0.00 0.00 1.75
2137 2244 9.799106 TCTGTAGGAGAATTCTTTTCTTTTCAT 57.201 29.630 9.87 0.00 0.00 2.57
2139 2246 9.573166 TGTAGGAGAATTCTTTTCTTTTCATCA 57.427 29.630 9.87 0.00 0.00 3.07
2180 2287 7.545615 TGATCAATATTAGTCCATACGTGCATC 59.454 37.037 0.00 0.00 0.00 3.91
2212 2319 5.463392 CGTAAGTGTCTATATGCATGTGCTT 59.537 40.000 10.16 6.59 42.66 3.91
2213 2320 6.018751 CGTAAGTGTCTATATGCATGTGCTTT 60.019 38.462 10.16 0.00 42.66 3.51
2214 2321 7.169140 CGTAAGTGTCTATATGCATGTGCTTTA 59.831 37.037 10.16 0.00 42.66 1.85
2215 2322 6.851222 AGTGTCTATATGCATGTGCTTTAC 57.149 37.500 10.16 0.76 42.66 2.01
2216 2323 5.463392 AGTGTCTATATGCATGTGCTTTACG 59.537 40.000 10.16 0.00 42.66 3.18
2217 2324 4.749598 TGTCTATATGCATGTGCTTTACGG 59.250 41.667 10.16 0.00 42.66 4.02
2218 2325 4.152402 GTCTATATGCATGTGCTTTACGGG 59.848 45.833 10.16 0.00 42.66 5.28
2219 2326 2.411628 TATGCATGTGCTTTACGGGT 57.588 45.000 10.16 0.00 42.66 5.28
2220 2327 0.810648 ATGCATGTGCTTTACGGGTG 59.189 50.000 0.00 0.00 42.66 4.61
2221 2328 1.154035 GCATGTGCTTTACGGGTGC 60.154 57.895 0.00 0.00 38.21 5.01
2245 2352 0.445436 GCGTGTTGGATCAGCTCTTG 59.555 55.000 0.00 0.00 0.00 3.02
2246 2353 1.941209 GCGTGTTGGATCAGCTCTTGA 60.941 52.381 0.00 0.00 40.85 3.02
2255 2362 5.503002 TGGATCAGCTCTTGATTCAAATCA 58.497 37.500 1.30 1.30 46.59 2.57
2258 2365 7.123697 TGGATCAGCTCTTGATTCAAATCATTT 59.876 33.333 6.27 0.00 46.59 2.32
2259 2366 7.648510 GGATCAGCTCTTGATTCAAATCATTTC 59.351 37.037 6.27 0.00 46.51 2.17
2305 2412 4.873129 ATCTGCAGGGTACGCGCG 62.873 66.667 30.96 30.96 0.00 6.86
2307 2414 4.485834 CTGCAGGGTACGCGCGTA 62.486 66.667 36.55 36.55 0.00 4.42
2312 2419 0.722848 CAGGGTACGCGCGTATTTTT 59.277 50.000 40.91 25.01 32.82 1.94
2364 2491 0.179062 GTGAGGTGCTAGAGCCCATG 60.179 60.000 10.47 0.00 41.18 3.66
2366 2493 0.543749 GAGGTGCTAGAGCCCATGTT 59.456 55.000 10.47 0.00 41.18 2.71
2402 2529 1.147153 GGTGGATGCTAGAGCCCAC 59.853 63.158 17.10 17.10 46.12 4.61
2419 2548 0.167908 CACGTGTGTTGTGTGCTGTT 59.832 50.000 7.58 0.00 32.68 3.16
2427 2556 1.195448 GTTGTGTGCTGTTCCTCGATG 59.805 52.381 0.00 0.00 0.00 3.84
2457 2586 4.024302 GCTATGATACGTGGGCTTTTTACC 60.024 45.833 0.00 0.00 0.00 2.85
2465 2594 1.591703 GGCTTTTTACCAGGCCAGC 59.408 57.895 5.01 1.37 43.59 4.85
2466 2595 1.184970 GGCTTTTTACCAGGCCAGCA 61.185 55.000 5.01 0.00 43.59 4.41
2467 2596 0.897621 GCTTTTTACCAGGCCAGCAT 59.102 50.000 5.01 0.00 0.00 3.79
2468 2597 2.099405 GCTTTTTACCAGGCCAGCATA 58.901 47.619 5.01 0.00 0.00 3.14
2470 2599 1.762708 TTTTACCAGGCCAGCATAGC 58.237 50.000 5.01 0.00 0.00 2.97
2482 2611 2.423446 CATAGCCTGCCGGGTCTC 59.577 66.667 2.18 0.00 42.14 3.36
2483 2612 2.136878 CATAGCCTGCCGGGTCTCT 61.137 63.158 2.18 0.00 42.14 3.10
2484 2613 1.383248 ATAGCCTGCCGGGTCTCTT 60.383 57.895 2.18 0.00 42.14 2.85
2489 2622 3.965539 CTGCCGGGTCTCTTGCTGG 62.966 68.421 2.18 0.00 0.00 4.85
2601 2734 0.687354 GAGTTGGCCACTTGGAGAGA 59.313 55.000 3.88 0.00 35.01 3.10
2709 2842 1.394572 TGCGCATTCTTGATTCTGTCG 59.605 47.619 5.66 0.00 0.00 4.35
2710 2843 1.267732 GCGCATTCTTGATTCTGTCGG 60.268 52.381 0.30 0.00 0.00 4.79
2711 2844 1.267732 CGCATTCTTGATTCTGTCGGC 60.268 52.381 0.00 0.00 0.00 5.54
2712 2845 1.064654 GCATTCTTGATTCTGTCGGCC 59.935 52.381 0.00 0.00 0.00 6.13
2713 2846 1.328680 CATTCTTGATTCTGTCGGCCG 59.671 52.381 22.12 22.12 0.00 6.13
2714 2847 1.019278 TTCTTGATTCTGTCGGCCGC 61.019 55.000 23.51 16.75 0.00 6.53
2760 2894 1.670811 GCCGTATGGTGAATTCTGTGG 59.329 52.381 7.05 0.73 37.67 4.17
2763 2897 4.199310 CCGTATGGTGAATTCTGTGGAAT 58.801 43.478 7.05 0.00 43.26 3.01
2764 2898 5.364778 CCGTATGGTGAATTCTGTGGAATA 58.635 41.667 7.05 0.00 40.86 1.75
2765 2899 5.466728 CCGTATGGTGAATTCTGTGGAATAG 59.533 44.000 7.05 0.00 40.86 1.73
2766 2900 6.280643 CGTATGGTGAATTCTGTGGAATAGA 58.719 40.000 7.05 0.00 40.86 1.98
2767 2901 6.422100 CGTATGGTGAATTCTGTGGAATAGAG 59.578 42.308 7.05 0.00 40.86 2.43
2781 2915 6.436218 TGTGGAATAGAGTACTACAAGAGCAA 59.564 38.462 0.00 0.00 0.00 3.91
2784 2918 6.926272 GGAATAGAGTACTACAAGAGCAATGG 59.074 42.308 0.00 0.00 0.00 3.16
2837 2971 4.938080 ACGCACTCGAGATAGAATGATTT 58.062 39.130 21.68 0.00 39.41 2.17
2840 2974 5.233050 CGCACTCGAGATAGAATGATTTGTT 59.767 40.000 21.68 0.00 38.10 2.83
2841 2975 6.417930 CGCACTCGAGATAGAATGATTTGTTA 59.582 38.462 21.68 0.00 38.10 2.41
2843 2977 7.095857 GCACTCGAGATAGAATGATTTGTTAGG 60.096 40.741 21.68 0.00 0.00 2.69
2844 2978 8.138074 CACTCGAGATAGAATGATTTGTTAGGA 58.862 37.037 21.68 0.00 0.00 2.94
2845 2979 8.865090 ACTCGAGATAGAATGATTTGTTAGGAT 58.135 33.333 21.68 0.00 0.00 3.24
2866 3000 5.540911 GATTTCTCCAAAAATCCACTGCAA 58.459 37.500 0.00 0.00 38.94 4.08
2867 3001 5.549742 TTTCTCCAAAAATCCACTGCAAT 57.450 34.783 0.00 0.00 0.00 3.56
2887 3021 2.766313 TGCTCTGTATGCGTTTCACTT 58.234 42.857 0.00 0.00 0.00 3.16
2888 3022 2.480037 TGCTCTGTATGCGTTTCACTTG 59.520 45.455 0.00 0.00 0.00 3.16
2889 3023 2.159653 GCTCTGTATGCGTTTCACTTGG 60.160 50.000 0.00 0.00 0.00 3.61
2890 3024 3.067106 CTCTGTATGCGTTTCACTTGGT 58.933 45.455 0.00 0.00 0.00 3.67
2891 3025 3.472652 TCTGTATGCGTTTCACTTGGTT 58.527 40.909 0.00 0.00 0.00 3.67
2892 3026 4.633175 TCTGTATGCGTTTCACTTGGTTA 58.367 39.130 0.00 0.00 0.00 2.85
2893 3027 5.242434 TCTGTATGCGTTTCACTTGGTTAT 58.758 37.500 0.00 0.00 0.00 1.89
2894 3028 6.399743 TCTGTATGCGTTTCACTTGGTTATA 58.600 36.000 0.00 0.00 0.00 0.98
2895 3029 7.045416 TCTGTATGCGTTTCACTTGGTTATAT 58.955 34.615 0.00 0.00 0.00 0.86
2896 3030 7.551262 TCTGTATGCGTTTCACTTGGTTATATT 59.449 33.333 0.00 0.00 0.00 1.28
2897 3031 8.719560 TGTATGCGTTTCACTTGGTTATATTA 57.280 30.769 0.00 0.00 0.00 0.98
2898 3032 9.163899 TGTATGCGTTTCACTTGGTTATATTAA 57.836 29.630 0.00 0.00 0.00 1.40
2899 3033 9.646336 GTATGCGTTTCACTTGGTTATATTAAG 57.354 33.333 0.00 0.00 0.00 1.85
2900 3034 7.908827 TGCGTTTCACTTGGTTATATTAAGA 57.091 32.000 0.00 0.00 0.00 2.10
2901 3035 7.970384 TGCGTTTCACTTGGTTATATTAAGAG 58.030 34.615 0.00 0.00 0.00 2.85
2902 3036 7.604927 TGCGTTTCACTTGGTTATATTAAGAGT 59.395 33.333 0.00 0.00 0.00 3.24
2903 3037 9.090692 GCGTTTCACTTGGTTATATTAAGAGTA 57.909 33.333 0.00 0.00 0.00 2.59
2913 3047 9.467258 TGGTTATATTAAGAGTATGTGTAACGC 57.533 33.333 0.00 0.00 42.39 4.84
2914 3048 8.919661 GGTTATATTAAGAGTATGTGTAACGCC 58.080 37.037 0.00 0.00 42.39 5.68
2915 3049 8.919661 GTTATATTAAGAGTATGTGTAACGCCC 58.080 37.037 0.00 0.00 42.39 6.13
2916 3050 2.685850 AAGAGTATGTGTAACGCCCC 57.314 50.000 0.00 0.00 42.39 5.80
2917 3051 0.828677 AGAGTATGTGTAACGCCCCC 59.171 55.000 0.00 0.00 42.39 5.40
2918 3052 0.828677 GAGTATGTGTAACGCCCCCT 59.171 55.000 0.00 0.00 42.39 4.79
2919 3053 0.828677 AGTATGTGTAACGCCCCCTC 59.171 55.000 0.00 0.00 42.39 4.30
2920 3054 0.179065 GTATGTGTAACGCCCCCTCC 60.179 60.000 0.00 0.00 42.39 4.30
2921 3055 1.339644 TATGTGTAACGCCCCCTCCC 61.340 60.000 0.00 0.00 42.39 4.30
2922 3056 3.007323 GTGTAACGCCCCCTCCCT 61.007 66.667 0.00 0.00 0.00 4.20
2923 3057 2.686106 TGTAACGCCCCCTCCCTC 60.686 66.667 0.00 0.00 0.00 4.30
2924 3058 3.846430 GTAACGCCCCCTCCCTCG 61.846 72.222 0.00 0.00 0.00 4.63
2925 3059 4.064768 TAACGCCCCCTCCCTCGA 62.065 66.667 0.00 0.00 0.00 4.04
2930 3064 2.043652 CCCCCTCCCTCGACGTTA 60.044 66.667 0.00 0.00 0.00 3.18
2931 3065 2.125961 CCCCCTCCCTCGACGTTAG 61.126 68.421 0.00 0.00 0.00 2.34
2932 3066 1.379576 CCCCTCCCTCGACGTTAGT 60.380 63.158 0.00 0.00 0.00 2.24
2933 3067 1.664321 CCCCTCCCTCGACGTTAGTG 61.664 65.000 0.00 0.00 0.00 2.74
2934 3068 1.664321 CCCTCCCTCGACGTTAGTGG 61.664 65.000 0.00 0.00 0.00 4.00
2935 3069 0.964358 CCTCCCTCGACGTTAGTGGT 60.964 60.000 10.67 0.00 0.00 4.16
2936 3070 0.886563 CTCCCTCGACGTTAGTGGTT 59.113 55.000 10.67 0.00 0.00 3.67
2937 3071 2.086869 CTCCCTCGACGTTAGTGGTTA 58.913 52.381 10.67 1.15 0.00 2.85
2938 3072 2.489329 CTCCCTCGACGTTAGTGGTTAA 59.511 50.000 10.67 0.00 0.00 2.01
2939 3073 3.091545 TCCCTCGACGTTAGTGGTTAAT 58.908 45.455 10.67 0.00 0.00 1.40
2940 3074 3.511146 TCCCTCGACGTTAGTGGTTAATT 59.489 43.478 10.67 0.00 0.00 1.40
2941 3075 4.704540 TCCCTCGACGTTAGTGGTTAATTA 59.295 41.667 10.67 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 6.101296 TGGGCCCCAAATAGTAAAAAGAAAAA 59.899 34.615 22.27 0.00 0.00 1.94
15 16 5.607171 TGGGCCCCAAATAGTAAAAAGAAAA 59.393 36.000 22.27 0.00 0.00 2.29
16 17 5.012251 GTGGGCCCCAAATAGTAAAAAGAAA 59.988 40.000 22.27 0.00 34.18 2.52
17 18 4.528987 GTGGGCCCCAAATAGTAAAAAGAA 59.471 41.667 22.27 0.00 34.18 2.52
18 19 4.090819 GTGGGCCCCAAATAGTAAAAAGA 58.909 43.478 22.27 0.00 34.18 2.52
19 20 3.835395 TGTGGGCCCCAAATAGTAAAAAG 59.165 43.478 22.27 0.00 34.18 2.27
20 21 3.858135 TGTGGGCCCCAAATAGTAAAAA 58.142 40.909 22.27 0.00 34.18 1.94
21 22 3.544698 TGTGGGCCCCAAATAGTAAAA 57.455 42.857 22.27 0.00 34.18 1.52
22 23 3.245803 ACATGTGGGCCCCAAATAGTAAA 60.246 43.478 22.27 0.00 34.18 2.01
23 24 2.313342 ACATGTGGGCCCCAAATAGTAA 59.687 45.455 22.27 0.00 34.18 2.24
24 25 1.926665 ACATGTGGGCCCCAAATAGTA 59.073 47.619 22.27 0.00 34.18 1.82
25 26 0.709992 ACATGTGGGCCCCAAATAGT 59.290 50.000 22.27 7.65 34.18 2.12
26 27 2.746279 TACATGTGGGCCCCAAATAG 57.254 50.000 22.27 6.93 34.18 1.73
27 28 2.313342 ACTTACATGTGGGCCCCAAATA 59.687 45.455 22.27 10.53 34.18 1.40
28 29 1.078656 ACTTACATGTGGGCCCCAAAT 59.921 47.619 22.27 0.00 34.18 2.32
29 30 0.485099 ACTTACATGTGGGCCCCAAA 59.515 50.000 22.27 0.00 34.18 3.28
30 31 0.251564 CACTTACATGTGGGCCCCAA 60.252 55.000 22.27 7.85 34.18 4.12
31 32 1.382240 CACTTACATGTGGGCCCCA 59.618 57.895 22.27 17.75 34.56 4.96
32 33 2.052104 GCACTTACATGTGGGCCCC 61.052 63.158 22.27 11.72 38.31 5.80
33 34 2.406616 CGCACTTACATGTGGGCCC 61.407 63.158 17.59 17.59 42.34 5.80
34 35 3.187058 CGCACTTACATGTGGGCC 58.813 61.111 9.11 0.00 42.34 5.80
37 38 1.995484 CTCTCACGCACTTACATGTGG 59.005 52.381 9.11 3.79 38.31 4.17
38 39 2.919859 CTCTCTCACGCACTTACATGTG 59.080 50.000 9.11 0.00 40.62 3.21
39 40 2.820197 TCTCTCTCACGCACTTACATGT 59.180 45.455 2.69 2.69 0.00 3.21
40 41 3.433709 CTCTCTCTCACGCACTTACATG 58.566 50.000 0.00 0.00 0.00 3.21
41 42 2.425312 CCTCTCTCTCACGCACTTACAT 59.575 50.000 0.00 0.00 0.00 2.29
42 43 1.813178 CCTCTCTCTCACGCACTTACA 59.187 52.381 0.00 0.00 0.00 2.41
43 44 1.133407 CCCTCTCTCTCACGCACTTAC 59.867 57.143 0.00 0.00 0.00 2.34
44 45 1.271982 ACCCTCTCTCTCACGCACTTA 60.272 52.381 0.00 0.00 0.00 2.24
45 46 0.540830 ACCCTCTCTCTCACGCACTT 60.541 55.000 0.00 0.00 0.00 3.16
46 47 1.075836 ACCCTCTCTCTCACGCACT 59.924 57.895 0.00 0.00 0.00 4.40
47 48 1.214062 CACCCTCTCTCTCACGCAC 59.786 63.158 0.00 0.00 0.00 5.34
48 49 0.962855 CTCACCCTCTCTCTCACGCA 60.963 60.000 0.00 0.00 0.00 5.24
49 50 0.678366 TCTCACCCTCTCTCTCACGC 60.678 60.000 0.00 0.00 0.00 5.34
50 51 1.065782 TCTCTCACCCTCTCTCTCACG 60.066 57.143 0.00 0.00 0.00 4.35
51 52 2.799126 TCTCTCACCCTCTCTCTCAC 57.201 55.000 0.00 0.00 0.00 3.51
52 53 3.332187 TCTTTCTCTCACCCTCTCTCTCA 59.668 47.826 0.00 0.00 0.00 3.27
53 54 3.947834 CTCTTTCTCTCACCCTCTCTCTC 59.052 52.174 0.00 0.00 0.00 3.20
54 55 3.333680 ACTCTTTCTCTCACCCTCTCTCT 59.666 47.826 0.00 0.00 0.00 3.10
55 56 3.697166 ACTCTTTCTCTCACCCTCTCTC 58.303 50.000 0.00 0.00 0.00 3.20
56 57 3.825908 ACTCTTTCTCTCACCCTCTCT 57.174 47.619 0.00 0.00 0.00 3.10
57 58 4.882842 AAACTCTTTCTCTCACCCTCTC 57.117 45.455 0.00 0.00 0.00 3.20
58 59 5.638530 AAAAACTCTTTCTCTCACCCTCT 57.361 39.130 0.00 0.00 0.00 3.69
77 78 7.847711 TGGGATCCACTCAGAAAAATAAAAA 57.152 32.000 15.23 0.00 0.00 1.94
90 91 7.312697 TGTCACTTACATGTGGGATCCACTC 62.313 48.000 15.23 4.82 43.30 3.51
91 92 5.550418 TGTCACTTACATGTGGGATCCACT 61.550 45.833 15.23 1.32 43.30 4.00
92 93 3.307410 TGTCACTTACATGTGGGATCCAC 60.307 47.826 15.23 10.50 43.25 4.02
93 94 2.909662 TGTCACTTACATGTGGGATCCA 59.090 45.455 15.23 0.00 38.40 3.41
94 95 3.270877 GTGTCACTTACATGTGGGATCC 58.729 50.000 9.11 1.92 41.10 3.36
95 96 3.937814 TGTGTCACTTACATGTGGGATC 58.062 45.455 9.11 0.00 41.10 3.36
96 97 4.264253 CATGTGTCACTTACATGTGGGAT 58.736 43.478 9.11 0.00 46.37 3.85
97 98 3.673902 CATGTGTCACTTACATGTGGGA 58.326 45.455 9.11 0.00 46.37 4.37
103 104 2.305635 TGCCTCCATGTGTCACTTACAT 59.694 45.455 4.27 0.00 41.10 2.29
104 105 1.696884 TGCCTCCATGTGTCACTTACA 59.303 47.619 4.27 0.00 35.06 2.41
105 106 2.350522 CTGCCTCCATGTGTCACTTAC 58.649 52.381 4.27 0.00 0.00 2.34
106 107 1.278985 CCTGCCTCCATGTGTCACTTA 59.721 52.381 4.27 0.00 0.00 2.24
107 108 0.037303 CCTGCCTCCATGTGTCACTT 59.963 55.000 4.27 0.00 0.00 3.16
108 109 1.681666 CCTGCCTCCATGTGTCACT 59.318 57.895 4.27 0.00 0.00 3.41
109 110 1.377725 CCCTGCCTCCATGTGTCAC 60.378 63.158 0.00 0.00 0.00 3.67
110 111 2.605607 CCCCTGCCTCCATGTGTCA 61.606 63.158 0.00 0.00 0.00 3.58
111 112 2.273449 CCCCTGCCTCCATGTGTC 59.727 66.667 0.00 0.00 0.00 3.67
112 113 4.052518 GCCCCTGCCTCCATGTGT 62.053 66.667 0.00 0.00 0.00 3.72
113 114 3.588817 TTGCCCCTGCCTCCATGTG 62.589 63.158 0.00 0.00 36.33 3.21
114 115 2.384933 TTTTGCCCCTGCCTCCATGT 62.385 55.000 0.00 0.00 36.33 3.21
115 116 0.979187 ATTTTGCCCCTGCCTCCATG 60.979 55.000 0.00 0.00 36.33 3.66
116 117 0.979187 CATTTTGCCCCTGCCTCCAT 60.979 55.000 0.00 0.00 36.33 3.41
117 118 1.610086 CATTTTGCCCCTGCCTCCA 60.610 57.895 0.00 0.00 36.33 3.86
118 119 1.607801 GACATTTTGCCCCTGCCTCC 61.608 60.000 0.00 0.00 36.33 4.30
119 120 1.607801 GGACATTTTGCCCCTGCCTC 61.608 60.000 0.00 0.00 36.33 4.70
120 121 1.610379 GGACATTTTGCCCCTGCCT 60.610 57.895 0.00 0.00 36.33 4.75
121 122 1.479368 TTGGACATTTTGCCCCTGCC 61.479 55.000 0.00 0.00 36.33 4.85
122 123 0.614812 ATTGGACATTTTGCCCCTGC 59.385 50.000 0.00 0.00 38.26 4.85
123 124 4.252878 GTTTATTGGACATTTTGCCCCTG 58.747 43.478 0.00 0.00 0.00 4.45
124 125 3.056179 CGTTTATTGGACATTTTGCCCCT 60.056 43.478 0.00 0.00 0.00 4.79
125 126 3.258228 CGTTTATTGGACATTTTGCCCC 58.742 45.455 0.00 0.00 0.00 5.80
126 127 2.670905 GCGTTTATTGGACATTTTGCCC 59.329 45.455 0.00 0.00 0.00 5.36
127 128 2.670905 GGCGTTTATTGGACATTTTGCC 59.329 45.455 0.00 0.00 0.00 4.52
128 129 2.670905 GGGCGTTTATTGGACATTTTGC 59.329 45.455 0.00 0.00 0.00 3.68
129 130 3.258228 GGGGCGTTTATTGGACATTTTG 58.742 45.455 0.00 0.00 0.00 2.44
130 131 2.094442 CGGGGCGTTTATTGGACATTTT 60.094 45.455 0.00 0.00 0.00 1.82
131 132 1.474879 CGGGGCGTTTATTGGACATTT 59.525 47.619 0.00 0.00 0.00 2.32
132 133 1.099689 CGGGGCGTTTATTGGACATT 58.900 50.000 0.00 0.00 0.00 2.71
133 134 0.034863 ACGGGGCGTTTATTGGACAT 60.035 50.000 0.00 0.00 36.35 3.06
134 135 1.375706 ACGGGGCGTTTATTGGACA 59.624 52.632 0.00 0.00 36.35 4.02
135 136 4.306767 ACGGGGCGTTTATTGGAC 57.693 55.556 0.00 0.00 36.35 4.02
144 145 2.684192 TTTGACCATCAACGGGGCGT 62.684 55.000 0.00 0.00 43.97 5.68
145 146 1.969064 TTTGACCATCAACGGGGCG 60.969 57.895 0.00 0.00 35.89 6.13
146 147 1.584495 GTTTGACCATCAACGGGGC 59.416 57.895 0.00 0.00 35.89 5.80
147 148 1.248101 GGGTTTGACCATCAACGGGG 61.248 60.000 0.00 0.00 41.02 5.73
148 149 1.248101 GGGGTTTGACCATCAACGGG 61.248 60.000 0.00 0.00 41.02 5.28
149 150 0.251165 AGGGGTTTGACCATCAACGG 60.251 55.000 0.00 0.00 41.02 4.44
150 151 1.616159 AAGGGGTTTGACCATCAACG 58.384 50.000 0.00 0.00 41.02 4.10
151 152 2.962421 TCAAAGGGGTTTGACCATCAAC 59.038 45.455 0.00 0.00 41.02 3.18
152 153 3.320610 TCAAAGGGGTTTGACCATCAA 57.679 42.857 0.00 0.00 41.02 2.57
159 160 1.566703 TGTCCAGTCAAAGGGGTTTGA 59.433 47.619 0.00 0.00 38.49 2.69
160 161 1.956477 CTGTCCAGTCAAAGGGGTTTG 59.044 52.381 0.00 0.00 0.00 2.93
161 162 1.850345 TCTGTCCAGTCAAAGGGGTTT 59.150 47.619 0.00 0.00 0.00 3.27
162 163 1.518367 TCTGTCCAGTCAAAGGGGTT 58.482 50.000 0.00 0.00 0.00 4.11
163 164 1.518367 TTCTGTCCAGTCAAAGGGGT 58.482 50.000 0.00 0.00 0.00 4.95
164 165 2.230660 GTTTCTGTCCAGTCAAAGGGG 58.769 52.381 0.00 0.00 0.00 4.79
165 166 2.880890 CTGTTTCTGTCCAGTCAAAGGG 59.119 50.000 0.00 0.00 0.00 3.95
166 167 3.808728 TCTGTTTCTGTCCAGTCAAAGG 58.191 45.455 0.00 0.00 0.00 3.11
167 168 4.260375 CGTTCTGTTTCTGTCCAGTCAAAG 60.260 45.833 0.00 0.00 0.00 2.77
168 169 3.621268 CGTTCTGTTTCTGTCCAGTCAAA 59.379 43.478 0.00 0.00 0.00 2.69
169 170 3.194861 CGTTCTGTTTCTGTCCAGTCAA 58.805 45.455 0.00 0.00 0.00 3.18
170 171 2.483013 CCGTTCTGTTTCTGTCCAGTCA 60.483 50.000 0.00 0.00 0.00 3.41
171 172 2.135933 CCGTTCTGTTTCTGTCCAGTC 58.864 52.381 0.00 0.00 0.00 3.51
172 173 1.760613 TCCGTTCTGTTTCTGTCCAGT 59.239 47.619 0.00 0.00 0.00 4.00
173 174 2.526304 TCCGTTCTGTTTCTGTCCAG 57.474 50.000 0.00 0.00 0.00 3.86
174 175 2.484770 CCTTCCGTTCTGTTTCTGTCCA 60.485 50.000 0.00 0.00 0.00 4.02
175 176 2.143925 CCTTCCGTTCTGTTTCTGTCC 58.856 52.381 0.00 0.00 0.00 4.02
176 177 2.143925 CCCTTCCGTTCTGTTTCTGTC 58.856 52.381 0.00 0.00 0.00 3.51
177 178 1.814248 GCCCTTCCGTTCTGTTTCTGT 60.814 52.381 0.00 0.00 0.00 3.41
178 179 0.875059 GCCCTTCCGTTCTGTTTCTG 59.125 55.000 0.00 0.00 0.00 3.02
179 180 0.472471 TGCCCTTCCGTTCTGTTTCT 59.528 50.000 0.00 0.00 0.00 2.52
180 181 1.534729 ATGCCCTTCCGTTCTGTTTC 58.465 50.000 0.00 0.00 0.00 2.78
181 182 1.995376 AATGCCCTTCCGTTCTGTTT 58.005 45.000 0.00 0.00 0.00 2.83
182 183 1.886542 GAAATGCCCTTCCGTTCTGTT 59.113 47.619 0.00 0.00 0.00 3.16
183 184 1.073923 AGAAATGCCCTTCCGTTCTGT 59.926 47.619 0.00 0.00 0.00 3.41
184 185 1.470098 CAGAAATGCCCTTCCGTTCTG 59.530 52.381 0.00 0.00 0.00 3.02
185 186 1.073923 ACAGAAATGCCCTTCCGTTCT 59.926 47.619 0.00 0.00 0.00 3.01
186 187 1.534729 ACAGAAATGCCCTTCCGTTC 58.465 50.000 0.00 0.00 0.00 3.95
187 188 2.871096 TACAGAAATGCCCTTCCGTT 57.129 45.000 0.00 0.00 0.00 4.44
188 189 2.618045 CCTTACAGAAATGCCCTTCCGT 60.618 50.000 0.00 0.00 0.00 4.69
189 190 2.017049 CCTTACAGAAATGCCCTTCCG 58.983 52.381 0.00 0.00 0.00 4.30
190 191 3.017442 GACCTTACAGAAATGCCCTTCC 58.983 50.000 0.00 0.00 0.00 3.46
191 192 3.440522 GTGACCTTACAGAAATGCCCTTC 59.559 47.826 0.00 0.00 0.00 3.46
192 193 3.074538 AGTGACCTTACAGAAATGCCCTT 59.925 43.478 0.00 0.00 0.00 3.95
193 194 2.644798 AGTGACCTTACAGAAATGCCCT 59.355 45.455 0.00 0.00 0.00 5.19
194 195 3.073274 AGTGACCTTACAGAAATGCCC 57.927 47.619 0.00 0.00 0.00 5.36
195 196 5.390567 CGTTAAGTGACCTTACAGAAATGCC 60.391 44.000 0.00 0.00 32.91 4.40
196 197 5.407387 TCGTTAAGTGACCTTACAGAAATGC 59.593 40.000 0.00 0.00 32.91 3.56
197 198 6.866770 TCTCGTTAAGTGACCTTACAGAAATG 59.133 38.462 0.00 0.00 32.91 2.32
198 199 6.989659 TCTCGTTAAGTGACCTTACAGAAAT 58.010 36.000 0.00 0.00 32.91 2.17
199 200 6.263842 TCTCTCGTTAAGTGACCTTACAGAAA 59.736 38.462 0.00 0.00 32.91 2.52
200 201 5.766670 TCTCTCGTTAAGTGACCTTACAGAA 59.233 40.000 0.00 0.00 32.91 3.02
201 202 5.311265 TCTCTCGTTAAGTGACCTTACAGA 58.689 41.667 0.00 0.00 32.91 3.41
202 203 5.392165 CCTCTCTCGTTAAGTGACCTTACAG 60.392 48.000 0.00 0.00 32.91 2.74
203 204 4.458295 CCTCTCTCGTTAAGTGACCTTACA 59.542 45.833 0.00 0.00 32.91 2.41
204 205 4.142425 CCCTCTCTCGTTAAGTGACCTTAC 60.142 50.000 0.00 0.00 32.91 2.34
205 206 4.015084 CCCTCTCTCGTTAAGTGACCTTA 58.985 47.826 0.00 0.00 31.89 2.69
206 207 2.826725 CCCTCTCTCGTTAAGTGACCTT 59.173 50.000 0.00 0.00 34.56 3.50
207 208 2.448453 CCCTCTCTCGTTAAGTGACCT 58.552 52.381 0.00 0.00 0.00 3.85
208 209 1.477295 CCCCTCTCTCGTTAAGTGACC 59.523 57.143 0.00 0.00 0.00 4.02
209 210 1.135053 GCCCCTCTCTCGTTAAGTGAC 60.135 57.143 0.00 0.00 0.00 3.67
210 211 1.183549 GCCCCTCTCTCGTTAAGTGA 58.816 55.000 0.00 0.00 0.00 3.41
211 212 0.895530 TGCCCCTCTCTCGTTAAGTG 59.104 55.000 0.00 0.00 0.00 3.16
212 213 1.640917 TTGCCCCTCTCTCGTTAAGT 58.359 50.000 0.00 0.00 0.00 2.24
213 214 2.762535 TTTGCCCCTCTCTCGTTAAG 57.237 50.000 0.00 0.00 0.00 1.85
214 215 3.713826 AATTTGCCCCTCTCTCGTTAA 57.286 42.857 0.00 0.00 0.00 2.01
215 216 3.008594 TCAAATTTGCCCCTCTCTCGTTA 59.991 43.478 13.54 0.00 0.00 3.18
216 217 2.162681 CAAATTTGCCCCTCTCTCGTT 58.837 47.619 5.01 0.00 0.00 3.85
217 218 1.351017 TCAAATTTGCCCCTCTCTCGT 59.649 47.619 13.54 0.00 0.00 4.18
218 219 2.012673 CTCAAATTTGCCCCTCTCTCG 58.987 52.381 13.54 0.00 0.00 4.04
219 220 3.078891 ACTCAAATTTGCCCCTCTCTC 57.921 47.619 13.54 0.00 0.00 3.20
220 221 4.530875 CATACTCAAATTTGCCCCTCTCT 58.469 43.478 13.54 0.00 0.00 3.10
221 222 3.067320 GCATACTCAAATTTGCCCCTCTC 59.933 47.826 13.54 0.00 0.00 3.20
222 223 3.026694 GCATACTCAAATTTGCCCCTCT 58.973 45.455 13.54 0.00 0.00 3.69
223 224 3.026694 AGCATACTCAAATTTGCCCCTC 58.973 45.455 13.54 1.42 35.71 4.30
224 225 3.105959 AGCATACTCAAATTTGCCCCT 57.894 42.857 13.54 1.36 35.71 4.79
225 226 3.734902 CGAAGCATACTCAAATTTGCCCC 60.735 47.826 13.54 0.00 35.71 5.80
226 227 3.128589 TCGAAGCATACTCAAATTTGCCC 59.871 43.478 13.54 0.00 35.71 5.36
227 228 4.355543 TCGAAGCATACTCAAATTTGCC 57.644 40.909 13.54 0.00 35.71 4.52
228 229 6.875926 ATTTCGAAGCATACTCAAATTTGC 57.124 33.333 13.54 1.11 35.34 3.68
229 230 9.013490 CCTAATTTCGAAGCATACTCAAATTTG 57.987 33.333 12.15 12.15 0.00 2.32
230 231 8.190784 CCCTAATTTCGAAGCATACTCAAATTT 58.809 33.333 0.00 0.00 0.00 1.82
231 232 7.201821 CCCCTAATTTCGAAGCATACTCAAATT 60.202 37.037 0.00 0.00 0.00 1.82
232 233 6.263168 CCCCTAATTTCGAAGCATACTCAAAT 59.737 38.462 0.00 0.00 0.00 2.32
233 234 5.588648 CCCCTAATTTCGAAGCATACTCAAA 59.411 40.000 0.00 0.00 0.00 2.69
234 235 5.123227 CCCCTAATTTCGAAGCATACTCAA 58.877 41.667 0.00 0.00 0.00 3.02
235 236 4.163458 ACCCCTAATTTCGAAGCATACTCA 59.837 41.667 0.00 0.00 0.00 3.41
236 237 4.704965 ACCCCTAATTTCGAAGCATACTC 58.295 43.478 0.00 0.00 0.00 2.59
237 238 4.772886 ACCCCTAATTTCGAAGCATACT 57.227 40.909 0.00 0.00 0.00 2.12
238 239 6.930667 TTTACCCCTAATTTCGAAGCATAC 57.069 37.500 0.00 0.00 0.00 2.39
239 240 7.444183 CAGATTTACCCCTAATTTCGAAGCATA 59.556 37.037 0.00 0.00 0.00 3.14
240 241 6.263168 CAGATTTACCCCTAATTTCGAAGCAT 59.737 38.462 0.00 0.00 0.00 3.79
241 242 5.588648 CAGATTTACCCCTAATTTCGAAGCA 59.411 40.000 0.00 0.00 0.00 3.91
242 243 5.820947 TCAGATTTACCCCTAATTTCGAAGC 59.179 40.000 0.00 0.00 0.00 3.86
243 244 7.048512 ACTCAGATTTACCCCTAATTTCGAAG 58.951 38.462 0.00 0.00 0.00 3.79
244 245 6.954232 ACTCAGATTTACCCCTAATTTCGAA 58.046 36.000 0.00 0.00 0.00 3.71
245 246 6.555463 ACTCAGATTTACCCCTAATTTCGA 57.445 37.500 0.00 0.00 0.00 3.71
246 247 7.438459 CACTACTCAGATTTACCCCTAATTTCG 59.562 40.741 0.00 0.00 0.00 3.46
247 248 7.715686 CCACTACTCAGATTTACCCCTAATTTC 59.284 40.741 0.00 0.00 0.00 2.17
248 249 7.366551 CCCACTACTCAGATTTACCCCTAATTT 60.367 40.741 0.00 0.00 0.00 1.82
249 250 6.101296 CCCACTACTCAGATTTACCCCTAATT 59.899 42.308 0.00 0.00 0.00 1.40
250 251 5.607171 CCCACTACTCAGATTTACCCCTAAT 59.393 44.000 0.00 0.00 0.00 1.73
251 252 4.966805 CCCACTACTCAGATTTACCCCTAA 59.033 45.833 0.00 0.00 0.00 2.69
252 253 4.015918 ACCCACTACTCAGATTTACCCCTA 60.016 45.833 0.00 0.00 0.00 3.53
253 254 3.246387 ACCCACTACTCAGATTTACCCCT 60.246 47.826 0.00 0.00 0.00 4.79
254 255 3.113043 ACCCACTACTCAGATTTACCCC 58.887 50.000 0.00 0.00 0.00 4.95
255 256 4.838904 AACCCACTACTCAGATTTACCC 57.161 45.455 0.00 0.00 0.00 3.69
256 257 5.801380 TCAAACCCACTACTCAGATTTACC 58.199 41.667 0.00 0.00 0.00 2.85
257 258 6.465084 ACTCAAACCCACTACTCAGATTTAC 58.535 40.000 0.00 0.00 0.00 2.01
258 259 6.681729 ACTCAAACCCACTACTCAGATTTA 57.318 37.500 0.00 0.00 0.00 1.40
259 260 5.568620 ACTCAAACCCACTACTCAGATTT 57.431 39.130 0.00 0.00 0.00 2.17
260 261 5.568620 AACTCAAACCCACTACTCAGATT 57.431 39.130 0.00 0.00 0.00 2.40
261 262 5.187967 CCTAACTCAAACCCACTACTCAGAT 59.812 44.000 0.00 0.00 0.00 2.90
262 263 4.527038 CCTAACTCAAACCCACTACTCAGA 59.473 45.833 0.00 0.00 0.00 3.27
263 264 4.322801 CCCTAACTCAAACCCACTACTCAG 60.323 50.000 0.00 0.00 0.00 3.35
264 265 3.581332 CCCTAACTCAAACCCACTACTCA 59.419 47.826 0.00 0.00 0.00 3.41
265 266 3.055312 CCCCTAACTCAAACCCACTACTC 60.055 52.174 0.00 0.00 0.00 2.59
266 267 2.910977 CCCCTAACTCAAACCCACTACT 59.089 50.000 0.00 0.00 0.00 2.57
267 268 2.617276 GCCCCTAACTCAAACCCACTAC 60.617 54.545 0.00 0.00 0.00 2.73
268 269 1.631898 GCCCCTAACTCAAACCCACTA 59.368 52.381 0.00 0.00 0.00 2.74
269 270 0.404426 GCCCCTAACTCAAACCCACT 59.596 55.000 0.00 0.00 0.00 4.00
270 271 0.111639 TGCCCCTAACTCAAACCCAC 59.888 55.000 0.00 0.00 0.00 4.61
271 272 0.111639 GTGCCCCTAACTCAAACCCA 59.888 55.000 0.00 0.00 0.00 4.51
272 273 0.111639 TGTGCCCCTAACTCAAACCC 59.888 55.000 0.00 0.00 0.00 4.11
273 274 1.073284 TCTGTGCCCCTAACTCAAACC 59.927 52.381 0.00 0.00 0.00 3.27
274 275 2.561478 TCTGTGCCCCTAACTCAAAC 57.439 50.000 0.00 0.00 0.00 2.93
275 276 2.375174 ACATCTGTGCCCCTAACTCAAA 59.625 45.455 0.00 0.00 0.00 2.69
276 277 1.985159 ACATCTGTGCCCCTAACTCAA 59.015 47.619 0.00 0.00 0.00 3.02
277 278 1.656587 ACATCTGTGCCCCTAACTCA 58.343 50.000 0.00 0.00 0.00 3.41
278 279 3.906720 TTACATCTGTGCCCCTAACTC 57.093 47.619 0.00 0.00 0.00 3.01
279 280 4.526970 CATTTACATCTGTGCCCCTAACT 58.473 43.478 0.00 0.00 0.00 2.24
280 281 3.632145 CCATTTACATCTGTGCCCCTAAC 59.368 47.826 0.00 0.00 0.00 2.34
281 282 3.268334 ACCATTTACATCTGTGCCCCTAA 59.732 43.478 0.00 0.00 0.00 2.69
282 283 2.849943 ACCATTTACATCTGTGCCCCTA 59.150 45.455 0.00 0.00 0.00 3.53
283 284 1.640670 ACCATTTACATCTGTGCCCCT 59.359 47.619 0.00 0.00 0.00 4.79
284 285 2.024414 GACCATTTACATCTGTGCCCC 58.976 52.381 0.00 0.00 0.00 5.80
285 286 2.024414 GGACCATTTACATCTGTGCCC 58.976 52.381 0.00 0.00 0.00 5.36
286 287 1.670811 CGGACCATTTACATCTGTGCC 59.329 52.381 0.00 0.00 0.00 5.01
287 288 2.627945 TCGGACCATTTACATCTGTGC 58.372 47.619 0.00 0.00 0.00 4.57
288 289 4.454161 TGTTTCGGACCATTTACATCTGTG 59.546 41.667 0.00 0.00 0.00 3.66
289 290 4.647611 TGTTTCGGACCATTTACATCTGT 58.352 39.130 0.00 0.00 0.00 3.41
290 291 5.621197 TTGTTTCGGACCATTTACATCTG 57.379 39.130 0.00 0.00 0.00 2.90
291 292 9.793259 ATATATTGTTTCGGACCATTTACATCT 57.207 29.630 0.00 0.00 0.00 2.90
293 294 9.793259 AGATATATTGTTTCGGACCATTTACAT 57.207 29.630 0.00 0.00 0.00 2.29
294 295 9.051679 CAGATATATTGTTTCGGACCATTTACA 57.948 33.333 0.00 0.00 0.00 2.41
295 296 8.015658 GCAGATATATTGTTTCGGACCATTTAC 58.984 37.037 0.00 0.00 0.00 2.01
296 297 7.717436 TGCAGATATATTGTTTCGGACCATTTA 59.283 33.333 0.00 0.00 0.00 1.40
297 298 6.545666 TGCAGATATATTGTTTCGGACCATTT 59.454 34.615 0.00 0.00 0.00 2.32
298 299 6.061441 TGCAGATATATTGTTTCGGACCATT 58.939 36.000 0.00 0.00 0.00 3.16
299 300 5.620206 TGCAGATATATTGTTTCGGACCAT 58.380 37.500 0.00 0.00 0.00 3.55
300 301 5.029807 TGCAGATATATTGTTTCGGACCA 57.970 39.130 0.00 0.00 0.00 4.02
301 302 5.700832 TCATGCAGATATATTGTTTCGGACC 59.299 40.000 0.00 0.00 0.00 4.46
302 303 6.785488 TCATGCAGATATATTGTTTCGGAC 57.215 37.500 0.00 0.00 0.00 4.79
303 304 7.160726 TCATCATGCAGATATATTGTTTCGGA 58.839 34.615 0.00 0.00 34.43 4.55
304 305 7.368480 TCATCATGCAGATATATTGTTTCGG 57.632 36.000 0.00 0.00 34.43 4.30
305 306 8.284693 TGTTCATCATGCAGATATATTGTTTCG 58.715 33.333 0.00 0.00 34.43 3.46
306 307 9.955208 TTGTTCATCATGCAGATATATTGTTTC 57.045 29.630 0.00 0.00 34.43 2.78
312 313 8.913487 TGTTCTTGTTCATCATGCAGATATAT 57.087 30.769 0.00 0.00 34.43 0.86
319 320 4.915158 TGTTGTTCTTGTTCATCATGCA 57.085 36.364 0.00 0.00 0.00 3.96
364 365 9.895138 AATTATGCATTCCTTAGCTTTTTCAAT 57.105 25.926 3.54 0.00 0.00 2.57
371 372 8.525290 ACTGTAAATTATGCATTCCTTAGCTT 57.475 30.769 3.54 0.00 0.00 3.74
401 402 4.497340 GCAACAGGTGATCAAAACTTTCGA 60.497 41.667 0.00 0.00 0.00 3.71
427 428 5.496556 ACGTATTGATTGGGTCAGATCAAA 58.503 37.500 0.00 0.00 43.27 2.69
442 443 7.972832 AAACCTTCAGTATCAAACGTATTGA 57.027 32.000 13.12 13.12 0.00 2.57
457 458 5.969435 GGAAAAGTCACGTTTAAACCTTCAG 59.031 40.000 12.66 1.01 0.00 3.02
519 520 3.554934 TCTGGCATATCCGCTGAAAAAT 58.445 40.909 0.00 0.00 37.80 1.82
534 535 1.271379 GCTTACAACTCCCTTCTGGCA 60.271 52.381 0.00 0.00 0.00 4.92
535 536 1.454201 GCTTACAACTCCCTTCTGGC 58.546 55.000 0.00 0.00 0.00 4.85
536 537 1.002087 ACGCTTACAACTCCCTTCTGG 59.998 52.381 0.00 0.00 0.00 3.86
537 538 2.338500 GACGCTTACAACTCCCTTCTG 58.662 52.381 0.00 0.00 0.00 3.02
588 594 2.985139 GTCTGTTCGAACCTAAAGTCGG 59.015 50.000 24.78 3.33 0.00 4.79
591 597 3.317430 AGTCGTCTGTTCGAACCTAAAGT 59.683 43.478 24.78 7.44 41.47 2.66
666 672 6.055588 GGCTGCAGATAAATGGTTAAGAGTA 58.944 40.000 20.43 0.00 0.00 2.59
692 698 3.559069 ACAAGATATCACCCTGCCATTG 58.441 45.455 5.32 0.09 0.00 2.82
700 706 6.295719 ACGGGATATAACAAGATATCACCC 57.704 41.667 5.32 0.00 38.50 4.61
764 770 1.134848 GCATTAAAATGGAGGCGGCAA 60.135 47.619 13.08 0.00 36.90 4.52
812 819 7.337184 TGTGTCACTCTTATCTTAGTCGATCTT 59.663 37.037 4.27 0.00 0.00 2.40
873 885 1.724582 GGCGTTTGAACAGCACTGGT 61.725 55.000 2.21 0.00 32.69 4.00
979 992 3.186047 CTGCGCGGAGGTTTACGG 61.186 66.667 21.08 0.00 0.00 4.02
1080 1099 0.391661 GCTTGACTCTGATGGCGGAA 60.392 55.000 0.00 0.00 0.00 4.30
1114 1133 1.102978 GGTGGCGATGGCTTAACAAT 58.897 50.000 0.00 0.00 39.81 2.71
1229 1293 2.048603 GGGTTGCTGATCACTGGGC 61.049 63.158 0.00 0.00 0.00 5.36
1278 1342 2.202987 CTGATCACTGGGCTCGGC 60.203 66.667 0.00 0.00 0.00 5.54
1279 1343 2.202987 GCTGATCACTGGGCTCGG 60.203 66.667 0.00 0.00 0.00 4.63
1410 1474 2.438975 CCCATGCATGGCGTCAGT 60.439 61.111 36.08 0.00 46.70 3.41
1624 1688 1.506309 TTACTGGCGCACTGTGCAAG 61.506 55.000 29.86 24.09 45.36 4.01
1629 1693 0.321671 ATGACTTACTGGCGCACTGT 59.678 50.000 10.83 11.42 35.29 3.55
1679 1743 9.770097 TCACAAAATAACAATGCCAAAAATAGA 57.230 25.926 0.00 0.00 0.00 1.98
1700 1764 2.746904 CGGTCATGCAGGTAATTCACAA 59.253 45.455 0.00 0.00 0.00 3.33
1701 1765 2.355197 CGGTCATGCAGGTAATTCACA 58.645 47.619 0.00 0.00 0.00 3.58
1702 1766 1.670811 CCGGTCATGCAGGTAATTCAC 59.329 52.381 0.00 0.00 0.00 3.18
1703 1767 1.557371 TCCGGTCATGCAGGTAATTCA 59.443 47.619 0.00 0.00 33.92 2.57
1704 1768 2.213499 CTCCGGTCATGCAGGTAATTC 58.787 52.381 0.00 0.00 33.92 2.17
1705 1769 1.134098 CCTCCGGTCATGCAGGTAATT 60.134 52.381 0.00 0.00 33.92 1.40
1706 1770 0.469917 CCTCCGGTCATGCAGGTAAT 59.530 55.000 0.00 0.00 33.92 1.89
1707 1771 0.616395 TCCTCCGGTCATGCAGGTAA 60.616 55.000 0.00 0.00 33.92 2.85
1708 1772 0.616395 TTCCTCCGGTCATGCAGGTA 60.616 55.000 0.00 0.00 33.92 3.08
1709 1773 1.903877 CTTCCTCCGGTCATGCAGGT 61.904 60.000 0.00 0.00 33.92 4.00
1710 1774 1.153289 CTTCCTCCGGTCATGCAGG 60.153 63.158 0.00 0.00 0.00 4.85
1711 1775 0.467384 ATCTTCCTCCGGTCATGCAG 59.533 55.000 0.00 0.00 0.00 4.41
1712 1776 0.911769 AATCTTCCTCCGGTCATGCA 59.088 50.000 0.00 0.00 0.00 3.96
1719 1783 5.391312 ACAAAAATTCAATCTTCCTCCGG 57.609 39.130 0.00 0.00 0.00 5.14
1720 1784 5.088739 CGACAAAAATTCAATCTTCCTCCG 58.911 41.667 0.00 0.00 0.00 4.63
1727 1791 9.559958 GTCATAACATCGACAAAAATTCAATCT 57.440 29.630 0.00 0.00 32.24 2.40
1734 1800 5.323900 CGCTGTCATAACATCGACAAAAAT 58.676 37.500 0.00 0.00 45.40 1.82
1743 1809 1.276844 GCGCCGCTGTCATAACATC 59.723 57.895 0.00 0.00 34.13 3.06
1790 1856 3.092511 GGAGATGGGGCTGCTGGA 61.093 66.667 0.00 0.00 0.00 3.86
1805 1871 4.559300 CGAAGGAAACGGTAGTTACTTGGA 60.559 45.833 0.00 0.00 40.18 3.53
1827 1893 5.567138 ATTTAGTGAAGGCAGAATTTCCG 57.433 39.130 0.00 0.00 0.00 4.30
1867 1933 7.438459 GGATCATACGACAAATTAACACTAGCT 59.562 37.037 0.00 0.00 0.00 3.32
1893 1960 3.740044 AAAAACACGTGTCAGACTGTG 57.260 42.857 23.61 19.15 36.08 3.66
1918 1985 2.470990 TGGCTCTGCAAAGGATAGAGA 58.529 47.619 0.00 0.00 40.21 3.10
1919 1986 2.996249 TGGCTCTGCAAAGGATAGAG 57.004 50.000 0.00 0.00 40.63 2.43
1920 1987 2.773661 TCATGGCTCTGCAAAGGATAGA 59.226 45.455 0.00 0.00 0.00 1.98
1921 1988 2.877168 GTCATGGCTCTGCAAAGGATAG 59.123 50.000 0.00 0.00 0.00 2.08
1922 1989 2.507058 AGTCATGGCTCTGCAAAGGATA 59.493 45.455 0.00 0.00 0.00 2.59
1923 1990 1.284198 AGTCATGGCTCTGCAAAGGAT 59.716 47.619 0.00 0.00 0.00 3.24
1924 1991 0.694771 AGTCATGGCTCTGCAAAGGA 59.305 50.000 0.00 0.00 0.00 3.36
1940 2007 5.016051 TGGATCATCTTGCTTCTACAGTC 57.984 43.478 0.00 0.00 0.00 3.51
1952 2019 6.626844 CGGACTTCATATCGATGGATCATCTT 60.627 42.308 8.54 0.00 38.59 2.40
1956 2023 4.079253 TCGGACTTCATATCGATGGATCA 58.921 43.478 8.54 0.00 34.00 2.92
1981 2083 7.448161 TGTGGTTGACAACTAATTCATCATCTT 59.552 33.333 17.52 0.00 0.00 2.40
2003 2105 3.194968 ACCGAAACTAGTGGAGTATGTGG 59.805 47.826 4.80 0.00 37.44 4.17
2004 2106 4.451629 ACCGAAACTAGTGGAGTATGTG 57.548 45.455 4.80 0.00 37.44 3.21
2013 2118 6.949352 TCCCTAACTATACCGAAACTAGTG 57.051 41.667 0.00 0.00 0.00 2.74
2015 2120 9.512588 TCTTATCCCTAACTATACCGAAACTAG 57.487 37.037 0.00 0.00 0.00 2.57
2064 2171 4.331443 CGCCAGCACACAACATAGTATAAA 59.669 41.667 0.00 0.00 0.00 1.40
2073 2180 1.535028 CTAAATCGCCAGCACACAACA 59.465 47.619 0.00 0.00 0.00 3.33
2074 2181 1.804151 TCTAAATCGCCAGCACACAAC 59.196 47.619 0.00 0.00 0.00 3.32
2075 2182 2.177394 TCTAAATCGCCAGCACACAA 57.823 45.000 0.00 0.00 0.00 3.33
2130 2237 7.384932 TCACCGCATATATACAGTGATGAAAAG 59.615 37.037 0.00 0.00 29.75 2.27
2137 2244 5.975693 TGATCACCGCATATATACAGTGA 57.024 39.130 4.78 4.78 38.49 3.41
2138 2245 8.877808 ATATTGATCACCGCATATATACAGTG 57.122 34.615 0.00 0.00 0.00 3.66
2180 2287 5.441614 GCATATAGACACTTACGAATTCGCG 60.442 44.000 27.03 17.45 44.43 5.87
2218 2325 4.947147 TCCAACACGCAGGGGCAC 62.947 66.667 0.00 0.00 41.24 5.01
2219 2326 3.918253 GATCCAACACGCAGGGGCA 62.918 63.158 0.00 0.00 41.24 5.36
2220 2327 3.134127 GATCCAACACGCAGGGGC 61.134 66.667 0.00 0.00 0.00 5.80
2221 2328 1.746615 CTGATCCAACACGCAGGGG 60.747 63.158 0.00 0.00 0.00 4.79
2230 2337 5.633830 TTTGAATCAAGAGCTGATCCAAC 57.366 39.130 0.00 0.00 44.43 3.77
2245 2352 9.570488 CTGAAAGAGGAAGAAATGATTTGAATC 57.430 33.333 0.00 0.00 34.07 2.52
2246 2353 9.086758 ACTGAAAGAGGAAGAAATGATTTGAAT 57.913 29.630 0.00 0.00 37.43 2.57
2252 2359 7.176340 CCTGAAACTGAAAGAGGAAGAAATGAT 59.824 37.037 0.00 0.00 37.43 2.45
2253 2360 6.488006 CCTGAAACTGAAAGAGGAAGAAATGA 59.512 38.462 0.00 0.00 37.43 2.57
2254 2361 6.488006 TCCTGAAACTGAAAGAGGAAGAAATG 59.512 38.462 0.00 0.00 31.04 2.32
2255 2362 6.605119 TCCTGAAACTGAAAGAGGAAGAAAT 58.395 36.000 0.00 0.00 31.04 2.17
2258 2365 4.503991 GCTCCTGAAACTGAAAGAGGAAGA 60.504 45.833 0.00 0.00 33.40 2.87
2259 2366 3.750652 GCTCCTGAAACTGAAAGAGGAAG 59.249 47.826 0.00 0.00 33.40 3.46
2322 2429 1.060937 CGTTCGTAGCCTGCAATGC 59.939 57.895 0.00 0.00 0.00 3.56
2323 2430 1.060937 GCGTTCGTAGCCTGCAATG 59.939 57.895 0.00 0.00 0.00 2.82
2373 2500 5.248640 TCTAGCATCCACCTCAAAGAAAAG 58.751 41.667 0.00 0.00 0.00 2.27
2374 2501 5.241403 TCTAGCATCCACCTCAAAGAAAA 57.759 39.130 0.00 0.00 0.00 2.29
2375 2502 4.836825 CTCTAGCATCCACCTCAAAGAAA 58.163 43.478 0.00 0.00 0.00 2.52
2376 2503 3.369892 GCTCTAGCATCCACCTCAAAGAA 60.370 47.826 0.00 0.00 41.59 2.52
2377 2504 2.169352 GCTCTAGCATCCACCTCAAAGA 59.831 50.000 0.00 0.00 41.59 2.52
2378 2505 2.559440 GCTCTAGCATCCACCTCAAAG 58.441 52.381 0.00 0.00 41.59 2.77
2379 2506 1.210478 GGCTCTAGCATCCACCTCAAA 59.790 52.381 4.07 0.00 44.36 2.69
2380 2507 0.833287 GGCTCTAGCATCCACCTCAA 59.167 55.000 4.07 0.00 44.36 3.02
2381 2508 1.050988 GGGCTCTAGCATCCACCTCA 61.051 60.000 4.07 0.00 44.36 3.86
2382 2509 1.050988 TGGGCTCTAGCATCCACCTC 61.051 60.000 4.07 0.00 44.36 3.85
2388 2515 0.807667 CACACGTGGGCTCTAGCATC 60.808 60.000 21.57 0.00 44.36 3.91
2402 2529 0.248054 GGAACAGCACACAACACACG 60.248 55.000 0.00 0.00 0.00 4.49
2427 2556 0.388649 CACGTATCATAGCGGGCCTC 60.389 60.000 0.84 0.00 0.00 4.70
2465 2594 1.690219 AAGAGACCCGGCAGGCTATG 61.690 60.000 0.00 0.00 40.58 2.23
2466 2595 1.383248 AAGAGACCCGGCAGGCTAT 60.383 57.895 0.00 0.00 40.58 2.97
2467 2596 2.038975 AAGAGACCCGGCAGGCTA 59.961 61.111 0.00 0.00 40.58 3.93
2468 2597 3.710722 CAAGAGACCCGGCAGGCT 61.711 66.667 0.00 0.00 40.58 4.58
2470 2599 3.710722 AGCAAGAGACCCGGCAGG 61.711 66.667 0.00 0.00 43.78 4.85
2471 2600 2.435586 CAGCAAGAGACCCGGCAG 60.436 66.667 0.00 0.00 0.00 4.85
2473 2602 4.785453 CCCAGCAAGAGACCCGGC 62.785 72.222 0.00 0.00 0.00 6.13
2474 2603 3.003173 TCCCAGCAAGAGACCCGG 61.003 66.667 0.00 0.00 0.00 5.73
2475 2604 2.581354 CTCCCAGCAAGAGACCCG 59.419 66.667 0.00 0.00 32.86 5.28
2476 2605 2.270527 GCTCCCAGCAAGAGACCC 59.729 66.667 2.18 0.00 41.89 4.46
2477 2606 2.125350 CGCTCCCAGCAAGAGACC 60.125 66.667 2.18 0.00 42.58 3.85
2480 2609 3.123620 GCACGCTCCCAGCAAGAG 61.124 66.667 0.00 0.00 42.58 2.85
2482 2611 2.979676 TTGCACGCTCCCAGCAAG 60.980 61.111 0.00 0.00 42.58 4.01
2483 2612 2.979676 CTTGCACGCTCCCAGCAA 60.980 61.111 0.00 0.00 42.58 3.91
2535 2668 1.080093 TCCGTCAATCGCTTTCGCT 60.080 52.632 0.00 0.00 38.35 4.93
2630 2763 4.129380 CTGCGGTTGATGAAATCCTATCA 58.871 43.478 0.00 0.00 44.73 2.15
2692 2825 1.064654 GGCCGACAGAATCAAGAATGC 59.935 52.381 0.00 0.00 0.00 3.56
2713 2846 4.770874 TAGAAACCCCGCCGCAGC 62.771 66.667 0.00 0.00 0.00 5.25
2714 2847 2.511600 CTAGAAACCCCGCCGCAG 60.512 66.667 0.00 0.00 0.00 5.18
2723 2856 1.583495 GGCAACCGCACCTAGAAACC 61.583 60.000 0.00 0.00 41.24 3.27
2760 2894 7.717568 TCCATTGCTCTTGTAGTACTCTATTC 58.282 38.462 0.00 0.00 0.00 1.75
2763 2897 7.661536 ATTCCATTGCTCTTGTAGTACTCTA 57.338 36.000 0.00 0.00 0.00 2.43
2764 2898 6.552445 ATTCCATTGCTCTTGTAGTACTCT 57.448 37.500 0.00 0.00 0.00 3.24
2765 2899 7.467623 CAAATTCCATTGCTCTTGTAGTACTC 58.532 38.462 0.00 0.00 0.00 2.59
2766 2900 7.383102 CAAATTCCATTGCTCTTGTAGTACT 57.617 36.000 0.00 0.00 0.00 2.73
2781 2915 5.231702 ACTCAAACCATTGCAAATTCCAT 57.768 34.783 1.71 0.00 36.45 3.41
2784 2918 6.601741 TCAAACTCAAACCATTGCAAATTC 57.398 33.333 1.71 0.00 36.45 2.17
2792 2926 6.697019 CGTCTCATTTTCAAACTCAAACCATT 59.303 34.615 0.00 0.00 0.00 3.16
2796 2930 5.034152 TGCGTCTCATTTTCAAACTCAAAC 58.966 37.500 0.00 0.00 0.00 2.93
2797 2931 5.034152 GTGCGTCTCATTTTCAAACTCAAA 58.966 37.500 0.00 0.00 0.00 2.69
2843 2977 5.138125 TGCAGTGGATTTTTGGAGAAATC 57.862 39.130 0.00 2.55 42.54 2.17
2844 2978 5.549742 TTGCAGTGGATTTTTGGAGAAAT 57.450 34.783 0.00 0.00 32.16 2.17
2845 2979 5.299148 CATTGCAGTGGATTTTTGGAGAAA 58.701 37.500 0.32 0.00 0.00 2.52
2847 2981 3.306225 GCATTGCAGTGGATTTTTGGAGA 60.306 43.478 11.53 0.00 0.00 3.71
2849 2983 2.633967 AGCATTGCAGTGGATTTTTGGA 59.366 40.909 11.53 0.00 0.00 3.53
2850 2984 2.997986 GAGCATTGCAGTGGATTTTTGG 59.002 45.455 11.53 0.00 0.00 3.28
2851 2985 3.678072 CAGAGCATTGCAGTGGATTTTTG 59.322 43.478 11.53 0.00 0.00 2.44
2852 2986 3.322828 ACAGAGCATTGCAGTGGATTTTT 59.677 39.130 11.53 0.00 0.00 1.94
2860 2994 1.012086 CGCATACAGAGCATTGCAGT 58.988 50.000 11.91 8.81 34.80 4.40
2866 3000 2.977914 AGTGAAACGCATACAGAGCAT 58.022 42.857 0.00 0.00 45.86 3.79
2867 3001 2.455674 AGTGAAACGCATACAGAGCA 57.544 45.000 0.00 0.00 45.86 4.26
2887 3021 9.467258 GCGTTACACATACTCTTAATATAACCA 57.533 33.333 0.00 0.00 0.00 3.67
2888 3022 8.919661 GGCGTTACACATACTCTTAATATAACC 58.080 37.037 0.00 0.00 0.00 2.85
2889 3023 8.919661 GGGCGTTACACATACTCTTAATATAAC 58.080 37.037 0.00 0.00 0.00 1.89
2890 3024 8.090214 GGGGCGTTACACATACTCTTAATATAA 58.910 37.037 0.00 0.00 0.00 0.98
2891 3025 7.309990 GGGGGCGTTACACATACTCTTAATATA 60.310 40.741 0.00 0.00 0.00 0.86
2892 3026 6.461640 GGGGCGTTACACATACTCTTAATAT 58.538 40.000 0.00 0.00 0.00 1.28
2893 3027 5.221501 GGGGGCGTTACACATACTCTTAATA 60.222 44.000 0.00 0.00 0.00 0.98
2894 3028 4.443881 GGGGGCGTTACACATACTCTTAAT 60.444 45.833 0.00 0.00 0.00 1.40
2895 3029 3.118665 GGGGGCGTTACACATACTCTTAA 60.119 47.826 0.00 0.00 0.00 1.85
2896 3030 2.431782 GGGGGCGTTACACATACTCTTA 59.568 50.000 0.00 0.00 0.00 2.10
2897 3031 1.208776 GGGGGCGTTACACATACTCTT 59.791 52.381 0.00 0.00 0.00 2.85
2898 3032 0.828677 GGGGGCGTTACACATACTCT 59.171 55.000 0.00 0.00 0.00 3.24
2899 3033 0.828677 AGGGGGCGTTACACATACTC 59.171 55.000 0.00 0.00 0.00 2.59
2900 3034 0.828677 GAGGGGGCGTTACACATACT 59.171 55.000 0.00 0.00 0.00 2.12
2901 3035 0.179065 GGAGGGGGCGTTACACATAC 60.179 60.000 0.00 0.00 0.00 2.39
2902 3036 1.339644 GGGAGGGGGCGTTACACATA 61.340 60.000 0.00 0.00 0.00 2.29
2903 3037 2.676265 GGGAGGGGGCGTTACACAT 61.676 63.158 0.00 0.00 0.00 3.21
2904 3038 3.324108 GGGAGGGGGCGTTACACA 61.324 66.667 0.00 0.00 0.00 3.72
2905 3039 3.007323 AGGGAGGGGGCGTTACAC 61.007 66.667 0.00 0.00 0.00 2.90
2906 3040 2.686106 GAGGGAGGGGGCGTTACA 60.686 66.667 0.00 0.00 0.00 2.41
2907 3041 3.846430 CGAGGGAGGGGGCGTTAC 61.846 72.222 0.00 0.00 0.00 2.50
2908 3042 4.064768 TCGAGGGAGGGGGCGTTA 62.065 66.667 0.00 0.00 0.00 3.18
2913 3047 2.043652 TAACGTCGAGGGAGGGGG 60.044 66.667 10.27 0.00 32.40 5.40
2914 3048 1.379576 ACTAACGTCGAGGGAGGGG 60.380 63.158 10.27 0.00 32.40 4.79
2915 3049 1.664321 CCACTAACGTCGAGGGAGGG 61.664 65.000 10.27 7.26 32.40 4.30
2916 3050 0.964358 ACCACTAACGTCGAGGGAGG 60.964 60.000 10.27 6.12 0.00 4.30
2917 3051 0.886563 AACCACTAACGTCGAGGGAG 59.113 55.000 10.27 8.69 0.00 4.30
2918 3052 2.198827 TAACCACTAACGTCGAGGGA 57.801 50.000 10.27 0.00 0.00 4.20
2919 3053 3.515330 ATTAACCACTAACGTCGAGGG 57.485 47.619 10.27 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.