Multiple sequence alignment - TraesCS2B01G207800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G207800 chr2B 100.000 3395 0 0 1 3395 188471714 188468320 0.000000e+00 6270.0
1 TraesCS2B01G207800 chr2B 81.868 364 35 18 2862 3198 53460955 53461314 9.280000e-71 278.0
2 TraesCS2B01G207800 chr2B 78.406 389 37 17 2948 3298 519434563 519434184 3.430000e-50 209.0
3 TraesCS2B01G207800 chr2A 92.789 3051 97 53 423 3395 140366629 140363624 0.000000e+00 4301.0
4 TraesCS2B01G207800 chr2A 85.327 443 41 5 3 421 140367151 140366709 1.450000e-118 436.0
5 TraesCS2B01G207800 chr2D 94.308 2723 77 35 626 3298 132705022 132702328 0.000000e+00 4098.0
6 TraesCS2B01G207800 chr2D 90.376 426 37 3 3 427 132705740 132705318 1.060000e-154 556.0
7 TraesCS2B01G207800 chr1A 84.669 287 26 10 2862 3134 565150100 565150382 1.550000e-68 270.0
8 TraesCS2B01G207800 chr5B 88.479 217 20 4 2862 3076 262567867 262567654 1.210000e-64 257.0
9 TraesCS2B01G207800 chr5B 88.652 141 8 1 2940 3080 708404475 708404343 7.540000e-37 165.0
10 TraesCS2B01G207800 chr5B 75.654 382 45 24 2955 3298 71162337 71161966 2.730000e-31 147.0
11 TraesCS2B01G207800 chr3B 88.479 217 20 4 2862 3076 735974086 735974299 1.210000e-64 257.0
12 TraesCS2B01G207800 chr3B 89.764 127 5 1 2944 3070 413565306 413565424 4.540000e-34 156.0
13 TraesCS2B01G207800 chr3B 86.525 141 11 1 2940 3080 461803126 461802994 7.590000e-32 148.0
14 TraesCS2B01G207800 chr7D 81.988 322 24 19 857 1176 28069200 28069489 3.380000e-60 243.0
15 TraesCS2B01G207800 chrUn 88.372 129 6 5 2950 3077 324100273 324100153 2.730000e-31 147.0
16 TraesCS2B01G207800 chr6B 96.296 54 2 0 1709 1762 130501510 130501563 4.670000e-14 89.8
17 TraesCS2B01G207800 chr6B 87.931 58 7 0 1649 1706 126525658 126525715 6.080000e-08 69.4
18 TraesCS2B01G207800 chr7B 89.062 64 5 2 1645 1706 312434120 312434057 1.010000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G207800 chr2B 188468320 188471714 3394 True 6270.0 6270 100.000 1 3395 1 chr2B.!!$R1 3394
1 TraesCS2B01G207800 chr2A 140363624 140367151 3527 True 2368.5 4301 89.058 3 3395 2 chr2A.!!$R1 3392
2 TraesCS2B01G207800 chr2D 132702328 132705740 3412 True 2327.0 4098 92.342 3 3298 2 chr2D.!!$R1 3295

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
378 405 0.030504 CACAATGTCAACTTGCGCCA 59.969 50.0 4.18 0.0 0.00 5.69 F
386 413 0.597568 CAACTTGCGCCATTCCTTCA 59.402 50.0 4.18 0.0 0.00 3.02 F
1860 2027 0.107654 GAAGGACCAGCCATTACGCT 60.108 55.0 0.00 0.0 40.65 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1488 1649 1.064314 TCTTCCTCCTCCTCCTTCTCG 60.064 57.143 0.0 0.0 0.0 4.04 R
2257 2430 2.344203 CGTCGGAGGAGAAGGCAGT 61.344 63.158 0.0 0.0 0.0 4.40 R
3281 3516 0.941463 CTCGCTCGCTCGCCATAAAT 60.941 55.000 0.0 0.0 0.0 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.360144 AGGATGTCTACACGTTGCTTATAGT 59.640 40.000 0.00 0.00 0.00 2.12
84 85 4.463186 AGAAACCTCACAGCTATTACTCGT 59.537 41.667 0.00 0.00 0.00 4.18
95 96 3.244579 GCTATTACTCGTTGGGTAAAGCG 59.755 47.826 0.00 0.00 33.67 4.68
100 101 2.257034 CTCGTTGGGTAAAGCGAGTAC 58.743 52.381 0.00 0.00 43.79 2.73
144 145 2.993899 CGGACTAGCTTGATTTGTCGTT 59.006 45.455 1.04 0.00 0.00 3.85
159 160 1.865340 GTCGTTGAAGTCCTTGTGACC 59.135 52.381 0.00 0.00 45.68 4.02
208 210 3.116300 TCGCTCGAGCTCAAATCATTAC 58.884 45.455 32.88 1.85 39.32 1.89
224 226 4.807443 TCATTACGTGACGATGGTTGTAA 58.193 39.130 13.70 0.00 0.00 2.41
281 306 8.912787 ACAAGCTATATACACATCGCTATAAC 57.087 34.615 0.00 0.00 0.00 1.89
290 315 5.292765 ACACATCGCTATAACTTCATCCTG 58.707 41.667 0.00 0.00 0.00 3.86
301 326 0.184692 TTCATCCTGGCAACACCACA 59.815 50.000 0.00 0.00 46.36 4.17
326 351 2.038952 TGTGCAAGCAAGACCATCTACT 59.961 45.455 0.00 0.00 0.00 2.57
327 354 2.675348 GTGCAAGCAAGACCATCTACTC 59.325 50.000 0.00 0.00 0.00 2.59
352 379 5.782893 TTTTTCGTTGGAATTGACCATCT 57.217 34.783 0.00 0.00 39.82 2.90
370 397 4.436050 CCATCTACGCTTCACAATGTCAAC 60.436 45.833 0.00 0.00 0.00 3.18
375 402 2.046313 GCTTCACAATGTCAACTTGCG 58.954 47.619 0.00 0.00 0.00 4.85
377 404 0.310543 TCACAATGTCAACTTGCGCC 59.689 50.000 4.18 0.00 0.00 6.53
378 405 0.030504 CACAATGTCAACTTGCGCCA 59.969 50.000 4.18 0.00 0.00 5.69
386 413 0.597568 CAACTTGCGCCATTCCTTCA 59.402 50.000 4.18 0.00 0.00 3.02
401 428 1.202348 CCTTCAACCCCGAAGAATTGC 59.798 52.381 2.30 0.00 44.32 3.56
416 443 0.814010 ATTGCGTGGGCTATCCGAAC 60.814 55.000 0.00 0.00 40.82 3.95
421 526 1.129811 CGTGGGCTATCCGAACAAAAC 59.870 52.381 0.00 0.00 38.76 2.43
427 532 4.500035 GGGCTATCCGAACAAAACAAAACA 60.500 41.667 0.00 0.00 0.00 2.83
457 562 2.969628 ATCACTGGTGCTGCTACTAC 57.030 50.000 0.00 0.00 0.00 2.73
475 580 6.520104 GCTACTACGCAAGAAAATCTTTGAAC 59.480 38.462 0.00 0.00 33.78 3.18
476 581 6.371809 ACTACGCAAGAAAATCTTTGAACA 57.628 33.333 0.00 0.00 33.78 3.18
479 584 7.920682 ACTACGCAAGAAAATCTTTGAACAAAT 59.079 29.630 0.44 0.00 33.78 2.32
480 585 9.393249 CTACGCAAGAAAATCTTTGAACAAATA 57.607 29.630 0.44 0.00 33.78 1.40
481 586 8.816640 ACGCAAGAAAATCTTTGAACAAATAT 57.183 26.923 0.44 0.00 33.78 1.28
482 587 9.260002 ACGCAAGAAAATCTTTGAACAAATATT 57.740 25.926 0.44 3.36 33.78 1.28
483 588 9.731519 CGCAAGAAAATCTTTGAACAAATATTC 57.268 29.630 9.93 8.04 33.78 1.75
658 789 3.223589 GTGTGGGTGTGGGGTTGC 61.224 66.667 0.00 0.00 0.00 4.17
943 1079 1.316266 CCCATCCCCACTCTCCTCT 59.684 63.158 0.00 0.00 0.00 3.69
981 1117 1.059994 CGACATCGCTGCTTCTTGC 59.940 57.895 0.00 0.00 43.25 4.01
982 1118 1.357258 CGACATCGCTGCTTCTTGCT 61.357 55.000 0.00 0.00 43.37 3.91
1014 1154 4.856801 ATCATGGACGCCGTGGGC 62.857 66.667 15.22 0.00 46.75 5.36
1296 1439 2.444895 GAGGAGGATCAGGGCGGT 60.445 66.667 0.00 0.00 36.25 5.68
1566 1733 4.415150 CCGGTGGCTGTGATGGCT 62.415 66.667 0.00 0.00 0.00 4.75
1699 1866 3.748071 CTGATGCTCTCGCGCGACT 62.748 63.158 31.40 11.12 39.65 4.18
1860 2027 0.107654 GAAGGACCAGCCATTACGCT 60.108 55.000 0.00 0.00 40.65 5.07
2157 2330 1.803366 GCAGCAACAAGAAGCCAGCT 61.803 55.000 0.00 0.00 31.92 4.24
2257 2430 0.179094 GTCCCACATAATCGCCGACA 60.179 55.000 0.00 0.00 0.00 4.35
2259 2432 0.179084 CCCACATAATCGCCGACACT 60.179 55.000 0.00 0.00 0.00 3.55
2403 2582 3.706373 GAGGCCTGAACCCGAGCA 61.706 66.667 12.00 0.00 0.00 4.26
2572 2759 5.705400 AGAATCTTCCAAGAAAGAAACCCA 58.295 37.500 0.00 0.00 38.69 4.51
2573 2760 6.136155 AGAATCTTCCAAGAAAGAAACCCAA 58.864 36.000 0.00 0.00 38.69 4.12
2574 2761 6.266330 AGAATCTTCCAAGAAAGAAACCCAAG 59.734 38.462 0.00 0.00 38.69 3.61
2614 2804 2.659428 TCAGAGAAGCCATCGATCTCA 58.341 47.619 13.84 0.00 41.60 3.27
2629 2819 4.402474 TCGATCTCAGCATTCAGGTTCTTA 59.598 41.667 0.00 0.00 0.00 2.10
2630 2820 5.105351 TCGATCTCAGCATTCAGGTTCTTAA 60.105 40.000 0.00 0.00 0.00 1.85
2631 2821 5.757320 CGATCTCAGCATTCAGGTTCTTAAT 59.243 40.000 0.00 0.00 0.00 1.40
2905 3110 3.491447 GCTTTGCTAATTGCTACCCATGG 60.491 47.826 4.14 4.14 43.37 3.66
2945 3150 2.081462 GTACTGAACCCCCGTGAATTG 58.919 52.381 0.00 0.00 0.00 2.32
3028 3237 0.540923 ACTGAGATCTCCAGCAAGCC 59.459 55.000 20.03 0.00 35.14 4.35
3059 3268 0.249155 GCTTTGCTTCAGTTGCTGCA 60.249 50.000 0.00 0.00 0.00 4.41
3084 3293 0.394192 AGTACAGCAGCAGCACTCAA 59.606 50.000 3.17 0.00 45.49 3.02
3095 3304 4.069869 CACTCAACCTGGTGCCTG 57.930 61.111 0.00 0.00 0.00 4.85
3116 3329 1.347707 TGACTGACAGGGTGACAATCC 59.652 52.381 7.51 0.00 0.00 3.01
3249 3483 2.288825 GCTGAAGCACACTGTACTGGTA 60.289 50.000 4.66 0.00 41.59 3.25
3281 3516 5.001232 GGTTAGCACAGTGGAGAACAAATA 58.999 41.667 1.84 0.00 0.00 1.40
3288 3523 6.974622 GCACAGTGGAGAACAAATATTTATGG 59.025 38.462 1.84 0.00 0.00 2.74
3290 3525 6.183360 ACAGTGGAGAACAAATATTTATGGCG 60.183 38.462 0.00 0.00 0.00 5.69
3291 3526 6.038161 CAGTGGAGAACAAATATTTATGGCGA 59.962 38.462 0.00 0.00 0.00 5.54
3292 3527 6.260936 AGTGGAGAACAAATATTTATGGCGAG 59.739 38.462 0.00 0.00 0.00 5.03
3293 3528 5.008613 TGGAGAACAAATATTTATGGCGAGC 59.991 40.000 0.00 0.00 0.00 5.03
3298 3533 1.350193 ATATTTATGGCGAGCGAGCG 58.650 50.000 0.00 0.00 38.18 5.03
3331 3566 1.992233 GCGTGGTGGCATGTGGTATG 61.992 60.000 0.00 0.00 0.00 2.39
3334 3569 0.925558 TGGTGGCATGTGGTATGGAT 59.074 50.000 0.00 0.00 0.00 3.41
3335 3570 1.321474 GGTGGCATGTGGTATGGATG 58.679 55.000 0.00 0.00 0.00 3.51
3336 3571 0.670162 GTGGCATGTGGTATGGATGC 59.330 55.000 0.00 0.00 41.51 3.91
3337 3572 0.258194 TGGCATGTGGTATGGATGCA 59.742 50.000 0.00 0.00 43.58 3.96
3338 3573 0.956633 GGCATGTGGTATGGATGCAG 59.043 55.000 0.00 0.00 43.58 4.41
3368 3603 0.739112 GCCTTGCTTCTCACTCTCCG 60.739 60.000 0.00 0.00 0.00 4.63
3372 3607 1.621992 TGCTTCTCACTCTCCGTTCT 58.378 50.000 0.00 0.00 0.00 3.01
3373 3608 2.791655 TGCTTCTCACTCTCCGTTCTA 58.208 47.619 0.00 0.00 0.00 2.10
3374 3609 2.750166 TGCTTCTCACTCTCCGTTCTAG 59.250 50.000 0.00 0.00 0.00 2.43
3375 3610 2.750712 GCTTCTCACTCTCCGTTCTAGT 59.249 50.000 0.00 0.00 0.00 2.57
3376 3611 3.940221 GCTTCTCACTCTCCGTTCTAGTA 59.060 47.826 0.00 0.00 0.00 1.82
3377 3612 4.201841 GCTTCTCACTCTCCGTTCTAGTAC 60.202 50.000 0.00 0.00 0.00 2.73
3378 3613 4.822685 TCTCACTCTCCGTTCTAGTACT 57.177 45.455 0.00 0.00 0.00 2.73
3379 3614 5.929058 TCTCACTCTCCGTTCTAGTACTA 57.071 43.478 1.89 1.89 0.00 1.82
3380 3615 5.904941 TCTCACTCTCCGTTCTAGTACTAG 58.095 45.833 21.87 21.87 34.56 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.357918 AGACATCCTAGCACAACAAAGT 57.642 40.909 0.00 0.00 0.00 2.66
1 2 5.120830 GTGTAGACATCCTAGCACAACAAAG 59.879 44.000 0.00 0.00 33.51 2.77
12 13 5.847111 ATAAGCAACGTGTAGACATCCTA 57.153 39.130 0.00 0.00 0.00 2.94
84 85 5.409214 GTGTTAATGTACTCGCTTTACCCAA 59.591 40.000 0.00 0.00 0.00 4.12
122 123 2.230508 ACGACAAATCAAGCTAGTCCGA 59.769 45.455 0.00 0.00 0.00 4.55
124 125 3.994392 TCAACGACAAATCAAGCTAGTCC 59.006 43.478 0.00 0.00 0.00 3.85
138 139 2.546778 GTCACAAGGACTTCAACGACA 58.453 47.619 0.00 0.00 43.46 4.35
144 145 1.410004 AGACGGTCACAAGGACTTCA 58.590 50.000 11.27 0.00 46.16 3.02
159 160 2.285827 AGCGAGGAGAAATGAAGACG 57.714 50.000 0.00 0.00 0.00 4.18
208 210 7.224290 TGTTATATTTACAACCATCGTCACG 57.776 36.000 0.00 0.00 0.00 4.35
281 306 3.344703 TGGTGTTGCCAGGATGAAG 57.655 52.632 0.00 0.00 43.61 3.02
301 326 4.275810 AGATGGTCTTGCTTGCACATAAT 58.724 39.130 0.00 0.00 0.00 1.28
333 360 3.930229 CGTAGATGGTCAATTCCAACGAA 59.070 43.478 3.86 0.00 39.86 3.85
334 361 3.517602 CGTAGATGGTCAATTCCAACGA 58.482 45.455 3.86 0.00 39.86 3.85
335 362 2.030457 GCGTAGATGGTCAATTCCAACG 59.970 50.000 5.10 5.10 41.09 4.10
336 363 3.270877 AGCGTAGATGGTCAATTCCAAC 58.729 45.455 0.00 0.00 41.09 3.77
338 365 3.055458 TGAAGCGTAGATGGTCAATTCCA 60.055 43.478 0.00 0.00 42.01 3.53
339 366 3.309954 GTGAAGCGTAGATGGTCAATTCC 59.690 47.826 0.00 0.00 0.00 3.01
340 367 3.932710 TGTGAAGCGTAGATGGTCAATTC 59.067 43.478 0.00 0.00 0.00 2.17
352 379 3.303725 GCAAGTTGACATTGTGAAGCGTA 60.304 43.478 7.16 0.00 0.00 4.42
370 397 0.109132 GGTTGAAGGAATGGCGCAAG 60.109 55.000 10.83 0.00 43.44 4.01
375 402 0.610785 TTCGGGGTTGAAGGAATGGC 60.611 55.000 0.00 0.00 0.00 4.40
377 404 2.489938 TCTTCGGGGTTGAAGGAATG 57.510 50.000 3.89 0.00 44.38 2.67
378 405 3.739401 ATTCTTCGGGGTTGAAGGAAT 57.261 42.857 3.89 1.15 44.38 3.01
386 413 1.241315 CCACGCAATTCTTCGGGGTT 61.241 55.000 4.81 0.00 43.80 4.11
401 428 1.129811 GTTTTGTTCGGATAGCCCACG 59.870 52.381 0.00 0.00 34.14 4.94
421 526 8.977505 CACCAGTGATTAATAGGTTTTGTTTTG 58.022 33.333 0.00 0.00 0.00 2.44
427 532 5.105756 GCAGCACCAGTGATTAATAGGTTTT 60.106 40.000 0.99 0.00 0.00 2.43
441 546 1.215647 GCGTAGTAGCAGCACCAGT 59.784 57.895 0.00 0.00 37.05 4.00
457 562 9.731519 GAATATTTGTTCAAAGATTTTCTTGCG 57.268 29.630 15.81 0.00 36.71 4.85
513 618 4.443621 TCACCGTTCATGCCGAATATTTA 58.556 39.130 6.23 0.00 35.63 1.40
559 664 3.378112 CAGATGTGCCGGTCAAACATTAT 59.622 43.478 1.90 0.00 34.74 1.28
560 665 2.746904 CAGATGTGCCGGTCAAACATTA 59.253 45.455 1.90 0.00 34.74 1.90
616 721 1.003112 AGAGAGAGAGTCGCCGTGT 60.003 57.895 0.00 0.00 0.00 4.49
658 789 1.099689 ACAAACAAACTGACACCCCG 58.900 50.000 0.00 0.00 0.00 5.73
928 1064 2.688477 GATCAAGAGGAGAGTGGGGAT 58.312 52.381 0.00 0.00 0.00 3.85
962 1098 1.354337 GCAAGAAGCAGCGATGTCGA 61.354 55.000 1.22 0.00 44.79 4.20
1077 1220 3.121030 CCGCACGAGAAGCCCTTG 61.121 66.667 0.00 0.00 0.00 3.61
1488 1649 1.064314 TCTTCCTCCTCCTCCTTCTCG 60.064 57.143 0.00 0.00 0.00 4.04
1860 2027 3.760035 GGCGAGGCGGAGTTGAGA 61.760 66.667 0.00 0.00 0.00 3.27
2257 2430 2.344203 CGTCGGAGGAGAAGGCAGT 61.344 63.158 0.00 0.00 0.00 4.40
2259 2432 3.068691 CCGTCGGAGGAGAAGGCA 61.069 66.667 4.91 0.00 33.37 4.75
2542 2727 6.934056 TCTTTCTTGGAAGATTCTCTCTCTG 58.066 40.000 0.00 0.00 34.49 3.35
2572 2759 7.069331 TCTGAACTCTGAACTCTTCTTCTTCTT 59.931 37.037 0.00 0.00 0.00 2.52
2573 2760 6.549364 TCTGAACTCTGAACTCTTCTTCTTCT 59.451 38.462 0.00 0.00 0.00 2.85
2574 2761 6.744112 TCTGAACTCTGAACTCTTCTTCTTC 58.256 40.000 0.00 0.00 0.00 2.87
2614 2804 9.920946 TTTCCTAATATTAAGAACCTGAATGCT 57.079 29.630 6.09 0.00 0.00 3.79
2787 2982 7.039223 AGGAAATAAACTATGACGACCGGATAT 60.039 37.037 9.46 0.00 0.00 1.63
2792 2992 5.233689 GGAAGGAAATAAACTATGACGACCG 59.766 44.000 0.00 0.00 0.00 4.79
2825 3025 5.197224 TGACCAAATCTCCATCCAGAAAT 57.803 39.130 0.00 0.00 0.00 2.17
2829 3029 2.621998 GCATGACCAAATCTCCATCCAG 59.378 50.000 0.00 0.00 0.00 3.86
2945 3150 1.839424 AAGGTTAGCATTGACCCAGC 58.161 50.000 0.00 0.00 36.57 4.85
3084 3293 1.766059 TCAGTCACAGGCACCAGGT 60.766 57.895 0.00 0.00 0.00 4.00
3095 3304 2.417719 GATTGTCACCCTGTCAGTCAC 58.582 52.381 0.00 0.00 0.00 3.67
3116 3329 1.522580 GGCTTAGCTTCTCCTGGCG 60.523 63.158 3.59 0.00 0.00 5.69
3234 3465 5.880054 ATCATTTTACCAGTACAGTGTGC 57.120 39.130 5.88 4.24 0.00 4.57
3249 3483 4.832266 TCCACTGTGCTAACCAATCATTTT 59.168 37.500 1.29 0.00 0.00 1.82
3281 3516 0.941463 CTCGCTCGCTCGCCATAAAT 60.941 55.000 0.00 0.00 0.00 1.40
3290 3525 2.965999 ATGCATGCTCGCTCGCTC 60.966 61.111 20.33 0.00 0.00 5.03
3291 3526 3.270092 CATGCATGCTCGCTCGCT 61.270 61.111 20.33 0.00 0.00 4.93
3292 3527 3.570638 ACATGCATGCTCGCTCGC 61.571 61.111 26.53 0.00 0.00 5.03
3293 3528 2.323447 CACATGCATGCTCGCTCG 59.677 61.111 26.53 0.29 0.00 5.03
3331 3566 1.812922 CTCGTCCTGCACTGCATCC 60.813 63.158 3.64 0.00 38.13 3.51
3334 3569 4.687215 GGCTCGTCCTGCACTGCA 62.687 66.667 3.11 3.11 36.92 4.41
3335 3570 3.890936 AAGGCTCGTCCTGCACTGC 62.891 63.158 0.00 0.00 46.94 4.40
3336 3571 2.031516 CAAGGCTCGTCCTGCACTG 61.032 63.158 0.00 0.00 46.94 3.66
3337 3572 2.345244 CAAGGCTCGTCCTGCACT 59.655 61.111 0.00 0.00 46.94 4.40
3338 3573 3.426568 GCAAGGCTCGTCCTGCAC 61.427 66.667 3.33 0.00 46.94 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.