Multiple sequence alignment - TraesCS2B01G207600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G207600 chr2B 100.000 5866 0 0 2017 7882 188260421 188254556 0.000000e+00 10833.0
1 TraesCS2B01G207600 chr2B 96.790 2897 71 2 2052 4934 629343645 629346533 0.000000e+00 4815.0
2 TraesCS2B01G207600 chr2B 100.000 1778 0 0 1 1778 188262437 188260660 0.000000e+00 3284.0
3 TraesCS2B01G207600 chr2B 96.566 1689 22 9 6207 7882 188149956 188148291 0.000000e+00 2765.0
4 TraesCS2B01G207600 chr2B 99.236 1309 4 2 1 1309 188151830 188150528 0.000000e+00 2357.0
5 TraesCS2B01G207600 chr2B 97.730 881 16 2 4944 5823 629346777 629347654 0.000000e+00 1513.0
6 TraesCS2B01G207600 chr2B 98.771 814 8 1 6 819 188023696 188022885 0.000000e+00 1447.0
7 TraesCS2B01G207600 chr2B 96.290 620 10 3 6594 7200 188021294 188020675 0.000000e+00 1005.0
8 TraesCS2B01G207600 chr2B 98.571 490 7 0 820 1309 188022823 188022334 0.000000e+00 867.0
9 TraesCS2B01G207600 chr2B 98.387 372 5 1 5836 6207 629347583 629347953 0.000000e+00 652.0
10 TraesCS2B01G207600 chr2B 100.000 284 0 0 1495 1778 188022341 188022058 7.010000e-145 525.0
11 TraesCS2B01G207600 chr2B 100.000 284 0 0 1495 1778 188150535 188150252 7.010000e-145 525.0
12 TraesCS2B01G207600 chr2B 98.522 203 2 1 6403 6604 188021642 188021440 2.700000e-94 357.0
13 TraesCS2B01G207600 chr2B 99.462 186 1 0 1310 1495 247923219 247923034 9.800000e-89 339.0
14 TraesCS2B01G207600 chr2B 95.652 69 2 1 7474 7541 188020169 188020101 8.360000e-20 110.0
15 TraesCS2B01G207600 chr2B 100.000 34 0 0 2017 2050 188149980 188149947 6.600000e-06 63.9
16 TraesCS2B01G207600 chr2B 94.595 37 0 2 6654 6689 758534096 758534061 1.000000e-03 56.5
17 TraesCS2B01G207600 chr7A 99.514 2883 14 0 2052 4934 688208082 688205200 0.000000e+00 5247.0
18 TraesCS2B01G207600 chr7A 98.741 1271 7 2 4944 6213 688204947 688203685 0.000000e+00 2250.0
19 TraesCS2B01G207600 chr7A 94.081 321 18 1 7563 7882 441287126 441286806 3.310000e-133 486.0
20 TraesCS2B01G207600 chr7A 100.000 29 0 0 6652 6680 26026177 26026149 4.000000e-03 54.7
21 TraesCS2B01G207600 chr1A 99.237 2883 22 0 2052 4934 350419966 350417084 0.000000e+00 5203.0
22 TraesCS2B01G207600 chr1A 99.773 881 1 1 4944 5823 350416831 350415951 0.000000e+00 1615.0
23 TraesCS2B01G207600 chr1A 99.468 376 2 0 5837 6212 350416021 350415646 0.000000e+00 684.0
24 TraesCS2B01G207600 chr1A 93.769 321 19 1 7563 7882 89224419 89224099 1.540000e-131 481.0
25 TraesCS2B01G207600 chr3A 99.133 2884 19 1 2051 4934 494808871 494805994 0.000000e+00 5182.0
26 TraesCS2B01G207600 chr3A 97.969 1280 6 4 4944 6214 494805741 494804473 0.000000e+00 2202.0
27 TraesCS2B01G207600 chr3A 98.947 190 1 1 1306 1494 625241736 625241547 9.800000e-89 339.0
28 TraesCS2B01G207600 chr3A 94.891 137 7 0 6833 6969 721602982 721603118 1.720000e-51 215.0
29 TraesCS2B01G207600 chr3A 85.484 62 6 2 6350 6409 721597494 721597554 2.370000e-05 62.1
30 TraesCS2B01G207600 chr3A 100.000 29 0 0 6620 6648 167915650 167915622 4.000000e-03 54.7
31 TraesCS2B01G207600 chr5A 99.399 2662 16 0 2052 4713 414315859 414313198 0.000000e+00 4828.0
32 TraesCS2B01G207600 chr5A 96.521 2817 73 6 2052 4866 426293266 426296059 0.000000e+00 4636.0
33 TraesCS2B01G207600 chr5A 99.319 881 5 1 4944 5823 414312801 414311921 0.000000e+00 1592.0
34 TraesCS2B01G207600 chr5A 99.733 374 1 0 5837 6210 414311991 414311618 0.000000e+00 686.0
35 TraesCS2B01G207600 chr5A 96.114 386 5 3 5837 6214 426297089 426297472 8.690000e-174 621.0
36 TraesCS2B01G207600 chr5A 99.459 185 1 0 1310 1494 321925080 321925264 3.520000e-88 337.0
37 TraesCS2B01G207600 chr5A 77.644 331 62 7 852 1181 569436857 569437176 2.900000e-44 191.0
38 TraesCS2B01G207600 chr3B 96.264 2837 60 9 2051 4866 398842997 398845808 0.000000e+00 4610.0
39 TraesCS2B01G207600 chr3B 99.030 2269 8 2 2680 4934 739941505 739939237 0.000000e+00 4056.0
40 TraesCS2B01G207600 chr3B 99.659 881 2 1 4944 5823 739938976 739938096 0.000000e+00 1609.0
41 TraesCS2B01G207600 chr3B 95.987 897 11 5 4944 5823 398846040 398846928 0.000000e+00 1434.0
42 TraesCS2B01G207600 chr3B 92.899 845 30 24 2052 2879 739942178 739941347 0.000000e+00 1201.0
43 TraesCS2B01G207600 chr3B 99.734 376 0 1 5837 6211 739938166 739937791 0.000000e+00 688.0
44 TraesCS2B01G207600 chr3B 96.875 384 3 2 5837 6212 398846850 398847232 1.120000e-177 634.0
45 TraesCS2B01G207600 chr3B 83.214 697 95 11 131 817 793104034 793103350 3.120000e-173 619.0
46 TraesCS2B01G207600 chr3B 95.794 214 4 5 1306 1516 756675180 756675391 2.720000e-89 340.0
47 TraesCS2B01G207600 chr3B 98.942 189 1 1 1307 1494 689513165 689512977 3.520000e-88 337.0
48 TraesCS2B01G207600 chr3B 79.626 481 78 10 839 1306 793103261 793102788 2.120000e-85 327.0
49 TraesCS2B01G207600 chr3B 86.869 297 31 5 6675 6969 793099936 793099646 7.630000e-85 326.0
50 TraesCS2B01G207600 chr3B 85.714 77 8 2 7013 7086 793099550 793099474 2.360000e-10 78.7
51 TraesCS2B01G207600 chr1B 96.125 2839 66 10 2046 4866 647921886 647919074 0.000000e+00 4593.0
52 TraesCS2B01G207600 chr1B 96.850 889 16 3 4944 5823 647918842 647917957 0.000000e+00 1476.0
53 TraesCS2B01G207600 chr1B 96.859 382 3 2 5837 6210 647918035 647917655 1.440000e-176 630.0
54 TraesCS2B01G207600 chr6D 89.130 2539 182 43 2053 4522 313893931 313896444 0.000000e+00 3073.0
55 TraesCS2B01G207600 chr6D 87.097 62 5 3 6538 6596 26404954 26404893 5.100000e-07 67.6
56 TraesCS2B01G207600 chr6D 100.000 28 0 0 6652 6679 4268759 4268786 1.400000e-02 52.8
57 TraesCS2B01G207600 chr7B 95.028 1247 29 5 2051 3283 122296617 122295390 0.000000e+00 1929.0
58 TraesCS2B01G207600 chr7B 97.188 889 12 4 4944 5823 122293666 122292782 0.000000e+00 1491.0
59 TraesCS2B01G207600 chr7B 94.391 624 35 0 2052 2675 536767897 536767274 0.000000e+00 959.0
60 TraesCS2B01G207600 chr4D 89.071 732 77 3 90 819 86312941 86313671 0.000000e+00 905.0
61 TraesCS2B01G207600 chr4D 88.677 733 79 3 90 819 86531777 86532508 0.000000e+00 891.0
62 TraesCS2B01G207600 chr4D 87.765 425 52 0 395 819 5369287 5369711 1.530000e-136 497.0
63 TraesCS2B01G207600 chr4D 94.393 321 17 1 7563 7882 502781400 502781080 7.110000e-135 492.0
64 TraesCS2B01G207600 chr4D 87.941 340 39 2 6237 6575 86533448 86533786 4.430000e-107 399.0
65 TraesCS2B01G207600 chr4D 87.647 340 40 2 6237 6575 86314369 86314707 2.060000e-105 394.0
66 TraesCS2B01G207600 chr4D 89.416 274 29 0 1495 1768 86314006 86314279 5.850000e-91 346.0
67 TraesCS2B01G207600 chr4D 88.931 262 29 0 1495 1756 86533067 86533328 2.740000e-84 324.0
68 TraesCS2B01G207600 chr4D 94.595 37 0 2 6652 6688 402528827 402528861 1.000000e-03 56.5
69 TraesCS2B01G207600 chr4D 100.000 28 0 0 6652 6679 337933263 337933290 1.400000e-02 52.8
70 TraesCS2B01G207600 chr4A 89.071 732 77 3 90 819 509225028 509224298 0.000000e+00 905.0
71 TraesCS2B01G207600 chr4A 90.712 323 28 2 90 411 508847832 508847511 5.650000e-116 429.0
72 TraesCS2B01G207600 chr4A 85.784 408 53 5 414 819 508838828 508838424 2.030000e-115 427.0
73 TraesCS2B01G207600 chr4A 83.402 482 59 11 840 1309 598453798 598454270 2.030000e-115 427.0
74 TraesCS2B01G207600 chr4A 88.529 340 37 2 6237 6575 509223375 509223037 2.050000e-110 411.0
75 TraesCS2B01G207600 chr4A 87.611 339 40 2 6238 6575 508837501 508837164 7.410000e-105 392.0
76 TraesCS2B01G207600 chr4A 91.697 277 23 0 1495 1771 598454263 598454539 1.240000e-102 385.0
77 TraesCS2B01G207600 chr4A 89.170 277 30 0 1495 1771 509223738 509223462 5.850000e-91 346.0
78 TraesCS2B01G207600 chr4A 88.087 277 33 0 1495 1771 508837865 508837589 5.900000e-86 329.0
79 TraesCS2B01G207600 chr4B 89.167 720 75 3 102 819 123920422 123921140 0.000000e+00 894.0
80 TraesCS2B01G207600 chr4B 88.810 420 47 0 400 819 9462730 9463149 4.220000e-142 516.0
81 TraesCS2B01G207600 chr4B 86.469 473 52 6 846 1309 9463243 9463712 7.060000e-140 508.0
82 TraesCS2B01G207600 chr4B 88.235 340 38 2 6237 6575 123922061 123922399 9.520000e-109 405.0
83 TraesCS2B01G207600 chr4B 91.697 277 23 0 1495 1771 9463705 9463981 1.240000e-102 385.0
84 TraesCS2B01G207600 chr4B 80.943 488 66 14 837 1306 123921225 123921703 2.090000e-95 361.0
85 TraesCS2B01G207600 chr4B 99.468 188 1 0 1307 1494 564389673 564389486 7.570000e-90 342.0
86 TraesCS2B01G207600 chr4B 89.051 274 30 0 1495 1768 123921699 123921972 2.720000e-89 340.0
87 TraesCS2B01G207600 chr4B 99.462 186 1 0 1310 1495 54028600 54028415 9.800000e-89 339.0
88 TraesCS2B01G207600 chrUn 100.000 411 0 0 6517 6927 477603397 477602987 0.000000e+00 760.0
89 TraesCS2B01G207600 chrUn 99.459 185 1 0 1310 1494 5429816 5429632 3.520000e-88 337.0
90 TraesCS2B01G207600 chr5D 94.322 317 18 0 7566 7882 320663477 320663161 3.310000e-133 486.0
91 TraesCS2B01G207600 chr5D 81.492 362 51 10 827 1182 450117113 450117464 4.660000e-72 283.0
92 TraesCS2B01G207600 chr7D 94.006 317 19 0 7566 7882 604462476 604462160 1.540000e-131 481.0
93 TraesCS2B01G207600 chr2D 93.769 321 19 1 7563 7882 562565747 562566067 1.540000e-131 481.0
94 TraesCS2B01G207600 chr3D 93.231 325 21 1 7558 7882 380496400 380496077 1.990000e-130 477.0
95 TraesCS2B01G207600 chr3D 93.458 321 20 1 7563 7882 579166181 579165861 7.160000e-130 475.0
96 TraesCS2B01G207600 chr3D 88.179 313 31 4 6675 6982 591344963 591345274 1.250000e-97 368.0
97 TraesCS2B01G207600 chr3D 85.671 328 41 3 6213 6534 591344617 591344944 2.720000e-89 340.0
98 TraesCS2B01G207600 chr3D 79.752 484 82 9 836 1306 591343659 591344139 3.520000e-88 337.0
99 TraesCS2B01G207600 chr3D 100.000 31 0 0 6618 6648 149612019 149611989 3.070000e-04 58.4
100 TraesCS2B01G207600 chr5B 99.459 185 1 0 1310 1494 282048282 282048098 3.520000e-88 337.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G207600 chr2B 188254556 188262437 7881 True 7058.500000 10833 100.000000 1 7882 2 chr2B.!!$R5 7881
1 TraesCS2B01G207600 chr2B 629343645 629347953 4308 False 2326.666667 4815 97.635667 2052 6207 3 chr2B.!!$F1 4155
2 TraesCS2B01G207600 chr2B 188148291 188151830 3539 True 1427.725000 2765 98.950500 1 7882 4 chr2B.!!$R4 7881
3 TraesCS2B01G207600 chr2B 188020101 188023696 3595 True 718.500000 1447 97.967667 6 7541 6 chr2B.!!$R3 7535
4 TraesCS2B01G207600 chr7A 688203685 688208082 4397 True 3748.500000 5247 99.127500 2052 6213 2 chr7A.!!$R3 4161
5 TraesCS2B01G207600 chr1A 350415646 350419966 4320 True 2500.666667 5203 99.492667 2052 6212 3 chr1A.!!$R2 4160
6 TraesCS2B01G207600 chr3A 494804473 494808871 4398 True 3692.000000 5182 98.551000 2051 6214 2 chr3A.!!$R3 4163
7 TraesCS2B01G207600 chr5A 426293266 426297472 4206 False 2628.500000 4636 96.317500 2052 6214 2 chr5A.!!$F3 4162
8 TraesCS2B01G207600 chr5A 414311618 414315859 4241 True 2368.666667 4828 99.483667 2052 6210 3 chr5A.!!$R1 4158
9 TraesCS2B01G207600 chr3B 398842997 398847232 4235 False 2226.000000 4610 96.375333 2051 6212 3 chr3B.!!$F2 4161
10 TraesCS2B01G207600 chr3B 739937791 739942178 4387 True 1888.500000 4056 97.830500 2052 6211 4 chr3B.!!$R2 4159
11 TraesCS2B01G207600 chr3B 793099474 793104034 4560 True 337.675000 619 83.855750 131 7086 4 chr3B.!!$R3 6955
12 TraesCS2B01G207600 chr1B 647917655 647921886 4231 True 2233.000000 4593 96.611333 2046 6210 3 chr1B.!!$R1 4164
13 TraesCS2B01G207600 chr6D 313893931 313896444 2513 False 3073.000000 3073 89.130000 2053 4522 1 chr6D.!!$F2 2469
14 TraesCS2B01G207600 chr7B 122292782 122296617 3835 True 1710.000000 1929 96.108000 2051 5823 2 chr7B.!!$R2 3772
15 TraesCS2B01G207600 chr7B 536767274 536767897 623 True 959.000000 959 94.391000 2052 2675 1 chr7B.!!$R1 623
16 TraesCS2B01G207600 chr4D 86312941 86314707 1766 False 548.333333 905 88.711333 90 6575 3 chr4D.!!$F4 6485
17 TraesCS2B01G207600 chr4D 86531777 86533786 2009 False 538.000000 891 88.516333 90 6575 3 chr4D.!!$F5 6485
18 TraesCS2B01G207600 chr4A 509223037 509225028 1991 True 554.000000 905 88.923333 90 6575 3 chr4A.!!$R3 6485
19 TraesCS2B01G207600 chr4A 598453798 598454539 741 False 406.000000 427 87.549500 840 1771 2 chr4A.!!$F1 931
20 TraesCS2B01G207600 chr4A 508837164 508838828 1664 True 382.666667 427 87.160667 414 6575 3 chr4A.!!$R2 6161
21 TraesCS2B01G207600 chr4B 123920422 123922399 1977 False 500.000000 894 86.849000 102 6575 4 chr4B.!!$F2 6473
22 TraesCS2B01G207600 chr4B 9462730 9463981 1251 False 469.666667 516 88.992000 400 1771 3 chr4B.!!$F1 1371
23 TraesCS2B01G207600 chr3D 591343659 591345274 1615 False 348.333333 368 84.534000 836 6982 3 chr3D.!!$F1 6146

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
282 293 2.105306 TCGATCTGCAATCCATGGACAT 59.895 45.455 18.99 6.29 0.00 3.06 F
1342 1459 0.663568 CGGTAAGGCGATCTAAGGCG 60.664 60.000 0.00 0.00 39.33 5.52 F
1427 1544 0.040425 GCGGGCATATTTGTAAGGCG 60.040 55.000 0.00 0.00 0.00 5.52 F
2792 3197 0.468648 TGCTGATGCTAGCTGATGCT 59.531 50.000 17.23 0.00 44.01 3.79 F
4666 5138 1.270274 GCATGCTGGTTGTCAATGACA 59.730 47.619 12.63 12.63 41.09 3.58 F
4833 5305 0.031721 GCTTGTTTCTTGCTGCTGCT 59.968 50.000 17.00 0.00 40.48 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1408 1525 0.040425 CGCCTTACAAATATGCCCGC 60.040 55.000 0.00 0.0 0.00 6.13 R
3016 3461 2.423538 GCCACAAAAGTCACACTTCACT 59.576 45.455 0.00 0.0 37.47 3.41 R
3316 3761 2.502213 TACCATCAATAGGACGCACG 57.498 50.000 0.00 0.0 0.00 5.34 R
4764 5236 2.257207 AGAGTAGCAACTAGTGGGCAA 58.743 47.619 18.71 0.0 35.56 4.52 R
6357 9500 0.953471 GTGTTATCGGTGCTGTGCCA 60.953 55.000 0.00 0.0 0.00 4.92 R
7383 11041 3.127895 CGGAAACAACAAACTTGTGGAGA 59.872 43.478 3.95 0.0 41.31 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
282 293 2.105306 TCGATCTGCAATCCATGGACAT 59.895 45.455 18.99 6.29 0.00 3.06
1298 1415 1.059913 ACAGCTCAGCCTACCTTGTT 58.940 50.000 0.00 0.00 0.00 2.83
1305 1422 2.563179 TCAGCCTACCTTGTTGACTCTC 59.437 50.000 0.00 0.00 0.00 3.20
1306 1423 1.903183 AGCCTACCTTGTTGACTCTCC 59.097 52.381 0.00 0.00 0.00 3.71
1307 1424 1.623811 GCCTACCTTGTTGACTCTCCA 59.376 52.381 0.00 0.00 0.00 3.86
1308 1425 2.237392 GCCTACCTTGTTGACTCTCCAT 59.763 50.000 0.00 0.00 0.00 3.41
1309 1426 3.680196 GCCTACCTTGTTGACTCTCCATC 60.680 52.174 0.00 0.00 0.00 3.51
1310 1427 3.772025 CCTACCTTGTTGACTCTCCATCT 59.228 47.826 0.00 0.00 0.00 2.90
1311 1428 4.956700 CCTACCTTGTTGACTCTCCATCTA 59.043 45.833 0.00 0.00 0.00 1.98
1312 1429 5.600484 CCTACCTTGTTGACTCTCCATCTAT 59.400 44.000 0.00 0.00 0.00 1.98
1313 1430 5.350504 ACCTTGTTGACTCTCCATCTATG 57.649 43.478 0.00 0.00 0.00 2.23
1314 1431 4.780021 ACCTTGTTGACTCTCCATCTATGT 59.220 41.667 0.00 0.00 0.00 2.29
1315 1432 5.249393 ACCTTGTTGACTCTCCATCTATGTT 59.751 40.000 0.00 0.00 0.00 2.71
1316 1433 6.176183 CCTTGTTGACTCTCCATCTATGTTT 58.824 40.000 0.00 0.00 0.00 2.83
1317 1434 6.656693 CCTTGTTGACTCTCCATCTATGTTTT 59.343 38.462 0.00 0.00 0.00 2.43
1318 1435 7.175641 CCTTGTTGACTCTCCATCTATGTTTTT 59.824 37.037 0.00 0.00 0.00 1.94
1319 1436 9.219603 CTTGTTGACTCTCCATCTATGTTTTTA 57.780 33.333 0.00 0.00 0.00 1.52
1320 1437 9.567776 TTGTTGACTCTCCATCTATGTTTTTAA 57.432 29.630 0.00 0.00 0.00 1.52
1321 1438 9.219603 TGTTGACTCTCCATCTATGTTTTTAAG 57.780 33.333 0.00 0.00 0.00 1.85
1322 1439 9.220767 GTTGACTCTCCATCTATGTTTTTAAGT 57.779 33.333 0.00 0.00 0.00 2.24
1323 1440 9.436957 TTGACTCTCCATCTATGTTTTTAAGTC 57.563 33.333 0.00 0.00 0.00 3.01
1324 1441 7.759886 TGACTCTCCATCTATGTTTTTAAGTCG 59.240 37.037 0.00 0.00 32.86 4.18
1325 1442 7.042335 ACTCTCCATCTATGTTTTTAAGTCGG 58.958 38.462 0.00 0.00 0.00 4.79
1326 1443 6.942976 TCTCCATCTATGTTTTTAAGTCGGT 58.057 36.000 0.00 0.00 0.00 4.69
1327 1444 8.070034 TCTCCATCTATGTTTTTAAGTCGGTA 57.930 34.615 0.00 0.00 0.00 4.02
1328 1445 8.533657 TCTCCATCTATGTTTTTAAGTCGGTAA 58.466 33.333 0.00 0.00 0.00 2.85
1329 1446 8.712285 TCCATCTATGTTTTTAAGTCGGTAAG 57.288 34.615 0.00 0.00 0.00 2.34
1330 1447 7.767198 TCCATCTATGTTTTTAAGTCGGTAAGG 59.233 37.037 0.00 0.00 0.00 2.69
1331 1448 6.973229 TCTATGTTTTTAAGTCGGTAAGGC 57.027 37.500 0.00 0.00 0.00 4.35
1332 1449 4.673534 ATGTTTTTAAGTCGGTAAGGCG 57.326 40.909 0.00 0.00 0.00 5.52
1333 1450 3.726607 TGTTTTTAAGTCGGTAAGGCGA 58.273 40.909 0.00 0.00 0.00 5.54
1334 1451 4.317488 TGTTTTTAAGTCGGTAAGGCGAT 58.683 39.130 0.00 0.00 0.00 4.58
1335 1452 4.389687 TGTTTTTAAGTCGGTAAGGCGATC 59.610 41.667 0.00 0.00 0.00 3.69
1336 1453 4.460948 TTTTAAGTCGGTAAGGCGATCT 57.539 40.909 0.00 0.00 0.00 2.75
1337 1454 5.581126 TTTTAAGTCGGTAAGGCGATCTA 57.419 39.130 0.00 0.00 0.00 1.98
1338 1455 5.581126 TTTAAGTCGGTAAGGCGATCTAA 57.419 39.130 0.00 0.00 0.00 2.10
1339 1456 3.712091 AAGTCGGTAAGGCGATCTAAG 57.288 47.619 0.00 0.00 0.00 2.18
1340 1457 1.955080 AGTCGGTAAGGCGATCTAAGG 59.045 52.381 0.00 0.00 0.00 2.69
1341 1458 0.672342 TCGGTAAGGCGATCTAAGGC 59.328 55.000 0.00 0.00 0.00 4.35
1342 1459 0.663568 CGGTAAGGCGATCTAAGGCG 60.664 60.000 0.00 0.00 39.33 5.52
1348 1465 2.029666 CGATCTAAGGCGCTGGGG 59.970 66.667 7.64 0.00 0.00 4.96
1349 1466 2.427753 GATCTAAGGCGCTGGGGG 59.572 66.667 7.64 0.00 0.00 5.40
1421 1538 1.981256 CCTAAGGCGGGCATATTTGT 58.019 50.000 3.78 0.00 0.00 2.83
1422 1539 3.134574 CCTAAGGCGGGCATATTTGTA 57.865 47.619 3.78 0.00 0.00 2.41
1423 1540 3.482436 CCTAAGGCGGGCATATTTGTAA 58.518 45.455 3.78 0.00 0.00 2.41
1424 1541 3.502211 CCTAAGGCGGGCATATTTGTAAG 59.498 47.826 3.78 0.00 0.00 2.34
1425 1542 1.981256 AGGCGGGCATATTTGTAAGG 58.019 50.000 3.78 0.00 0.00 2.69
1426 1543 0.313987 GGCGGGCATATTTGTAAGGC 59.686 55.000 0.00 0.00 0.00 4.35
1427 1544 0.040425 GCGGGCATATTTGTAAGGCG 60.040 55.000 0.00 0.00 0.00 5.52
1428 1545 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.000 0.00 0.00 0.00 6.53
1429 1546 1.318576 GGGCATATTTGTAAGGCGCT 58.681 50.000 7.64 0.00 34.95 5.92
1430 1547 1.001378 GGGCATATTTGTAAGGCGCTG 60.001 52.381 7.64 0.00 34.95 5.18
1431 1548 1.001378 GGCATATTTGTAAGGCGCTGG 60.001 52.381 7.64 0.00 0.00 4.85
1432 1549 1.600413 GCATATTTGTAAGGCGCTGGC 60.600 52.381 7.64 0.00 38.90 4.85
1433 1550 0.944386 ATATTTGTAAGGCGCTGGCG 59.056 50.000 7.64 10.80 41.24 5.69
1434 1551 1.092921 TATTTGTAAGGCGCTGGCGG 61.093 55.000 16.61 0.00 41.24 6.13
1463 1580 4.014065 GCCTAAGCGTCGCCTAAG 57.986 61.111 14.86 8.78 0.00 2.18
1464 1581 2.238437 GCCTAAGCGTCGCCTAAGC 61.238 63.158 14.86 7.18 0.00 3.09
1474 1591 3.195698 GCCTAAGCGTCCAAGGCG 61.196 66.667 0.00 0.00 45.82 5.52
1475 1592 2.511600 CCTAAGCGTCCAAGGCGG 60.512 66.667 5.39 0.00 33.62 6.13
1476 1593 2.511600 CTAAGCGTCCAAGGCGGG 60.512 66.667 5.39 0.00 33.62 6.13
1477 1594 2.998480 TAAGCGTCCAAGGCGGGA 60.998 61.111 0.00 0.00 33.62 5.14
1494 1611 1.199327 GGGACGCCTTAAAAACAGAGC 59.801 52.381 0.00 0.00 0.00 4.09
1495 1612 2.152016 GGACGCCTTAAAAACAGAGCT 58.848 47.619 0.00 0.00 0.00 4.09
1496 1613 2.159824 GGACGCCTTAAAAACAGAGCTC 59.840 50.000 5.27 5.27 0.00 4.09
1497 1614 3.067833 GACGCCTTAAAAACAGAGCTCT 58.932 45.455 11.45 11.45 0.00 4.09
2790 3195 0.869068 GCTGCTGATGCTAGCTGATG 59.131 55.000 17.23 5.22 42.98 3.07
2791 3196 0.869068 CTGCTGATGCTAGCTGATGC 59.131 55.000 17.23 14.96 42.98 3.91
2792 3197 0.468648 TGCTGATGCTAGCTGATGCT 59.531 50.000 17.23 0.00 44.01 3.79
2793 3198 1.810412 TGCTGATGCTAGCTGATGCTG 60.810 52.381 17.23 5.95 43.51 4.41
2794 3199 4.121864 TGCTGATGCTAGCTGATGCTGA 62.122 50.000 17.23 0.00 43.51 4.26
2795 3200 5.380633 TGCTGATGCTAGCTGATGCTGAT 62.381 47.826 17.23 0.00 43.51 2.90
3016 3461 4.380531 GTGATGTCACAAACAAGGAGAGA 58.619 43.478 8.22 0.00 45.75 3.10
3316 3761 6.015434 ACAAATTAGGACCAATGGACAAGTTC 60.015 38.462 6.16 0.00 0.00 3.01
4666 5138 1.270274 GCATGCTGGTTGTCAATGACA 59.730 47.619 12.63 12.63 41.09 3.58
4764 5236 1.139058 CCCGGTATACTTGCTTGCTCT 59.861 52.381 0.00 0.00 0.00 4.09
4786 5258 2.233922 TGCCCACTAGTTGCTACTCTTC 59.766 50.000 3.45 0.00 35.78 2.87
4790 5262 4.464597 CCCACTAGTTGCTACTCTTCTCTT 59.535 45.833 3.45 0.00 35.78 2.85
4791 5263 5.406649 CCACTAGTTGCTACTCTTCTCTTG 58.593 45.833 3.45 0.00 35.78 3.02
4792 5264 4.862018 CACTAGTTGCTACTCTTCTCTTGC 59.138 45.833 3.45 0.00 35.78 4.01
4793 5265 4.770010 ACTAGTTGCTACTCTTCTCTTGCT 59.230 41.667 3.45 0.00 35.78 3.91
4794 5266 3.924144 AGTTGCTACTCTTCTCTTGCTG 58.076 45.455 0.00 0.00 0.00 4.41
4795 5267 2.376808 TGCTACTCTTCTCTTGCTGC 57.623 50.000 0.00 0.00 0.00 5.25
4796 5268 1.898472 TGCTACTCTTCTCTTGCTGCT 59.102 47.619 0.00 0.00 0.00 4.24
4797 5269 2.270047 GCTACTCTTCTCTTGCTGCTG 58.730 52.381 0.00 0.00 0.00 4.41
4798 5270 2.270047 CTACTCTTCTCTTGCTGCTGC 58.730 52.381 8.89 8.89 40.20 5.25
4799 5271 0.686224 ACTCTTCTCTTGCTGCTGCT 59.314 50.000 17.00 0.00 40.48 4.24
4800 5272 1.898472 ACTCTTCTCTTGCTGCTGCTA 59.102 47.619 17.00 8.35 40.48 3.49
4801 5273 2.500910 ACTCTTCTCTTGCTGCTGCTAT 59.499 45.455 17.00 0.00 40.48 2.97
4802 5274 3.055240 ACTCTTCTCTTGCTGCTGCTATT 60.055 43.478 17.00 0.00 40.48 1.73
4803 5275 3.268330 TCTTCTCTTGCTGCTGCTATTG 58.732 45.455 17.00 5.31 40.48 1.90
4804 5276 3.055602 TCTTCTCTTGCTGCTGCTATTGA 60.056 43.478 17.00 7.42 40.48 2.57
4805 5277 3.339253 TCTCTTGCTGCTGCTATTGAA 57.661 42.857 17.00 1.30 40.48 2.69
4806 5278 3.268330 TCTCTTGCTGCTGCTATTGAAG 58.732 45.455 17.00 11.06 40.48 3.02
4807 5279 3.008330 CTCTTGCTGCTGCTATTGAAGT 58.992 45.455 17.00 0.00 40.48 3.01
4808 5280 4.081476 TCTCTTGCTGCTGCTATTGAAGTA 60.081 41.667 17.00 2.66 40.48 2.24
4809 5281 4.774124 TCTTGCTGCTGCTATTGAAGTAT 58.226 39.130 17.00 0.00 40.48 2.12
4810 5282 5.188434 TCTTGCTGCTGCTATTGAAGTATT 58.812 37.500 17.00 0.00 40.48 1.89
4811 5283 4.888038 TGCTGCTGCTATTGAAGTATTG 57.112 40.909 17.00 0.00 40.48 1.90
4812 5284 4.516323 TGCTGCTGCTATTGAAGTATTGA 58.484 39.130 17.00 0.00 40.48 2.57
4813 5285 5.128205 TGCTGCTGCTATTGAAGTATTGAT 58.872 37.500 17.00 0.00 40.48 2.57
4814 5286 5.008316 TGCTGCTGCTATTGAAGTATTGATG 59.992 40.000 17.00 0.00 40.48 3.07
4815 5287 5.428496 TGCTGCTATTGAAGTATTGATGC 57.572 39.130 0.00 0.00 0.00 3.91
4816 5288 5.128205 TGCTGCTATTGAAGTATTGATGCT 58.872 37.500 0.00 0.00 0.00 3.79
4817 5289 5.591472 TGCTGCTATTGAAGTATTGATGCTT 59.409 36.000 0.00 0.00 35.38 3.91
4818 5290 5.913514 GCTGCTATTGAAGTATTGATGCTTG 59.086 40.000 0.00 0.00 32.78 4.01
4819 5291 6.459298 GCTGCTATTGAAGTATTGATGCTTGT 60.459 38.462 0.00 0.00 32.78 3.16
4820 5292 7.395190 TGCTATTGAAGTATTGATGCTTGTT 57.605 32.000 0.00 0.00 32.78 2.83
4821 5293 7.829725 TGCTATTGAAGTATTGATGCTTGTTT 58.170 30.769 0.00 0.00 32.78 2.83
4822 5294 7.970061 TGCTATTGAAGTATTGATGCTTGTTTC 59.030 33.333 0.00 0.00 32.78 2.78
4823 5295 8.186821 GCTATTGAAGTATTGATGCTTGTTTCT 58.813 33.333 0.00 0.00 32.78 2.52
4825 5297 8.752766 ATTGAAGTATTGATGCTTGTTTCTTG 57.247 30.769 0.00 0.00 32.78 3.02
4826 5298 6.151691 TGAAGTATTGATGCTTGTTTCTTGC 58.848 36.000 0.00 0.00 32.78 4.01
4827 5299 5.972107 AGTATTGATGCTTGTTTCTTGCT 57.028 34.783 0.00 0.00 0.00 3.91
4828 5300 5.706916 AGTATTGATGCTTGTTTCTTGCTG 58.293 37.500 0.00 0.00 0.00 4.41
4829 5301 2.427232 TGATGCTTGTTTCTTGCTGC 57.573 45.000 0.00 0.00 0.00 5.25
4830 5302 1.958579 TGATGCTTGTTTCTTGCTGCT 59.041 42.857 0.00 0.00 0.00 4.24
4831 5303 2.287970 TGATGCTTGTTTCTTGCTGCTG 60.288 45.455 0.00 0.00 0.00 4.41
4832 5304 0.249155 TGCTTGTTTCTTGCTGCTGC 60.249 50.000 8.89 8.89 40.20 5.25
4833 5305 0.031721 GCTTGTTTCTTGCTGCTGCT 59.968 50.000 17.00 0.00 40.48 4.24
4834 5306 1.767289 CTTGTTTCTTGCTGCTGCTG 58.233 50.000 17.00 9.59 40.48 4.41
4835 5307 0.249155 TTGTTTCTTGCTGCTGCTGC 60.249 50.000 22.51 22.51 40.48 5.25
4836 5308 1.105167 TGTTTCTTGCTGCTGCTGCT 61.105 50.000 27.67 0.00 40.48 4.24
4837 5309 0.877071 GTTTCTTGCTGCTGCTGCTA 59.123 50.000 27.67 20.90 40.48 3.49
4838 5310 0.877071 TTTCTTGCTGCTGCTGCTAC 59.123 50.000 27.67 9.05 40.48 3.58
4839 5311 0.035881 TTCTTGCTGCTGCTGCTACT 59.964 50.000 27.67 0.00 40.48 2.57
4840 5312 0.897621 TCTTGCTGCTGCTGCTACTA 59.102 50.000 27.67 8.85 40.48 1.82
4841 5313 1.483827 TCTTGCTGCTGCTGCTACTAT 59.516 47.619 27.67 0.00 40.48 2.12
4842 5314 2.093288 TCTTGCTGCTGCTGCTACTATT 60.093 45.455 27.67 0.00 40.48 1.73
4843 5315 1.660167 TGCTGCTGCTGCTACTATTG 58.340 50.000 27.67 0.29 40.48 1.90
4844 5316 1.207811 TGCTGCTGCTGCTACTATTGA 59.792 47.619 27.67 6.46 40.48 2.57
4845 5317 2.158856 TGCTGCTGCTGCTACTATTGAT 60.159 45.455 27.67 0.00 40.48 2.57
4846 5318 2.223611 GCTGCTGCTGCTACTATTGATG 59.776 50.000 22.10 0.00 40.48 3.07
4847 5319 2.216046 TGCTGCTGCTACTATTGATGC 58.784 47.619 17.00 0.00 40.48 3.91
4848 5320 2.158856 TGCTGCTGCTACTATTGATGCT 60.159 45.455 17.00 0.00 40.48 3.79
4849 5321 2.877168 GCTGCTGCTACTATTGATGCTT 59.123 45.455 8.53 0.00 36.03 3.91
4850 5322 3.303857 GCTGCTGCTACTATTGATGCTTG 60.304 47.826 8.53 0.00 36.03 4.01
4851 5323 3.875727 CTGCTGCTACTATTGATGCTTGT 59.124 43.478 0.00 0.00 0.00 3.16
4852 5324 4.264253 TGCTGCTACTATTGATGCTTGTT 58.736 39.130 0.00 0.00 0.00 2.83
4853 5325 4.701651 TGCTGCTACTATTGATGCTTGTTT 59.298 37.500 0.00 0.00 0.00 2.83
4854 5326 5.163723 TGCTGCTACTATTGATGCTTGTTTC 60.164 40.000 0.00 0.00 0.00 2.78
4855 5327 5.065731 GCTGCTACTATTGATGCTTGTTTCT 59.934 40.000 0.00 0.00 0.00 2.52
4856 5328 6.404074 GCTGCTACTATTGATGCTTGTTTCTT 60.404 38.462 0.00 0.00 0.00 2.52
4857 5329 6.845302 TGCTACTATTGATGCTTGTTTCTTG 58.155 36.000 0.00 0.00 0.00 3.02
4858 5330 5.741040 GCTACTATTGATGCTTGTTTCTTGC 59.259 40.000 0.00 0.00 0.00 4.01
4859 5331 5.972107 ACTATTGATGCTTGTTTCTTGCT 57.028 34.783 0.00 0.00 0.00 3.91
4860 5332 5.706916 ACTATTGATGCTTGTTTCTTGCTG 58.293 37.500 0.00 0.00 0.00 4.41
4861 5333 4.595762 ATTGATGCTTGTTTCTTGCTGT 57.404 36.364 0.00 0.00 0.00 4.40
4862 5334 4.389890 TTGATGCTTGTTTCTTGCTGTT 57.610 36.364 0.00 0.00 0.00 3.16
4863 5335 3.708890 TGATGCTTGTTTCTTGCTGTTG 58.291 40.909 0.00 0.00 0.00 3.33
4864 5336 1.925229 TGCTTGTTTCTTGCTGTTGC 58.075 45.000 0.00 0.00 40.20 4.17
4865 5337 1.477700 TGCTTGTTTCTTGCTGTTGCT 59.522 42.857 0.00 0.00 40.48 3.91
4866 5338 1.856597 GCTTGTTTCTTGCTGTTGCTG 59.143 47.619 0.00 0.00 40.48 4.41
4867 5339 1.856597 CTTGTTTCTTGCTGTTGCTGC 59.143 47.619 0.00 0.00 40.48 5.25
4868 5340 1.105457 TGTTTCTTGCTGTTGCTGCT 58.895 45.000 0.00 0.00 40.48 4.24
4869 5341 1.202325 TGTTTCTTGCTGTTGCTGCTG 60.202 47.619 0.00 0.00 40.48 4.41
4870 5342 0.249155 TTTCTTGCTGTTGCTGCTGC 60.249 50.000 8.89 8.89 40.48 5.25
4871 5343 1.105167 TTCTTGCTGTTGCTGCTGCT 61.105 50.000 17.00 0.00 40.48 4.24
4872 5344 0.250424 TCTTGCTGTTGCTGCTGCTA 60.250 50.000 17.00 6.36 40.48 3.49
4873 5345 0.809385 CTTGCTGTTGCTGCTGCTAT 59.191 50.000 17.00 0.00 40.48 2.97
4874 5346 1.201647 CTTGCTGTTGCTGCTGCTATT 59.798 47.619 17.00 0.00 40.48 1.73
4875 5347 0.524414 TGCTGTTGCTGCTGCTATTG 59.476 50.000 17.00 7.36 40.48 1.90
4876 5348 0.806868 GCTGTTGCTGCTGCTATTGA 59.193 50.000 17.00 0.00 40.48 2.57
4877 5349 1.404391 GCTGTTGCTGCTGCTATTGAT 59.596 47.619 17.00 0.00 40.48 2.57
4878 5350 2.794981 GCTGTTGCTGCTGCTATTGATG 60.795 50.000 17.00 2.37 40.48 3.07
4879 5351 1.133598 TGTTGCTGCTGCTATTGATGC 59.866 47.619 17.00 0.00 40.48 3.91
4880 5352 1.404391 GTTGCTGCTGCTATTGATGCT 59.596 47.619 17.00 0.00 40.48 3.79
4881 5353 1.758936 TGCTGCTGCTATTGATGCTT 58.241 45.000 17.00 0.00 40.48 3.91
4882 5354 1.404035 TGCTGCTGCTATTGATGCTTG 59.596 47.619 17.00 0.00 40.48 4.01
4883 5355 1.864435 GCTGCTGCTATTGATGCTTGC 60.864 52.381 8.53 0.00 36.03 4.01
4884 5356 1.676529 CTGCTGCTATTGATGCTTGCT 59.323 47.619 0.00 0.00 34.08 3.91
4885 5357 2.097036 TGCTGCTATTGATGCTTGCTT 58.903 42.857 0.00 0.00 34.08 3.91
4886 5358 2.098607 TGCTGCTATTGATGCTTGCTTC 59.901 45.455 0.00 2.12 34.08 3.86
4887 5359 2.543238 GCTGCTATTGATGCTTGCTTCC 60.543 50.000 6.13 0.00 0.00 3.46
4888 5360 2.950309 CTGCTATTGATGCTTGCTTCCT 59.050 45.455 6.13 0.00 0.00 3.36
4889 5361 2.686405 TGCTATTGATGCTTGCTTCCTG 59.314 45.455 6.13 0.00 0.00 3.86
4890 5362 2.543238 GCTATTGATGCTTGCTTCCTGC 60.543 50.000 6.13 0.00 43.25 4.85
4891 5363 1.848652 ATTGATGCTTGCTTCCTGCT 58.151 45.000 6.13 0.00 43.37 4.24
4892 5364 0.885879 TTGATGCTTGCTTCCTGCTG 59.114 50.000 6.13 0.00 43.37 4.41
4893 5365 1.139095 GATGCTTGCTTCCTGCTGC 59.861 57.895 0.00 0.00 43.37 5.25
4934 5516 1.028330 GCTGCTACCTTGATGCTGCA 61.028 55.000 4.13 4.13 46.12 4.41
4935 5517 1.456296 CTGCTACCTTGATGCTGCAA 58.544 50.000 6.36 0.00 0.00 4.08
4936 5518 1.814394 CTGCTACCTTGATGCTGCAAA 59.186 47.619 6.36 0.00 0.00 3.68
4937 5519 2.229543 CTGCTACCTTGATGCTGCAAAA 59.770 45.455 6.36 3.58 0.00 2.44
4938 5520 2.827322 TGCTACCTTGATGCTGCAAAAT 59.173 40.909 6.36 0.00 0.00 1.82
4940 5522 3.119388 GCTACCTTGATGCTGCAAAATGA 60.119 43.478 6.36 0.00 0.00 2.57
4941 5523 4.441079 GCTACCTTGATGCTGCAAAATGAT 60.441 41.667 6.36 0.00 0.00 2.45
4942 5524 3.857052 ACCTTGATGCTGCAAAATGATG 58.143 40.909 6.36 0.00 0.00 3.07
4943 5525 3.259876 ACCTTGATGCTGCAAAATGATGT 59.740 39.130 6.36 0.00 0.00 3.06
4944 5526 4.250464 CCTTGATGCTGCAAAATGATGTT 58.750 39.130 6.36 0.00 0.00 2.71
5194 6063 6.566079 TGTTTATCTTGATGAGGAGGATGT 57.434 37.500 0.00 0.00 0.00 3.06
5834 6737 9.948964 TGCTGCTAACATCTTTACATATATGAT 57.051 29.630 19.63 6.41 0.00 2.45
6214 7195 5.693814 AGCGCTTTCTCAAACTTTGATTAG 58.306 37.500 2.64 4.54 39.30 1.73
6215 7196 4.853743 GCGCTTTCTCAAACTTTGATTAGG 59.146 41.667 0.00 0.00 39.30 2.69
6216 7197 5.393962 CGCTTTCTCAAACTTTGATTAGGG 58.606 41.667 4.65 7.27 39.30 3.53
6217 7198 5.164233 GCTTTCTCAAACTTTGATTAGGGC 58.836 41.667 4.65 3.61 39.30 5.19
6285 9420 3.405831 TCATTCAGCTCAAAGACAGGTG 58.594 45.455 0.00 0.00 40.16 4.00
7447 11105 2.435437 TGCTTATGTGCAGATGAGGCTA 59.565 45.455 16.07 2.97 38.12 3.93
7468 11126 7.719633 AGGCTAATTTGTTCTTCACAAGTCTAA 59.280 33.333 0.00 0.00 46.37 2.10
7547 11205 2.359848 GTGGAAACTAAGGGCGTGTTTT 59.640 45.455 0.00 0.00 34.55 2.43
7581 11240 4.231890 TGGAAGGAAAACAGGCCCTAATAT 59.768 41.667 0.00 0.00 0.00 1.28
7608 11267 3.244033 TGAAACTTGTTTGGTTGCCTG 57.756 42.857 3.27 0.00 0.00 4.85
7610 11269 0.901124 AACTTGTTTGGTTGCCTGCA 59.099 45.000 0.00 0.00 0.00 4.41
7612 11271 1.485895 ACTTGTTTGGTTGCCTGCATT 59.514 42.857 0.00 0.00 0.00 3.56
7613 11272 2.137523 CTTGTTTGGTTGCCTGCATTC 58.862 47.619 0.00 0.00 0.00 2.67
7614 11273 0.392336 TGTTTGGTTGCCTGCATTCC 59.608 50.000 0.00 0.00 0.00 3.01
7615 11274 0.681175 GTTTGGTTGCCTGCATTCCT 59.319 50.000 12.64 0.00 0.00 3.36
7616 11275 1.892474 GTTTGGTTGCCTGCATTCCTA 59.108 47.619 12.64 5.21 0.00 2.94
7617 11276 1.838112 TTGGTTGCCTGCATTCCTAG 58.162 50.000 12.64 0.00 0.00 3.02
7618 11277 0.680921 TGGTTGCCTGCATTCCTAGC 60.681 55.000 12.64 0.66 0.00 3.42
7619 11278 1.387295 GGTTGCCTGCATTCCTAGCC 61.387 60.000 0.00 0.00 0.00 3.93
7697 11356 1.700523 CACATGAACATGGCGTTTGG 58.299 50.000 17.25 0.00 42.91 3.28
7784 11443 1.301716 CTAGCACACCAACGCCACT 60.302 57.895 0.00 0.00 0.00 4.00
7796 11455 0.591170 ACGCCACTACACAACAATGC 59.409 50.000 0.00 0.00 0.00 3.56
7828 11487 7.322664 ACTGAGAGAAGATGATGAAGTTCTTC 58.677 38.462 10.98 10.98 43.61 2.87
7829 11488 6.328714 TGAGAGAAGATGATGAAGTTCTTCG 58.671 40.000 12.61 0.00 46.34 3.79
7831 11490 4.187694 AGAAGATGATGAAGTTCTTCGGC 58.812 43.478 12.61 7.95 46.34 5.54
7833 11492 4.213564 AGATGATGAAGTTCTTCGGCTT 57.786 40.909 12.61 1.82 0.00 4.35
7834 11493 4.187694 AGATGATGAAGTTCTTCGGCTTC 58.812 43.478 12.61 9.02 40.90 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
282 293 4.399395 CAAGAGCAGCCAGGCCGA 62.399 66.667 8.22 0.00 0.00 5.54
1298 1415 7.759886 CGACTTAAAAACATAGATGGAGAGTCA 59.240 37.037 0.00 0.00 31.50 3.41
1305 1422 7.466860 GCCTTACCGACTTAAAAACATAGATGG 60.467 40.741 0.00 0.00 0.00 3.51
1306 1423 7.407337 GCCTTACCGACTTAAAAACATAGATG 58.593 38.462 0.00 0.00 0.00 2.90
1307 1424 6.257193 CGCCTTACCGACTTAAAAACATAGAT 59.743 38.462 0.00 0.00 0.00 1.98
1308 1425 5.577945 CGCCTTACCGACTTAAAAACATAGA 59.422 40.000 0.00 0.00 0.00 1.98
1309 1426 5.577945 TCGCCTTACCGACTTAAAAACATAG 59.422 40.000 0.00 0.00 31.36 2.23
1310 1427 5.477510 TCGCCTTACCGACTTAAAAACATA 58.522 37.500 0.00 0.00 31.36 2.29
1311 1428 4.317488 TCGCCTTACCGACTTAAAAACAT 58.683 39.130 0.00 0.00 31.36 2.71
1312 1429 3.726607 TCGCCTTACCGACTTAAAAACA 58.273 40.909 0.00 0.00 31.36 2.83
1313 1430 4.628766 AGATCGCCTTACCGACTTAAAAAC 59.371 41.667 0.00 0.00 40.40 2.43
1314 1431 4.824289 AGATCGCCTTACCGACTTAAAAA 58.176 39.130 0.00 0.00 40.40 1.94
1315 1432 4.460948 AGATCGCCTTACCGACTTAAAA 57.539 40.909 0.00 0.00 40.40 1.52
1316 1433 5.450965 CCTTAGATCGCCTTACCGACTTAAA 60.451 44.000 0.00 0.00 40.40 1.52
1317 1434 4.037208 CCTTAGATCGCCTTACCGACTTAA 59.963 45.833 0.00 0.00 40.40 1.85
1318 1435 3.567164 CCTTAGATCGCCTTACCGACTTA 59.433 47.826 0.00 0.00 40.40 2.24
1319 1436 2.361438 CCTTAGATCGCCTTACCGACTT 59.639 50.000 0.00 0.00 40.40 3.01
1320 1437 1.955080 CCTTAGATCGCCTTACCGACT 59.045 52.381 0.00 0.00 40.40 4.18
1321 1438 1.602416 GCCTTAGATCGCCTTACCGAC 60.602 57.143 0.00 0.00 40.40 4.79
1322 1439 0.672342 GCCTTAGATCGCCTTACCGA 59.328 55.000 0.00 0.00 41.98 4.69
1323 1440 0.663568 CGCCTTAGATCGCCTTACCG 60.664 60.000 0.00 0.00 0.00 4.02
1324 1441 0.944788 GCGCCTTAGATCGCCTTACC 60.945 60.000 0.00 0.00 45.01 2.85
1325 1442 2.518711 GCGCCTTAGATCGCCTTAC 58.481 57.895 0.00 0.00 45.01 2.34
1331 1448 2.029666 CCCCAGCGCCTTAGATCG 59.970 66.667 2.29 0.00 0.00 3.69
1332 1449 2.427753 CCCCCAGCGCCTTAGATC 59.572 66.667 2.29 0.00 0.00 2.75
1402 1519 1.981256 ACAAATATGCCCGCCTTAGG 58.019 50.000 0.00 0.00 0.00 2.69
1403 1520 3.502211 CCTTACAAATATGCCCGCCTTAG 59.498 47.826 0.00 0.00 0.00 2.18
1404 1521 3.482436 CCTTACAAATATGCCCGCCTTA 58.518 45.455 0.00 0.00 0.00 2.69
1405 1522 2.306847 CCTTACAAATATGCCCGCCTT 58.693 47.619 0.00 0.00 0.00 4.35
1406 1523 1.981256 CCTTACAAATATGCCCGCCT 58.019 50.000 0.00 0.00 0.00 5.52
1407 1524 0.313987 GCCTTACAAATATGCCCGCC 59.686 55.000 0.00 0.00 0.00 6.13
1408 1525 0.040425 CGCCTTACAAATATGCCCGC 60.040 55.000 0.00 0.00 0.00 6.13
1409 1526 0.040425 GCGCCTTACAAATATGCCCG 60.040 55.000 0.00 0.00 0.00 6.13
1410 1527 1.001378 CAGCGCCTTACAAATATGCCC 60.001 52.381 2.29 0.00 0.00 5.36
1411 1528 1.001378 CCAGCGCCTTACAAATATGCC 60.001 52.381 2.29 0.00 0.00 4.40
1412 1529 1.600413 GCCAGCGCCTTACAAATATGC 60.600 52.381 2.29 0.00 0.00 3.14
1413 1530 1.334059 CGCCAGCGCCTTACAAATATG 60.334 52.381 2.29 0.00 0.00 1.78
1414 1531 0.944386 CGCCAGCGCCTTACAAATAT 59.056 50.000 2.29 0.00 0.00 1.28
1415 1532 1.092921 CCGCCAGCGCCTTACAAATA 61.093 55.000 2.29 0.00 38.24 1.40
1416 1533 2.406616 CCGCCAGCGCCTTACAAAT 61.407 57.895 2.29 0.00 38.24 2.32
1417 1534 3.053291 CCGCCAGCGCCTTACAAA 61.053 61.111 2.29 0.00 38.24 2.83
1446 1563 2.238437 GCTTAGGCGACGCTTAGGC 61.238 63.158 25.71 25.71 36.29 3.93
1447 1564 4.014065 GCTTAGGCGACGCTTAGG 57.986 61.111 20.77 17.82 0.00 2.69
1458 1575 2.511600 CCGCCTTGGACGCTTAGG 60.512 66.667 0.00 0.00 42.00 2.69
1459 1576 2.511600 CCCGCCTTGGACGCTTAG 60.512 66.667 0.00 0.00 42.00 2.18
1460 1577 2.998480 TCCCGCCTTGGACGCTTA 60.998 61.111 0.00 0.00 42.00 3.09
1461 1578 4.699522 GTCCCGCCTTGGACGCTT 62.700 66.667 0.00 0.00 44.98 4.68
1473 1590 1.463444 CTCTGTTTTTAAGGCGTCCCG 59.537 52.381 0.00 0.00 35.76 5.14
1474 1591 1.199327 GCTCTGTTTTTAAGGCGTCCC 59.801 52.381 0.00 0.00 0.00 4.46
1475 1592 2.152016 AGCTCTGTTTTTAAGGCGTCC 58.848 47.619 0.00 0.00 0.00 4.79
1476 1593 3.067833 AGAGCTCTGTTTTTAAGGCGTC 58.932 45.455 17.42 0.00 0.00 5.19
1477 1594 3.067833 GAGAGCTCTGTTTTTAAGGCGT 58.932 45.455 23.91 0.00 0.00 5.68
1478 1595 2.416893 GGAGAGCTCTGTTTTTAAGGCG 59.583 50.000 23.91 0.00 0.00 5.52
1479 1596 3.412386 TGGAGAGCTCTGTTTTTAAGGC 58.588 45.455 23.91 1.66 0.00 4.35
1480 1597 7.201767 CCAATATGGAGAGCTCTGTTTTTAAGG 60.202 40.741 23.91 10.16 40.96 2.69
1481 1598 7.680588 GCCAATATGGAGAGCTCTGTTTTTAAG 60.681 40.741 23.91 5.47 40.96 1.85
1482 1599 6.095440 GCCAATATGGAGAGCTCTGTTTTTAA 59.905 38.462 23.91 0.00 40.96 1.52
1483 1600 5.590259 GCCAATATGGAGAGCTCTGTTTTTA 59.410 40.000 23.91 5.98 40.96 1.52
1484 1601 4.400567 GCCAATATGGAGAGCTCTGTTTTT 59.599 41.667 23.91 5.36 40.96 1.94
1485 1602 3.950395 GCCAATATGGAGAGCTCTGTTTT 59.050 43.478 23.91 5.63 40.96 2.43
1486 1603 3.549794 GCCAATATGGAGAGCTCTGTTT 58.450 45.455 23.91 7.55 40.96 2.83
1487 1604 2.158696 GGCCAATATGGAGAGCTCTGTT 60.159 50.000 23.91 7.94 40.96 3.16
1488 1605 1.419387 GGCCAATATGGAGAGCTCTGT 59.581 52.381 23.91 9.52 40.96 3.41
1489 1606 1.698532 AGGCCAATATGGAGAGCTCTG 59.301 52.381 23.91 5.33 40.96 3.35
1490 1607 1.698532 CAGGCCAATATGGAGAGCTCT 59.301 52.381 18.28 18.28 40.96 4.09
1491 1608 1.881498 GCAGGCCAATATGGAGAGCTC 60.881 57.143 5.01 5.27 40.96 4.09
1492 1609 0.110104 GCAGGCCAATATGGAGAGCT 59.890 55.000 5.01 0.00 40.96 4.09
1493 1610 0.892814 GGCAGGCCAATATGGAGAGC 60.893 60.000 5.01 0.10 40.96 4.09
1494 1611 0.251077 GGGCAGGCCAATATGGAGAG 60.251 60.000 13.10 0.00 40.96 3.20
1495 1612 0.992970 TGGGCAGGCCAATATGGAGA 60.993 55.000 14.77 0.00 40.96 3.71
1496 1613 0.106066 TTGGGCAGGCCAATATGGAG 60.106 55.000 24.40 0.00 40.96 3.86
1497 1614 0.106066 CTTGGGCAGGCCAATATGGA 60.106 55.000 27.83 5.75 40.96 3.41
3016 3461 2.423538 GCCACAAAAGTCACACTTCACT 59.576 45.455 0.00 0.00 37.47 3.41
3316 3761 2.502213 TACCATCAATAGGACGCACG 57.498 50.000 0.00 0.00 0.00 5.34
4764 5236 2.257207 AGAGTAGCAACTAGTGGGCAA 58.743 47.619 18.71 0.00 35.56 4.52
4786 5258 3.008330 ACTTCAATAGCAGCAGCAAGAG 58.992 45.455 3.17 0.00 45.49 2.85
4790 5262 4.516323 TCAATACTTCAATAGCAGCAGCA 58.484 39.130 3.17 0.00 45.49 4.41
4791 5263 5.450171 CATCAATACTTCAATAGCAGCAGC 58.550 41.667 0.00 0.00 42.56 5.25
4792 5264 5.238868 AGCATCAATACTTCAATAGCAGCAG 59.761 40.000 0.00 0.00 0.00 4.24
4793 5265 5.128205 AGCATCAATACTTCAATAGCAGCA 58.872 37.500 0.00 0.00 0.00 4.41
4794 5266 5.686159 AGCATCAATACTTCAATAGCAGC 57.314 39.130 0.00 0.00 0.00 5.25
4795 5267 7.024340 ACAAGCATCAATACTTCAATAGCAG 57.976 36.000 0.00 0.00 0.00 4.24
4796 5268 7.395190 AACAAGCATCAATACTTCAATAGCA 57.605 32.000 0.00 0.00 0.00 3.49
4797 5269 8.186821 AGAAACAAGCATCAATACTTCAATAGC 58.813 33.333 0.00 0.00 0.00 2.97
4799 5271 9.844790 CAAGAAACAAGCATCAATACTTCAATA 57.155 29.630 0.00 0.00 0.00 1.90
4800 5272 7.330208 GCAAGAAACAAGCATCAATACTTCAAT 59.670 33.333 0.00 0.00 0.00 2.57
4801 5273 6.642131 GCAAGAAACAAGCATCAATACTTCAA 59.358 34.615 0.00 0.00 0.00 2.69
4802 5274 6.016024 AGCAAGAAACAAGCATCAATACTTCA 60.016 34.615 0.00 0.00 0.00 3.02
4803 5275 6.307318 CAGCAAGAAACAAGCATCAATACTTC 59.693 38.462 0.00 0.00 0.00 3.01
4804 5276 6.154445 CAGCAAGAAACAAGCATCAATACTT 58.846 36.000 0.00 0.00 0.00 2.24
4805 5277 5.706916 CAGCAAGAAACAAGCATCAATACT 58.293 37.500 0.00 0.00 0.00 2.12
4806 5278 4.325472 GCAGCAAGAAACAAGCATCAATAC 59.675 41.667 0.00 0.00 0.00 1.89
4807 5279 4.219070 AGCAGCAAGAAACAAGCATCAATA 59.781 37.500 0.00 0.00 0.00 1.90
4808 5280 3.006537 AGCAGCAAGAAACAAGCATCAAT 59.993 39.130 0.00 0.00 0.00 2.57
4809 5281 2.363038 AGCAGCAAGAAACAAGCATCAA 59.637 40.909 0.00 0.00 0.00 2.57
4810 5282 1.958579 AGCAGCAAGAAACAAGCATCA 59.041 42.857 0.00 0.00 0.00 3.07
4811 5283 2.325761 CAGCAGCAAGAAACAAGCATC 58.674 47.619 0.00 0.00 0.00 3.91
4812 5284 1.604693 GCAGCAGCAAGAAACAAGCAT 60.605 47.619 0.00 0.00 41.58 3.79
4813 5285 0.249155 GCAGCAGCAAGAAACAAGCA 60.249 50.000 0.00 0.00 41.58 3.91
4814 5286 0.031721 AGCAGCAGCAAGAAACAAGC 59.968 50.000 3.17 0.00 45.49 4.01
4815 5287 1.767289 CAGCAGCAGCAAGAAACAAG 58.233 50.000 3.17 0.00 45.49 3.16
4816 5288 0.249155 GCAGCAGCAGCAAGAAACAA 60.249 50.000 4.63 0.00 45.49 2.83
4817 5289 1.105167 AGCAGCAGCAGCAAGAAACA 61.105 50.000 12.92 0.00 45.49 2.83
4818 5290 0.877071 TAGCAGCAGCAGCAAGAAAC 59.123 50.000 12.92 0.00 45.49 2.78
4819 5291 0.877071 GTAGCAGCAGCAGCAAGAAA 59.123 50.000 12.92 0.00 45.49 2.52
4820 5292 0.035881 AGTAGCAGCAGCAGCAAGAA 59.964 50.000 12.92 0.00 45.49 2.52
4821 5293 0.897621 TAGTAGCAGCAGCAGCAAGA 59.102 50.000 12.92 0.00 45.49 3.02
4822 5294 1.950828 ATAGTAGCAGCAGCAGCAAG 58.049 50.000 12.92 0.00 45.49 4.01
4823 5295 2.011947 CAATAGTAGCAGCAGCAGCAA 58.988 47.619 12.92 0.00 45.49 3.91
4824 5296 1.207811 TCAATAGTAGCAGCAGCAGCA 59.792 47.619 12.92 0.00 45.49 4.41
4825 5297 1.945387 TCAATAGTAGCAGCAGCAGC 58.055 50.000 3.17 0.46 45.49 5.25
4826 5298 2.223611 GCATCAATAGTAGCAGCAGCAG 59.776 50.000 3.17 0.00 45.49 4.24
4827 5299 2.158856 AGCATCAATAGTAGCAGCAGCA 60.159 45.455 3.17 0.00 45.49 4.41
4828 5300 2.492012 AGCATCAATAGTAGCAGCAGC 58.508 47.619 0.00 0.00 42.56 5.25
4829 5301 3.875727 ACAAGCATCAATAGTAGCAGCAG 59.124 43.478 0.00 0.00 0.00 4.24
4830 5302 3.877559 ACAAGCATCAATAGTAGCAGCA 58.122 40.909 0.00 0.00 0.00 4.41
4831 5303 4.889832 AACAAGCATCAATAGTAGCAGC 57.110 40.909 0.00 0.00 0.00 5.25
4832 5304 6.674694 AGAAACAAGCATCAATAGTAGCAG 57.325 37.500 0.00 0.00 0.00 4.24
4833 5305 6.623549 GCAAGAAACAAGCATCAATAGTAGCA 60.624 38.462 0.00 0.00 0.00 3.49
4834 5306 5.741040 GCAAGAAACAAGCATCAATAGTAGC 59.259 40.000 0.00 0.00 0.00 3.58
4835 5307 6.965500 CAGCAAGAAACAAGCATCAATAGTAG 59.035 38.462 0.00 0.00 0.00 2.57
4836 5308 6.430925 ACAGCAAGAAACAAGCATCAATAGTA 59.569 34.615 0.00 0.00 0.00 1.82
4837 5309 5.242393 ACAGCAAGAAACAAGCATCAATAGT 59.758 36.000 0.00 0.00 0.00 2.12
4838 5310 5.706916 ACAGCAAGAAACAAGCATCAATAG 58.293 37.500 0.00 0.00 0.00 1.73
4839 5311 5.710513 ACAGCAAGAAACAAGCATCAATA 57.289 34.783 0.00 0.00 0.00 1.90
4840 5312 4.595762 ACAGCAAGAAACAAGCATCAAT 57.404 36.364 0.00 0.00 0.00 2.57
4841 5313 4.114073 CAACAGCAAGAAACAAGCATCAA 58.886 39.130 0.00 0.00 0.00 2.57
4842 5314 3.708890 CAACAGCAAGAAACAAGCATCA 58.291 40.909 0.00 0.00 0.00 3.07
4843 5315 2.473984 GCAACAGCAAGAAACAAGCATC 59.526 45.455 0.00 0.00 0.00 3.91
4844 5316 2.101917 AGCAACAGCAAGAAACAAGCAT 59.898 40.909 0.00 0.00 0.00 3.79
4845 5317 1.477700 AGCAACAGCAAGAAACAAGCA 59.522 42.857 0.00 0.00 0.00 3.91
4846 5318 1.856597 CAGCAACAGCAAGAAACAAGC 59.143 47.619 0.00 0.00 0.00 4.01
4847 5319 1.856597 GCAGCAACAGCAAGAAACAAG 59.143 47.619 0.00 0.00 0.00 3.16
4848 5320 1.477700 AGCAGCAACAGCAAGAAACAA 59.522 42.857 0.00 0.00 0.00 2.83
4849 5321 1.105457 AGCAGCAACAGCAAGAAACA 58.895 45.000 0.00 0.00 0.00 2.83
4850 5322 1.484356 CAGCAGCAACAGCAAGAAAC 58.516 50.000 0.00 0.00 0.00 2.78
4851 5323 0.249155 GCAGCAGCAACAGCAAGAAA 60.249 50.000 0.00 0.00 41.58 2.52
4852 5324 1.105167 AGCAGCAGCAACAGCAAGAA 61.105 50.000 3.17 0.00 45.49 2.52
4853 5325 0.250424 TAGCAGCAGCAACAGCAAGA 60.250 50.000 3.17 0.00 45.49 3.02
4854 5326 0.809385 ATAGCAGCAGCAACAGCAAG 59.191 50.000 3.17 0.00 45.49 4.01
4855 5327 1.068125 CAATAGCAGCAGCAACAGCAA 60.068 47.619 3.17 0.00 45.49 3.91
4856 5328 0.524414 CAATAGCAGCAGCAACAGCA 59.476 50.000 3.17 0.00 45.49 4.41
4857 5329 0.806868 TCAATAGCAGCAGCAACAGC 59.193 50.000 3.17 0.00 45.49 4.40
4858 5330 2.794981 GCATCAATAGCAGCAGCAACAG 60.795 50.000 3.17 0.00 45.49 3.16
4859 5331 1.133598 GCATCAATAGCAGCAGCAACA 59.866 47.619 3.17 0.00 45.49 3.33
4860 5332 1.404391 AGCATCAATAGCAGCAGCAAC 59.596 47.619 3.17 0.00 45.49 4.17
4861 5333 1.758936 AGCATCAATAGCAGCAGCAA 58.241 45.000 3.17 0.00 45.49 3.91
4862 5334 1.404035 CAAGCATCAATAGCAGCAGCA 59.596 47.619 3.17 0.00 45.49 4.41
4863 5335 1.864435 GCAAGCATCAATAGCAGCAGC 60.864 52.381 0.00 0.00 42.56 5.25
4864 5336 1.676529 AGCAAGCATCAATAGCAGCAG 59.323 47.619 0.00 0.00 37.62 4.24
4865 5337 1.758936 AGCAAGCATCAATAGCAGCA 58.241 45.000 0.00 0.00 37.62 4.41
4866 5338 2.543238 GGAAGCAAGCATCAATAGCAGC 60.543 50.000 0.00 0.00 36.12 5.25
4867 5339 2.950309 AGGAAGCAAGCATCAATAGCAG 59.050 45.455 0.00 0.00 0.00 4.24
4868 5340 2.686405 CAGGAAGCAAGCATCAATAGCA 59.314 45.455 0.00 0.00 0.00 3.49
4869 5341 2.543238 GCAGGAAGCAAGCATCAATAGC 60.543 50.000 0.00 0.00 44.79 2.97
4870 5342 3.351020 GCAGGAAGCAAGCATCAATAG 57.649 47.619 0.00 0.00 44.79 1.73
4882 5354 4.117661 GCAGCAGCAGCAGGAAGC 62.118 66.667 4.63 0.00 45.49 3.86
4883 5355 1.078637 TAGCAGCAGCAGCAGGAAG 60.079 57.895 12.92 0.00 45.49 3.46
4884 5356 1.376424 GTAGCAGCAGCAGCAGGAA 60.376 57.895 12.92 0.00 45.49 3.36
4885 5357 2.267006 GTAGCAGCAGCAGCAGGA 59.733 61.111 12.92 0.00 45.49 3.86
4886 5358 2.823147 GGTAGCAGCAGCAGCAGG 60.823 66.667 12.92 0.00 45.49 4.85
4887 5359 1.451567 ATGGTAGCAGCAGCAGCAG 60.452 57.895 12.92 0.00 45.49 4.24
4888 5360 1.747745 CATGGTAGCAGCAGCAGCA 60.748 57.895 12.92 5.91 45.49 4.41
4889 5361 3.108343 CATGGTAGCAGCAGCAGC 58.892 61.111 3.17 0.46 45.49 5.25
4890 5362 0.179065 TAGCATGGTAGCAGCAGCAG 60.179 55.000 15.95 0.00 45.49 4.24
4891 5363 0.462581 GTAGCATGGTAGCAGCAGCA 60.463 55.000 4.51 0.00 45.49 4.41
4892 5364 0.179062 AGTAGCATGGTAGCAGCAGC 60.179 55.000 4.51 12.08 42.56 5.25
4893 5365 1.579698 CAGTAGCATGGTAGCAGCAG 58.420 55.000 4.51 3.93 36.85 4.24
6214 7195 3.813724 GGTTGAATTTAGAGTATCCGCCC 59.186 47.826 0.00 0.00 33.66 6.13
6215 7196 3.493503 CGGTTGAATTTAGAGTATCCGCC 59.506 47.826 0.00 0.00 33.66 6.13
6216 7197 4.365723 TCGGTTGAATTTAGAGTATCCGC 58.634 43.478 0.00 0.00 36.16 5.54
6217 7198 6.897259 TTTCGGTTGAATTTAGAGTATCCG 57.103 37.500 0.00 0.00 31.30 4.18
6285 9420 1.940613 GGCAAACATCACCGATCCTAC 59.059 52.381 0.00 0.00 0.00 3.18
6357 9500 0.953471 GTGTTATCGGTGCTGTGCCA 60.953 55.000 0.00 0.00 0.00 4.92
7383 11041 3.127895 CGGAAACAACAAACTTGTGGAGA 59.872 43.478 3.95 0.00 41.31 3.71
7581 11240 5.295950 CAACCAAACAAGTTTCATATGGCA 58.704 37.500 2.13 0.00 0.00 4.92
7608 11267 0.468771 AATGCAGGGGCTAGGAATGC 60.469 55.000 0.00 0.00 41.91 3.56
7610 11269 1.707427 CCTAATGCAGGGGCTAGGAAT 59.293 52.381 0.00 0.00 39.25 3.01
7612 11271 2.854253 CCTAATGCAGGGGCTAGGA 58.146 57.895 0.00 0.00 39.25 2.94
7678 11337 1.000385 ACCAAACGCCATGTTCATGTG 60.000 47.619 11.13 6.43 40.84 3.21
7697 11356 1.003851 ACATGTACGCCGTATGCAAC 58.996 50.000 0.00 0.00 41.33 4.17
7784 11443 3.247411 CAGTTCGTCAGCATTGTTGTGTA 59.753 43.478 0.22 0.00 0.00 2.90
7796 11455 4.693538 TCATCTTCTCTCAGTTCGTCAG 57.306 45.455 0.00 0.00 0.00 3.51
7828 11487 1.009389 GTCAGTTCGTCCTGAAGCCG 61.009 60.000 8.07 0.00 42.81 5.52
7829 11488 1.009389 CGTCAGTTCGTCCTGAAGCC 61.009 60.000 8.07 0.00 42.81 4.35
7831 11490 2.520979 GATCGTCAGTTCGTCCTGAAG 58.479 52.381 8.07 9.94 42.81 3.02
7833 11492 0.809385 GGATCGTCAGTTCGTCCTGA 59.191 55.000 3.24 3.24 39.11 3.86
7834 11493 0.526211 TGGATCGTCAGTTCGTCCTG 59.474 55.000 0.00 0.00 34.61 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.