AutoCloner

Multiple sequence alignment - TraesCS2B01G206600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G206600	chr2B	100.000	4030	0	0	1	4030	185768889	185772918	0.000000e+00	7443.0
1	TraesCS2B01G206600	chr2B	97.138	1223	31	4	359	1580	186376125	186374906	0.000000e+00	2061.0
2	TraesCS2B01G206600	chr2B	90.672	922	52	12	2304	3199	186317536	186316623	0.000000e+00	1195.0
3	TraesCS2B01G206600	chr2B	96.329	681	23	1	3255	3935	186315264	186314586	0.000000e+00	1118.0
4	TraesCS2B01G206600	chr2B	81.644	1302	187	26	893	2161	188460745	188462027	0.000000e+00	1033.0
5	TraesCS2B01G206600	chr2B	96.579	497	16	1	1820	2316	186363520	186363025	0.000000e+00	822.0
6	TraesCS2B01G206600	chr2B	96.286	377	8	1	1	377	186376651	186376281	8.600000e-172	614.0
7	TraesCS2B01G206600	chr2B	93.085	188	10	3	1636	1820	186371039	186370852	5.970000e-69	272.0
8	TraesCS2B01G206600	chr2B	100.000	47	0	0	4633	4679	185773521	185773567	2.320000e-13	87.9
9	TraesCS2B01G206600	chr2B	91.935	62	4	1	3188	3248	186316602	186316541	8.340000e-13	86.1
10	TraesCS2B01G206600	chr2D	93.879	2173	93	14	461	2623	131764882	131767024	0.000000e+00	3240.0
11	TraesCS2B01G206600	chr2D	93.159	1111	64	7	2884	3990	131773257	131774359	0.000000e+00	1620.0
12	TraesCS2B01G206600	chr2D	83.094	1254	182	21	923	2161	132695048	132696286	0.000000e+00	1114.0
13	TraesCS2B01G206600	chr2D	83.616	1178	162	23	985	2148	132293189	132294349	0.000000e+00	1077.0
14	TraesCS2B01G206600	chr2D	95.966	471	12	2	1	471	131764227	131764690	0.000000e+00	758.0
15	TraesCS2B01G206600	chr2A	92.702	1795	95	18	867	2652	139509058	139510825	0.000000e+00	2556.0
16	TraesCS2B01G206600	chr2A	82.988	1158	169	23	1018	2160	140358057	140359201	0.000000e+00	1022.0
17	TraesCS2B01G206600	chr7D	85.410	1926	222	35	962	2867	89944998	89943112	0.000000e+00	1945.0
18	TraesCS2B01G206600	chr7D	84.439	437	55	8	2883	3311	89942815	89942384	7.240000e-113	418.0
19	TraesCS2B01G206600	chr7A	84.879	1197	142	24	1690	2867	91507790	91506614	0.000000e+00	1171.0
20	TraesCS2B01G206600	chr7A	89.706	68	7	0	1600	1667	91507790	91507857	2.320000e-13	87.9
21	TraesCS2B01G206600	chr7B	84.767	1221	125	25	1698	2867	41046993	41045783	0.000000e+00	1168.0
22	TraesCS2B01G206600	chr7B	85.314	749	96	11	966	1713	41054509	41053774	0.000000e+00	761.0
23	TraesCS2B01G206600	chr7B	85.824	649	71	11	3345	3975	41044987	41044342	0.000000e+00	669.0
24	TraesCS2B01G206600	chr7B	83.295	431	54	8	2883	3309	41045483	41045067	9.500000e-102	381.0
25	TraesCS2B01G206600	chr7B	75.940	133	32	0	1508	1640	748342607	748342475	8.400000e-08	69.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G206600	chr2B	185768889	185773567	4678	False	3765.450000	7443	100.000000	1	4679	2	chr2B.!!$F2	4678
1	TraesCS2B01G206600	chr2B	188460745	188462027	1282	False	1033.000000	1033	81.644000	893	2161	1	chr2B.!!$F1	1268
2	TraesCS2B01G206600	chr2B	186370852	186376651	5799	True	982.333333	2061	95.503000	1	1820	3	chr2B.!!$R3	1819
3	TraesCS2B01G206600	chr2B	186314586	186317536	2950	True	799.700000	1195	92.978667	2304	3935	3	chr2B.!!$R2	1631
4	TraesCS2B01G206600	chr2D	131764227	131767024	2797	False	1999.000000	3240	94.922500	1	2623	2	chr2D.!!$F4	2622
5	TraesCS2B01G206600	chr2D	131773257	131774359	1102	False	1620.000000	1620	93.159000	2884	3990	1	chr2D.!!$F1	1106
6	TraesCS2B01G206600	chr2D	132695048	132696286	1238	False	1114.000000	1114	83.094000	923	2161	1	chr2D.!!$F3	1238
7	TraesCS2B01G206600	chr2D	132293189	132294349	1160	False	1077.000000	1077	83.616000	985	2148	1	chr2D.!!$F2	1163
8	TraesCS2B01G206600	chr2A	139509058	139510825	1767	False	2556.000000	2556	92.702000	867	2652	1	chr2A.!!$F1	1785
9	TraesCS2B01G206600	chr2A	140358057	140359201	1144	False	1022.000000	1022	82.988000	1018	2160	1	chr2A.!!$F2	1142
10	TraesCS2B01G206600	chr7D	89942384	89944998	2614	True	1181.500000	1945	84.924500	962	3311	2	chr7D.!!$R1	2349
11	TraesCS2B01G206600	chr7A	91506614	91507790	1176	True	1171.000000	1171	84.879000	1690	2867	1	chr7A.!!$R1	1177
12	TraesCS2B01G206600	chr7B	41053774	41054509	735	True	761.000000	761	85.314000	966	1713	1	chr7B.!!$R1	747
13	TraesCS2B01G206600	chr7B	41044342	41046993	2651	True	739.333333	1168	84.628667	1698	3975	3	chr7B.!!$R3	2277

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
593	969	0.178975	ATCCGGCAACAAAACCTCCA	60.179	50.000	0.00	0.00	3.86	F
696	1072	1.281577	TGTCAATCATGGTGCCTGCTA	59.718	47.619	0.00	0.00	3.49	F
739	1115	2.155665	GCGCGTGCAACTAGGTTTA	58.844	52.632	17.66	42.15	2.01	F
1657	5879	2.549754	ACAGCAGCAATTCGGTATATGC	59.450	45.455	0.00	39.06	3.14	F
2715	7003	0.318441	TTCTGTTGAGGAGACCTGCG	59.682	55.000	0.00	31.76	5.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1870	6100	1.879575	TCCCTCTCCCACATTTCGAT	58.120	50.0	0.00	3.59	R
2061	6305	5.335897	GCCAAGATTTCTGAACTGCATTGTA	60.336	40.0	0.00	2.41	R
2715	7003	1.710013	TACACTTAGACTTGCAGCGC	58.290	50.0	0.00	5.92	R
3162	7765	0.533491	CTGGTATGGTTCGGGTCGAA	59.467	55.0	43.75	3.71	R
4009	9981	0.179227	CACACACACACACACACACG	60.179	55.0	0.00	4.49	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
83	84	8.190122	CAGAATGTGCTTTAGCCAAATACAATA	58.810	33.333	0.00	0.00	41.18	1.90
91	92	9.801873	GCTTTAGCCAAATACAATAGAAATTGA	57.198	29.630	5.18	0.00	39.00	2.57
129	130	4.628766	GGCTGATTTTTCAAAGCTGATTCC	59.371	41.667	0.00	0.00	35.93	3.01
448	623	2.573920	GGCCTTATCCGCCACAAAA	58.426	52.632	0.00	0.00	46.27	2.44
519	895	1.227089	ACGCCTCTGCATCGATGTC	60.227	57.895	25.47	17.83	37.32	3.06
525	901	0.179103	TCTGCATCGATGTCGTGCAT	60.179	50.000	25.47	0.00	46.43	3.96
593	969	0.178975	ATCCGGCAACAAAACCTCCA	60.179	50.000	0.00	0.00	0.00	3.86
594	970	0.178975	TCCGGCAACAAAACCTCCAT	60.179	50.000	0.00	0.00	0.00	3.41
605	981	7.431960	GCAACAAAACCTCCATTTTCATTTTTC	59.568	33.333	0.00	0.00	29.17	2.29
696	1072	1.281577	TGTCAATCATGGTGCCTGCTA	59.718	47.619	0.00	0.00	0.00	3.49
704	1080	3.117776	TCATGGTGCCTGCTATGAGAAAT	60.118	43.478	0.00	0.00	0.00	2.17
739	1115	2.155665	GCGCGTGCAACTAGGTTTA	58.844	52.632	17.66	0.00	42.15	2.01
855	1231	8.032451	CCAAAGTAAAACACTGGAGAAGAAAAA	58.968	33.333	0.00	0.00	37.63	1.94
1236	1617	3.461773	CTCGGCCTCGTCATGGGT	61.462	66.667	0.00	0.00	37.69	4.51
1657	5879	2.549754	ACAGCAGCAATTCGGTATATGC	59.450	45.455	0.00	0.00	39.06	3.14
1751	5978	9.679661	TGGCATACTCAAGTTTGATTTAGATAA	57.320	29.630	4.99	0.00	36.46	1.75
2061	6305	3.377485	GTGTCTGCATCATTCAGCTTGAT	59.623	43.478	0.00	0.00	34.15	2.57
2274	6547	2.802816	CTGTACTCTGTTGTGGCACTTC	59.197	50.000	19.83	11.90	0.00	3.01
2366	6639	6.038161	CCATTACAGAATCTGGCAAAATCGTA	59.962	38.462	15.38	0.00	35.51	3.43
2372	6645	7.872483	ACAGAATCTGGCAAAATCGTAAAAATT	59.128	29.630	15.38	0.00	35.51	1.82
2482	6763	4.506758	GCATATGGCAGTTGGAAATTTGT	58.493	39.130	4.56	0.00	43.97	2.83
2628	6915	8.907885	TCCGATGATATAATGTTCATCTCTAGG	58.092	37.037	10.74	6.15	43.88	3.02
2715	7003	0.318441	TTCTGTTGAGGAGACCTGCG	59.682	55.000	0.00	0.00	31.76	5.18
2716	7004	1.739562	CTGTTGAGGAGACCTGCGC	60.740	63.158	0.00	0.00	31.76	6.09
2717	7005	2.811317	GTTGAGGAGACCTGCGCG	60.811	66.667	0.00	0.00	31.76	6.86
2718	7006	4.742201	TTGAGGAGACCTGCGCGC	62.742	66.667	27.26	27.26	31.76	6.86
2819	7119	8.514594	CAATCTGGTGTGTTTACTGTCATTATT	58.485	33.333	0.00	0.00	0.00	1.40
2836	7137	8.896744	TGTCATTATTCAAAGAGGCTCATTTAG	58.103	33.333	18.26	0.21	0.00	1.85
2846	7147	9.912634	CAAAGAGGCTCATTTAGTTTTTATTGA	57.087	29.630	18.26	0.00	0.00	2.57
2959	7553	1.373497	CACGGAGGTCTGAGTGCAC	60.373	63.158	9.40	9.40	0.00	4.57
2960	7554	1.531840	ACGGAGGTCTGAGTGCACT	60.532	57.895	21.88	21.88	0.00	4.40
2979	7574	5.655488	GCACTCTCTTGCATCTTCTTAGTA	58.345	41.667	0.00	0.00	42.49	1.82
3101	7698	1.685517	CAGATCTCTGGCGAAGGATGA	59.314	52.381	0.00	0.00	40.20	2.92
3102	7699	2.102084	CAGATCTCTGGCGAAGGATGAA	59.898	50.000	0.00	0.00	40.20	2.57
3129	7726	1.304464	GGTTCCTGCTTCAAGGGGG	60.304	63.158	0.00	0.00	37.96	5.40
3162	7765	3.437795	GACAATGCCGCAGCTGCT	61.438	61.111	34.22	15.66	40.80	4.24
3201	7843	4.520492	CCAGGAGGTAAAATACATGCATCC	59.480	45.833	0.00	0.00	33.09	3.51
3267	9179	7.280205	GGGACTTGGGTATATCAATTAATAGCG	59.720	40.741	0.00	0.00	0.00	4.26
3297	9209	5.441500	TGGTTTTCCATTAGCAATATCCGA	58.558	37.500	0.00	0.00	46.22	4.55
3343	9299	0.447801	GGACATTGCAGCAACCGTAG	59.552	55.000	10.85	1.01	0.00	3.51
3456	9412	1.232621	GCCGGGTACTGACACAAACC	61.233	60.000	2.18	0.00	36.31	3.27
3721	9677	0.395686	ATCCATGGCCTGATGACTCG	59.604	55.000	6.96	0.00	0.00	4.18
3976	9948	0.865111	TCGGTCACTTGATTGTTGCG	59.135	50.000	0.00	0.00	0.00	4.85
3977	9949	0.586319	CGGTCACTTGATTGTTGCGT	59.414	50.000	0.00	0.00	0.00	5.24
3978	9950	1.660052	CGGTCACTTGATTGTTGCGTG	60.660	52.381	0.00	0.00	0.00	5.34
3979	9951	1.333619	GGTCACTTGATTGTTGCGTGT	59.666	47.619	0.00	0.00	0.00	4.49
3980	9952	2.375110	GTCACTTGATTGTTGCGTGTG	58.625	47.619	0.00	0.00	0.00	3.82
3981	9953	1.122849	CACTTGATTGTTGCGTGTGC	58.877	50.000	0.00	0.00	43.20	4.57
4021	9993	3.860125	GCGTGCGTGTGTGTGTGT	61.860	61.111	0.00	0.00	0.00	3.72
4022	9994	2.021243	CGTGCGTGTGTGTGTGTG	59.979	61.111	0.00	0.00	0.00	3.82
4023	9995	2.735677	CGTGCGTGTGTGTGTGTGT	61.736	57.895	0.00	0.00	0.00	3.72
4024	9996	1.225991	GTGCGTGTGTGTGTGTGTG	60.226	57.895	0.00	0.00	0.00	3.82
4025	9997	1.669437	TGCGTGTGTGTGTGTGTGT	60.669	52.632	0.00	0.00	0.00	3.72
4026	9998	1.225991	GCGTGTGTGTGTGTGTGTG	60.226	57.895	0.00	0.00	0.00	3.82
4027	9999	1.906994	GCGTGTGTGTGTGTGTGTGT	61.907	55.000	0.00	0.00	0.00	3.72
4028	10000	0.179227	CGTGTGTGTGTGTGTGTGTG	60.179	55.000	0.00	0.00	0.00	3.82
4029	10001	0.871722	GTGTGTGTGTGTGTGTGTGT	59.128	50.000	0.00	0.00	0.00	3.72
4656	10628	6.924629	CTTTGTTAATTCAAAGCTGAGCTC	57.075	37.500	7.72	6.82	44.57	4.09
4657	10629	6.639632	TTTGTTAATTCAAAGCTGAGCTCT	57.360	33.333	16.19	0.00	38.25	4.09
4658	10630	6.639632	TTGTTAATTCAAAGCTGAGCTCTT	57.360	33.333	16.19	1.47	38.25	2.85
4659	10631	6.639632	TGTTAATTCAAAGCTGAGCTCTTT	57.360	33.333	16.19	4.36	38.25	2.52
4660	10632	7.042797	TGTTAATTCAAAGCTGAGCTCTTTT	57.957	32.000	16.19	10.05	38.25	2.27
4661	10633	7.491682	TGTTAATTCAAAGCTGAGCTCTTTTT	58.508	30.769	16.19	9.70	38.25	1.94
4662	10634	7.436080	TGTTAATTCAAAGCTGAGCTCTTTTTG	59.564	33.333	21.63	21.63	38.25	2.44
4663	10635	5.779529	ATTCAAAGCTGAGCTCTTTTTGA	57.220	34.783	24.12	24.12	38.25	2.69
4664	10636	4.825546	TCAAAGCTGAGCTCTTTTTGAG	57.174	40.909	24.12	12.35	45.33	3.02
4665	10637	4.202441	TCAAAGCTGAGCTCTTTTTGAGT	58.798	39.130	24.12	0.00	44.41	3.41
4666	10638	4.274459	TCAAAGCTGAGCTCTTTTTGAGTC	59.726	41.667	24.12	8.72	44.41	3.36
4667	10639	3.767902	AGCTGAGCTCTTTTTGAGTCT	57.232	42.857	16.19	2.00	44.41	3.24
4668	10640	4.084011	AGCTGAGCTCTTTTTGAGTCTT	57.916	40.909	16.19	0.00	44.41	3.01
4669	10641	4.064388	AGCTGAGCTCTTTTTGAGTCTTC	58.936	43.478	16.19	0.00	44.41	2.87
4670	10642	3.120718	GCTGAGCTCTTTTTGAGTCTTCG	60.121	47.826	16.19	0.00	44.41	3.79
4671	10643	3.393800	TGAGCTCTTTTTGAGTCTTCGG	58.606	45.455	16.19	0.00	44.41	4.30
4672	10644	3.181465	TGAGCTCTTTTTGAGTCTTCGGT	60.181	43.478	16.19	0.00	44.41	4.69
4673	10645	3.394719	AGCTCTTTTTGAGTCTTCGGTC	58.605	45.455	0.00	0.00	44.41	4.79
4674	10646	3.070302	AGCTCTTTTTGAGTCTTCGGTCT	59.930	43.478	0.00	0.00	44.41	3.85
4675	10647	3.810386	GCTCTTTTTGAGTCTTCGGTCTT	59.190	43.478	0.00	0.00	44.41	3.01
4676	10648	4.989168	GCTCTTTTTGAGTCTTCGGTCTTA	59.011	41.667	0.00	0.00	44.41	2.10
4677	10649	5.465724	GCTCTTTTTGAGTCTTCGGTCTTAA	59.534	40.000	0.00	0.00	44.41	1.85
4678	10650	6.018180	GCTCTTTTTGAGTCTTCGGTCTTAAA	60.018	38.462	0.00	0.00	44.41	1.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
91	92	9.252962	GAAAAATCAGCCAATATTTGATTCGAT	57.747	29.630	12.19	4.68	39.82	3.59
103	104	5.217978	TCAGCTTTGAAAAATCAGCCAAT	57.782	34.783	0.00	0.00	32.25	3.16
305	306	4.464069	GCATAGGCAATCTAGGAGTAGG	57.536	50.000	0.00	0.00	40.72	3.18
519	895	8.955702	TTCATACAACTGAATGTGCATGCACG	62.956	42.308	37.76	27.58	38.64	5.34
525	901	9.341078	ACATATATTCATACAACTGAATGTGCA	57.659	29.630	9.05	0.00	43.80	4.57
593	969	8.090831	GCTGACTTCCTAAGGAAAAATGAAAAT	58.909	33.333	0.00	0.00	41.54	1.82
594	970	7.287696	AGCTGACTTCCTAAGGAAAAATGAAAA	59.712	33.333	0.00	0.00	41.54	2.29
605	981	2.479566	TTGCAGCTGACTTCCTAAGG	57.520	50.000	20.43	0.00	0.00	2.69
646	1022	6.821160	GGTCTTTCTGGAAAAGAGAGAATAGG	59.179	42.308	0.65	0.00	45.17	2.57
696	1072	6.148976	CACTGCCGATCATGAATATTTCTCAT	59.851	38.462	0.00	0.00	33.73	2.90
704	1080	1.501169	CGCACTGCCGATCATGAATA	58.499	50.000	0.00	0.00	0.00	1.75
735	1111	4.679197	TCACGCACTTTGATGCATTTAAAC	59.321	37.500	0.00	0.00	46.47	2.01
739	1115	3.504863	GATCACGCACTTTGATGCATTT	58.495	40.909	0.00	0.00	46.47	2.32
860	1236	8.753497	TGAGATGTCTAATTCTAGTGCTCTTA	57.247	34.615	0.00	0.00	0.00	2.10
955	1335	1.482954	GGGGTGTGGAGTAGTAGACC	58.517	60.000	0.00	0.00	0.00	3.85
1657	5879	4.803426	GGGACGGCTCAGCTCACG	62.803	72.222	0.00	0.00	0.00	4.35
1751	5978	4.827835	TCTCGATGTTAACTAGGCTATGCT	59.172	41.667	7.22	0.00	0.00	3.79
1870	6100	1.879575	TCCCTCTCCCACATTTCGAT	58.120	50.000	0.00	0.00	0.00	3.59
2061	6305	5.335897	GCCAAGATTTCTGAACTGCATTGTA	60.336	40.000	0.00	0.00	0.00	2.41
2274	6547	8.180706	TCCTCTCTCTGAAGATGAGAATATTG	57.819	38.462	0.00	1.77	39.69	1.90
2628	6915	9.046296	ACGGATGTGTGATTAATAGAAAGATTC	57.954	33.333	0.00	0.00	0.00	2.52
2688	6976	6.019748	AGGTCTCCTCAACAGAAGATAAAGA	58.980	40.000	0.00	0.00	0.00	2.52
2715	7003	1.710013	TACACTTAGACTTGCAGCGC	58.290	50.000	0.00	0.00	0.00	5.92
2716	7004	2.092838	GCTTACACTTAGACTTGCAGCG	59.907	50.000	0.00	0.00	0.00	5.18
2717	7005	2.416893	GGCTTACACTTAGACTTGCAGC	59.583	50.000	0.00	0.00	0.00	5.25
2718	7006	3.931578	AGGCTTACACTTAGACTTGCAG	58.068	45.455	0.00	0.00	0.00	4.41
2764	7053	6.409524	TTGAAAAGGTCAGCATCAGAAATT	57.590	33.333	0.00	0.00	37.61	1.82
2765	7054	6.600882	ATTGAAAAGGTCAGCATCAGAAAT	57.399	33.333	0.00	0.00	37.61	2.17
2773	7062	4.998671	TGAACAATTGAAAAGGTCAGCA	57.001	36.364	13.59	0.00	37.61	4.41
2819	7119	9.912634	CAATAAAAACTAAATGAGCCTCTTTGA	57.087	29.630	0.00	0.00	0.00	2.69
2895	7489	7.735917	AGGTGATAAGCTTTGTGCATATACTA	58.264	34.615	3.20	0.00	45.94	1.82
2896	7490	6.595682	AGGTGATAAGCTTTGTGCATATACT	58.404	36.000	3.20	0.00	45.94	2.12
2897	7491	6.867662	AGGTGATAAGCTTTGTGCATATAC	57.132	37.500	3.20	0.00	45.94	1.47
2904	7498	8.268850	AGTGTTAATAGGTGATAAGCTTTGTG	57.731	34.615	3.20	0.00	0.00	3.33
2924	7518	2.223829	CCGTGTCTTGAGTCTGAGTGTT	60.224	50.000	0.00	0.00	0.00	3.32
2959	7553	6.267471	AGGGATACTAAGAAGATGCAAGAGAG	59.733	42.308	0.00	0.00	0.00	3.20
2960	7554	6.139671	AGGGATACTAAGAAGATGCAAGAGA	58.860	40.000	0.00	0.00	0.00	3.10
2979	7574	5.948758	GGAAAAAGAAGTGATGAGAAGGGAT	59.051	40.000	0.00	0.00	0.00	3.85
3101	7698	2.226962	AGCAGGAACCATGATGCTTT	57.773	45.000	0.00	0.00	46.46	3.51
3102	7699	3.994165	AGCAGGAACCATGATGCTT	57.006	47.368	0.00	0.00	46.46	3.91
3162	7765	0.533491	CTGGTATGGTTCGGGTCGAA	59.467	55.000	0.00	0.00	43.75	3.71
3267	9179	5.146010	TGCTAATGGAAAACCACAAATCC	57.854	39.130	0.00	0.00	0.00	3.01
3297	9209	7.450634	CCAATCCCAGATGATCATTCTACATTT	59.549	37.037	10.14	0.00	0.00	2.32
3343	9299	8.470002	AGAAGAATAAAGGATTAAACCACATGC	58.530	33.333	4.40	0.00	0.00	4.06
3456	9412	4.287720	TCTTGAATATCACGTCGATTCGG	58.712	43.478	6.18	0.00	35.39	4.30
3541	9497	4.457257	GCAGTCTGCTTTACTTTCAGGAAT	59.543	41.667	17.89	0.00	40.96	3.01
3904	9875	6.644592	CCCGCAAGAAGATCAAAATAAAAACA	59.355	34.615	0.00	0.00	43.02	2.83
4003	9975	4.918060	CACACACACACGCACGCG	62.918	66.667	10.36	10.36	46.03	6.01
4004	9976	3.860125	ACACACACACACGCACGC	61.860	61.111	0.00	0.00	0.00	5.34
4005	9977	2.021243	CACACACACACACGCACG	59.979	61.111	0.00	0.00	0.00	5.34
4006	9978	1.225991	CACACACACACACACGCAC	60.226	57.895	0.00	0.00	0.00	5.34
4007	9979	1.669437	ACACACACACACACACGCA	60.669	52.632	0.00	0.00	0.00	5.24
4008	9980	1.225991	CACACACACACACACACGC	60.226	57.895	0.00	0.00	0.00	5.34
4009	9981	0.179227	CACACACACACACACACACG	60.179	55.000	0.00	0.00	0.00	4.49
4010	9982	0.871722	ACACACACACACACACACAC	59.128	50.000	0.00	0.00	0.00	3.82
4634	10606	6.639632	AGAGCTCAGCTTTGAATTAACAAA	57.360	33.333	17.77	0.00	39.88	2.83
4635	10607	6.639632	AAGAGCTCAGCTTTGAATTAACAA	57.360	33.333	17.77	0.00	39.88	2.83
4636	10608	6.639632	AAAGAGCTCAGCTTTGAATTAACA	57.360	33.333	17.77	0.00	39.88	2.41
4637	10609	7.649306	TCAAAAAGAGCTCAGCTTTGAATTAAC	59.351	33.333	24.19	0.00	39.88	2.01
4638	10610	7.715657	TCAAAAAGAGCTCAGCTTTGAATTAA	58.284	30.769	24.19	10.35	39.88	1.40
4639	10611	7.275888	TCAAAAAGAGCTCAGCTTTGAATTA	57.724	32.000	24.19	10.60	39.88	1.40
4640	10612	6.152932	TCAAAAAGAGCTCAGCTTTGAATT	57.847	33.333	24.19	4.78	39.88	2.17
4641	10613	5.770417	CTCAAAAAGAGCTCAGCTTTGAAT	58.230	37.500	25.33	6.76	39.88	2.57
4642	10614	5.179045	CTCAAAAAGAGCTCAGCTTTGAA	57.821	39.130	25.33	15.86	39.88	2.69
4643	10615	4.825546	CTCAAAAAGAGCTCAGCTTTGA	57.174	40.909	24.49	24.49	39.88	2.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.