Multiple sequence alignment - TraesCS2B01G207400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G207400 chr2B 100.000 2476 0 0 1 2476 188024533 188022058 0.000000e+00 4573.0
1 TraesCS2B01G207400 chr2B 97.355 1210 28 3 443 1649 188152221 188151013 0.000000e+00 2054.0
2 TraesCS2B01G207400 chr2B 97.273 1210 30 2 443 1649 188262828 188261619 0.000000e+00 2049.0
3 TraesCS2B01G207400 chr2B 100.000 974 0 0 2886 3859 188021648 188020675 0.000000e+00 1799.0
4 TraesCS2B01G207400 chr2B 98.433 766 7 1 1711 2476 188151012 188150252 0.000000e+00 1343.0
5 TraesCS2B01G207400 chr2B 97.903 620 11 2 3240 3859 188149572 188148955 0.000000e+00 1072.0
6 TraesCS2B01G207400 chr2B 96.290 620 10 3 3240 3859 188255844 188255238 0.000000e+00 1005.0
7 TraesCS2B01G207400 chr2B 96.915 551 16 1 1 550 188263332 188262782 0.000000e+00 922.0
8 TraesCS2B01G207400 chr2B 95.471 552 19 4 1 550 188152722 188152175 0.000000e+00 876.0
9 TraesCS2B01G207400 chr2B 98.571 490 7 0 1711 2200 188261618 188261129 0.000000e+00 867.0
10 TraesCS2B01G207400 chr2B 100.000 309 0 0 4316 4624 188020218 188019910 5.190000e-159 571.0
11 TraesCS2B01G207400 chr2B 100.000 284 0 0 2193 2476 188260943 188260660 4.100000e-145 525.0
12 TraesCS2B01G207400 chr2B 98.522 203 2 1 2892 3094 188256035 188255834 1.580000e-94 357.0
13 TraesCS2B01G207400 chr2B 97.537 203 2 2 2892 3094 188149761 188149562 1.230000e-90 344.0
14 TraesCS2B01G207400 chr2B 96.059 203 5 2 4425 4624 188144651 188144449 1.240000e-85 327.0
15 TraesCS2B01G207400 chr2B 95.074 203 7 2 4425 4624 188250021 188249819 2.690000e-82 316.0
16 TraesCS2B01G207400 chr2B 84.861 251 30 6 569 817 741766042 741766286 3.570000e-61 246.0
17 TraesCS2B01G207400 chr2B 84.462 251 31 6 569 817 741757034 741757278 1.660000e-59 241.0
18 TraesCS2B01G207400 chr2B 95.652 69 2 1 4365 4433 188254964 188254897 4.890000e-20 110.0
19 TraesCS2B01G207400 chr4B 85.778 1561 184 21 934 2466 123920422 123921972 0.000000e+00 1618.0
20 TraesCS2B01G207400 chr4B 87.570 1255 138 6 1230 2469 9462730 9463981 0.000000e+00 1437.0
21 TraesCS2B01G207400 chr4B 79.832 476 73 16 83 554 399951329 399951785 4.460000e-85 326.0
22 TraesCS2B01G207400 chr4B 87.383 214 21 6 3301 3512 123922406 123922615 1.660000e-59 241.0
23 TraesCS2B01G207400 chr4B 89.080 174 17 2 2892 3065 123922228 123922399 1.010000e-51 215.0
24 TraesCS2B01G207400 chr4B 96.899 129 2 1 3117 3243 482658526 482658654 1.010000e-51 215.0
25 TraesCS2B01G207400 chr4B 96.124 129 3 1 3117 3243 207089725 207089597 4.690000e-50 209.0
26 TraesCS2B01G207400 chr4B 96.124 129 3 1 3117 3243 291852344 291852216 4.690000e-50 209.0
27 TraesCS2B01G207400 chr4A 85.479 1577 190 22 922 2469 509225028 509223462 0.000000e+00 1607.0
28 TraesCS2B01G207400 chr4A 85.952 1260 154 12 1224 2469 598453289 598454539 0.000000e+00 1325.0
29 TraesCS2B01G207400 chr4A 83.067 1252 174 22 1244 2469 508838828 508837589 0.000000e+00 1103.0
30 TraesCS2B01G207400 chr4A 90.712 323 26 3 922 1241 508847832 508847511 1.190000e-115 427.0
31 TraesCS2B01G207400 chr4A 89.080 174 17 2 2892 3065 509223208 509223037 1.010000e-51 215.0
32 TraesCS2B01G207400 chr4A 88.506 174 18 2 2892 3065 508837335 508837164 4.690000e-50 209.0
33 TraesCS2B01G207400 chr4D 85.403 1562 189 21 922 2454 86531777 86533328 0.000000e+00 1585.0
34 TraesCS2B01G207400 chr4D 86.332 1017 122 9 922 1928 86312941 86313950 0.000000e+00 1092.0
35 TraesCS2B01G207400 chr4D 86.094 640 78 7 1225 1854 5369287 5369925 0.000000e+00 678.0
36 TraesCS2B01G207400 chr4D 86.916 214 22 6 3301 3512 86058353 86058562 7.730000e-58 235.0
37 TraesCS2B01G207400 chr4D 88.506 174 18 2 2892 3065 86533615 86533786 4.690000e-50 209.0
38 TraesCS2B01G207400 chr4D 92.857 112 8 0 3301 3412 86314714 86314825 3.700000e-36 163.0
39 TraesCS2B01G207400 chr3B 82.020 1535 223 24 968 2468 793104027 793102512 0.000000e+00 1256.0
40 TraesCS2B01G207400 chr3B 87.138 311 32 4 3322 3630 793099936 793099632 3.420000e-91 346.0
41 TraesCS2B01G207400 chr3B 96.124 129 3 1 3117 3243 81167616 81167744 4.690000e-50 209.0
42 TraesCS2B01G207400 chr3B 86.458 96 10 2 3661 3753 793099550 793099455 8.190000e-18 102.0
43 TraesCS2B01G207400 chr3D 82.726 851 125 10 1567 2398 591343493 591344340 0.000000e+00 737.0
44 TraesCS2B01G207400 chr3D 83.125 480 66 11 80 556 213205876 213205409 1.540000e-114 424.0
45 TraesCS2B01G207400 chr3D 89.103 312 31 1 3322 3630 591344963 591345274 7.260000e-103 385.0
46 TraesCS2B01G207400 chr3D 85.657 251 28 6 569 817 213204584 213204340 1.650000e-64 257.0
47 TraesCS2B01G207400 chr3D 90.226 133 12 1 2892 3024 591344813 591344944 6.150000e-39 172.0
48 TraesCS2B01G207400 chr7B 92.053 453 26 4 80 531 251034114 251034557 3.040000e-176 628.0
49 TraesCS2B01G207400 chr7B 93.657 268 15 2 551 818 251035100 251035365 2.590000e-107 399.0
50 TraesCS2B01G207400 chr7B 84.462 251 31 6 569 817 80859449 80859693 1.660000e-59 241.0
51 TraesCS2B01G207400 chr7D 90.337 445 37 5 78 522 385843374 385843812 3.100000e-161 579.0
52 TraesCS2B01G207400 chrUn 96.726 336 9 2 3240 3575 477603320 477602987 4.040000e-155 558.0
53 TraesCS2B01G207400 chrUn 94.815 135 4 2 3117 3248 55739275 55739409 1.690000e-49 207.0
54 TraesCS2B01G207400 chrUn 98.864 88 1 0 3007 3094 477603397 477603310 1.720000e-34 158.0
55 TraesCS2B01G207400 chr6B 89.009 464 34 1 80 543 308568373 308567927 4.040000e-155 558.0
56 TraesCS2B01G207400 chr6B 93.893 262 16 0 556 817 308567581 308567320 3.350000e-106 396.0
57 TraesCS2B01G207400 chr1D 83.160 481 66 11 80 557 18775339 18774871 4.280000e-115 425.0
58 TraesCS2B01G207400 chr1D 82.172 488 66 12 80 557 495006435 495005959 2.590000e-107 399.0
59 TraesCS2B01G207400 chr1D 95.455 44 2 0 3035 3078 281400550 281400593 2.310000e-08 71.3
60 TraesCS2B01G207400 chr3A 80.167 479 72 16 83 557 61559134 61558675 2.060000e-88 337.0
61 TraesCS2B01G207400 chr3A 94.891 137 7 0 3481 3617 721602982 721603118 1.010000e-51 215.0
62 TraesCS2B01G207400 chr3A 96.183 131 3 1 3117 3245 743662151 743662281 3.620000e-51 213.0
63 TraesCS2B01G207400 chr3A 100.000 31 0 0 3301 3331 750351020 750350990 1.800000e-04 58.4
64 TraesCS2B01G207400 chr5D 80.529 416 64 11 1665 2073 450117059 450117464 2.090000e-78 303.0
65 TraesCS2B01G207400 chr2A 91.257 183 16 0 80 262 527618788 527618606 2.760000e-62 250.0
66 TraesCS2B01G207400 chr2A 86.486 222 26 4 79 298 527613693 527613912 1.660000e-59 241.0
67 TraesCS2B01G207400 chr2A 84.462 251 31 6 569 817 527618544 527618788 1.660000e-59 241.0
68 TraesCS2B01G207400 chr2A 95.522 134 4 1 3117 3248 185123271 185123138 3.620000e-51 213.0
69 TraesCS2B01G207400 chr2A 95.455 132 4 1 3117 3246 47763697 47763566 4.690000e-50 209.0
70 TraesCS2B01G207400 chr2A 97.059 34 0 1 3299 3331 16861384 16861351 6.460000e-04 56.5
71 TraesCS2B01G207400 chr6D 84.127 252 27 8 4376 4624 70558660 70558419 1.000000e-56 231.0
72 TraesCS2B01G207400 chr6D 88.710 62 4 3 3028 3086 26404954 26404893 6.420000e-09 73.1
73 TraesCS2B01G207400 chr1B 96.183 131 3 1 3117 3245 388769053 388768923 3.620000e-51 213.0
74 TraesCS2B01G207400 chr5A 77.946 331 61 7 1743 2072 569436857 569437176 3.650000e-46 196.0
75 TraesCS2B01G207400 chr5B 96.970 33 0 1 3299 3331 510229589 510229558 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G207400 chr2B 188019910 188024533 4623 True 2314.333333 4573 100.000000 1 4624 3 chr2B.!!$R3 4623
1 TraesCS2B01G207400 chr2B 188148955 188152722 3767 True 1137.800000 2054 97.339800 1 3859 5 chr2B.!!$R4 3858
2 TraesCS2B01G207400 chr2B 188260660 188263332 2672 True 1090.750000 2049 98.189750 1 2476 4 chr2B.!!$R6 2475
3 TraesCS2B01G207400 chr2B 188254897 188256035 1138 True 490.666667 1005 96.821333 2892 4433 3 chr2B.!!$R5 1541
4 TraesCS2B01G207400 chr4B 9462730 9463981 1251 False 1437.000000 1437 87.570000 1230 2469 1 chr4B.!!$F1 1239
5 TraesCS2B01G207400 chr4B 123920422 123922615 2193 False 691.333333 1618 87.413667 934 3512 3 chr4B.!!$F4 2578
6 TraesCS2B01G207400 chr4A 598453289 598454539 1250 False 1325.000000 1325 85.952000 1224 2469 1 chr4A.!!$F1 1245
7 TraesCS2B01G207400 chr4A 509223037 509225028 1991 True 911.000000 1607 87.279500 922 3065 2 chr4A.!!$R3 2143
8 TraesCS2B01G207400 chr4A 508837164 508838828 1664 True 656.000000 1103 85.786500 1244 3065 2 chr4A.!!$R2 1821
9 TraesCS2B01G207400 chr4D 86531777 86533786 2009 False 897.000000 1585 86.954500 922 3065 2 chr4D.!!$F4 2143
10 TraesCS2B01G207400 chr4D 5369287 5369925 638 False 678.000000 678 86.094000 1225 1854 1 chr4D.!!$F1 629
11 TraesCS2B01G207400 chr4D 86312941 86314825 1884 False 627.500000 1092 89.594500 922 3412 2 chr4D.!!$F3 2490
12 TraesCS2B01G207400 chr3B 793099455 793104027 4572 True 568.000000 1256 85.205333 968 3753 3 chr3B.!!$R1 2785
13 TraesCS2B01G207400 chr3D 591343493 591345274 1781 False 431.333333 737 87.351667 1567 3630 3 chr3D.!!$F1 2063
14 TraesCS2B01G207400 chr3D 213204340 213205876 1536 True 340.500000 424 84.391000 80 817 2 chr3D.!!$R1 737
15 TraesCS2B01G207400 chr7B 251034114 251035365 1251 False 513.500000 628 92.855000 80 818 2 chr7B.!!$F2 738
16 TraesCS2B01G207400 chr6B 308567320 308568373 1053 True 477.000000 558 91.451000 80 817 2 chr6B.!!$R1 737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
402 405 0.179137 CGAGCTACATGAACTCGCCA 60.179 55.000 18.48 0.0 45.67 5.69 F
564 1780 1.733041 CCTCGCGTCGCTTTTCTCA 60.733 57.895 16.36 0.0 0.00 3.27 F
1687 2940 0.387622 CATTGTGCGCAAACCTGAGG 60.388 55.000 17.92 0.0 38.21 3.86 F
1696 2949 0.036732 CAAACCTGAGGGCAGCTACA 59.963 55.000 2.38 0.0 40.91 2.74 F
1701 2954 0.106335 CTGAGGGCAGCTACATCCTG 59.894 60.000 0.00 0.0 34.95 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1433 2669 1.090052 GGTGACGTGGAAGCATAGGC 61.090 60.000 0.00 0.00 41.61 3.93 R
1696 2949 2.196997 TTAGCTTGTGCGGCCAGGAT 62.197 55.000 2.24 0.00 45.42 3.24 R
3150 6897 0.168348 TGAGCTTAGTGTCGACTCGC 59.832 55.000 17.92 11.93 33.21 5.03 R
3416 7165 0.181824 ACCCAACTTTGTAGCACGGT 59.818 50.000 0.00 0.00 0.00 4.83 R
4315 8123 3.080300 ACAACAAACTTGTGGAGGACA 57.920 42.857 3.95 0.00 41.31 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
249 252 2.727123 TTCTGGCACTTGAAAGGACA 57.273 45.000 0.00 0.00 0.00 4.02
298 301 0.667993 CAATGCGTTTGTGGTCTGGT 59.332 50.000 0.00 0.00 0.00 4.00
402 405 0.179137 CGAGCTACATGAACTCGCCA 60.179 55.000 18.48 0.00 45.67 5.69
540 919 2.661537 CTGCACGCTCCGACACAA 60.662 61.111 0.00 0.00 0.00 3.33
564 1780 1.733041 CCTCGCGTCGCTTTTCTCA 60.733 57.895 16.36 0.00 0.00 3.27
781 1997 5.529430 TCTTGAGAGTGGCAATTTTACGAAA 59.471 36.000 0.00 0.00 0.00 3.46
1335 2571 2.668550 GCCTTCTTTGCCGACCGT 60.669 61.111 0.00 0.00 0.00 4.83
1687 2940 0.387622 CATTGTGCGCAAACCTGAGG 60.388 55.000 17.92 0.00 38.21 3.86
1696 2949 0.036732 CAAACCTGAGGGCAGCTACA 59.963 55.000 2.38 0.00 40.91 2.74
1701 2954 0.106335 CTGAGGGCAGCTACATCCTG 59.894 60.000 0.00 0.00 34.95 3.86
1736 2995 3.949586 TGGGTTCAGATATGGCAATCA 57.050 42.857 0.00 0.00 0.00 2.57
1896 3157 4.040829 TGGGTTGATCTCTCGCATATGATT 59.959 41.667 6.97 0.00 0.00 2.57
2079 3349 3.432749 GGAGCATCAAGACTGGCATCTTA 60.433 47.826 10.46 3.29 36.78 2.10
3097 6844 8.959734 CAATATCTACACATATTGGTTGCATG 57.040 34.615 5.59 0.00 40.74 4.06
3098 6845 7.692460 ATATCTACACATATTGGTTGCATGG 57.308 36.000 0.00 0.00 0.00 3.66
3099 6846 4.854173 TCTACACATATTGGTTGCATGGT 58.146 39.130 0.00 0.00 0.00 3.55
3100 6847 5.260424 TCTACACATATTGGTTGCATGGTT 58.740 37.500 0.00 0.00 0.00 3.67
3101 6848 4.888326 ACACATATTGGTTGCATGGTTT 57.112 36.364 0.00 0.00 0.00 3.27
3102 6849 5.226194 ACACATATTGGTTGCATGGTTTT 57.774 34.783 0.00 0.00 0.00 2.43
3103 6850 5.237048 ACACATATTGGTTGCATGGTTTTC 58.763 37.500 0.00 0.00 0.00 2.29
3104 6851 4.326817 CACATATTGGTTGCATGGTTTTCG 59.673 41.667 0.00 0.00 0.00 3.46
3105 6852 4.219507 ACATATTGGTTGCATGGTTTTCGA 59.780 37.500 0.00 0.00 0.00 3.71
3106 6853 2.791383 TTGGTTGCATGGTTTTCGAG 57.209 45.000 0.00 0.00 0.00 4.04
3107 6854 1.686355 TGGTTGCATGGTTTTCGAGT 58.314 45.000 0.00 0.00 0.00 4.18
3108 6855 1.606668 TGGTTGCATGGTTTTCGAGTC 59.393 47.619 0.00 0.00 0.00 3.36
3109 6856 1.399727 GGTTGCATGGTTTTCGAGTCG 60.400 52.381 6.09 6.09 0.00 4.18
3110 6857 0.237235 TTGCATGGTTTTCGAGTCGC 59.763 50.000 7.92 0.00 0.00 5.19
3111 6858 1.225745 GCATGGTTTTCGAGTCGCG 60.226 57.895 7.92 0.00 42.69 5.87
3122 6869 3.501548 AGTCGCGACTCTCGAGCC 61.502 66.667 34.98 7.77 43.74 4.70
3123 6870 3.501548 GTCGCGACTCTCGAGCCT 61.502 66.667 31.12 0.00 43.74 4.58
3124 6871 3.500642 TCGCGACTCTCGAGCCTG 61.501 66.667 3.71 2.93 43.74 4.85
3127 6874 3.805307 CGACTCTCGAGCCTGCGT 61.805 66.667 7.81 0.00 43.74 5.24
3128 6875 2.569134 GACTCTCGAGCCTGCGTT 59.431 61.111 7.81 0.00 0.00 4.84
3129 6876 1.515304 GACTCTCGAGCCTGCGTTC 60.515 63.158 7.81 0.00 0.00 3.95
3130 6877 1.928706 GACTCTCGAGCCTGCGTTCT 61.929 60.000 7.81 0.00 0.00 3.01
3131 6878 1.515952 CTCTCGAGCCTGCGTTCTG 60.516 63.158 7.81 0.00 0.00 3.02
3132 6879 1.927608 CTCTCGAGCCTGCGTTCTGA 61.928 60.000 7.81 0.00 0.00 3.27
3133 6880 1.803519 CTCGAGCCTGCGTTCTGAC 60.804 63.158 0.00 0.00 0.00 3.51
3134 6881 2.206515 CTCGAGCCTGCGTTCTGACT 62.207 60.000 0.00 0.00 0.00 3.41
3135 6882 0.958876 TCGAGCCTGCGTTCTGACTA 60.959 55.000 0.00 0.00 0.00 2.59
3136 6883 0.524392 CGAGCCTGCGTTCTGACTAG 60.524 60.000 0.00 0.00 0.00 2.57
3137 6884 0.528470 GAGCCTGCGTTCTGACTAGT 59.472 55.000 0.00 0.00 0.00 2.57
3138 6885 0.528470 AGCCTGCGTTCTGACTAGTC 59.472 55.000 16.32 16.32 0.00 2.59
3139 6886 0.798771 GCCTGCGTTCTGACTAGTCG 60.799 60.000 17.85 12.43 0.00 4.18
3140 6887 0.798771 CCTGCGTTCTGACTAGTCGC 60.799 60.000 17.85 17.10 42.98 5.19
3141 6888 1.128724 CTGCGTTCTGACTAGTCGCG 61.129 60.000 17.85 18.07 44.28 5.87
3142 6889 1.134075 GCGTTCTGACTAGTCGCGA 59.866 57.895 23.37 3.71 38.02 5.87
3143 6890 1.126996 GCGTTCTGACTAGTCGCGAC 61.127 60.000 31.30 31.30 38.02 5.19
3144 6891 0.443088 CGTTCTGACTAGTCGCGACT 59.557 55.000 40.17 40.17 45.02 4.18
3145 6892 1.527389 CGTTCTGACTAGTCGCGACTC 60.527 57.143 42.28 28.88 42.54 3.36
3146 6893 1.463831 GTTCTGACTAGTCGCGACTCA 59.536 52.381 42.28 31.52 42.54 3.41
3147 6894 1.360820 TCTGACTAGTCGCGACTCAG 58.639 55.000 42.28 37.32 42.54 3.35
3148 6895 1.080298 CTGACTAGTCGCGACTCAGT 58.920 55.000 42.28 36.23 42.54 3.41
3149 6896 1.061421 CTGACTAGTCGCGACTCAGTC 59.939 57.143 38.05 38.05 42.54 3.51
3166 6913 1.134075 TCGCGAGTCGACACTAAGC 59.866 57.895 18.61 13.51 43.16 3.09
3167 6914 1.134901 CGCGAGTCGACACTAAGCT 59.865 57.895 18.61 0.00 41.67 3.74
3168 6915 0.858135 CGCGAGTCGACACTAAGCTC 60.858 60.000 18.61 3.39 41.67 4.09
3169 6916 0.168348 GCGAGTCGACACTAAGCTCA 59.832 55.000 18.61 0.00 34.91 4.26
3170 6917 1.792273 GCGAGTCGACACTAAGCTCAG 60.792 57.143 18.61 2.83 34.91 3.35
3171 6918 1.465387 CGAGTCGACACTAAGCTCAGT 59.535 52.381 19.50 0.00 30.63 3.41
3172 6919 2.474856 CGAGTCGACACTAAGCTCAGTC 60.475 54.545 19.50 0.51 30.63 3.51
3176 6923 2.265647 GACACTAAGCTCAGTCGACC 57.734 55.000 13.01 0.00 0.00 4.79
3177 6924 1.540267 GACACTAAGCTCAGTCGACCA 59.460 52.381 13.01 0.00 0.00 4.02
3178 6925 2.164624 GACACTAAGCTCAGTCGACCAT 59.835 50.000 13.01 0.00 0.00 3.55
3179 6926 3.353557 ACACTAAGCTCAGTCGACCATA 58.646 45.455 13.01 0.00 0.00 2.74
3180 6927 3.954904 ACACTAAGCTCAGTCGACCATAT 59.045 43.478 13.01 0.00 0.00 1.78
3181 6928 4.402793 ACACTAAGCTCAGTCGACCATATT 59.597 41.667 13.01 3.99 0.00 1.28
3182 6929 5.105310 ACACTAAGCTCAGTCGACCATATTT 60.105 40.000 13.01 4.77 0.00 1.40
3183 6930 5.812642 CACTAAGCTCAGTCGACCATATTTT 59.187 40.000 13.01 3.16 0.00 1.82
3184 6931 6.313905 CACTAAGCTCAGTCGACCATATTTTT 59.686 38.462 13.01 1.53 0.00 1.94
3185 6932 5.551760 AAGCTCAGTCGACCATATTTTTG 57.448 39.130 13.01 1.00 0.00 2.44
3186 6933 3.375299 AGCTCAGTCGACCATATTTTTGC 59.625 43.478 13.01 4.34 0.00 3.68
3187 6934 3.785505 GCTCAGTCGACCATATTTTTGCG 60.786 47.826 13.01 0.00 0.00 4.85
3188 6935 3.591023 TCAGTCGACCATATTTTTGCGA 58.409 40.909 13.01 0.00 0.00 5.10
3189 6936 3.369756 TCAGTCGACCATATTTTTGCGAC 59.630 43.478 13.01 0.00 45.83 5.19
3191 6938 3.924610 GTCGACCATATTTTTGCGACTC 58.075 45.455 3.51 0.00 43.18 3.36
3192 6939 3.369756 GTCGACCATATTTTTGCGACTCA 59.630 43.478 3.51 0.00 43.18 3.41
3193 6940 4.034048 GTCGACCATATTTTTGCGACTCAT 59.966 41.667 3.51 0.00 43.18 2.90
3194 6941 5.233476 GTCGACCATATTTTTGCGACTCATA 59.767 40.000 3.51 0.00 43.18 2.15
3195 6942 5.462068 TCGACCATATTTTTGCGACTCATAG 59.538 40.000 0.00 0.00 0.00 2.23
3196 6943 5.462068 CGACCATATTTTTGCGACTCATAGA 59.538 40.000 0.00 0.00 0.00 1.98
3197 6944 6.562270 CGACCATATTTTTGCGACTCATAGAC 60.562 42.308 0.00 0.00 0.00 2.59
3198 6945 6.349300 ACCATATTTTTGCGACTCATAGACT 58.651 36.000 0.00 0.00 0.00 3.24
3199 6946 7.497595 ACCATATTTTTGCGACTCATAGACTA 58.502 34.615 0.00 0.00 0.00 2.59
3200 6947 7.653713 ACCATATTTTTGCGACTCATAGACTAG 59.346 37.037 0.00 0.00 0.00 2.57
3201 6948 7.653713 CCATATTTTTGCGACTCATAGACTAGT 59.346 37.037 0.00 0.00 0.00 2.57
3202 6949 8.695284 CATATTTTTGCGACTCATAGACTAGTC 58.305 37.037 15.41 15.41 39.00 2.59
3240 6987 1.710013 GTCGAGCGACTCAAAATCCA 58.290 50.000 15.13 0.00 41.57 3.41
3241 6988 2.271800 GTCGAGCGACTCAAAATCCAT 58.728 47.619 15.13 0.00 41.57 3.41
3242 6989 2.029728 GTCGAGCGACTCAAAATCCATG 59.970 50.000 15.13 0.00 41.57 3.66
3272 7019 8.548721 GGTTGTAATAACATACTTCCTTCATCG 58.451 37.037 0.00 0.00 34.97 3.84
3444 7193 4.947388 GCTACAAAGTTGGGTATGGATCAA 59.053 41.667 0.00 0.00 0.00 2.57
4337 8145 4.590918 TGTCCTCCACAAGTTTGTTGTTA 58.409 39.130 0.00 0.00 39.91 2.41
4358 8166 2.554032 ACCGTCTGCTTGAATTTTCTGG 59.446 45.455 0.00 0.00 0.00 3.86
4361 8169 3.250762 CGTCTGCTTGAATTTTCTGGACA 59.749 43.478 0.00 0.00 0.00 4.02
4362 8170 4.261155 CGTCTGCTTGAATTTTCTGGACAA 60.261 41.667 0.00 0.00 0.00 3.18
4363 8171 5.218139 GTCTGCTTGAATTTTCTGGACAAG 58.782 41.667 0.00 0.00 40.24 3.16
4429 8281 7.936847 TCATGATGTGTTTAGTGGAAACTAAGT 59.063 33.333 0.00 0.00 46.53 2.24
4431 8283 6.485313 TGATGTGTTTAGTGGAAACTAAGTGG 59.515 38.462 2.23 0.00 46.53 4.00
4432 8284 4.577283 TGTGTTTAGTGGAAACTAAGTGGC 59.423 41.667 2.23 0.00 46.53 5.01
4433 8285 4.023450 GTGTTTAGTGGAAACTAAGTGGCC 60.023 45.833 0.00 0.00 46.53 5.36
4434 8286 4.139038 GTTTAGTGGAAACTAAGTGGCCA 58.861 43.478 0.00 0.00 43.58 5.36
4435 8287 6.435474 TGTTTAGTGGAAACTAAGTGGCCAC 61.435 44.000 29.22 29.22 46.53 5.01
4436 8288 1.244816 GTGGAAACTAAGTGGCCACC 58.755 55.000 32.29 15.04 42.37 4.61
4437 8289 1.145571 TGGAAACTAAGTGGCCACCT 58.854 50.000 32.29 22.79 0.00 4.00
4438 8290 1.497286 TGGAAACTAAGTGGCCACCTT 59.503 47.619 32.29 24.94 0.00 3.50
4439 8291 2.712087 TGGAAACTAAGTGGCCACCTTA 59.288 45.455 32.29 24.73 0.00 2.69
4440 8292 3.332485 TGGAAACTAAGTGGCCACCTTAT 59.668 43.478 32.29 18.05 0.00 1.73
4441 8293 3.694566 GGAAACTAAGTGGCCACCTTATG 59.305 47.826 32.29 19.19 0.00 1.90
4442 8294 2.420058 ACTAAGTGGCCACCTTATGC 57.580 50.000 32.29 5.60 0.00 3.14
4443 8295 1.633432 ACTAAGTGGCCACCTTATGCA 59.367 47.619 32.29 9.63 0.00 3.96
4444 8296 2.041081 ACTAAGTGGCCACCTTATGCAA 59.959 45.455 32.29 9.29 0.00 4.08
4445 8297 2.008242 AAGTGGCCACCTTATGCAAA 57.992 45.000 32.29 0.00 0.00 3.68
4446 8298 2.236489 AGTGGCCACCTTATGCAAAT 57.764 45.000 32.29 6.70 0.00 2.32
4447 8299 2.102578 AGTGGCCACCTTATGCAAATC 58.897 47.619 32.29 2.23 0.00 2.17
4448 8300 2.102578 GTGGCCACCTTATGCAAATCT 58.897 47.619 26.31 0.00 0.00 2.40
4449 8301 2.101783 TGGCCACCTTATGCAAATCTG 58.898 47.619 0.00 0.00 0.00 2.90
4464 8316 5.597813 CAAATCTGCAGTTAGAGAACGTT 57.402 39.130 14.67 0.00 40.76 3.99
4465 8317 5.990408 CAAATCTGCAGTTAGAGAACGTTT 58.010 37.500 14.67 0.00 40.76 3.60
4466 8318 5.847670 AATCTGCAGTTAGAGAACGTTTC 57.152 39.130 14.67 2.25 40.76 2.78
4467 8319 4.585955 TCTGCAGTTAGAGAACGTTTCT 57.414 40.909 14.67 9.93 44.21 2.52
4468 8320 4.299155 TCTGCAGTTAGAGAACGTTTCTG 58.701 43.478 14.67 13.07 40.87 3.02
4469 8321 4.037565 TCTGCAGTTAGAGAACGTTTCTGA 59.962 41.667 14.67 10.39 40.87 3.27
4470 8322 4.883083 TGCAGTTAGAGAACGTTTCTGAT 58.117 39.130 17.66 5.71 40.87 2.90
4471 8323 4.686091 TGCAGTTAGAGAACGTTTCTGATG 59.314 41.667 17.66 14.46 40.87 3.07
4472 8324 4.923871 GCAGTTAGAGAACGTTTCTGATGA 59.076 41.667 17.66 1.81 40.87 2.92
4473 8325 5.164041 GCAGTTAGAGAACGTTTCTGATGAC 60.164 44.000 17.66 12.40 40.87 3.06
4474 8326 5.346281 CAGTTAGAGAACGTTTCTGATGACC 59.654 44.000 17.66 0.00 40.87 4.02
4475 8327 5.010719 AGTTAGAGAACGTTTCTGATGACCA 59.989 40.000 17.66 0.47 40.87 4.02
4476 8328 4.336889 AGAGAACGTTTCTGATGACCAA 57.663 40.909 0.46 0.00 40.87 3.67
4477 8329 4.703897 AGAGAACGTTTCTGATGACCAAA 58.296 39.130 0.46 0.00 40.87 3.28
4478 8330 4.752101 AGAGAACGTTTCTGATGACCAAAG 59.248 41.667 0.46 0.00 40.87 2.77
4479 8331 4.703897 AGAACGTTTCTGATGACCAAAGA 58.296 39.130 0.46 0.00 38.91 2.52
4480 8332 5.123227 AGAACGTTTCTGATGACCAAAGAA 58.877 37.500 0.46 0.00 38.91 2.52
4481 8333 5.588648 AGAACGTTTCTGATGACCAAAGAAA 59.411 36.000 0.46 6.98 38.91 2.52
4482 8334 5.424121 ACGTTTCTGATGACCAAAGAAAG 57.576 39.130 9.90 7.98 39.81 2.62
4483 8335 5.123227 ACGTTTCTGATGACCAAAGAAAGA 58.877 37.500 9.90 0.00 39.81 2.52
4484 8336 5.765182 ACGTTTCTGATGACCAAAGAAAGAT 59.235 36.000 9.90 2.40 39.81 2.40
4485 8337 6.082338 CGTTTCTGATGACCAAAGAAAGATG 58.918 40.000 9.90 3.28 39.81 2.90
4486 8338 5.633830 TTCTGATGACCAAAGAAAGATGC 57.366 39.130 0.00 0.00 0.00 3.91
4487 8339 4.654915 TCTGATGACCAAAGAAAGATGCA 58.345 39.130 0.00 0.00 0.00 3.96
4488 8340 5.258841 TCTGATGACCAAAGAAAGATGCAT 58.741 37.500 0.00 0.00 0.00 3.96
4489 8341 5.713389 TCTGATGACCAAAGAAAGATGCATT 59.287 36.000 0.00 0.00 0.00 3.56
4490 8342 6.209986 TCTGATGACCAAAGAAAGATGCATTT 59.790 34.615 0.00 0.00 0.00 2.32
4491 8343 7.394077 TCTGATGACCAAAGAAAGATGCATTTA 59.606 33.333 0.00 0.00 0.00 1.40
4492 8344 7.894708 TGATGACCAAAGAAAGATGCATTTAA 58.105 30.769 0.00 0.00 0.00 1.52
4493 8345 8.366401 TGATGACCAAAGAAAGATGCATTTAAA 58.634 29.630 0.00 0.00 0.00 1.52
4494 8346 9.206870 GATGACCAAAGAAAGATGCATTTAAAA 57.793 29.630 0.00 0.00 0.00 1.52
4495 8347 8.954950 TGACCAAAGAAAGATGCATTTAAAAA 57.045 26.923 0.00 0.00 0.00 1.94
4496 8348 9.558396 TGACCAAAGAAAGATGCATTTAAAAAT 57.442 25.926 0.00 0.00 0.00 1.82
4499 8351 9.977762 CCAAAGAAAGATGCATTTAAAAATAGC 57.022 29.630 0.00 0.00 0.00 2.97
4510 8362 7.830940 CATTTAAAAATAGCAATGCAGACCA 57.169 32.000 8.35 0.00 0.00 4.02
4511 8363 7.902032 CATTTAAAAATAGCAATGCAGACCAG 58.098 34.615 8.35 0.00 0.00 4.00
4512 8364 6.588719 TTAAAAATAGCAATGCAGACCAGT 57.411 33.333 8.35 0.00 0.00 4.00
4513 8365 5.473066 AAAAATAGCAATGCAGACCAGTT 57.527 34.783 8.35 0.00 0.00 3.16
4514 8366 4.445452 AAATAGCAATGCAGACCAGTTG 57.555 40.909 8.35 0.00 0.00 3.16
4515 8367 1.167851 TAGCAATGCAGACCAGTTGC 58.832 50.000 8.35 11.57 45.37 4.17
4516 8368 1.080298 GCAATGCAGACCAGTTGCC 60.080 57.895 8.88 0.00 40.66 4.52
4517 8369 1.808531 GCAATGCAGACCAGTTGCCA 61.809 55.000 8.88 0.00 40.66 4.92
4518 8370 0.892755 CAATGCAGACCAGTTGCCAT 59.107 50.000 0.00 0.00 40.81 4.40
4519 8371 2.093890 CAATGCAGACCAGTTGCCATA 58.906 47.619 0.00 0.00 40.81 2.74
4520 8372 2.492881 CAATGCAGACCAGTTGCCATAA 59.507 45.455 0.00 0.00 40.81 1.90
4521 8373 2.284754 TGCAGACCAGTTGCCATAAA 57.715 45.000 0.00 0.00 40.81 1.40
4522 8374 2.591923 TGCAGACCAGTTGCCATAAAA 58.408 42.857 0.00 0.00 40.81 1.52
4523 8375 2.961741 TGCAGACCAGTTGCCATAAAAA 59.038 40.909 0.00 0.00 40.81 1.94
4524 8376 3.577848 TGCAGACCAGTTGCCATAAAAAT 59.422 39.130 0.00 0.00 40.81 1.82
4525 8377 3.928375 GCAGACCAGTTGCCATAAAAATG 59.072 43.478 0.00 0.00 35.54 2.32
4526 8378 4.561326 GCAGACCAGTTGCCATAAAAATGT 60.561 41.667 0.00 0.00 35.54 2.71
4527 8379 5.163513 CAGACCAGTTGCCATAAAAATGTC 58.836 41.667 0.00 0.00 0.00 3.06
4528 8380 5.047802 CAGACCAGTTGCCATAAAAATGTCT 60.048 40.000 0.00 0.00 0.00 3.41
4529 8381 5.539955 AGACCAGTTGCCATAAAAATGTCTT 59.460 36.000 0.00 0.00 0.00 3.01
4530 8382 6.041979 AGACCAGTTGCCATAAAAATGTCTTT 59.958 34.615 0.00 0.00 0.00 2.52
4531 8383 5.990996 ACCAGTTGCCATAAAAATGTCTTTG 59.009 36.000 0.00 0.00 0.00 2.77
4532 8384 5.106987 CCAGTTGCCATAAAAATGTCTTTGC 60.107 40.000 0.00 0.00 0.00 3.68
4533 8385 5.466058 CAGTTGCCATAAAAATGTCTTTGCA 59.534 36.000 0.00 0.00 0.00 4.08
4534 8386 6.018098 CAGTTGCCATAAAAATGTCTTTGCAA 60.018 34.615 0.00 0.00 34.19 4.08
4535 8387 5.921004 TGCCATAAAAATGTCTTTGCAAC 57.079 34.783 0.00 0.00 0.00 4.17
4536 8388 5.609423 TGCCATAAAAATGTCTTTGCAACT 58.391 33.333 0.00 0.00 0.00 3.16
4537 8389 5.695816 TGCCATAAAAATGTCTTTGCAACTC 59.304 36.000 0.00 0.00 0.00 3.01
4538 8390 5.928264 GCCATAAAAATGTCTTTGCAACTCT 59.072 36.000 0.00 0.00 0.00 3.24
4539 8391 6.089954 GCCATAAAAATGTCTTTGCAACTCTC 59.910 38.462 0.00 0.00 0.00 3.20
4540 8392 7.373493 CCATAAAAATGTCTTTGCAACTCTCT 58.627 34.615 0.00 0.00 0.00 3.10
4541 8393 7.869429 CCATAAAAATGTCTTTGCAACTCTCTT 59.131 33.333 0.00 0.00 0.00 2.85
4542 8394 8.697067 CATAAAAATGTCTTTGCAACTCTCTTG 58.303 33.333 0.00 0.00 0.00 3.02
4543 8395 6.455360 AAAATGTCTTTGCAACTCTCTTGA 57.545 33.333 0.00 0.00 0.00 3.02
4544 8396 6.645790 AAATGTCTTTGCAACTCTCTTGAT 57.354 33.333 0.00 0.00 0.00 2.57
4545 8397 7.750229 AAATGTCTTTGCAACTCTCTTGATA 57.250 32.000 0.00 0.00 0.00 2.15
4546 8398 7.934855 AATGTCTTTGCAACTCTCTTGATAT 57.065 32.000 0.00 0.00 0.00 1.63
4547 8399 6.732531 TGTCTTTGCAACTCTCTTGATATG 57.267 37.500 0.00 0.00 0.00 1.78
4548 8400 6.233434 TGTCTTTGCAACTCTCTTGATATGT 58.767 36.000 0.00 0.00 0.00 2.29
4549 8401 6.148315 TGTCTTTGCAACTCTCTTGATATGTG 59.852 38.462 0.00 0.00 0.00 3.21
4550 8402 5.645067 TCTTTGCAACTCTCTTGATATGTGG 59.355 40.000 0.00 0.00 0.00 4.17
4551 8403 3.273434 TGCAACTCTCTTGATATGTGGC 58.727 45.455 0.00 0.00 0.00 5.01
4552 8404 3.273434 GCAACTCTCTTGATATGTGGCA 58.727 45.455 0.00 0.00 0.00 4.92
4553 8405 3.311871 GCAACTCTCTTGATATGTGGCAG 59.688 47.826 0.00 0.00 0.00 4.85
4554 8406 4.763073 CAACTCTCTTGATATGTGGCAGA 58.237 43.478 0.00 0.00 0.00 4.26
4555 8407 5.181009 CAACTCTCTTGATATGTGGCAGAA 58.819 41.667 0.00 0.00 0.00 3.02
4556 8408 5.021033 ACTCTCTTGATATGTGGCAGAAG 57.979 43.478 0.00 0.00 0.00 2.85
4557 8409 4.713814 ACTCTCTTGATATGTGGCAGAAGA 59.286 41.667 0.00 0.00 0.00 2.87
4558 8410 5.188555 ACTCTCTTGATATGTGGCAGAAGAA 59.811 40.000 0.00 0.00 0.00 2.52
4559 8411 5.668471 TCTCTTGATATGTGGCAGAAGAAG 58.332 41.667 0.00 0.00 0.00 2.85
4560 8412 5.423290 TCTCTTGATATGTGGCAGAAGAAGA 59.577 40.000 0.00 0.00 0.00 2.87
4561 8413 5.668471 TCTTGATATGTGGCAGAAGAAGAG 58.332 41.667 0.00 0.00 0.00 2.85
4562 8414 5.188555 TCTTGATATGTGGCAGAAGAAGAGT 59.811 40.000 0.00 0.00 0.00 3.24
4563 8415 6.381133 TCTTGATATGTGGCAGAAGAAGAGTA 59.619 38.462 0.00 0.00 0.00 2.59
4564 8416 6.544928 TGATATGTGGCAGAAGAAGAGTAA 57.455 37.500 0.00 0.00 0.00 2.24
4565 8417 6.946340 TGATATGTGGCAGAAGAAGAGTAAA 58.054 36.000 0.00 0.00 0.00 2.01
4566 8418 7.394016 TGATATGTGGCAGAAGAAGAGTAAAA 58.606 34.615 0.00 0.00 0.00 1.52
4567 8419 8.049117 TGATATGTGGCAGAAGAAGAGTAAAAT 58.951 33.333 0.00 0.00 0.00 1.82
4568 8420 8.814038 ATATGTGGCAGAAGAAGAGTAAAATT 57.186 30.769 0.00 0.00 0.00 1.82
4569 8421 9.905713 ATATGTGGCAGAAGAAGAGTAAAATTA 57.094 29.630 0.00 0.00 0.00 1.40
4570 8422 7.672983 TGTGGCAGAAGAAGAGTAAAATTAG 57.327 36.000 0.00 0.00 0.00 1.73
4571 8423 7.224297 TGTGGCAGAAGAAGAGTAAAATTAGT 58.776 34.615 0.00 0.00 0.00 2.24
4572 8424 7.719633 TGTGGCAGAAGAAGAGTAAAATTAGTT 59.280 33.333 0.00 0.00 0.00 2.24
4573 8425 8.568794 GTGGCAGAAGAAGAGTAAAATTAGTTT 58.431 33.333 0.00 0.00 0.00 2.66
4574 8426 9.131791 TGGCAGAAGAAGAGTAAAATTAGTTTT 57.868 29.630 1.35 1.35 40.48 2.43
4595 8447 7.860872 AGTTTTACAAGTAGCAAAGTTACATGC 59.139 33.333 5.24 5.24 42.87 4.06
4596 8448 4.766404 ACAAGTAGCAAAGTTACATGCC 57.234 40.909 9.04 0.00 43.57 4.40
4597 8449 4.141287 ACAAGTAGCAAAGTTACATGCCA 58.859 39.130 9.04 0.00 43.57 4.92
4598 8450 4.216257 ACAAGTAGCAAAGTTACATGCCAG 59.784 41.667 9.04 0.20 43.57 4.85
4599 8451 4.286297 AGTAGCAAAGTTACATGCCAGA 57.714 40.909 9.04 0.00 43.57 3.86
4600 8452 4.651778 AGTAGCAAAGTTACATGCCAGAA 58.348 39.130 9.04 0.00 43.57 3.02
4601 8453 3.923017 AGCAAAGTTACATGCCAGAAC 57.077 42.857 9.04 0.00 43.57 3.01
4602 8454 3.490348 AGCAAAGTTACATGCCAGAACT 58.510 40.909 9.04 0.00 43.57 3.01
4603 8455 4.651778 AGCAAAGTTACATGCCAGAACTA 58.348 39.130 9.04 0.00 43.57 2.24
4604 8456 5.070001 AGCAAAGTTACATGCCAGAACTAA 58.930 37.500 9.04 0.00 43.57 2.24
4605 8457 5.711976 AGCAAAGTTACATGCCAGAACTAAT 59.288 36.000 9.04 0.00 43.57 1.73
4606 8458 6.209391 AGCAAAGTTACATGCCAGAACTAATT 59.791 34.615 9.04 0.00 43.57 1.40
4607 8459 7.393234 AGCAAAGTTACATGCCAGAACTAATTA 59.607 33.333 9.04 0.00 43.57 1.40
4608 8460 8.190784 GCAAAGTTACATGCCAGAACTAATTAT 58.809 33.333 0.00 0.00 36.56 1.28
4611 8463 8.608844 AGTTACATGCCAGAACTAATTATAGC 57.391 34.615 0.00 0.00 31.69 2.97
4612 8464 8.210946 AGTTACATGCCAGAACTAATTATAGCA 58.789 33.333 0.00 0.00 31.69 3.49
4613 8465 8.499162 GTTACATGCCAGAACTAATTATAGCAG 58.501 37.037 0.00 0.00 31.96 4.24
4614 8466 6.830912 ACATGCCAGAACTAATTATAGCAGA 58.169 36.000 0.00 0.00 31.96 4.26
4615 8467 6.708054 ACATGCCAGAACTAATTATAGCAGAC 59.292 38.462 0.00 0.00 31.96 3.51
4616 8468 6.233905 TGCCAGAACTAATTATAGCAGACA 57.766 37.500 0.00 0.00 31.96 3.41
4617 8469 6.649155 TGCCAGAACTAATTATAGCAGACAA 58.351 36.000 0.00 0.00 31.96 3.18
4618 8470 7.282585 TGCCAGAACTAATTATAGCAGACAAT 58.717 34.615 0.00 0.00 31.96 2.71
4619 8471 7.227314 TGCCAGAACTAATTATAGCAGACAATG 59.773 37.037 0.00 0.00 31.96 2.82
4620 8472 7.442364 GCCAGAACTAATTATAGCAGACAATGA 59.558 37.037 0.00 0.00 31.96 2.57
4621 8473 8.768955 CCAGAACTAATTATAGCAGACAATGAC 58.231 37.037 0.00 0.00 31.96 3.06
4622 8474 8.483218 CAGAACTAATTATAGCAGACAATGACG 58.517 37.037 0.00 0.00 31.96 4.35
4623 8475 8.414003 AGAACTAATTATAGCAGACAATGACGA 58.586 33.333 0.00 0.00 31.96 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 143 3.557228 AGGTGGCATTTTTGCAAAGAA 57.443 38.095 12.41 10.10 36.33 2.52
142 144 3.554752 GCTAGGTGGCATTTTTGCAAAGA 60.555 43.478 12.41 8.58 36.33 2.52
196 199 9.513906 AAGAAAAAGAAAAACAATGAAAAGGGA 57.486 25.926 0.00 0.00 0.00 4.20
249 252 1.622312 GAAACGACCAGGGGTACTTCT 59.378 52.381 0.00 0.00 35.25 2.85
298 301 2.865670 GCAAAATCCGATGCCAACACAA 60.866 45.455 0.00 0.00 36.56 3.33
402 405 1.211457 CAGGCATGAGAAAGCTAGGGT 59.789 52.381 0.00 0.00 0.00 4.34
720 1936 1.229975 CCATCAAGCTCGTGTGCACA 61.230 55.000 17.42 17.42 34.99 4.57
776 1992 2.809696 CACTTTCAATACCGGGTTTCGT 59.190 45.455 4.31 0.00 37.11 3.85
781 1997 0.402504 TGCCACTTTCAATACCGGGT 59.597 50.000 6.32 4.46 0.00 5.28
832 2048 0.951558 CTGTTTGGGGTCGAAGTTGG 59.048 55.000 0.00 0.00 0.00 3.77
836 2052 2.185004 ACATCTGTTTGGGGTCGAAG 57.815 50.000 0.00 0.00 0.00 3.79
840 2057 2.558359 CCTTCAACATCTGTTTGGGGTC 59.442 50.000 0.00 0.00 35.83 4.46
1433 2669 1.090052 GGTGACGTGGAAGCATAGGC 61.090 60.000 0.00 0.00 41.61 3.93
1687 2940 2.203266 GGCCAGGATGTAGCTGCC 60.203 66.667 0.00 0.00 0.00 4.85
1696 2949 2.196997 TTAGCTTGTGCGGCCAGGAT 62.197 55.000 2.24 0.00 45.42 3.24
1701 2954 2.774799 CCCATTAGCTTGTGCGGCC 61.775 63.158 0.00 0.00 45.42 6.13
1736 2995 3.640967 GTCATAGAGGCAGAGGTGAGAAT 59.359 47.826 0.00 0.00 0.00 2.40
2886 4385 6.933514 TCAGTATTGGGCTGTATATGATGA 57.066 37.500 0.00 0.00 35.60 2.92
2887 4386 7.164122 ACTTCAGTATTGGGCTGTATATGATG 58.836 38.462 0.00 0.00 35.60 3.07
2888 4387 7.321717 ACTTCAGTATTGGGCTGTATATGAT 57.678 36.000 0.00 0.00 35.60 2.45
2890 4389 8.902540 TTAACTTCAGTATTGGGCTGTATATG 57.097 34.615 0.00 0.00 35.60 1.78
2899 6637 6.318648 TGCTAGCATTTAACTTCAGTATTGGG 59.681 38.462 14.93 0.00 0.00 4.12
3074 6821 7.233632 ACCATGCAACCAATATGTGTAGATAT 58.766 34.615 0.00 0.00 0.00 1.63
3086 6833 2.627699 ACTCGAAAACCATGCAACCAAT 59.372 40.909 0.00 0.00 0.00 3.16
3087 6834 2.028130 ACTCGAAAACCATGCAACCAA 58.972 42.857 0.00 0.00 0.00 3.67
3088 6835 1.606668 GACTCGAAAACCATGCAACCA 59.393 47.619 0.00 0.00 0.00 3.67
3089 6836 1.399727 CGACTCGAAAACCATGCAACC 60.400 52.381 0.00 0.00 0.00 3.77
3090 6837 1.950472 CGACTCGAAAACCATGCAAC 58.050 50.000 0.00 0.00 0.00 4.17
3091 6838 0.237235 GCGACTCGAAAACCATGCAA 59.763 50.000 1.63 0.00 0.00 4.08
3092 6839 1.866237 GCGACTCGAAAACCATGCA 59.134 52.632 1.63 0.00 0.00 3.96
3093 6840 1.225745 CGCGACTCGAAAACCATGC 60.226 57.895 0.00 0.00 41.67 4.06
3094 6841 2.441023 TCGCGACTCGAAAACCATG 58.559 52.632 3.71 0.00 45.36 3.66
3095 6842 4.979204 TCGCGACTCGAAAACCAT 57.021 50.000 3.71 0.00 45.36 3.55
3105 6852 3.501548 GGCTCGAGAGTCGCGACT 61.502 66.667 39.89 39.89 45.84 4.18
3106 6853 3.501548 AGGCTCGAGAGTCGCGAC 61.502 66.667 31.30 31.30 40.21 5.19
3107 6854 3.500642 CAGGCTCGAGAGTCGCGA 61.501 66.667 18.75 18.09 40.21 5.87
3110 6857 3.329688 AACGCAGGCTCGAGAGTCG 62.330 63.158 18.75 14.99 42.10 4.18
3111 6858 1.515304 GAACGCAGGCTCGAGAGTC 60.515 63.158 18.75 4.61 0.00 3.36
3112 6859 1.974343 AGAACGCAGGCTCGAGAGT 60.974 57.895 18.75 4.38 0.00 3.24
3113 6860 1.515952 CAGAACGCAGGCTCGAGAG 60.516 63.158 18.75 6.09 0.00 3.20
3114 6861 1.971695 TCAGAACGCAGGCTCGAGA 60.972 57.895 18.75 0.00 0.00 4.04
3115 6862 1.803519 GTCAGAACGCAGGCTCGAG 60.804 63.158 8.45 8.45 0.00 4.04
3116 6863 0.958876 TAGTCAGAACGCAGGCTCGA 60.959 55.000 12.16 0.00 0.00 4.04
3117 6864 0.524392 CTAGTCAGAACGCAGGCTCG 60.524 60.000 5.08 5.08 0.00 5.03
3118 6865 0.528470 ACTAGTCAGAACGCAGGCTC 59.472 55.000 0.00 0.00 0.00 4.70
3119 6866 0.528470 GACTAGTCAGAACGCAGGCT 59.472 55.000 18.20 0.00 0.00 4.58
3120 6867 0.798771 CGACTAGTCAGAACGCAGGC 60.799 60.000 22.37 0.00 0.00 4.85
3121 6868 0.798771 GCGACTAGTCAGAACGCAGG 60.799 60.000 22.37 4.17 44.00 4.85
3122 6869 1.128724 CGCGACTAGTCAGAACGCAG 61.129 60.000 22.37 12.00 44.40 5.18
3123 6870 1.154282 CGCGACTAGTCAGAACGCA 60.154 57.895 22.37 0.00 44.40 5.24
3124 6871 1.126996 GTCGCGACTAGTCAGAACGC 61.127 60.000 31.12 17.95 42.57 4.84
3125 6872 0.443088 AGTCGCGACTAGTCAGAACG 59.557 55.000 38.67 18.08 40.43 3.95
3126 6873 1.463831 TGAGTCGCGACTAGTCAGAAC 59.536 52.381 39.33 24.54 42.66 3.01
3127 6874 1.732809 CTGAGTCGCGACTAGTCAGAA 59.267 52.381 35.36 19.47 42.66 3.02
3128 6875 1.337917 ACTGAGTCGCGACTAGTCAGA 60.338 52.381 40.49 23.26 42.66 3.27
3129 6876 1.061421 GACTGAGTCGCGACTAGTCAG 59.939 57.143 38.70 37.51 42.66 3.51
3130 6877 1.077123 GACTGAGTCGCGACTAGTCA 58.923 55.000 38.70 32.52 42.66 3.41
3131 6878 3.881783 GACTGAGTCGCGACTAGTC 57.118 57.895 35.43 35.43 42.66 2.59
3149 6896 0.858135 GAGCTTAGTGTCGACTCGCG 60.858 60.000 17.92 0.00 42.69 5.87
3150 6897 0.168348 TGAGCTTAGTGTCGACTCGC 59.832 55.000 17.92 11.93 33.21 5.03
3151 6898 1.465387 ACTGAGCTTAGTGTCGACTCG 59.535 52.381 17.92 1.95 33.21 4.18
3152 6899 3.125698 GACTGAGCTTAGTGTCGACTC 57.874 52.381 16.95 13.63 33.21 3.36
3157 6904 1.540267 TGGTCGACTGAGCTTAGTGTC 59.460 52.381 16.95 7.48 43.09 3.67
3158 6905 1.617322 TGGTCGACTGAGCTTAGTGT 58.383 50.000 16.95 0.00 43.09 3.55
3159 6906 2.949451 ATGGTCGACTGAGCTTAGTG 57.051 50.000 16.95 8.61 43.09 2.74
3160 6907 5.599999 AAATATGGTCGACTGAGCTTAGT 57.400 39.130 16.46 11.51 43.09 2.24
3161 6908 6.709643 CAAAAATATGGTCGACTGAGCTTAG 58.290 40.000 16.46 3.53 43.09 2.18
3162 6909 5.064707 GCAAAAATATGGTCGACTGAGCTTA 59.935 40.000 16.46 1.81 43.09 3.09
3163 6910 4.142600 GCAAAAATATGGTCGACTGAGCTT 60.143 41.667 16.46 1.36 43.09 3.74
3164 6911 3.375299 GCAAAAATATGGTCGACTGAGCT 59.625 43.478 16.46 0.00 43.09 4.09
3165 6912 3.685058 GCAAAAATATGGTCGACTGAGC 58.315 45.455 16.46 0.00 42.98 4.26
3166 6913 3.616821 TCGCAAAAATATGGTCGACTGAG 59.383 43.478 16.46 5.09 0.00 3.35
3167 6914 3.369756 GTCGCAAAAATATGGTCGACTGA 59.630 43.478 16.46 2.65 41.84 3.41
3168 6915 3.670203 GTCGCAAAAATATGGTCGACTG 58.330 45.455 16.46 4.11 41.84 3.51
3170 6917 3.369756 TGAGTCGCAAAAATATGGTCGAC 59.630 43.478 7.13 7.13 44.36 4.20
3171 6918 3.591023 TGAGTCGCAAAAATATGGTCGA 58.409 40.909 0.00 0.00 0.00 4.20
3172 6919 4.536364 ATGAGTCGCAAAAATATGGTCG 57.464 40.909 0.00 0.00 0.00 4.79
3173 6920 6.480320 AGTCTATGAGTCGCAAAAATATGGTC 59.520 38.462 0.00 0.00 0.00 4.02
3174 6921 6.349300 AGTCTATGAGTCGCAAAAATATGGT 58.651 36.000 0.00 0.00 0.00 3.55
3175 6922 6.851222 AGTCTATGAGTCGCAAAAATATGG 57.149 37.500 0.00 0.00 0.00 2.74
3176 6923 8.581057 ACTAGTCTATGAGTCGCAAAAATATG 57.419 34.615 0.00 0.00 0.00 1.78
3177 6924 8.804688 GACTAGTCTATGAGTCGCAAAAATAT 57.195 34.615 15.91 0.00 33.27 1.28
3221 6968 1.710013 TGGATTTTGAGTCGCTCGAC 58.290 50.000 13.92 13.92 44.86 4.20
3222 6969 2.094234 TCATGGATTTTGAGTCGCTCGA 60.094 45.455 0.00 0.00 32.35 4.04
3223 6970 2.270923 TCATGGATTTTGAGTCGCTCG 58.729 47.619 0.00 0.00 32.35 5.03
3224 6971 4.595116 CAATCATGGATTTTGAGTCGCTC 58.405 43.478 0.00 0.58 28.87 5.03
3225 6972 4.627611 CAATCATGGATTTTGAGTCGCT 57.372 40.909 0.00 0.00 28.87 4.93
3236 6983 9.866655 AGTATGTTATTACAACCAATCATGGAT 57.133 29.630 1.10 0.00 42.94 3.41
3237 6984 9.693739 AAGTATGTTATTACAACCAATCATGGA 57.306 29.630 1.10 0.00 42.94 3.41
3238 6985 9.950680 GAAGTATGTTATTACAACCAATCATGG 57.049 33.333 0.00 0.00 43.63 3.66
3239 6986 9.950680 GGAAGTATGTTATTACAACCAATCATG 57.049 33.333 0.00 0.00 37.91 3.07
3240 6987 9.920946 AGGAAGTATGTTATTACAACCAATCAT 57.079 29.630 0.00 0.00 37.91 2.45
3241 6988 9.747898 AAGGAAGTATGTTATTACAACCAATCA 57.252 29.630 0.00 0.00 37.91 2.57
3272 7019 5.856455 ACTGCAAAAACGTCTTATATTGTGC 59.144 36.000 4.02 4.02 0.00 4.57
3416 7165 0.181824 ACCCAACTTTGTAGCACGGT 59.818 50.000 0.00 0.00 0.00 4.83
4315 8123 3.080300 ACAACAAACTTGTGGAGGACA 57.920 42.857 3.95 0.00 41.31 4.02
4316 8124 4.201980 GGTAACAACAAACTTGTGGAGGAC 60.202 45.833 3.95 0.00 41.31 3.85
4317 8125 3.949113 GGTAACAACAAACTTGTGGAGGA 59.051 43.478 3.95 0.00 41.31 3.71
4318 8126 3.242936 CGGTAACAACAAACTTGTGGAGG 60.243 47.826 3.95 0.00 41.31 4.30
4337 8145 2.554032 CCAGAAAATTCAAGCAGACGGT 59.446 45.455 0.00 0.00 0.00 4.83
4358 8166 7.826918 ACTATCCAGATACCTTAGACTTGTC 57.173 40.000 0.00 0.00 0.00 3.18
4429 8281 2.101783 CAGATTTGCATAAGGTGGCCA 58.898 47.619 0.00 0.00 0.00 5.36
4441 8293 9.363348 AGAAACGTTCTCTAACTGCAGATTTGC 62.363 40.741 23.35 0.24 42.93 3.68
4442 8294 5.597813 AACGTTCTCTAACTGCAGATTTG 57.402 39.130 23.35 11.78 33.15 2.32
4443 8295 5.992217 AGAAACGTTCTCTAACTGCAGATTT 59.008 36.000 23.35 7.86 34.07 2.17
4444 8296 5.406780 CAGAAACGTTCTCTAACTGCAGATT 59.593 40.000 23.35 13.35 38.11 2.40
4445 8297 4.926238 CAGAAACGTTCTCTAACTGCAGAT 59.074 41.667 23.35 12.06 38.11 2.90
4446 8298 4.037565 TCAGAAACGTTCTCTAACTGCAGA 59.962 41.667 23.35 0.00 38.11 4.26
4447 8299 4.299155 TCAGAAACGTTCTCTAACTGCAG 58.701 43.478 13.48 13.48 38.11 4.41
4448 8300 4.316205 TCAGAAACGTTCTCTAACTGCA 57.684 40.909 0.00 0.00 38.11 4.41
4449 8301 4.923871 TCATCAGAAACGTTCTCTAACTGC 59.076 41.667 0.00 0.00 38.11 4.40
4450 8302 5.346281 GGTCATCAGAAACGTTCTCTAACTG 59.654 44.000 0.00 5.40 38.11 3.16
4451 8303 5.010719 TGGTCATCAGAAACGTTCTCTAACT 59.989 40.000 0.00 0.00 38.11 2.24
4452 8304 5.227908 TGGTCATCAGAAACGTTCTCTAAC 58.772 41.667 0.00 4.28 38.11 2.34
4453 8305 5.462530 TGGTCATCAGAAACGTTCTCTAA 57.537 39.130 0.00 0.00 38.11 2.10
4454 8306 5.462530 TTGGTCATCAGAAACGTTCTCTA 57.537 39.130 0.00 0.00 38.11 2.43
4455 8307 4.336889 TTGGTCATCAGAAACGTTCTCT 57.663 40.909 0.00 4.21 38.11 3.10
4456 8308 4.750098 TCTTTGGTCATCAGAAACGTTCTC 59.250 41.667 0.00 1.69 38.11 2.87
4457 8309 4.703897 TCTTTGGTCATCAGAAACGTTCT 58.296 39.130 0.00 0.00 41.70 3.01
4458 8310 5.418310 TTCTTTGGTCATCAGAAACGTTC 57.582 39.130 0.00 0.00 0.00 3.95
4459 8311 5.588648 TCTTTCTTTGGTCATCAGAAACGTT 59.411 36.000 0.00 0.00 0.00 3.99
4460 8312 5.123227 TCTTTCTTTGGTCATCAGAAACGT 58.877 37.500 0.00 0.00 0.00 3.99
4461 8313 5.673337 TCTTTCTTTGGTCATCAGAAACG 57.327 39.130 0.00 0.00 0.00 3.60
4462 8314 5.860716 GCATCTTTCTTTGGTCATCAGAAAC 59.139 40.000 0.00 0.00 0.00 2.78
4463 8315 5.535783 TGCATCTTTCTTTGGTCATCAGAAA 59.464 36.000 0.00 0.00 0.00 2.52
4464 8316 5.072055 TGCATCTTTCTTTGGTCATCAGAA 58.928 37.500 0.00 0.00 0.00 3.02
4465 8317 4.654915 TGCATCTTTCTTTGGTCATCAGA 58.345 39.130 0.00 0.00 0.00 3.27
4466 8318 5.578005 ATGCATCTTTCTTTGGTCATCAG 57.422 39.130 0.00 0.00 0.00 2.90
4467 8319 5.988310 AATGCATCTTTCTTTGGTCATCA 57.012 34.783 0.00 0.00 0.00 3.07
4468 8320 8.761575 TTTAAATGCATCTTTCTTTGGTCATC 57.238 30.769 0.00 0.00 0.00 2.92
4469 8321 9.558396 TTTTTAAATGCATCTTTCTTTGGTCAT 57.442 25.926 0.00 0.00 0.00 3.06
4470 8322 8.954950 TTTTTAAATGCATCTTTCTTTGGTCA 57.045 26.923 0.00 0.00 0.00 4.02
4473 8325 9.977762 GCTATTTTTAAATGCATCTTTCTTTGG 57.022 29.630 0.00 0.00 0.00 3.28
4486 8338 7.546667 ACTGGTCTGCATTGCTATTTTTAAATG 59.453 33.333 10.49 0.00 33.98 2.32
4487 8339 7.614494 ACTGGTCTGCATTGCTATTTTTAAAT 58.386 30.769 10.49 0.00 0.00 1.40
4488 8340 6.991938 ACTGGTCTGCATTGCTATTTTTAAA 58.008 32.000 10.49 0.00 0.00 1.52
4489 8341 6.588719 ACTGGTCTGCATTGCTATTTTTAA 57.411 33.333 10.49 0.00 0.00 1.52
4490 8342 6.389091 CAACTGGTCTGCATTGCTATTTTTA 58.611 36.000 10.49 0.00 0.00 1.52
4491 8343 5.232463 CAACTGGTCTGCATTGCTATTTTT 58.768 37.500 10.49 0.00 0.00 1.94
4492 8344 4.813027 CAACTGGTCTGCATTGCTATTTT 58.187 39.130 10.49 0.00 0.00 1.82
4493 8345 3.367703 GCAACTGGTCTGCATTGCTATTT 60.368 43.478 12.11 0.00 43.26 1.40
4494 8346 2.165030 GCAACTGGTCTGCATTGCTATT 59.835 45.455 12.11 0.00 43.26 1.73
4495 8347 1.747355 GCAACTGGTCTGCATTGCTAT 59.253 47.619 12.11 0.00 43.26 2.97
4496 8348 1.167851 GCAACTGGTCTGCATTGCTA 58.832 50.000 12.11 0.00 43.26 3.49
4497 8349 1.530013 GGCAACTGGTCTGCATTGCT 61.530 55.000 17.31 0.00 45.37 3.91
4498 8350 1.080298 GGCAACTGGTCTGCATTGC 60.080 57.895 11.16 11.16 45.34 3.56
4499 8351 0.892755 ATGGCAACTGGTCTGCATTG 59.107 50.000 0.00 0.00 41.78 2.82
4500 8352 2.512692 TATGGCAACTGGTCTGCATT 57.487 45.000 0.00 0.00 41.78 3.56
4501 8353 2.512692 TTATGGCAACTGGTCTGCAT 57.487 45.000 0.00 0.00 41.78 3.96
4502 8354 2.284754 TTTATGGCAACTGGTCTGCA 57.715 45.000 0.00 0.00 41.78 4.41
4503 8355 3.658757 TTTTTATGGCAACTGGTCTGC 57.341 42.857 0.00 0.00 39.16 4.26
4504 8356 5.047802 AGACATTTTTATGGCAACTGGTCTG 60.048 40.000 0.00 0.00 31.32 3.51
4505 8357 5.079643 AGACATTTTTATGGCAACTGGTCT 58.920 37.500 0.00 0.00 37.61 3.85
4506 8358 5.391312 AGACATTTTTATGGCAACTGGTC 57.609 39.130 0.00 0.00 37.61 4.02
4507 8359 5.806654 AAGACATTTTTATGGCAACTGGT 57.193 34.783 0.00 0.00 37.61 4.00
4508 8360 5.106987 GCAAAGACATTTTTATGGCAACTGG 60.107 40.000 0.00 0.00 37.61 4.00
4509 8361 5.466058 TGCAAAGACATTTTTATGGCAACTG 59.534 36.000 0.00 0.00 37.61 3.16
4510 8362 5.609423 TGCAAAGACATTTTTATGGCAACT 58.391 33.333 0.00 0.00 37.61 3.16
4511 8363 5.921004 TGCAAAGACATTTTTATGGCAAC 57.079 34.783 0.00 0.00 30.13 4.17
4512 8364 6.054295 AGTTGCAAAGACATTTTTATGGCAA 58.946 32.000 0.00 0.00 32.84 4.52
4513 8365 5.609423 AGTTGCAAAGACATTTTTATGGCA 58.391 33.333 0.00 0.00 30.13 4.92
4514 8366 5.928264 AGAGTTGCAAAGACATTTTTATGGC 59.072 36.000 0.00 0.00 0.00 4.40
4515 8367 7.373493 AGAGAGTTGCAAAGACATTTTTATGG 58.627 34.615 0.00 0.00 0.00 2.74
4516 8368 8.697067 CAAGAGAGTTGCAAAGACATTTTTATG 58.303 33.333 0.00 0.00 0.00 1.90
4517 8369 8.632679 TCAAGAGAGTTGCAAAGACATTTTTAT 58.367 29.630 0.00 0.00 0.00 1.40
4518 8370 7.995289 TCAAGAGAGTTGCAAAGACATTTTTA 58.005 30.769 0.00 0.00 0.00 1.52
4519 8371 6.866480 TCAAGAGAGTTGCAAAGACATTTTT 58.134 32.000 0.00 0.00 0.00 1.94
4520 8372 6.455360 TCAAGAGAGTTGCAAAGACATTTT 57.545 33.333 0.00 0.00 0.00 1.82
4521 8373 6.645790 ATCAAGAGAGTTGCAAAGACATTT 57.354 33.333 0.00 0.00 0.00 2.32
4522 8374 7.392673 ACATATCAAGAGAGTTGCAAAGACATT 59.607 33.333 0.00 0.00 0.00 2.71
4523 8375 6.883217 ACATATCAAGAGAGTTGCAAAGACAT 59.117 34.615 0.00 0.00 0.00 3.06
4524 8376 6.148315 CACATATCAAGAGAGTTGCAAAGACA 59.852 38.462 0.00 0.00 0.00 3.41
4525 8377 6.402983 CCACATATCAAGAGAGTTGCAAAGAC 60.403 42.308 0.00 0.00 0.00 3.01
4526 8378 5.645067 CCACATATCAAGAGAGTTGCAAAGA 59.355 40.000 0.00 0.00 0.00 2.52
4527 8379 5.675575 GCCACATATCAAGAGAGTTGCAAAG 60.676 44.000 0.00 0.00 0.00 2.77
4528 8380 4.156556 GCCACATATCAAGAGAGTTGCAAA 59.843 41.667 0.00 0.00 0.00 3.68
4529 8381 3.691118 GCCACATATCAAGAGAGTTGCAA 59.309 43.478 0.00 0.00 0.00 4.08
4530 8382 3.273434 GCCACATATCAAGAGAGTTGCA 58.727 45.455 0.00 0.00 0.00 4.08
4531 8383 3.273434 TGCCACATATCAAGAGAGTTGC 58.727 45.455 0.00 0.00 0.00 4.17
4532 8384 4.763073 TCTGCCACATATCAAGAGAGTTG 58.237 43.478 0.00 0.00 0.00 3.16
4533 8385 5.188555 TCTTCTGCCACATATCAAGAGAGTT 59.811 40.000 0.00 0.00 0.00 3.01
4534 8386 4.713814 TCTTCTGCCACATATCAAGAGAGT 59.286 41.667 0.00 0.00 0.00 3.24
4535 8387 5.273674 TCTTCTGCCACATATCAAGAGAG 57.726 43.478 0.00 0.00 0.00 3.20
4536 8388 5.423290 TCTTCTTCTGCCACATATCAAGAGA 59.577 40.000 0.00 0.00 0.00 3.10
4537 8389 5.668471 TCTTCTTCTGCCACATATCAAGAG 58.332 41.667 0.00 0.00 0.00 2.85
4538 8390 5.188555 ACTCTTCTTCTGCCACATATCAAGA 59.811 40.000 0.00 0.00 0.00 3.02
4539 8391 5.426504 ACTCTTCTTCTGCCACATATCAAG 58.573 41.667 0.00 0.00 0.00 3.02
4540 8392 5.426689 ACTCTTCTTCTGCCACATATCAA 57.573 39.130 0.00 0.00 0.00 2.57
4541 8393 6.544928 TTACTCTTCTTCTGCCACATATCA 57.455 37.500 0.00 0.00 0.00 2.15
4542 8394 7.849804 TTTTACTCTTCTTCTGCCACATATC 57.150 36.000 0.00 0.00 0.00 1.63
4543 8395 8.814038 AATTTTACTCTTCTTCTGCCACATAT 57.186 30.769 0.00 0.00 0.00 1.78
4544 8396 9.383519 CTAATTTTACTCTTCTTCTGCCACATA 57.616 33.333 0.00 0.00 0.00 2.29
4545 8397 7.885399 ACTAATTTTACTCTTCTTCTGCCACAT 59.115 33.333 0.00 0.00 0.00 3.21
4546 8398 7.224297 ACTAATTTTACTCTTCTTCTGCCACA 58.776 34.615 0.00 0.00 0.00 4.17
4547 8399 7.674471 ACTAATTTTACTCTTCTTCTGCCAC 57.326 36.000 0.00 0.00 0.00 5.01
4548 8400 8.691661 AAACTAATTTTACTCTTCTTCTGCCA 57.308 30.769 0.00 0.00 0.00 4.92
4569 8421 7.860872 GCATGTAACTTTGCTACTTGTAAAACT 59.139 33.333 0.00 0.00 35.95 2.66
4570 8422 7.114388 GGCATGTAACTTTGCTACTTGTAAAAC 59.886 37.037 0.00 0.00 38.88 2.43
4571 8423 7.142680 GGCATGTAACTTTGCTACTTGTAAAA 58.857 34.615 0.00 0.00 38.88 1.52
4572 8424 6.263392 TGGCATGTAACTTTGCTACTTGTAAA 59.737 34.615 0.00 0.00 38.88 2.01
4573 8425 5.765677 TGGCATGTAACTTTGCTACTTGTAA 59.234 36.000 0.00 0.00 38.88 2.41
4574 8426 5.309638 TGGCATGTAACTTTGCTACTTGTA 58.690 37.500 0.00 0.00 38.88 2.41
4575 8427 4.141287 TGGCATGTAACTTTGCTACTTGT 58.859 39.130 0.00 0.00 38.88 3.16
4576 8428 4.455533 TCTGGCATGTAACTTTGCTACTTG 59.544 41.667 0.00 0.00 38.88 3.16
4577 8429 4.651778 TCTGGCATGTAACTTTGCTACTT 58.348 39.130 0.00 0.00 38.88 2.24
4578 8430 4.286297 TCTGGCATGTAACTTTGCTACT 57.714 40.909 0.00 0.00 38.88 2.57
4579 8431 4.455877 AGTTCTGGCATGTAACTTTGCTAC 59.544 41.667 0.00 0.00 38.88 3.58
4580 8432 4.651778 AGTTCTGGCATGTAACTTTGCTA 58.348 39.130 0.00 0.00 38.88 3.49
4581 8433 3.490348 AGTTCTGGCATGTAACTTTGCT 58.510 40.909 0.00 0.00 38.88 3.91
4582 8434 3.923017 AGTTCTGGCATGTAACTTTGC 57.077 42.857 0.00 0.00 38.14 3.68
4585 8437 9.057089 GCTATAATTAGTTCTGGCATGTAACTT 57.943 33.333 13.15 2.05 35.23 2.66
4586 8438 8.210946 TGCTATAATTAGTTCTGGCATGTAACT 58.789 33.333 12.69 12.69 37.27 2.24
4587 8439 8.378172 TGCTATAATTAGTTCTGGCATGTAAC 57.622 34.615 0.00 0.00 0.00 2.50
4588 8440 8.428852 TCTGCTATAATTAGTTCTGGCATGTAA 58.571 33.333 0.00 0.00 0.00 2.41
4589 8441 7.872993 GTCTGCTATAATTAGTTCTGGCATGTA 59.127 37.037 0.00 0.00 0.00 2.29
4590 8442 6.708054 GTCTGCTATAATTAGTTCTGGCATGT 59.292 38.462 0.00 0.00 0.00 3.21
4591 8443 6.707608 TGTCTGCTATAATTAGTTCTGGCATG 59.292 38.462 0.00 0.00 0.00 4.06
4592 8444 6.830912 TGTCTGCTATAATTAGTTCTGGCAT 58.169 36.000 0.00 0.00 0.00 4.40
4593 8445 6.233905 TGTCTGCTATAATTAGTTCTGGCA 57.766 37.500 0.00 0.00 0.00 4.92
4594 8446 7.442364 TCATTGTCTGCTATAATTAGTTCTGGC 59.558 37.037 0.00 0.00 0.00 4.85
4595 8447 8.768955 GTCATTGTCTGCTATAATTAGTTCTGG 58.231 37.037 0.00 0.00 0.00 3.86
4596 8448 8.483218 CGTCATTGTCTGCTATAATTAGTTCTG 58.517 37.037 0.00 0.00 0.00 3.02
4597 8449 8.414003 TCGTCATTGTCTGCTATAATTAGTTCT 58.586 33.333 0.00 0.00 0.00 3.01
4598 8450 8.575565 TCGTCATTGTCTGCTATAATTAGTTC 57.424 34.615 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.