Multiple sequence alignment - TraesCS2B01G207000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G207000 chr2B 100.000 4429 0 0 977 5405 185809493 185805065 0.000000e+00 8179
1 TraesCS2B01G207000 chr2B 100.000 477 0 0 1 477 185810469 185809993 0.000000e+00 881
2 TraesCS2B01G207000 chr2D 95.789 3325 107 18 1462 4769 131468803 131465495 0.000000e+00 5334
3 TraesCS2B01G207000 chr2D 98.174 493 6 2 977 1466 131469408 131468916 0.000000e+00 857
4 TraesCS2B01G207000 chr2D 85.473 296 21 8 5011 5305 131464212 131463938 6.850000e-74 289
5 TraesCS2B01G207000 chr2D 94.194 155 4 4 323 474 131469837 131469685 1.170000e-56 231
6 TraesCS2B01G207000 chr2D 96.429 84 3 0 4772 4855 131464299 131464216 7.300000e-29 139
7 TraesCS2B01G207000 chr2A 94.701 2189 59 17 1462 3636 138186555 138184410 0.000000e+00 3347
8 TraesCS2B01G207000 chr2A 94.790 1286 55 10 3635 4910 138184306 138183023 0.000000e+00 1993
9 TraesCS2B01G207000 chr2A 96.033 479 13 2 991 1466 138187146 138186671 0.000000e+00 774
10 TraesCS2B01G207000 chr2A 86.441 413 29 11 4907 5316 138182995 138182607 1.390000e-115 427
11 TraesCS2B01G207000 chr2A 97.143 140 1 2 330 467 138187626 138187488 3.260000e-57 233
12 TraesCS2B01G207000 chr2A 97.143 105 3 0 5301 5405 138170894 138170790 1.550000e-40 178
13 TraesCS2B01G207000 chr7A 94.898 98 5 0 2500 2597 642744446 642744349 2.610000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G207000 chr2B 185805065 185810469 5404 True 4530.0 8179 100.0000 1 5405 2 chr2B.!!$R1 5404
1 TraesCS2B01G207000 chr2D 131463938 131469837 5899 True 1370.0 5334 94.0118 323 5305 5 chr2D.!!$R1 4982
2 TraesCS2B01G207000 chr2A 138182607 138187626 5019 True 1354.8 3347 93.8216 330 5316 5 chr2A.!!$R2 4986

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
251 252 0.110192 GGCTTCAGCGCAAGTACAAC 60.110 55.000 11.47 0.00 43.26 3.32 F
317 318 0.527817 CGTCCAGTCATTCCGCCTAC 60.528 60.000 0.00 0.00 0.00 3.18 F
1559 1694 2.476320 GCGCTCAAGCCCATTCTCC 61.476 63.158 0.00 0.00 37.91 3.71 F
2051 2188 1.134936 TGCTTAAATCAGGCTACGCGA 60.135 47.619 15.93 0.00 0.00 5.87 F
3143 3288 0.171903 ATGACTTGGCTTGCATTCGC 59.828 50.000 0.00 0.00 39.24 4.70 F
3993 4246 0.536006 AGAAACTGCAGTCCCTGTGC 60.536 55.000 21.95 1.98 41.59 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1542 1671 0.393537 AAGGAGAATGGGCTTGAGCG 60.394 55.0 0.00 0.0 43.26 5.03 R
1600 1736 0.457166 CTCAAACGTGCCATGCCATG 60.457 55.0 0.00 0.0 0.00 3.66 R
2369 2512 0.615544 CACCAGGCCCATTGTGGAAT 60.616 55.0 14.61 0.0 40.96 3.01 R
3993 4246 0.378962 TCCGCAAGTTCAACCGTTTG 59.621 50.0 0.00 0.0 0.00 2.93 R
4116 4369 0.320421 GCGGCTGAGGTACTGACAAA 60.320 55.0 0.00 0.0 41.55 2.83 R
5375 6860 0.536006 GCTGGGAGCTTGTGAAGTGT 60.536 55.0 0.00 0.0 38.45 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 6.920569 ACACAACTAGTCAATCGTTTTTCT 57.079 33.333 0.00 0.00 0.00 2.52
53 54 7.316544 ACACAACTAGTCAATCGTTTTTCTT 57.683 32.000 0.00 0.00 0.00 2.52
54 55 8.428186 ACACAACTAGTCAATCGTTTTTCTTA 57.572 30.769 0.00 0.00 0.00 2.10
55 56 8.333186 ACACAACTAGTCAATCGTTTTTCTTAC 58.667 33.333 0.00 0.00 0.00 2.34
56 57 8.332464 CACAACTAGTCAATCGTTTTTCTTACA 58.668 33.333 0.00 0.00 0.00 2.41
57 58 9.052759 ACAACTAGTCAATCGTTTTTCTTACAT 57.947 29.630 0.00 0.00 0.00 2.29
63 64 9.226606 AGTCAATCGTTTTTCTTACATAATCCA 57.773 29.630 0.00 0.00 0.00 3.41
81 82 9.793252 CATAATCCATCTTAACTGAAAACAAGG 57.207 33.333 0.00 0.00 0.00 3.61
82 83 9.753674 ATAATCCATCTTAACTGAAAACAAGGA 57.246 29.630 0.00 0.00 0.00 3.36
83 84 6.877611 TCCATCTTAACTGAAAACAAGGAC 57.122 37.500 0.00 0.00 0.00 3.85
84 85 6.361433 TCCATCTTAACTGAAAACAAGGACA 58.639 36.000 0.00 0.00 0.00 4.02
85 86 6.262273 TCCATCTTAACTGAAAACAAGGACAC 59.738 38.462 0.00 0.00 0.00 3.67
86 87 5.728351 TCTTAACTGAAAACAAGGACACG 57.272 39.130 0.00 0.00 0.00 4.49
87 88 2.844122 AACTGAAAACAAGGACACGC 57.156 45.000 0.00 0.00 0.00 5.34
88 89 1.745232 ACTGAAAACAAGGACACGCA 58.255 45.000 0.00 0.00 0.00 5.24
89 90 2.297701 ACTGAAAACAAGGACACGCAT 58.702 42.857 0.00 0.00 0.00 4.73
90 91 2.033299 ACTGAAAACAAGGACACGCATG 59.967 45.455 0.00 0.00 0.00 4.06
91 92 1.268999 TGAAAACAAGGACACGCATGC 60.269 47.619 7.91 7.91 0.00 4.06
92 93 1.001378 GAAAACAAGGACACGCATGCT 60.001 47.619 17.13 0.00 0.00 3.79
93 94 1.890876 AAACAAGGACACGCATGCTA 58.109 45.000 17.13 0.00 0.00 3.49
94 95 1.156736 AACAAGGACACGCATGCTAC 58.843 50.000 17.13 0.00 0.00 3.58
95 96 0.321671 ACAAGGACACGCATGCTACT 59.678 50.000 17.13 0.00 0.00 2.57
96 97 1.270839 ACAAGGACACGCATGCTACTT 60.271 47.619 17.13 6.60 0.00 2.24
97 98 1.394917 CAAGGACACGCATGCTACTTC 59.605 52.381 17.13 6.52 0.00 3.01
98 99 0.898320 AGGACACGCATGCTACTTCT 59.102 50.000 17.13 5.07 0.00 2.85
99 100 1.134965 AGGACACGCATGCTACTTCTC 60.135 52.381 17.13 1.45 0.00 2.87
100 101 1.134965 GGACACGCATGCTACTTCTCT 60.135 52.381 17.13 0.00 0.00 3.10
101 102 1.923204 GACACGCATGCTACTTCTCTG 59.077 52.381 17.13 0.00 0.00 3.35
102 103 1.273606 ACACGCATGCTACTTCTCTGT 59.726 47.619 17.13 0.00 0.00 3.41
103 104 2.492088 ACACGCATGCTACTTCTCTGTA 59.508 45.455 17.13 0.00 0.00 2.74
104 105 3.131223 ACACGCATGCTACTTCTCTGTAT 59.869 43.478 17.13 0.00 0.00 2.29
105 106 3.733224 CACGCATGCTACTTCTCTGTATC 59.267 47.826 17.13 0.00 0.00 2.24
106 107 3.381590 ACGCATGCTACTTCTCTGTATCA 59.618 43.478 17.13 0.00 0.00 2.15
107 108 4.142160 ACGCATGCTACTTCTCTGTATCAA 60.142 41.667 17.13 0.00 0.00 2.57
108 109 4.805719 CGCATGCTACTTCTCTGTATCAAA 59.194 41.667 17.13 0.00 0.00 2.69
109 110 5.051173 CGCATGCTACTTCTCTGTATCAAAG 60.051 44.000 17.13 0.00 0.00 2.77
110 111 5.814705 GCATGCTACTTCTCTGTATCAAAGT 59.185 40.000 11.37 0.00 36.09 2.66
111 112 6.980978 GCATGCTACTTCTCTGTATCAAAGTA 59.019 38.462 11.37 0.00 34.09 2.24
112 113 7.655328 GCATGCTACTTCTCTGTATCAAAGTAT 59.345 37.037 11.37 0.00 34.63 2.12
113 114 8.976471 CATGCTACTTCTCTGTATCAAAGTATG 58.024 37.037 0.00 0.00 34.63 2.39
114 115 8.067751 TGCTACTTCTCTGTATCAAAGTATGT 57.932 34.615 0.00 0.00 34.63 2.29
115 116 8.191446 TGCTACTTCTCTGTATCAAAGTATGTC 58.809 37.037 0.00 0.00 34.63 3.06
116 117 8.410141 GCTACTTCTCTGTATCAAAGTATGTCT 58.590 37.037 0.00 0.00 34.63 3.41
117 118 9.944663 CTACTTCTCTGTATCAAAGTATGTCTC 57.055 37.037 0.00 0.00 34.63 3.36
118 119 8.354711 ACTTCTCTGTATCAAAGTATGTCTCA 57.645 34.615 0.00 0.00 30.47 3.27
119 120 8.465999 ACTTCTCTGTATCAAAGTATGTCTCAG 58.534 37.037 0.00 0.00 30.47 3.35
120 121 8.581253 TTCTCTGTATCAAAGTATGTCTCAGA 57.419 34.615 0.00 0.00 33.15 3.27
121 122 8.219546 TCTCTGTATCAAAGTATGTCTCAGAG 57.780 38.462 10.77 10.77 42.17 3.35
122 123 7.284261 TCTCTGTATCAAAGTATGTCTCAGAGG 59.716 40.741 15.14 1.89 41.74 3.69
123 124 6.892456 TCTGTATCAAAGTATGTCTCAGAGGT 59.108 38.462 0.00 0.00 31.79 3.85
124 125 8.053355 TCTGTATCAAAGTATGTCTCAGAGGTA 58.947 37.037 0.00 0.00 31.79 3.08
125 126 8.589701 TGTATCAAAGTATGTCTCAGAGGTAA 57.410 34.615 0.00 0.00 0.00 2.85
126 127 9.201989 TGTATCAAAGTATGTCTCAGAGGTAAT 57.798 33.333 0.00 0.00 0.00 1.89
134 135 9.523168 AGTATGTCTCAGAGGTAATAATACTCC 57.477 37.037 0.00 0.00 32.36 3.85
135 136 7.784470 ATGTCTCAGAGGTAATAATACTCCC 57.216 40.000 0.00 0.00 32.36 4.30
136 137 6.923670 TGTCTCAGAGGTAATAATACTCCCT 58.076 40.000 0.00 0.00 32.36 4.20
137 138 8.053776 TGTCTCAGAGGTAATAATACTCCCTA 57.946 38.462 0.00 0.00 32.36 3.53
138 139 8.508601 TGTCTCAGAGGTAATAATACTCCCTAA 58.491 37.037 0.00 0.00 32.36 2.69
139 140 9.364653 GTCTCAGAGGTAATAATACTCCCTAAA 57.635 37.037 0.00 0.00 32.36 1.85
140 141 9.589461 TCTCAGAGGTAATAATACTCCCTAAAG 57.411 37.037 0.00 0.00 32.36 1.85
141 142 9.589461 CTCAGAGGTAATAATACTCCCTAAAGA 57.411 37.037 0.00 0.00 32.36 2.52
142 143 9.947189 TCAGAGGTAATAATACTCCCTAAAGAA 57.053 33.333 0.00 0.00 32.36 2.52
195 196 9.988815 AGATCATATCTAAACGCTCTTGTATTT 57.011 29.630 0.00 0.00 38.00 1.40
197 198 9.988815 ATCATATCTAAACGCTCTTGTATTTCT 57.011 29.630 0.00 0.00 0.00 2.52
198 199 9.817809 TCATATCTAAACGCTCTTGTATTTCTT 57.182 29.630 0.00 0.00 0.00 2.52
201 202 8.997621 ATCTAAACGCTCTTGTATTTCTTACA 57.002 30.769 0.00 0.00 39.07 2.41
202 203 8.462143 TCTAAACGCTCTTGTATTTCTTACAG 57.538 34.615 0.00 0.00 41.72 2.74
203 204 8.301720 TCTAAACGCTCTTGTATTTCTTACAGA 58.698 33.333 0.00 0.00 41.72 3.41
204 205 6.952935 AACGCTCTTGTATTTCTTACAGAG 57.047 37.500 0.00 0.00 41.72 3.35
205 206 6.268825 ACGCTCTTGTATTTCTTACAGAGA 57.731 37.500 12.36 6.81 41.72 3.10
206 207 6.326375 ACGCTCTTGTATTTCTTACAGAGAG 58.674 40.000 14.11 14.11 41.72 3.20
207 208 6.151312 ACGCTCTTGTATTTCTTACAGAGAGA 59.849 38.462 18.49 7.05 41.91 3.10
208 209 6.690957 CGCTCTTGTATTTCTTACAGAGAGAG 59.309 42.308 18.49 13.75 41.81 3.20
209 210 7.543756 GCTCTTGTATTTCTTACAGAGAGAGT 58.456 38.462 18.49 0.00 41.38 3.24
210 211 8.679100 GCTCTTGTATTTCTTACAGAGAGAGTA 58.321 37.037 18.49 0.00 41.38 2.59
212 213 9.742144 TCTTGTATTTCTTACAGAGAGAGTAGT 57.258 33.333 0.00 0.00 41.72 2.73
215 216 9.516546 TGTATTTCTTACAGAGAGAGTAGTTCA 57.483 33.333 0.00 0.00 35.86 3.18
216 217 9.777575 GTATTTCTTACAGAGAGAGTAGTTCAC 57.222 37.037 0.00 0.00 35.37 3.18
217 218 7.818997 TTTCTTACAGAGAGAGTAGTTCACA 57.181 36.000 0.00 0.00 35.37 3.58
218 219 7.441890 TTCTTACAGAGAGAGTAGTTCACAG 57.558 40.000 0.00 0.00 35.37 3.66
219 220 6.770542 TCTTACAGAGAGAGTAGTTCACAGA 58.229 40.000 0.00 0.00 0.00 3.41
220 221 7.225011 TCTTACAGAGAGAGTAGTTCACAGAA 58.775 38.462 0.00 0.00 0.00 3.02
221 222 7.720074 TCTTACAGAGAGAGTAGTTCACAGAAA 59.280 37.037 0.00 0.00 0.00 2.52
222 223 6.909550 ACAGAGAGAGTAGTTCACAGAAAT 57.090 37.500 0.00 0.00 0.00 2.17
223 224 9.516546 TTACAGAGAGAGTAGTTCACAGAAATA 57.483 33.333 0.00 0.00 0.00 1.40
224 225 8.410673 ACAGAGAGAGTAGTTCACAGAAATAA 57.589 34.615 0.00 0.00 0.00 1.40
225 226 9.030452 ACAGAGAGAGTAGTTCACAGAAATAAT 57.970 33.333 0.00 0.00 0.00 1.28
226 227 9.868277 CAGAGAGAGTAGTTCACAGAAATAATT 57.132 33.333 0.00 0.00 0.00 1.40
234 235 9.937175 GTAGTTCACAGAAATAATTTATGAGGC 57.063 33.333 0.00 0.00 35.53 4.70
235 236 8.814038 AGTTCACAGAAATAATTTATGAGGCT 57.186 30.769 0.00 0.00 35.53 4.58
236 237 9.247861 AGTTCACAGAAATAATTTATGAGGCTT 57.752 29.630 0.00 0.00 35.53 4.35
237 238 9.508567 GTTCACAGAAATAATTTATGAGGCTTC 57.491 33.333 0.00 0.00 35.53 3.86
238 239 8.806429 TCACAGAAATAATTTATGAGGCTTCA 57.194 30.769 0.00 0.00 35.53 3.02
239 240 8.896744 TCACAGAAATAATTTATGAGGCTTCAG 58.103 33.333 4.35 0.00 36.61 3.02
240 241 7.646922 CACAGAAATAATTTATGAGGCTTCAGC 59.353 37.037 4.35 0.00 36.61 4.26
241 242 6.854892 CAGAAATAATTTATGAGGCTTCAGCG 59.145 38.462 4.35 0.00 36.59 5.18
242 243 4.756084 ATAATTTATGAGGCTTCAGCGC 57.244 40.909 4.35 0.00 43.26 5.92
243 244 2.042686 ATTTATGAGGCTTCAGCGCA 57.957 45.000 11.47 0.00 43.26 6.09
244 245 1.819928 TTTATGAGGCTTCAGCGCAA 58.180 45.000 11.47 0.00 43.26 4.85
245 246 1.372582 TTATGAGGCTTCAGCGCAAG 58.627 50.000 11.47 6.65 43.26 4.01
246 247 0.250234 TATGAGGCTTCAGCGCAAGT 59.750 50.000 11.47 0.00 43.26 3.16
247 248 0.250234 ATGAGGCTTCAGCGCAAGTA 59.750 50.000 11.47 0.00 43.26 2.24
248 249 0.670546 TGAGGCTTCAGCGCAAGTAC 60.671 55.000 11.47 3.29 43.26 2.73
249 250 0.670546 GAGGCTTCAGCGCAAGTACA 60.671 55.000 11.47 0.00 43.26 2.90
250 251 0.250295 AGGCTTCAGCGCAAGTACAA 60.250 50.000 11.47 0.00 43.26 2.41
251 252 0.110192 GGCTTCAGCGCAAGTACAAC 60.110 55.000 11.47 0.00 43.26 3.32
252 253 0.586319 GCTTCAGCGCAAGTACAACA 59.414 50.000 11.47 0.00 41.68 3.33
253 254 1.002900 GCTTCAGCGCAAGTACAACAA 60.003 47.619 11.47 0.00 41.68 2.83
254 255 2.540769 GCTTCAGCGCAAGTACAACAAA 60.541 45.455 11.47 0.00 41.68 2.83
255 256 2.748461 TCAGCGCAAGTACAACAAAC 57.252 45.000 11.47 0.00 41.68 2.93
256 257 2.285083 TCAGCGCAAGTACAACAAACT 58.715 42.857 11.47 0.00 41.68 2.66
257 258 2.680841 TCAGCGCAAGTACAACAAACTT 59.319 40.909 11.47 0.00 37.67 2.66
258 259 3.035942 CAGCGCAAGTACAACAAACTTC 58.964 45.455 11.47 0.00 34.99 3.01
259 260 2.680841 AGCGCAAGTACAACAAACTTCA 59.319 40.909 11.47 0.00 34.99 3.02
260 261 2.781646 GCGCAAGTACAACAAACTTCAC 59.218 45.455 0.30 0.00 34.99 3.18
261 262 3.026349 CGCAAGTACAACAAACTTCACG 58.974 45.455 0.00 0.00 34.99 4.35
262 263 3.242155 CGCAAGTACAACAAACTTCACGA 60.242 43.478 0.00 0.00 36.43 4.35
263 264 4.551990 CGCAAGTACAACAAACTTCACGAT 60.552 41.667 0.00 0.00 36.43 3.73
264 265 5.270853 GCAAGTACAACAAACTTCACGATT 58.729 37.500 0.00 0.00 34.99 3.34
265 266 5.741982 GCAAGTACAACAAACTTCACGATTT 59.258 36.000 0.00 0.00 34.99 2.17
266 267 6.075572 GCAAGTACAACAAACTTCACGATTTC 60.076 38.462 0.00 0.00 34.99 2.17
267 268 6.671614 AGTACAACAAACTTCACGATTTCA 57.328 33.333 0.00 0.00 0.00 2.69
268 269 7.259290 AGTACAACAAACTTCACGATTTCAT 57.741 32.000 0.00 0.00 0.00 2.57
269 270 8.373048 AGTACAACAAACTTCACGATTTCATA 57.627 30.769 0.00 0.00 0.00 2.15
270 271 8.999431 AGTACAACAAACTTCACGATTTCATAT 58.001 29.630 0.00 0.00 0.00 1.78
271 272 9.262472 GTACAACAAACTTCACGATTTCATATC 57.738 33.333 0.00 0.00 0.00 1.63
272 273 7.870826 ACAACAAACTTCACGATTTCATATCA 58.129 30.769 0.00 0.00 0.00 2.15
273 274 8.017373 ACAACAAACTTCACGATTTCATATCAG 58.983 33.333 0.00 0.00 0.00 2.90
274 275 7.076842 ACAAACTTCACGATTTCATATCAGG 57.923 36.000 0.00 0.00 0.00 3.86
275 276 6.878923 ACAAACTTCACGATTTCATATCAGGA 59.121 34.615 0.00 0.00 0.00 3.86
276 277 7.554118 ACAAACTTCACGATTTCATATCAGGAT 59.446 33.333 0.00 0.00 0.00 3.24
277 278 7.721286 AACTTCACGATTTCATATCAGGATC 57.279 36.000 0.00 0.00 0.00 3.36
278 279 6.820335 ACTTCACGATTTCATATCAGGATCA 58.180 36.000 0.00 0.00 0.00 2.92
279 280 6.703607 ACTTCACGATTTCATATCAGGATCAC 59.296 38.462 0.00 0.00 0.00 3.06
280 281 6.160576 TCACGATTTCATATCAGGATCACA 57.839 37.500 0.00 0.00 0.00 3.58
281 282 6.581712 TCACGATTTCATATCAGGATCACAA 58.418 36.000 0.00 0.00 0.00 3.33
282 283 6.703165 TCACGATTTCATATCAGGATCACAAG 59.297 38.462 0.00 0.00 0.00 3.16
283 284 6.481313 CACGATTTCATATCAGGATCACAAGT 59.519 38.462 0.00 0.00 0.00 3.16
284 285 6.481313 ACGATTTCATATCAGGATCACAAGTG 59.519 38.462 0.00 0.00 0.00 3.16
285 286 6.481313 CGATTTCATATCAGGATCACAAGTGT 59.519 38.462 0.00 0.00 0.00 3.55
286 287 7.307042 CGATTTCATATCAGGATCACAAGTGTC 60.307 40.741 0.00 0.00 0.00 3.67
287 288 5.937975 TCATATCAGGATCACAAGTGTCA 57.062 39.130 0.00 0.00 0.00 3.58
288 289 6.298441 TCATATCAGGATCACAAGTGTCAA 57.702 37.500 0.00 0.00 0.00 3.18
289 290 6.892485 TCATATCAGGATCACAAGTGTCAAT 58.108 36.000 0.00 0.00 0.00 2.57
290 291 6.764560 TCATATCAGGATCACAAGTGTCAATG 59.235 38.462 0.00 2.00 0.00 2.82
291 292 3.678289 TCAGGATCACAAGTGTCAATGG 58.322 45.455 0.00 0.00 0.00 3.16
292 293 3.072915 TCAGGATCACAAGTGTCAATGGT 59.927 43.478 0.00 0.00 0.00 3.55
293 294 3.438087 CAGGATCACAAGTGTCAATGGTC 59.562 47.826 0.00 0.00 0.00 4.02
294 295 3.328931 AGGATCACAAGTGTCAATGGTCT 59.671 43.478 0.00 0.00 0.00 3.85
295 296 3.438087 GGATCACAAGTGTCAATGGTCTG 59.562 47.826 0.00 0.00 0.00 3.51
296 297 2.849942 TCACAAGTGTCAATGGTCTGG 58.150 47.619 0.00 0.00 0.00 3.86
297 298 1.881973 CACAAGTGTCAATGGTCTGGG 59.118 52.381 0.00 0.00 0.00 4.45
298 299 0.883833 CAAGTGTCAATGGTCTGGGC 59.116 55.000 0.00 0.00 0.00 5.36
299 300 0.606401 AAGTGTCAATGGTCTGGGCG 60.606 55.000 0.00 0.00 0.00 6.13
300 301 1.302511 GTGTCAATGGTCTGGGCGT 60.303 57.895 0.00 0.00 0.00 5.68
301 302 1.003839 TGTCAATGGTCTGGGCGTC 60.004 57.895 0.00 0.00 0.00 5.19
302 303 1.745489 GTCAATGGTCTGGGCGTCC 60.745 63.158 0.00 0.00 0.00 4.79
303 304 2.220586 TCAATGGTCTGGGCGTCCA 61.221 57.895 9.26 9.26 41.58 4.02
311 312 2.668632 TGGGCGTCCAGTCATTCC 59.331 61.111 3.51 0.00 38.32 3.01
312 313 2.511600 GGGCGTCCAGTCATTCCG 60.512 66.667 0.00 0.00 0.00 4.30
313 314 3.195698 GGCGTCCAGTCATTCCGC 61.196 66.667 0.00 0.00 43.35 5.54
314 315 3.195698 GCGTCCAGTCATTCCGCC 61.196 66.667 0.00 0.00 38.52 6.13
315 316 2.579201 CGTCCAGTCATTCCGCCT 59.421 61.111 0.00 0.00 0.00 5.52
316 317 1.813859 CGTCCAGTCATTCCGCCTA 59.186 57.895 0.00 0.00 0.00 3.93
317 318 0.527817 CGTCCAGTCATTCCGCCTAC 60.528 60.000 0.00 0.00 0.00 3.18
318 319 0.527817 GTCCAGTCATTCCGCCTACG 60.528 60.000 0.00 0.00 39.67 3.51
474 480 4.779733 GCCGTCTCCCTCTCCCCA 62.780 72.222 0.00 0.00 0.00 4.96
476 482 3.141488 CGTCTCCCTCTCCCCACG 61.141 72.222 0.00 0.00 0.00 4.94
1443 1452 3.933955 TCTCTACGACTCAACTGCTCTAC 59.066 47.826 0.00 0.00 0.00 2.59
1445 1454 3.933955 TCTACGACTCAACTGCTCTACTC 59.066 47.826 0.00 0.00 0.00 2.59
1485 1614 6.176183 ACAAATCCTCTTCTGTCTGGTATTG 58.824 40.000 0.00 0.00 0.00 1.90
1542 1671 5.168526 TGCAAAGGTCATATATTCGTTGC 57.831 39.130 16.62 16.62 42.09 4.17
1559 1694 2.476320 GCGCTCAAGCCCATTCTCC 61.476 63.158 0.00 0.00 37.91 3.71
1575 1710 7.342026 GCCCATTCTCCTTTTCCTTTTTCTATA 59.658 37.037 0.00 0.00 0.00 1.31
1576 1711 9.255029 CCCATTCTCCTTTTCCTTTTTCTATAA 57.745 33.333 0.00 0.00 0.00 0.98
1600 1736 1.442769 TGCGCTGAGAACTTTGATCC 58.557 50.000 9.73 0.00 0.00 3.36
1601 1737 1.270785 TGCGCTGAGAACTTTGATCCA 60.271 47.619 9.73 0.00 0.00 3.41
1602 1738 2.012673 GCGCTGAGAACTTTGATCCAT 58.987 47.619 0.00 0.00 0.00 3.41
1603 1739 2.223203 GCGCTGAGAACTTTGATCCATG 60.223 50.000 0.00 0.00 0.00 3.66
1604 1740 2.353889 CGCTGAGAACTTTGATCCATGG 59.646 50.000 4.97 4.97 0.00 3.66
1631 1767 3.548818 GCACGTTTGAGATTTGCTTCACT 60.549 43.478 0.00 0.00 0.00 3.41
1635 1771 4.024556 CGTTTGAGATTTGCTTCACTGAGT 60.025 41.667 0.00 0.00 0.00 3.41
1636 1772 5.504665 CGTTTGAGATTTGCTTCACTGAGTT 60.505 40.000 0.00 0.00 0.00 3.01
1637 1773 5.679734 TTGAGATTTGCTTCACTGAGTTC 57.320 39.130 0.00 0.00 0.00 3.01
1638 1774 4.067896 TGAGATTTGCTTCACTGAGTTCC 58.932 43.478 0.00 0.00 0.00 3.62
1639 1775 4.202398 TGAGATTTGCTTCACTGAGTTCCT 60.202 41.667 0.00 0.00 0.00 3.36
1640 1776 4.070716 AGATTTGCTTCACTGAGTTCCTG 58.929 43.478 0.00 0.00 0.00 3.86
1647 1783 4.617298 GCTTCACTGAGTTCCTGAGACTAC 60.617 50.000 0.00 0.00 0.00 2.73
1656 1792 7.378966 TGAGTTCCTGAGACTACATTTGTAAG 58.621 38.462 0.00 0.00 0.00 2.34
1658 1794 7.155328 AGTTCCTGAGACTACATTTGTAAGTG 58.845 38.462 0.00 0.00 0.00 3.16
1670 1806 6.215845 ACATTTGTAAGTGCTTTTGTCATCC 58.784 36.000 0.00 0.00 0.00 3.51
1675 1811 6.215121 TGTAAGTGCTTTTGTCATCCAAATG 58.785 36.000 0.00 0.00 42.45 2.32
1707 1843 1.882623 GAGTTTTCCTGCAGAGGGTTG 59.117 52.381 17.39 0.00 40.25 3.77
1708 1844 1.494721 AGTTTTCCTGCAGAGGGTTGA 59.505 47.619 17.39 0.00 40.25 3.18
1717 1853 5.045213 TCCTGCAGAGGGTTGATGTTAATAA 60.045 40.000 17.39 0.00 40.25 1.40
1723 1859 7.706607 GCAGAGGGTTGATGTTAATAAAATTCC 59.293 37.037 0.00 0.00 0.00 3.01
1743 1879 2.812011 CCGGTTAACTGCTTAGCTTTGT 59.188 45.455 9.06 0.00 0.00 2.83
1787 1924 7.309805 GCTTATCTTTGGTTTTTCCCTACATGT 60.310 37.037 2.69 2.69 34.77 3.21
1860 1997 7.185318 TGAGGCCATCATAAATTTTTGTGAT 57.815 32.000 5.01 8.84 45.82 3.06
1864 2001 6.534793 GGCCATCATAAATTTTTGTGATTCGT 59.465 34.615 11.23 0.00 43.54 3.85
1873 2010 2.118228 TTGTGATTCGTTGCTGCAAC 57.882 45.000 30.35 30.35 40.54 4.17
2051 2188 1.134936 TGCTTAAATCAGGCTACGCGA 60.135 47.619 15.93 0.00 0.00 5.87
2188 2325 9.341078 TCATTCATTGCTTGTATGCTATTTAGA 57.659 29.630 3.19 0.00 34.18 2.10
2241 2384 3.059352 GTGAGTTACACTGATGGCCTT 57.941 47.619 3.32 0.00 45.13 4.35
2262 2405 5.634859 CCTTTGACATTCATACTTTTGGCAC 59.365 40.000 0.00 0.00 0.00 5.01
2263 2406 5.781210 TTGACATTCATACTTTTGGCACA 57.219 34.783 0.00 0.00 0.00 4.57
2363 2506 3.879295 TCAGGCAACAGAGAAGAACAAAG 59.121 43.478 0.00 0.00 41.41 2.77
2369 2512 5.065218 GCAACAGAGAAGAACAAAGTCTTGA 59.935 40.000 0.00 0.00 37.98 3.02
2370 2513 6.238593 GCAACAGAGAAGAACAAAGTCTTGAT 60.239 38.462 0.00 0.00 37.98 2.57
2695 2838 1.001378 CAACTCCAACGAGCTTTTGGG 60.001 52.381 21.83 16.34 43.38 4.12
2943 3086 3.905784 TCTATATGCTGTGACATCGCTG 58.094 45.455 0.00 0.00 0.00 5.18
3088 3233 1.544691 TCTCGTGGCTTTCTGTACCTC 59.455 52.381 0.00 0.00 0.00 3.85
3113 3258 6.570672 ATTCCATTCTGCTAGCATTACATG 57.429 37.500 19.72 16.24 0.00 3.21
3143 3288 0.171903 ATGACTTGGCTTGCATTCGC 59.828 50.000 0.00 0.00 39.24 4.70
3170 3315 1.723542 CTGCGACTCACTTGCTTACTG 59.276 52.381 0.00 0.00 0.00 2.74
3242 3387 6.822667 TCATTTGTTCATGACATGCTTACT 57.177 33.333 10.76 0.00 38.26 2.24
3318 3463 5.056480 GCCCTGCTATGTCTTTTTGTTTTT 58.944 37.500 0.00 0.00 0.00 1.94
3373 3519 7.415206 GGCTACCATTTGTAGGTTTATGTTCAG 60.415 40.741 0.00 0.00 45.97 3.02
3502 3648 6.908870 ACTTTTGAGGCAATGAAAGAAAAC 57.091 33.333 8.30 0.00 34.20 2.43
3529 3675 4.430007 GACTTACGCCTGACATACATTCA 58.570 43.478 0.00 0.00 0.00 2.57
3565 3711 2.542411 GCATGCATTCGGGAAGCTAAAG 60.542 50.000 14.21 0.00 0.00 1.85
3667 3918 3.161866 TCCCTTTTAATGTGTTGCCCTC 58.838 45.455 0.00 0.00 0.00 4.30
3698 3951 5.126222 TCAGACAGAGGAAGCTAGTAATGTG 59.874 44.000 0.00 0.00 0.00 3.21
3910 4163 1.951209 TGATGTGGGCTTCACTCCTA 58.049 50.000 10.93 0.00 46.20 2.94
3963 4216 1.347707 TGCTCCCGTGAATCAGACTTT 59.652 47.619 0.00 0.00 0.00 2.66
3993 4246 0.536006 AGAAACTGCAGTCCCTGTGC 60.536 55.000 21.95 1.98 41.59 4.57
4116 4369 4.175962 TCCCTGATTTCAACCTCTACCTT 58.824 43.478 0.00 0.00 0.00 3.50
4119 4372 5.183904 CCCTGATTTCAACCTCTACCTTTTG 59.816 44.000 0.00 0.00 0.00 2.44
4146 4399 1.398390 CCTCAGCCGCAGTACATTTTC 59.602 52.381 0.00 0.00 0.00 2.29
4162 4415 6.839124 ACATTTTCACTGATTATGCCTTGA 57.161 33.333 0.00 0.00 0.00 3.02
4330 4583 4.222124 TCAGTATCCCAGGCTTTCTTTC 57.778 45.455 0.00 0.00 0.00 2.62
4333 4586 5.012893 CAGTATCCCAGGCTTTCTTTCTTT 58.987 41.667 0.00 0.00 0.00 2.52
4443 4699 1.751351 TCAGAGGATGGATGTGACGTC 59.249 52.381 9.11 9.11 0.00 4.34
4473 4729 7.940688 TCATCATAATGTTATCCTTCTGCATGT 59.059 33.333 0.00 0.00 34.32 3.21
4515 4772 1.675641 AGGTCGTGCCAATTCTGCC 60.676 57.895 2.06 0.00 40.61 4.85
4556 4813 1.212455 TGCAGTGCACGACGTACTTG 61.212 55.000 15.37 2.43 38.70 3.16
4605 4862 4.152607 GCAAGACTGCTTTTCTAGTTGG 57.847 45.455 0.00 0.00 45.74 3.77
4617 4874 7.550551 TGCTTTTCTAGTTGGTCTGATTATCAG 59.449 37.037 15.53 15.53 45.59 2.90
4664 4921 7.864108 TTCGATTGATGAACATAATGGAGTT 57.136 32.000 0.00 0.00 0.00 3.01
4707 4964 0.036388 ACCTTGGGTATGTCAGCGTG 60.036 55.000 0.00 0.00 32.11 5.34
4723 4981 2.761208 AGCGTGTATTTCTCTGCTACCT 59.239 45.455 0.00 0.00 0.00 3.08
4765 5023 9.671279 ATTATGAGAAATTTTGGGAAAATGACC 57.329 29.630 0.00 0.00 40.05 4.02
4770 5028 5.903198 AATTTTGGGAAAATGACCAAGGA 57.097 34.783 0.00 0.00 46.49 3.36
4809 6260 3.601443 AGTCCAAAAGAGTGATCCGAG 57.399 47.619 0.00 0.00 0.00 4.63
4868 6319 2.868839 GCAAGCTTAACGGAGGTACACA 60.869 50.000 0.00 0.00 0.00 3.72
4889 6340 1.006922 GACCACAGCAGGCAAAAGC 60.007 57.895 0.00 0.00 0.00 3.51
4913 6395 4.147322 CGAACGCGTCCACCATGC 62.147 66.667 14.44 0.00 0.00 4.06
4924 6406 1.033746 CCACCATGCAGGATTCGCTT 61.034 55.000 0.00 0.00 41.22 4.68
4925 6407 0.379669 CACCATGCAGGATTCGCTTC 59.620 55.000 0.00 0.00 41.22 3.86
4936 6418 0.944386 ATTCGCTTCGCACAAAGTGT 59.056 45.000 0.00 0.00 37.86 3.55
4960 6442 9.642327 TGTAACAACGTACACATAACAGATAAT 57.358 29.630 0.00 0.00 0.00 1.28
5024 6506 2.173964 GATACAATGGCGTTGCGAAAC 58.826 47.619 19.02 0.00 41.69 2.78
5052 6534 1.280710 TGATCCACCCAAACGTATGCT 59.719 47.619 0.00 0.00 0.00 3.79
5060 6542 3.886505 ACCCAAACGTATGCTTCTTTTCA 59.113 39.130 0.00 0.00 0.00 2.69
5072 6554 5.297547 TGCTTCTTTTCACGACAAGATAGT 58.702 37.500 0.00 0.00 0.00 2.12
5125 6609 1.244019 GCCAGTTGGTAGCCCACAAG 61.244 60.000 0.00 0.00 41.67 3.16
5126 6610 1.244019 CCAGTTGGTAGCCCACAAGC 61.244 60.000 0.00 0.00 41.67 4.01
5127 6611 1.074951 AGTTGGTAGCCCACAAGCC 59.925 57.895 0.00 0.00 41.67 4.35
5128 6612 1.228429 GTTGGTAGCCCACAAGCCA 60.228 57.895 0.00 0.00 41.67 4.75
5129 6613 1.228429 TTGGTAGCCCACAAGCCAC 60.228 57.895 0.00 0.00 41.67 5.01
5130 6614 2.000825 TTGGTAGCCCACAAGCCACA 62.001 55.000 0.00 0.00 41.67 4.17
5131 6615 1.228429 GGTAGCCCACAAGCCACAA 60.228 57.895 0.00 0.00 0.00 3.33
5153 6637 6.546034 ACAAAGGATACCCAATAATACTGCAC 59.454 38.462 0.00 0.00 33.88 4.57
5155 6639 6.260700 AGGATACCCAATAATACTGCACAA 57.739 37.500 0.00 0.00 33.88 3.33
5156 6640 6.299141 AGGATACCCAATAATACTGCACAAG 58.701 40.000 0.00 0.00 33.88 3.16
5157 6641 6.101150 AGGATACCCAATAATACTGCACAAGA 59.899 38.462 0.00 0.00 33.88 3.02
5158 6642 6.770785 GGATACCCAATAATACTGCACAAGAA 59.229 38.462 0.00 0.00 0.00 2.52
5159 6643 7.284489 GGATACCCAATAATACTGCACAAGAAA 59.716 37.037 0.00 0.00 0.00 2.52
5160 6644 6.267496 ACCCAATAATACTGCACAAGAAAC 57.733 37.500 0.00 0.00 0.00 2.78
5161 6645 6.010219 ACCCAATAATACTGCACAAGAAACT 58.990 36.000 0.00 0.00 0.00 2.66
5163 6647 7.668052 ACCCAATAATACTGCACAAGAAACTAA 59.332 33.333 0.00 0.00 0.00 2.24
5164 6648 8.184192 CCCAATAATACTGCACAAGAAACTAAG 58.816 37.037 0.00 0.00 0.00 2.18
5165 6649 8.946085 CCAATAATACTGCACAAGAAACTAAGA 58.054 33.333 0.00 0.00 0.00 2.10
5166 6650 9.979270 CAATAATACTGCACAAGAAACTAAGAG 57.021 33.333 0.00 0.00 0.00 2.85
5167 6651 8.723942 ATAATACTGCACAAGAAACTAAGAGG 57.276 34.615 0.00 0.00 0.00 3.69
5169 6653 5.546621 ACTGCACAAGAAACTAAGAGGTA 57.453 39.130 0.00 0.00 0.00 3.08
5170 6654 5.298347 ACTGCACAAGAAACTAAGAGGTAC 58.702 41.667 0.00 0.00 0.00 3.34
5171 6655 4.638304 TGCACAAGAAACTAAGAGGTACC 58.362 43.478 2.73 2.73 0.00 3.34
5172 6656 3.678548 GCACAAGAAACTAAGAGGTACCG 59.321 47.826 6.18 0.00 0.00 4.02
5173 6657 3.678548 CACAAGAAACTAAGAGGTACCGC 59.321 47.826 7.70 7.70 0.00 5.68
5174 6658 3.577415 ACAAGAAACTAAGAGGTACCGCT 59.423 43.478 13.04 13.04 0.00 5.52
5175 6659 4.768968 ACAAGAAACTAAGAGGTACCGCTA 59.231 41.667 19.29 6.61 0.00 4.26
5176 6660 5.244626 ACAAGAAACTAAGAGGTACCGCTAA 59.755 40.000 19.29 0.00 0.00 3.09
5177 6661 5.990120 AGAAACTAAGAGGTACCGCTAAA 57.010 39.130 19.29 9.31 0.00 1.85
5178 6662 6.350629 AGAAACTAAGAGGTACCGCTAAAA 57.649 37.500 19.29 6.82 0.00 1.52
5179 6663 6.762333 AGAAACTAAGAGGTACCGCTAAAAA 58.238 36.000 19.29 4.38 0.00 1.94
5258 6742 8.840200 TTATCCCATCTATATCCAGAACCTAC 57.160 38.462 0.00 0.00 0.00 3.18
5272 6756 8.712285 TCCAGAACCTACAATTAAATAGAACG 57.288 34.615 0.00 0.00 0.00 3.95
5318 6803 8.570068 AAAAACACTTACACCAAGACTAAAGA 57.430 30.769 0.00 0.00 37.71 2.52
5319 6804 8.570068 AAAACACTTACACCAAGACTAAAGAA 57.430 30.769 0.00 0.00 37.71 2.52
5320 6805 7.549615 AACACTTACACCAAGACTAAAGAAC 57.450 36.000 0.00 0.00 37.71 3.01
5321 6806 6.646267 ACACTTACACCAAGACTAAAGAACA 58.354 36.000 0.00 0.00 37.71 3.18
5322 6807 7.107542 ACACTTACACCAAGACTAAAGAACAA 58.892 34.615 0.00 0.00 37.71 2.83
5323 6808 7.773690 ACACTTACACCAAGACTAAAGAACAAT 59.226 33.333 0.00 0.00 37.71 2.71
5324 6809 9.268268 CACTTACACCAAGACTAAAGAACAATA 57.732 33.333 0.00 0.00 37.71 1.90
5325 6810 9.841295 ACTTACACCAAGACTAAAGAACAATAA 57.159 29.630 0.00 0.00 37.71 1.40
5327 6812 9.841295 TTACACCAAGACTAAAGAACAATAAGT 57.159 29.630 0.00 0.00 0.00 2.24
5357 6842 8.861086 TCTCTATTACTCCAAACTACATCATCC 58.139 37.037 0.00 0.00 0.00 3.51
5358 6843 8.547481 TCTATTACTCCAAACTACATCATCCA 57.453 34.615 0.00 0.00 0.00 3.41
5359 6844 8.421784 TCTATTACTCCAAACTACATCATCCAC 58.578 37.037 0.00 0.00 0.00 4.02
5360 6845 4.908601 ACTCCAAACTACATCATCCACA 57.091 40.909 0.00 0.00 0.00 4.17
5361 6846 5.241403 ACTCCAAACTACATCATCCACAA 57.759 39.130 0.00 0.00 0.00 3.33
5362 6847 5.003804 ACTCCAAACTACATCATCCACAAC 58.996 41.667 0.00 0.00 0.00 3.32
5363 6848 5.221925 ACTCCAAACTACATCATCCACAACT 60.222 40.000 0.00 0.00 0.00 3.16
5364 6849 5.630121 TCCAAACTACATCATCCACAACTT 58.370 37.500 0.00 0.00 0.00 2.66
5365 6850 5.705441 TCCAAACTACATCATCCACAACTTC 59.295 40.000 0.00 0.00 0.00 3.01
5366 6851 5.707298 CCAAACTACATCATCCACAACTTCT 59.293 40.000 0.00 0.00 0.00 2.85
5367 6852 6.878923 CCAAACTACATCATCCACAACTTCTA 59.121 38.462 0.00 0.00 0.00 2.10
5368 6853 7.554118 CCAAACTACATCATCCACAACTTCTAT 59.446 37.037 0.00 0.00 0.00 1.98
5369 6854 8.393366 CAAACTACATCATCCACAACTTCTATG 58.607 37.037 0.00 0.00 0.00 2.23
5370 6855 7.423844 ACTACATCATCCACAACTTCTATGA 57.576 36.000 0.00 0.00 0.00 2.15
5371 6856 8.027524 ACTACATCATCCACAACTTCTATGAT 57.972 34.615 0.00 0.00 37.69 2.45
5372 6857 9.147732 ACTACATCATCCACAACTTCTATGATA 57.852 33.333 0.00 0.00 35.61 2.15
5375 6860 8.654094 ACATCATCCACAACTTCTATGATATCA 58.346 33.333 8.10 8.10 35.61 2.15
5376 6861 8.933807 CATCATCCACAACTTCTATGATATCAC 58.066 37.037 7.78 0.00 35.61 3.06
5377 6862 8.021898 TCATCCACAACTTCTATGATATCACA 57.978 34.615 7.78 0.00 0.00 3.58
5378 6863 7.928167 TCATCCACAACTTCTATGATATCACAC 59.072 37.037 7.78 0.00 0.00 3.82
5379 6864 7.423844 TCCACAACTTCTATGATATCACACT 57.576 36.000 7.78 0.00 0.00 3.55
5380 6865 7.851228 TCCACAACTTCTATGATATCACACTT 58.149 34.615 7.78 0.00 0.00 3.16
5381 6866 7.981789 TCCACAACTTCTATGATATCACACTTC 59.018 37.037 7.78 0.00 0.00 3.01
5382 6867 7.765819 CCACAACTTCTATGATATCACACTTCA 59.234 37.037 7.78 0.00 0.00 3.02
5383 6868 8.598924 CACAACTTCTATGATATCACACTTCAC 58.401 37.037 7.78 0.00 0.00 3.18
5384 6869 8.314021 ACAACTTCTATGATATCACACTTCACA 58.686 33.333 7.78 0.00 0.00 3.58
5385 6870 9.154847 CAACTTCTATGATATCACACTTCACAA 57.845 33.333 7.78 0.00 0.00 3.33
5386 6871 8.939201 ACTTCTATGATATCACACTTCACAAG 57.061 34.615 7.78 4.85 0.00 3.16
5387 6872 7.493971 ACTTCTATGATATCACACTTCACAAGC 59.506 37.037 7.78 0.00 0.00 4.01
5388 6873 7.117285 TCTATGATATCACACTTCACAAGCT 57.883 36.000 7.78 0.00 0.00 3.74
5389 6874 7.205992 TCTATGATATCACACTTCACAAGCTC 58.794 38.462 7.78 0.00 0.00 4.09
5390 6875 4.507710 TGATATCACACTTCACAAGCTCC 58.492 43.478 0.00 0.00 0.00 4.70
5391 6876 2.191128 ATCACACTTCACAAGCTCCC 57.809 50.000 0.00 0.00 0.00 4.30
5392 6877 0.836606 TCACACTTCACAAGCTCCCA 59.163 50.000 0.00 0.00 0.00 4.37
5393 6878 1.202687 TCACACTTCACAAGCTCCCAG 60.203 52.381 0.00 0.00 0.00 4.45
5394 6879 0.536006 ACACTTCACAAGCTCCCAGC 60.536 55.000 0.00 0.00 42.84 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.052759 AGAAAAACGATTGACTAGTTGTGTTAT 57.947 29.630 0.00 0.00 0.00 1.89
27 28 8.428186 AGAAAAACGATTGACTAGTTGTGTTA 57.572 30.769 0.00 0.00 0.00 2.41
28 29 7.316544 AGAAAAACGATTGACTAGTTGTGTT 57.683 32.000 0.00 0.00 0.00 3.32
29 30 6.920569 AGAAAAACGATTGACTAGTTGTGT 57.079 33.333 0.00 0.00 0.00 3.72
30 31 8.332464 TGTAAGAAAAACGATTGACTAGTTGTG 58.668 33.333 0.00 0.00 0.00 3.33
31 32 8.428186 TGTAAGAAAAACGATTGACTAGTTGT 57.572 30.769 0.00 0.00 0.00 3.32
37 38 9.226606 TGGATTATGTAAGAAAAACGATTGACT 57.773 29.630 0.00 0.00 0.00 3.41
55 56 9.793252 CCTTGTTTTCAGTTAAGATGGATTATG 57.207 33.333 0.00 0.00 0.00 1.90
56 57 9.753674 TCCTTGTTTTCAGTTAAGATGGATTAT 57.246 29.630 0.00 0.00 0.00 1.28
57 58 9.010029 GTCCTTGTTTTCAGTTAAGATGGATTA 57.990 33.333 0.00 0.00 29.08 1.75
58 59 7.505585 TGTCCTTGTTTTCAGTTAAGATGGATT 59.494 33.333 0.00 0.00 29.08 3.01
59 60 7.004086 TGTCCTTGTTTTCAGTTAAGATGGAT 58.996 34.615 0.00 0.00 29.08 3.41
60 61 6.262273 GTGTCCTTGTTTTCAGTTAAGATGGA 59.738 38.462 0.00 0.00 0.00 3.41
61 62 6.438763 GTGTCCTTGTTTTCAGTTAAGATGG 58.561 40.000 0.00 0.00 0.00 3.51
62 63 6.136071 CGTGTCCTTGTTTTCAGTTAAGATG 58.864 40.000 0.00 0.00 0.00 2.90
63 64 5.277828 GCGTGTCCTTGTTTTCAGTTAAGAT 60.278 40.000 0.00 0.00 0.00 2.40
64 65 4.034742 GCGTGTCCTTGTTTTCAGTTAAGA 59.965 41.667 0.00 0.00 0.00 2.10
65 66 4.201871 TGCGTGTCCTTGTTTTCAGTTAAG 60.202 41.667 0.00 0.00 0.00 1.85
66 67 3.690139 TGCGTGTCCTTGTTTTCAGTTAA 59.310 39.130 0.00 0.00 0.00 2.01
67 68 3.271729 TGCGTGTCCTTGTTTTCAGTTA 58.728 40.909 0.00 0.00 0.00 2.24
68 69 2.088423 TGCGTGTCCTTGTTTTCAGTT 58.912 42.857 0.00 0.00 0.00 3.16
69 70 1.745232 TGCGTGTCCTTGTTTTCAGT 58.255 45.000 0.00 0.00 0.00 3.41
70 71 2.653890 CATGCGTGTCCTTGTTTTCAG 58.346 47.619 0.00 0.00 0.00 3.02
71 72 1.268999 GCATGCGTGTCCTTGTTTTCA 60.269 47.619 0.00 0.00 0.00 2.69
72 73 1.001378 AGCATGCGTGTCCTTGTTTTC 60.001 47.619 13.01 0.00 0.00 2.29
73 74 1.032014 AGCATGCGTGTCCTTGTTTT 58.968 45.000 13.01 0.00 0.00 2.43
74 75 1.535462 GTAGCATGCGTGTCCTTGTTT 59.465 47.619 13.01 0.00 0.00 2.83
75 76 1.156736 GTAGCATGCGTGTCCTTGTT 58.843 50.000 13.01 0.00 0.00 2.83
76 77 0.321671 AGTAGCATGCGTGTCCTTGT 59.678 50.000 13.01 0.00 0.00 3.16
77 78 1.394917 GAAGTAGCATGCGTGTCCTTG 59.605 52.381 13.01 0.00 0.00 3.61
78 79 1.276421 AGAAGTAGCATGCGTGTCCTT 59.724 47.619 13.01 10.63 0.00 3.36
79 80 0.898320 AGAAGTAGCATGCGTGTCCT 59.102 50.000 13.01 5.61 0.00 3.85
80 81 1.134965 AGAGAAGTAGCATGCGTGTCC 60.135 52.381 13.01 3.18 0.00 4.02
81 82 1.923204 CAGAGAAGTAGCATGCGTGTC 59.077 52.381 13.01 8.71 0.00 3.67
82 83 1.273606 ACAGAGAAGTAGCATGCGTGT 59.726 47.619 13.01 4.34 0.00 4.49
83 84 2.001812 ACAGAGAAGTAGCATGCGTG 57.998 50.000 13.01 0.09 0.00 5.34
84 85 3.381590 TGATACAGAGAAGTAGCATGCGT 59.618 43.478 13.01 3.09 35.66 5.24
85 86 3.969899 TGATACAGAGAAGTAGCATGCG 58.030 45.455 13.01 0.00 35.66 4.73
86 87 5.814705 ACTTTGATACAGAGAAGTAGCATGC 59.185 40.000 10.51 10.51 39.77 4.06
87 88 8.976471 CATACTTTGATACAGAGAAGTAGCATG 58.024 37.037 0.00 0.00 39.77 4.06
88 89 8.700051 ACATACTTTGATACAGAGAAGTAGCAT 58.300 33.333 0.00 0.00 39.77 3.79
89 90 8.067751 ACATACTTTGATACAGAGAAGTAGCA 57.932 34.615 0.00 0.00 38.48 3.49
90 91 8.410141 AGACATACTTTGATACAGAGAAGTAGC 58.590 37.037 0.00 0.00 37.82 3.58
91 92 9.944663 GAGACATACTTTGATACAGAGAAGTAG 57.055 37.037 0.00 0.00 37.82 2.57
92 93 9.462606 TGAGACATACTTTGATACAGAGAAGTA 57.537 33.333 0.00 0.00 38.51 2.24
93 94 8.354711 TGAGACATACTTTGATACAGAGAAGT 57.645 34.615 0.00 0.00 36.42 3.01
94 95 8.681806 TCTGAGACATACTTTGATACAGAGAAG 58.318 37.037 0.00 0.00 32.38 2.85
95 96 8.581253 TCTGAGACATACTTTGATACAGAGAA 57.419 34.615 0.00 0.00 32.38 2.87
96 97 7.284261 CCTCTGAGACATACTTTGATACAGAGA 59.716 40.741 17.88 0.00 43.13 3.10
97 98 7.068103 ACCTCTGAGACATACTTTGATACAGAG 59.932 40.741 6.17 0.00 41.94 3.35
98 99 6.892456 ACCTCTGAGACATACTTTGATACAGA 59.108 38.462 6.17 0.00 33.73 3.41
99 100 7.106439 ACCTCTGAGACATACTTTGATACAG 57.894 40.000 6.17 0.00 0.00 2.74
100 101 8.589701 TTACCTCTGAGACATACTTTGATACA 57.410 34.615 6.17 0.00 0.00 2.29
108 109 9.523168 GGAGTATTATTACCTCTGAGACATACT 57.477 37.037 6.17 7.85 0.00 2.12
109 110 8.741841 GGGAGTATTATTACCTCTGAGACATAC 58.258 40.741 6.17 3.68 0.00 2.39
110 111 8.679725 AGGGAGTATTATTACCTCTGAGACATA 58.320 37.037 6.17 0.00 0.00 2.29
111 112 7.540183 AGGGAGTATTATTACCTCTGAGACAT 58.460 38.462 6.17 0.00 0.00 3.06
112 113 6.923670 AGGGAGTATTATTACCTCTGAGACA 58.076 40.000 6.17 0.00 0.00 3.41
113 114 8.937207 TTAGGGAGTATTATTACCTCTGAGAC 57.063 38.462 6.17 0.00 32.87 3.36
114 115 9.589461 CTTTAGGGAGTATTATTACCTCTGAGA 57.411 37.037 6.17 0.00 32.87 3.27
115 116 9.589461 TCTTTAGGGAGTATTATTACCTCTGAG 57.411 37.037 0.00 0.00 32.87 3.35
116 117 9.947189 TTCTTTAGGGAGTATTATTACCTCTGA 57.053 33.333 0.00 0.00 32.87 3.27
169 170 9.988815 AAATACAAGAGCGTTTAGATATGATCT 57.011 29.630 0.00 0.00 43.33 2.75
171 172 9.988815 AGAAATACAAGAGCGTTTAGATATGAT 57.011 29.630 0.00 0.00 0.00 2.45
172 173 9.817809 AAGAAATACAAGAGCGTTTAGATATGA 57.182 29.630 0.00 0.00 0.00 2.15
176 177 8.997621 TGTAAGAAATACAAGAGCGTTTAGAT 57.002 30.769 0.00 0.00 41.52 1.98
177 178 8.301720 TCTGTAAGAAATACAAGAGCGTTTAGA 58.698 33.333 0.00 0.00 42.31 2.10
178 179 8.462143 TCTGTAAGAAATACAAGAGCGTTTAG 57.538 34.615 0.00 0.00 42.31 1.85
179 180 8.301720 TCTCTGTAAGAAATACAAGAGCGTTTA 58.698 33.333 0.00 0.00 46.34 2.01
180 181 7.152645 TCTCTGTAAGAAATACAAGAGCGTTT 58.847 34.615 0.00 0.00 46.34 3.60
181 182 6.688578 TCTCTGTAAGAAATACAAGAGCGTT 58.311 36.000 0.00 0.00 46.34 4.84
182 183 6.151312 TCTCTCTGTAAGAAATACAAGAGCGT 59.849 38.462 15.34 0.00 46.34 5.07
183 184 6.556212 TCTCTCTGTAAGAAATACAAGAGCG 58.444 40.000 15.34 8.99 46.34 5.03
184 185 7.543756 ACTCTCTCTGTAAGAAATACAAGAGC 58.456 38.462 12.40 0.00 46.34 4.09
186 187 9.742144 ACTACTCTCTCTGTAAGAAATACAAGA 57.258 33.333 0.00 0.00 46.34 3.02
189 190 9.516546 TGAACTACTCTCTCTGTAAGAAATACA 57.483 33.333 0.00 0.00 46.34 2.29
190 191 9.777575 GTGAACTACTCTCTCTGTAAGAAATAC 57.222 37.037 0.00 0.00 46.34 1.89
191 192 9.516546 TGTGAACTACTCTCTCTGTAAGAAATA 57.483 33.333 0.00 0.00 46.34 1.40
192 193 8.410673 TGTGAACTACTCTCTCTGTAAGAAAT 57.589 34.615 0.00 0.00 46.34 2.17
193 194 7.720074 TCTGTGAACTACTCTCTCTGTAAGAAA 59.280 37.037 0.00 0.00 46.34 2.52
194 195 7.225011 TCTGTGAACTACTCTCTCTGTAAGAA 58.775 38.462 0.00 0.00 46.34 2.52
195 196 6.770542 TCTGTGAACTACTCTCTCTGTAAGA 58.229 40.000 0.00 0.00 43.69 2.10
196 197 7.441890 TTCTGTGAACTACTCTCTCTGTAAG 57.558 40.000 0.00 0.00 0.00 2.34
197 198 7.818997 TTTCTGTGAACTACTCTCTCTGTAA 57.181 36.000 0.00 0.00 0.00 2.41
198 199 9.516546 TTATTTCTGTGAACTACTCTCTCTGTA 57.483 33.333 0.00 0.00 0.00 2.74
199 200 6.909550 ATTTCTGTGAACTACTCTCTCTGT 57.090 37.500 0.00 0.00 0.00 3.41
200 201 9.868277 AATTATTTCTGTGAACTACTCTCTCTG 57.132 33.333 0.00 0.00 0.00 3.35
208 209 9.937175 GCCTCATAAATTATTTCTGTGAACTAC 57.063 33.333 0.00 0.00 0.00 2.73
209 210 9.905713 AGCCTCATAAATTATTTCTGTGAACTA 57.094 29.630 0.00 0.00 0.00 2.24
210 211 8.814038 AGCCTCATAAATTATTTCTGTGAACT 57.186 30.769 0.00 0.00 0.00 3.01
211 212 9.508567 GAAGCCTCATAAATTATTTCTGTGAAC 57.491 33.333 0.00 0.00 0.00 3.18
212 213 9.241919 TGAAGCCTCATAAATTATTTCTGTGAA 57.758 29.630 0.00 0.00 0.00 3.18
213 214 8.806429 TGAAGCCTCATAAATTATTTCTGTGA 57.194 30.769 0.00 0.00 0.00 3.58
214 215 7.646922 GCTGAAGCCTCATAAATTATTTCTGTG 59.353 37.037 0.00 0.00 34.31 3.66
215 216 7.467811 CGCTGAAGCCTCATAAATTATTTCTGT 60.468 37.037 0.00 0.00 37.91 3.41
216 217 6.854892 CGCTGAAGCCTCATAAATTATTTCTG 59.145 38.462 0.00 0.00 37.91 3.02
217 218 6.514048 GCGCTGAAGCCTCATAAATTATTTCT 60.514 38.462 0.00 0.00 37.91 2.52
218 219 5.626955 GCGCTGAAGCCTCATAAATTATTTC 59.373 40.000 0.00 0.00 37.91 2.17
219 220 5.067674 TGCGCTGAAGCCTCATAAATTATTT 59.932 36.000 9.73 0.00 37.91 1.40
220 221 4.580167 TGCGCTGAAGCCTCATAAATTATT 59.420 37.500 9.73 0.00 37.91 1.40
221 222 4.136796 TGCGCTGAAGCCTCATAAATTAT 58.863 39.130 9.73 0.00 37.91 1.28
222 223 3.540617 TGCGCTGAAGCCTCATAAATTA 58.459 40.909 9.73 0.00 37.91 1.40
223 224 2.368439 TGCGCTGAAGCCTCATAAATT 58.632 42.857 9.73 0.00 37.91 1.82
224 225 2.042686 TGCGCTGAAGCCTCATAAAT 57.957 45.000 9.73 0.00 37.91 1.40
225 226 1.739466 CTTGCGCTGAAGCCTCATAAA 59.261 47.619 9.73 0.00 37.91 1.40
226 227 1.339055 ACTTGCGCTGAAGCCTCATAA 60.339 47.619 9.73 0.00 37.91 1.90
227 228 0.250234 ACTTGCGCTGAAGCCTCATA 59.750 50.000 9.73 0.00 37.91 2.15
228 229 0.250234 TACTTGCGCTGAAGCCTCAT 59.750 50.000 9.73 0.00 37.91 2.90
229 230 0.670546 GTACTTGCGCTGAAGCCTCA 60.671 55.000 9.73 0.00 37.91 3.86
230 231 0.670546 TGTACTTGCGCTGAAGCCTC 60.671 55.000 9.73 0.05 37.91 4.70
231 232 0.250295 TTGTACTTGCGCTGAAGCCT 60.250 50.000 9.73 0.00 37.91 4.58
232 233 0.110192 GTTGTACTTGCGCTGAAGCC 60.110 55.000 9.73 0.00 37.91 4.35
233 234 0.586319 TGTTGTACTTGCGCTGAAGC 59.414 50.000 9.73 0.00 37.78 3.86
234 235 3.035942 GTTTGTTGTACTTGCGCTGAAG 58.964 45.455 9.73 7.54 0.00 3.02
235 236 2.680841 AGTTTGTTGTACTTGCGCTGAA 59.319 40.909 9.73 0.00 0.00 3.02
236 237 2.285083 AGTTTGTTGTACTTGCGCTGA 58.715 42.857 9.73 0.00 0.00 4.26
237 238 2.755836 AGTTTGTTGTACTTGCGCTG 57.244 45.000 9.73 3.92 0.00 5.18
238 239 2.680841 TGAAGTTTGTTGTACTTGCGCT 59.319 40.909 9.73 0.00 36.04 5.92
239 240 2.781646 GTGAAGTTTGTTGTACTTGCGC 59.218 45.455 0.00 0.00 36.04 6.09
240 241 3.026349 CGTGAAGTTTGTTGTACTTGCG 58.974 45.455 0.00 0.00 36.04 4.85
241 242 4.267357 TCGTGAAGTTTGTTGTACTTGC 57.733 40.909 0.00 0.00 36.04 4.01
242 243 6.964370 TGAAATCGTGAAGTTTGTTGTACTTG 59.036 34.615 0.00 0.00 36.04 3.16
243 244 7.079182 TGAAATCGTGAAGTTTGTTGTACTT 57.921 32.000 0.00 0.00 38.49 2.24
244 245 6.671614 TGAAATCGTGAAGTTTGTTGTACT 57.328 33.333 0.00 0.00 0.00 2.73
245 246 9.262472 GATATGAAATCGTGAAGTTTGTTGTAC 57.738 33.333 0.00 0.00 0.00 2.90
246 247 8.994170 TGATATGAAATCGTGAAGTTTGTTGTA 58.006 29.630 0.00 0.00 0.00 2.41
247 248 7.870826 TGATATGAAATCGTGAAGTTTGTTGT 58.129 30.769 0.00 0.00 0.00 3.32
248 249 7.482743 CCTGATATGAAATCGTGAAGTTTGTTG 59.517 37.037 0.00 0.00 0.00 3.33
249 250 7.390440 TCCTGATATGAAATCGTGAAGTTTGTT 59.610 33.333 0.00 0.00 0.00 2.83
250 251 6.878923 TCCTGATATGAAATCGTGAAGTTTGT 59.121 34.615 0.00 0.00 0.00 2.83
251 252 7.307493 TCCTGATATGAAATCGTGAAGTTTG 57.693 36.000 0.00 0.00 0.00 2.93
252 253 7.770433 TGATCCTGATATGAAATCGTGAAGTTT 59.230 33.333 0.00 0.00 0.00 2.66
253 254 7.225538 GTGATCCTGATATGAAATCGTGAAGTT 59.774 37.037 0.00 0.00 0.00 2.66
254 255 6.703607 GTGATCCTGATATGAAATCGTGAAGT 59.296 38.462 0.00 0.00 0.00 3.01
255 256 6.703165 TGTGATCCTGATATGAAATCGTGAAG 59.297 38.462 0.00 0.00 0.00 3.02
256 257 6.581712 TGTGATCCTGATATGAAATCGTGAA 58.418 36.000 0.00 0.00 0.00 3.18
257 258 6.160576 TGTGATCCTGATATGAAATCGTGA 57.839 37.500 0.00 0.00 0.00 4.35
258 259 6.481313 ACTTGTGATCCTGATATGAAATCGTG 59.519 38.462 0.00 0.00 0.00 4.35
259 260 6.481313 CACTTGTGATCCTGATATGAAATCGT 59.519 38.462 0.00 0.00 0.00 3.73
260 261 6.481313 ACACTTGTGATCCTGATATGAAATCG 59.519 38.462 7.83 0.00 0.00 3.34
261 262 7.496920 TGACACTTGTGATCCTGATATGAAATC 59.503 37.037 7.83 0.00 0.00 2.17
262 263 7.341030 TGACACTTGTGATCCTGATATGAAAT 58.659 34.615 7.83 0.00 0.00 2.17
263 264 6.710278 TGACACTTGTGATCCTGATATGAAA 58.290 36.000 7.83 0.00 0.00 2.69
264 265 6.298441 TGACACTTGTGATCCTGATATGAA 57.702 37.500 7.83 0.00 0.00 2.57
265 266 5.937975 TGACACTTGTGATCCTGATATGA 57.062 39.130 7.83 0.00 0.00 2.15
266 267 6.017357 CCATTGACACTTGTGATCCTGATATG 60.017 42.308 7.83 0.00 0.00 1.78
267 268 6.060136 CCATTGACACTTGTGATCCTGATAT 58.940 40.000 7.83 0.00 0.00 1.63
268 269 5.045651 ACCATTGACACTTGTGATCCTGATA 60.046 40.000 7.83 0.00 0.00 2.15
269 270 4.263639 ACCATTGACACTTGTGATCCTGAT 60.264 41.667 7.83 0.00 0.00 2.90
270 271 3.072915 ACCATTGACACTTGTGATCCTGA 59.927 43.478 7.83 0.00 0.00 3.86
271 272 3.415212 ACCATTGACACTTGTGATCCTG 58.585 45.455 7.83 0.65 0.00 3.86
272 273 3.328931 AGACCATTGACACTTGTGATCCT 59.671 43.478 7.83 0.00 0.00 3.24
273 274 3.438087 CAGACCATTGACACTTGTGATCC 59.562 47.826 7.83 0.00 0.00 3.36
274 275 3.438087 CCAGACCATTGACACTTGTGATC 59.562 47.826 7.83 2.71 0.00 2.92
275 276 3.415212 CCAGACCATTGACACTTGTGAT 58.585 45.455 7.83 0.00 0.00 3.06
276 277 2.487086 CCCAGACCATTGACACTTGTGA 60.487 50.000 7.83 0.00 0.00 3.58
277 278 1.881973 CCCAGACCATTGACACTTGTG 59.118 52.381 0.00 0.00 0.00 3.33
278 279 1.819305 GCCCAGACCATTGACACTTGT 60.819 52.381 0.00 0.00 0.00 3.16
279 280 0.883833 GCCCAGACCATTGACACTTG 59.116 55.000 0.00 0.00 0.00 3.16
280 281 0.606401 CGCCCAGACCATTGACACTT 60.606 55.000 0.00 0.00 0.00 3.16
281 282 1.003355 CGCCCAGACCATTGACACT 60.003 57.895 0.00 0.00 0.00 3.55
282 283 1.298859 GACGCCCAGACCATTGACAC 61.299 60.000 0.00 0.00 0.00 3.67
283 284 1.003839 GACGCCCAGACCATTGACA 60.004 57.895 0.00 0.00 0.00 3.58
284 285 1.745489 GGACGCCCAGACCATTGAC 60.745 63.158 0.00 0.00 34.74 3.18
285 286 2.220586 TGGACGCCCAGACCATTGA 61.221 57.895 0.00 0.00 39.66 2.57
286 287 2.350895 TGGACGCCCAGACCATTG 59.649 61.111 0.00 0.00 39.66 2.82
294 295 2.668632 GGAATGACTGGACGCCCA 59.331 61.111 0.00 0.00 40.95 5.36
295 296 2.511600 CGGAATGACTGGACGCCC 60.512 66.667 0.00 0.00 0.00 6.13
296 297 3.195698 GCGGAATGACTGGACGCC 61.196 66.667 0.00 0.00 44.01 5.68
298 299 0.527817 GTAGGCGGAATGACTGGACG 60.528 60.000 0.00 0.00 35.81 4.79
299 300 0.527817 CGTAGGCGGAATGACTGGAC 60.528 60.000 0.00 0.00 35.81 4.02
300 301 1.813859 CGTAGGCGGAATGACTGGA 59.186 57.895 0.00 0.00 35.81 3.86
301 302 4.420143 CGTAGGCGGAATGACTGG 57.580 61.111 0.00 0.00 35.81 4.00
314 315 4.056050 CAGGAAAATAATCGTCCCCGTAG 58.944 47.826 0.00 0.00 35.01 3.51
315 316 3.705579 TCAGGAAAATAATCGTCCCCGTA 59.294 43.478 0.00 0.00 35.01 4.02
316 317 2.502538 TCAGGAAAATAATCGTCCCCGT 59.497 45.455 0.00 0.00 35.01 5.28
317 318 3.188159 TCAGGAAAATAATCGTCCCCG 57.812 47.619 0.00 0.00 31.25 5.73
318 319 5.907866 TTTTCAGGAAAATAATCGTCCCC 57.092 39.130 3.19 0.00 35.57 4.81
1485 1614 1.059913 AGCTATCACCCTACCATGCC 58.940 55.000 0.00 0.00 0.00 4.40
1542 1671 0.393537 AAGGAGAATGGGCTTGAGCG 60.394 55.000 0.00 0.00 43.26 5.03
1576 1711 4.305989 TCAAAGTTCTCAGCGCATTTTT 57.694 36.364 11.47 0.00 0.00 1.94
1578 1713 3.119708 GGATCAAAGTTCTCAGCGCATTT 60.120 43.478 11.47 0.00 0.00 2.32
1579 1714 2.421424 GGATCAAAGTTCTCAGCGCATT 59.579 45.455 11.47 0.00 0.00 3.56
1580 1715 2.012673 GGATCAAAGTTCTCAGCGCAT 58.987 47.619 11.47 0.00 0.00 4.73
1581 1716 1.270785 TGGATCAAAGTTCTCAGCGCA 60.271 47.619 11.47 0.00 0.00 6.09
1582 1717 1.442769 TGGATCAAAGTTCTCAGCGC 58.557 50.000 0.00 0.00 0.00 5.92
1583 1718 2.353889 CCATGGATCAAAGTTCTCAGCG 59.646 50.000 5.56 0.00 0.00 5.18
1585 1720 3.349927 TGCCATGGATCAAAGTTCTCAG 58.650 45.455 18.40 0.00 0.00 3.35
1586 1721 3.438216 TGCCATGGATCAAAGTTCTCA 57.562 42.857 18.40 0.00 0.00 3.27
1587 1722 4.303086 CATGCCATGGATCAAAGTTCTC 57.697 45.455 18.40 0.00 0.00 2.87
1600 1736 0.457166 CTCAAACGTGCCATGCCATG 60.457 55.000 0.00 0.00 0.00 3.66
1601 1737 0.608856 TCTCAAACGTGCCATGCCAT 60.609 50.000 0.00 0.00 0.00 4.40
1602 1738 0.608856 ATCTCAAACGTGCCATGCCA 60.609 50.000 0.00 0.00 0.00 4.92
1603 1739 0.527565 AATCTCAAACGTGCCATGCC 59.472 50.000 0.00 0.00 0.00 4.40
1604 1740 1.987770 CAAATCTCAAACGTGCCATGC 59.012 47.619 0.00 0.00 0.00 4.06
1610 1746 3.970610 CAGTGAAGCAAATCTCAAACGTG 59.029 43.478 0.00 0.00 0.00 4.49
1631 1767 5.808366 ACAAATGTAGTCTCAGGAACTCA 57.192 39.130 0.00 0.00 34.60 3.41
1635 1771 5.932303 GCACTTACAAATGTAGTCTCAGGAA 59.068 40.000 0.00 0.00 0.00 3.36
1636 1772 5.246203 AGCACTTACAAATGTAGTCTCAGGA 59.754 40.000 0.00 0.00 0.00 3.86
1637 1773 5.482908 AGCACTTACAAATGTAGTCTCAGG 58.517 41.667 0.00 0.00 0.00 3.86
1638 1774 7.426929 AAAGCACTTACAAATGTAGTCTCAG 57.573 36.000 0.00 0.00 0.00 3.35
1639 1775 7.282224 ACAAAAGCACTTACAAATGTAGTCTCA 59.718 33.333 0.00 0.00 0.00 3.27
1640 1776 7.639945 ACAAAAGCACTTACAAATGTAGTCTC 58.360 34.615 0.00 0.00 0.00 3.36
1647 1783 6.215121 TGGATGACAAAAGCACTTACAAATG 58.785 36.000 0.00 0.00 0.00 2.32
1670 1806 5.950965 AAACTCGATAGTCTACGCATTTG 57.049 39.130 0.00 0.00 33.75 2.32
1675 1811 4.036352 CAGGAAAACTCGATAGTCTACGC 58.964 47.826 0.00 0.00 33.75 4.42
1676 1812 4.036352 GCAGGAAAACTCGATAGTCTACG 58.964 47.826 0.00 0.00 33.75 3.51
1707 1843 9.016623 GCAGTTAACCGGAATTTTATTAACATC 57.983 33.333 9.46 3.31 37.92 3.06
1708 1844 8.745590 AGCAGTTAACCGGAATTTTATTAACAT 58.254 29.630 9.46 0.00 37.92 2.71
1717 1853 4.332828 AGCTAAGCAGTTAACCGGAATTT 58.667 39.130 9.46 0.00 0.00 1.82
1723 1859 4.483476 AACAAAGCTAAGCAGTTAACCG 57.517 40.909 0.88 0.00 0.00 4.44
1748 1885 0.747255 GATAAGCTGTCTCGGCCAGA 59.253 55.000 2.24 1.64 36.20 3.86
1750 1887 1.195115 AAGATAAGCTGTCTCGGCCA 58.805 50.000 2.24 0.00 36.20 5.36
1753 1890 3.252974 ACCAAAGATAAGCTGTCTCGG 57.747 47.619 12.62 12.62 0.00 4.63
1759 1896 5.728637 AGGGAAAAACCAAAGATAAGCTG 57.271 39.130 0.00 0.00 41.20 4.24
1787 1924 3.565482 GCATAAGCTACTGCCATGCTAAA 59.435 43.478 8.83 0.00 46.19 1.85
1836 1973 6.602410 TCACAAAAATTTATGATGGCCTCA 57.398 33.333 3.32 5.76 38.53 3.86
1860 1997 1.530852 CGACTTTGTTGCAGCAACGAA 60.531 47.619 30.83 30.83 46.13 3.85
1864 2001 1.065600 GCCGACTTTGTTGCAGCAA 59.934 52.632 12.36 12.36 0.00 3.91
1873 2010 4.656041 GATCATTCTGAAAGCCGACTTTG 58.344 43.478 0.00 0.00 46.20 2.77
1907 2044 5.066893 GCAGCATCCTGATTTCAACAGATAA 59.933 40.000 0.00 0.00 41.77 1.75
2051 2188 6.893583 ACTCAGCAAATACAGGTGAAGATAT 58.106 36.000 0.00 0.00 42.23 1.63
2188 2325 5.388654 AGGAATGAGGTCAACTGTCAAATT 58.611 37.500 0.00 0.00 0.00 1.82
2190 2327 4.437682 AGGAATGAGGTCAACTGTCAAA 57.562 40.909 0.00 0.00 0.00 2.69
2193 2330 5.407407 TCTAAGGAATGAGGTCAACTGTC 57.593 43.478 0.00 0.00 0.00 3.51
2241 2384 5.068329 TGTGTGCCAAAAGTATGAATGTCAA 59.932 36.000 0.00 0.00 0.00 3.18
2262 2405 9.056005 ACAACTACATGCATATTATAAGGTGTG 57.944 33.333 0.00 0.00 32.68 3.82
2263 2406 9.273016 GACAACTACATGCATATTATAAGGTGT 57.727 33.333 0.00 5.74 36.41 4.16
2363 2506 1.478105 GGCCCATTGTGGAATCAAGAC 59.522 52.381 0.00 0.00 40.96 3.01
2369 2512 0.615544 CACCAGGCCCATTGTGGAAT 60.616 55.000 14.61 0.00 40.96 3.01
2370 2513 1.228831 CACCAGGCCCATTGTGGAA 60.229 57.895 14.61 0.00 40.96 3.53
2695 2838 5.343325 GGCATTTTCAAATTCACGAAGAGTC 59.657 40.000 0.00 0.00 0.00 3.36
2989 3134 5.129634 TGCTGACCAAGTGAAAATAACAGA 58.870 37.500 0.00 0.00 0.00 3.41
3088 3233 6.381481 TGTAATGCTAGCAGAATGGAATTG 57.619 37.500 23.89 0.00 36.07 2.32
3113 3258 5.574443 GCAAGCCAAGTCATTCAAGAAATAC 59.426 40.000 0.00 0.00 0.00 1.89
3143 3288 2.159787 GCAAGTGAGTCGCAGTTATGTG 60.160 50.000 6.44 0.00 38.07 3.21
3170 3315 7.152645 TGTACAACAAGTATCTTCCAAGTCTC 58.847 38.462 0.00 0.00 34.67 3.36
3242 3387 5.945191 TCCAATTGACAAAGATCATGCAGTA 59.055 36.000 7.12 0.00 0.00 2.74
3318 3463 7.568349 AGGTTAGAGCATTCAATCATACTTCA 58.432 34.615 0.00 0.00 0.00 3.02
3373 3519 4.109050 CCGCAGAACTCAGATTCTCTAAC 58.891 47.826 0.00 0.00 36.78 2.34
3391 3537 2.172505 AGATTTGTATGGTGGATCCGCA 59.827 45.455 26.15 13.02 39.52 5.69
3565 3711 4.144297 TGGCCAGCAATAATGATACCTTC 58.856 43.478 0.00 0.00 0.00 3.46
3667 3918 2.805099 GCTTCCTCTGTCTGAAACACAG 59.195 50.000 0.00 0.00 46.97 3.66
3698 3951 4.700213 TCAAGGCTTACTAAATGCTGGAAC 59.300 41.667 0.00 0.00 0.00 3.62
3835 4088 5.940192 CATAAGCAATGTATAAAGGGCGA 57.060 39.130 0.00 0.00 0.00 5.54
3910 4163 5.012251 GGACCTTCTTAAGAGTCTCCTTTGT 59.988 44.000 18.95 4.18 32.63 2.83
3963 4216 1.201414 TGCAGTTTCTCGTCGCTATCA 59.799 47.619 0.00 0.00 0.00 2.15
3993 4246 0.378962 TCCGCAAGTTCAACCGTTTG 59.621 50.000 0.00 0.00 0.00 2.93
4116 4369 0.320421 GCGGCTGAGGTACTGACAAA 60.320 55.000 0.00 0.00 41.55 2.83
4119 4372 1.153745 CTGCGGCTGAGGTACTGAC 60.154 63.158 0.00 0.00 41.55 3.51
4146 4399 4.337274 TCAGCAATCAAGGCATAATCAGTG 59.663 41.667 0.00 0.00 0.00 3.66
4162 4415 4.883006 ACTGGCAAAAACAAAATCAGCAAT 59.117 33.333 0.00 0.00 0.00 3.56
4330 4583 2.235650 TCATCCTGTCTCTCCAGCAAAG 59.764 50.000 0.00 0.00 0.00 2.77
4333 4586 1.006400 TCTCATCCTGTCTCTCCAGCA 59.994 52.381 0.00 0.00 0.00 4.41
4443 4699 8.288208 GCAGAAGGATAACATTATGATGAACTG 58.712 37.037 4.20 0.00 36.73 3.16
4473 4729 6.295249 TGTGTGATCAAAACAATACAGGAGA 58.705 36.000 9.47 0.00 0.00 3.71
4515 4772 6.972901 TGCACATTACGTAAATCTAGAGTCAG 59.027 38.462 12.81 0.00 0.00 3.51
4556 4813 4.584327 AATCCTACAGCAAACAAACCAC 57.416 40.909 0.00 0.00 0.00 4.16
4617 4874 6.496338 AAGTTTGACGATCAAAGGTAATCC 57.504 37.500 11.69 2.08 45.83 3.01
4664 4921 1.070758 GCTCTTGAGCCATCGGGAATA 59.929 52.381 11.24 0.00 35.59 1.75
4723 4981 1.766494 TAATCTGGTTCGGTCCGCTA 58.234 50.000 6.34 0.00 0.00 4.26
4765 5023 7.038154 TGTTCAATTTAACAGGAGTTCCTTG 57.962 36.000 1.01 0.00 46.09 3.61
4807 6258 4.507756 GGTTTTCAGTGAAAATTGTGGCTC 59.492 41.667 28.69 15.67 42.31 4.70
4809 6260 4.270808 CAGGTTTTCAGTGAAAATTGTGGC 59.729 41.667 28.69 16.87 42.31 5.01
4868 6319 3.772853 TTTGCCTGCTGTGGTCGCT 62.773 57.895 0.00 0.00 0.00 4.93
4889 6340 3.533691 GGACGCGTTCGAAGCTCG 61.534 66.667 15.53 5.06 42.10 5.03
4924 6406 2.001159 ACGTTGTTACACTTTGTGCGA 58.999 42.857 0.00 0.00 36.98 5.10
4925 6407 2.445453 ACGTTGTTACACTTTGTGCG 57.555 45.000 0.00 0.00 36.98 5.34
4960 6442 7.151308 CACACCTCCTTTGCAAATTTGTATTA 58.849 34.615 19.03 5.86 0.00 0.98
4975 6457 3.382083 AAAGAAACACCACACCTCCTT 57.618 42.857 0.00 0.00 0.00 3.36
5024 6506 2.939103 GTTTGGGTGGATCATCTCGAAG 59.061 50.000 0.00 0.00 0.00 3.79
5052 6534 8.021973 GTCTCTACTATCTTGTCGTGAAAAGAA 58.978 37.037 6.58 0.00 36.09 2.52
5060 6542 4.121317 CTCGGTCTCTACTATCTTGTCGT 58.879 47.826 0.00 0.00 0.00 4.34
5072 6554 1.379977 CTGGGTGGCTCGGTCTCTA 60.380 63.158 0.00 0.00 0.00 2.43
5125 6609 6.016276 CAGTATTATTGGGTATCCTTTGTGGC 60.016 42.308 0.00 0.00 35.26 5.01
5126 6610 6.016276 GCAGTATTATTGGGTATCCTTTGTGG 60.016 42.308 0.00 0.00 37.10 4.17
5127 6611 6.545666 TGCAGTATTATTGGGTATCCTTTGTG 59.454 38.462 0.00 0.00 0.00 3.33
5128 6612 6.546034 GTGCAGTATTATTGGGTATCCTTTGT 59.454 38.462 0.00 0.00 0.00 2.83
5129 6613 6.545666 TGTGCAGTATTATTGGGTATCCTTTG 59.454 38.462 0.00 0.00 0.00 2.77
5130 6614 6.668645 TGTGCAGTATTATTGGGTATCCTTT 58.331 36.000 0.00 0.00 0.00 3.11
5131 6615 6.260700 TGTGCAGTATTATTGGGTATCCTT 57.739 37.500 0.00 0.00 0.00 3.36
5153 6637 4.189639 AGCGGTACCTCTTAGTTTCTTG 57.810 45.455 10.90 0.00 0.00 3.02
5155 6639 5.990120 TTTAGCGGTACCTCTTAGTTTCT 57.010 39.130 10.23 0.00 0.00 2.52
5177 6661 7.462571 ACCTCTTAGTTTCTTGTGTGTTTTT 57.537 32.000 0.00 0.00 0.00 1.94
5178 6662 7.827729 ACTACCTCTTAGTTTCTTGTGTGTTTT 59.172 33.333 0.00 0.00 37.85 2.43
5179 6663 7.336396 ACTACCTCTTAGTTTCTTGTGTGTTT 58.664 34.615 0.00 0.00 37.85 2.83
5180 6664 6.885922 ACTACCTCTTAGTTTCTTGTGTGTT 58.114 36.000 0.00 0.00 37.85 3.32
5181 6665 6.481434 ACTACCTCTTAGTTTCTTGTGTGT 57.519 37.500 0.00 0.00 37.85 3.72
5258 6742 8.175716 GGTTTGAGGACTCGTTCTATTTAATTG 58.824 37.037 0.00 0.00 0.00 2.32
5265 6749 4.759782 CATGGTTTGAGGACTCGTTCTAT 58.240 43.478 0.00 0.00 0.00 1.98
5272 6756 3.350219 TTAGGCATGGTTTGAGGACTC 57.650 47.619 0.00 0.00 0.00 3.36
5331 6816 8.861086 GGATGATGTAGTTTGGAGTAATAGAGA 58.139 37.037 0.00 0.00 0.00 3.10
5332 6817 8.642432 TGGATGATGTAGTTTGGAGTAATAGAG 58.358 37.037 0.00 0.00 0.00 2.43
5333 6818 8.421784 GTGGATGATGTAGTTTGGAGTAATAGA 58.578 37.037 0.00 0.00 0.00 1.98
5334 6819 8.204160 TGTGGATGATGTAGTTTGGAGTAATAG 58.796 37.037 0.00 0.00 0.00 1.73
5335 6820 8.084985 TGTGGATGATGTAGTTTGGAGTAATA 57.915 34.615 0.00 0.00 0.00 0.98
5336 6821 6.957631 TGTGGATGATGTAGTTTGGAGTAAT 58.042 36.000 0.00 0.00 0.00 1.89
5337 6822 6.367374 TGTGGATGATGTAGTTTGGAGTAA 57.633 37.500 0.00 0.00 0.00 2.24
5338 6823 6.013725 AGTTGTGGATGATGTAGTTTGGAGTA 60.014 38.462 0.00 0.00 0.00 2.59
5339 6824 4.908601 TGTGGATGATGTAGTTTGGAGT 57.091 40.909 0.00 0.00 0.00 3.85
5340 6825 5.248640 AGTTGTGGATGATGTAGTTTGGAG 58.751 41.667 0.00 0.00 0.00 3.86
5341 6826 5.241403 AGTTGTGGATGATGTAGTTTGGA 57.759 39.130 0.00 0.00 0.00 3.53
5342 6827 5.707298 AGAAGTTGTGGATGATGTAGTTTGG 59.293 40.000 0.00 0.00 0.00 3.28
5343 6828 6.808008 AGAAGTTGTGGATGATGTAGTTTG 57.192 37.500 0.00 0.00 0.00 2.93
5344 6829 8.321353 TCATAGAAGTTGTGGATGATGTAGTTT 58.679 33.333 0.00 0.00 0.00 2.66
5345 6830 7.851228 TCATAGAAGTTGTGGATGATGTAGTT 58.149 34.615 0.00 0.00 0.00 2.24
5346 6831 7.423844 TCATAGAAGTTGTGGATGATGTAGT 57.576 36.000 0.00 0.00 0.00 2.73
5349 6834 8.654094 TGATATCATAGAAGTTGTGGATGATGT 58.346 33.333 0.00 2.83 37.70 3.06
5350 6835 8.933807 GTGATATCATAGAAGTTGTGGATGATG 58.066 37.037 9.02 0.00 37.70 3.07
5351 6836 8.654094 TGTGATATCATAGAAGTTGTGGATGAT 58.346 33.333 9.02 4.29 39.80 2.45
5352 6837 7.928167 GTGTGATATCATAGAAGTTGTGGATGA 59.072 37.037 9.02 0.00 0.00 2.92
5353 6838 7.930325 AGTGTGATATCATAGAAGTTGTGGATG 59.070 37.037 9.02 0.00 0.00 3.51
5354 6839 8.027524 AGTGTGATATCATAGAAGTTGTGGAT 57.972 34.615 9.02 0.00 0.00 3.41
5355 6840 7.423844 AGTGTGATATCATAGAAGTTGTGGA 57.576 36.000 9.02 0.00 0.00 4.02
5356 6841 7.765819 TGAAGTGTGATATCATAGAAGTTGTGG 59.234 37.037 9.02 0.00 0.00 4.17
5357 6842 8.598924 GTGAAGTGTGATATCATAGAAGTTGTG 58.401 37.037 9.02 0.00 0.00 3.33
5358 6843 8.314021 TGTGAAGTGTGATATCATAGAAGTTGT 58.686 33.333 9.02 0.00 0.00 3.32
5359 6844 8.707938 TGTGAAGTGTGATATCATAGAAGTTG 57.292 34.615 9.02 0.00 0.00 3.16
5360 6845 9.376075 CTTGTGAAGTGTGATATCATAGAAGTT 57.624 33.333 9.02 4.82 0.00 2.66
5361 6846 7.493971 GCTTGTGAAGTGTGATATCATAGAAGT 59.506 37.037 9.02 0.00 0.00 3.01
5362 6847 7.710044 AGCTTGTGAAGTGTGATATCATAGAAG 59.290 37.037 9.02 7.01 0.00 2.85
5363 6848 7.559486 AGCTTGTGAAGTGTGATATCATAGAA 58.441 34.615 9.02 0.00 0.00 2.10
5364 6849 7.117285 AGCTTGTGAAGTGTGATATCATAGA 57.883 36.000 9.02 0.00 0.00 1.98
5365 6850 6.423302 GGAGCTTGTGAAGTGTGATATCATAG 59.577 42.308 9.02 0.00 0.00 2.23
5366 6851 6.283694 GGAGCTTGTGAAGTGTGATATCATA 58.716 40.000 9.02 2.88 0.00 2.15
5367 6852 5.121811 GGAGCTTGTGAAGTGTGATATCAT 58.878 41.667 9.02 0.00 0.00 2.45
5368 6853 4.507710 GGAGCTTGTGAAGTGTGATATCA 58.492 43.478 0.00 0.00 0.00 2.15
5369 6854 3.873952 GGGAGCTTGTGAAGTGTGATATC 59.126 47.826 0.00 0.00 0.00 1.63
5370 6855 3.264193 TGGGAGCTTGTGAAGTGTGATAT 59.736 43.478 0.00 0.00 0.00 1.63
5371 6856 2.637382 TGGGAGCTTGTGAAGTGTGATA 59.363 45.455 0.00 0.00 0.00 2.15
5372 6857 1.421268 TGGGAGCTTGTGAAGTGTGAT 59.579 47.619 0.00 0.00 0.00 3.06
5373 6858 0.836606 TGGGAGCTTGTGAAGTGTGA 59.163 50.000 0.00 0.00 0.00 3.58
5374 6859 1.233019 CTGGGAGCTTGTGAAGTGTG 58.767 55.000 0.00 0.00 0.00 3.82
5375 6860 0.536006 GCTGGGAGCTTGTGAAGTGT 60.536 55.000 0.00 0.00 38.45 3.55
5376 6861 2.251600 GCTGGGAGCTTGTGAAGTG 58.748 57.895 0.00 0.00 38.45 3.16
5377 6862 4.809070 GCTGGGAGCTTGTGAAGT 57.191 55.556 0.00 0.00 38.45 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.