Multiple sequence alignment - TraesCS2B01G206500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G206500 chr2B 100.000 3460 0 0 1 3460 185763547 185760088 0.000000e+00 6390.0
1 TraesCS2B01G206500 chr2B 95.662 1291 39 9 1187 2469 186403209 186404490 0.000000e+00 2058.0
2 TraesCS2B01G206500 chr2B 94.300 807 40 4 1 807 186402269 186403069 0.000000e+00 1230.0
3 TraesCS2B01G206500 chr2B 82.006 1256 181 32 1241 2469 545152686 545153923 0.000000e+00 1026.0
4 TraesCS2B01G206500 chr2B 80.564 638 88 11 1 612 545151385 545152012 3.150000e-125 459.0
5 TraesCS2B01G206500 chr2B 96.859 191 6 0 1001 1191 186403065 186403255 1.550000e-83 320.0
6 TraesCS2B01G206500 chr2B 86.792 159 21 0 765 923 545152045 545152203 9.870000e-41 178.0
7 TraesCS2B01G206500 chr2B 94.737 76 3 1 2649 2724 186404525 186404599 2.180000e-22 117.0
8 TraesCS2B01G206500 chr2B 100.000 50 0 0 1145 1194 185762361 185762312 3.680000e-15 93.5
9 TraesCS2B01G206500 chr2B 100.000 50 0 0 1187 1236 185762403 185762354 3.680000e-15 93.5
10 TraesCS2B01G206500 chr2A 96.787 1276 36 3 1187 2461 138527744 138526473 0.000000e+00 2124.0
11 TraesCS2B01G206500 chr2A 96.337 1010 34 1 185 1194 138528701 138527695 0.000000e+00 1657.0
12 TraesCS2B01G206500 chr2A 81.992 1255 182 32 1241 2469 610176926 610178162 0.000000e+00 1026.0
13 TraesCS2B01G206500 chr2A 81.833 1255 184 31 1241 2469 607512970 607514206 0.000000e+00 1014.0
14 TraesCS2B01G206500 chr2A 90.909 770 43 13 2649 3399 138525411 138524650 0.000000e+00 1009.0
15 TraesCS2B01G206500 chr2A 78.431 969 141 24 1 941 610175620 610176548 1.390000e-158 569.0
16 TraesCS2B01G206500 chr2A 92.366 131 10 0 3305 3435 622697328 622697458 1.640000e-43 187.0
17 TraesCS2B01G206500 chr2A 88.596 114 9 2 3106 3215 138517258 138517145 6.020000e-28 135.0
18 TraesCS2B01G206500 chr2A 88.596 114 9 2 3106 3215 138526122 138526009 6.020000e-28 135.0
19 TraesCS2B01G206500 chr2A 83.168 101 4 2 3216 3316 138525806 138525719 2.860000e-11 80.5
20 TraesCS2B01G206500 chr2A 92.593 54 3 1 3263 3316 138516908 138516856 3.700000e-10 76.8
21 TraesCS2B01G206500 chr2D 95.900 1317 41 8 1187 2491 131642991 131641676 0.000000e+00 2121.0
22 TraesCS2B01G206500 chr2D 95.114 614 30 0 248 861 131643807 131643194 0.000000e+00 968.0
23 TraesCS2B01G206500 chr2D 83.239 710 96 12 1775 2469 462240896 462241597 6.300000e-177 630.0
24 TraesCS2B01G206500 chr2D 97.159 352 10 0 843 1194 131643293 131642942 2.300000e-166 595.0
25 TraesCS2B01G206500 chr2D 82.669 502 66 15 1241 1733 462240284 462240773 3.190000e-115 425.0
26 TraesCS2B01G206500 chr2D 81.505 319 47 5 487 805 462229216 462229522 5.730000e-63 252.0
27 TraesCS2B01G206500 chr2D 86.192 239 11 5 3085 3316 131641368 131641145 4.460000e-59 239.0
28 TraesCS2B01G206500 chr2D 88.608 79 9 0 764 842 462238125 462238203 2.840000e-16 97.1
29 TraesCS2B01G206500 chr1B 83.140 1032 156 13 1450 2469 275672417 275673442 0.000000e+00 926.0
30 TraesCS2B01G206500 chr1B 82.977 1028 156 12 1450 2465 275458841 275459861 0.000000e+00 911.0
31 TraesCS2B01G206500 chr1B 82.865 1033 156 14 1450 2469 275553796 275554820 0.000000e+00 907.0
32 TraesCS2B01G206500 chr1A 82.370 1038 160 17 1449 2472 246128832 246127804 0.000000e+00 881.0
33 TraesCS2B01G206500 chr3B 97.500 120 3 0 3313 3432 428703659 428703778 4.530000e-49 206.0
34 TraesCS2B01G206500 chr6A 96.694 121 4 0 3314 3434 97802688 97802568 5.860000e-48 202.0
35 TraesCS2B01G206500 chr6A 95.902 122 5 0 3313 3434 48520039 48520160 7.570000e-47 198.0
36 TraesCS2B01G206500 chr6A 95.041 121 6 0 3314 3434 5939077 5939197 1.270000e-44 191.0
37 TraesCS2B01G206500 chr7B 95.041 121 6 0 3314 3434 462732048 462732168 1.270000e-44 191.0
38 TraesCS2B01G206500 chr5D 95.041 121 6 0 3314 3434 384072358 384072238 1.270000e-44 191.0
39 TraesCS2B01G206500 chr7A 92.424 132 9 1 3303 3434 323448422 323448552 1.640000e-43 187.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G206500 chr2B 185760088 185763547 3459 True 2192.333333 6390 100.000000 1 3460 3 chr2B.!!$R1 3459
1 TraesCS2B01G206500 chr2B 186402269 186404599 2330 False 931.250000 2058 95.389500 1 2724 4 chr2B.!!$F1 2723
2 TraesCS2B01G206500 chr2B 545151385 545153923 2538 False 554.333333 1026 83.120667 1 2469 3 chr2B.!!$F2 2468
3 TraesCS2B01G206500 chr2A 607512970 607514206 1236 False 1014.000000 1014 81.833000 1241 2469 1 chr2A.!!$F1 1228
4 TraesCS2B01G206500 chr2A 138524650 138528701 4051 True 1001.100000 2124 91.159400 185 3399 5 chr2A.!!$R2 3214
5 TraesCS2B01G206500 chr2A 610175620 610178162 2542 False 797.500000 1026 80.211500 1 2469 2 chr2A.!!$F3 2468
6 TraesCS2B01G206500 chr2D 131641145 131643807 2662 True 980.750000 2121 93.591250 248 3316 4 chr2D.!!$R1 3068
7 TraesCS2B01G206500 chr2D 462238125 462241597 3472 False 384.033333 630 84.838667 764 2469 3 chr2D.!!$F2 1705
8 TraesCS2B01G206500 chr1B 275672417 275673442 1025 False 926.000000 926 83.140000 1450 2469 1 chr1B.!!$F3 1019
9 TraesCS2B01G206500 chr1B 275458841 275459861 1020 False 911.000000 911 82.977000 1450 2465 1 chr1B.!!$F1 1015
10 TraesCS2B01G206500 chr1B 275553796 275554820 1024 False 907.000000 907 82.865000 1450 2469 1 chr1B.!!$F2 1019
11 TraesCS2B01G206500 chr1A 246127804 246128832 1028 True 881.000000 881 82.370000 1449 2472 1 chr1A.!!$R1 1023

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
891 919 0.031314 CATCGAGGGTGATGGACGAG 59.969 60.0 0.0 0.0 41.63 4.18 F
969 997 0.034186 TGGTGATGGTGCTGGATTCC 60.034 55.0 0.0 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 4300 0.102481 CTTCACGATCACCGGGGTAG 59.898 60.0 2.12 0.0 43.16 3.18 R
2549 5941 0.182775 AAGCAACGGTCCTTTCTGGT 59.817 50.0 0.00 0.0 37.07 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 60 1.915078 AAGGAGGAGAACATGGCCGG 61.915 60.000 0.00 0.00 0.00 6.13
83 87 2.401766 GCGTGGATCTGCCCAACTG 61.402 63.158 0.00 0.00 38.06 3.16
97 101 0.108186 CAACTGCGATACCCAGAGCA 60.108 55.000 0.00 0.00 38.03 4.26
478 482 0.622665 AAATGCTGAGGACCAGAGGG 59.377 55.000 0.00 0.00 45.78 4.30
687 715 3.181454 CGGATCCTATAAGTGGCCTTTGT 60.181 47.826 10.75 0.00 31.89 2.83
709 737 3.688086 AGGCGACTGTCCACTCTC 58.312 61.111 0.00 0.00 41.13 3.20
728 756 1.884579 TCACGAGAACCAGAGTACCAC 59.115 52.381 0.00 0.00 0.00 4.16
745 773 1.069204 CCACGGAGTACATGGAGATGG 59.931 57.143 0.00 0.00 41.61 3.51
806 834 2.429927 ATGCGTCGAGGATGATGGA 58.570 52.632 9.75 0.00 0.00 3.41
807 835 0.032678 ATGCGTCGAGGATGATGGAC 59.967 55.000 9.75 0.00 0.00 4.02
808 836 4.616592 CGTCGAGGATGATGGACG 57.383 61.111 0.00 0.00 43.28 4.79
809 837 1.008424 CGTCGAGGATGATGGACGG 60.008 63.158 0.00 0.00 44.54 4.79
810 838 1.364171 GTCGAGGATGATGGACGGG 59.636 63.158 0.00 0.00 0.00 5.28
811 839 1.832608 TCGAGGATGATGGACGGGG 60.833 63.158 0.00 0.00 0.00 5.73
812 840 2.872388 CGAGGATGATGGACGGGGG 61.872 68.421 0.00 0.00 0.00 5.40
813 841 3.171388 AGGATGATGGACGGGGGC 61.171 66.667 0.00 0.00 0.00 5.80
814 842 3.488569 GGATGATGGACGGGGGCA 61.489 66.667 0.00 0.00 0.00 5.36
815 843 2.595095 GATGATGGACGGGGGCAA 59.405 61.111 0.00 0.00 0.00 4.52
816 844 1.151450 GATGATGGACGGGGGCAAT 59.849 57.895 0.00 0.00 0.00 3.56
817 845 0.468029 GATGATGGACGGGGGCAATT 60.468 55.000 0.00 0.00 0.00 2.32
818 846 0.468029 ATGATGGACGGGGGCAATTC 60.468 55.000 0.00 0.00 0.00 2.17
819 847 1.077068 GATGGACGGGGGCAATTCA 60.077 57.895 0.00 0.00 0.00 2.57
820 848 0.682855 GATGGACGGGGGCAATTCAA 60.683 55.000 0.00 0.00 0.00 2.69
821 849 0.684153 ATGGACGGGGGCAATTCAAG 60.684 55.000 0.00 0.00 0.00 3.02
822 850 2.710902 GGACGGGGGCAATTCAAGC 61.711 63.158 0.00 0.00 0.00 4.01
823 851 1.976474 GACGGGGGCAATTCAAGCA 60.976 57.895 0.00 0.00 0.00 3.91
824 852 1.937546 GACGGGGGCAATTCAAGCAG 61.938 60.000 0.00 0.00 0.00 4.24
825 853 2.580815 GGGGGCAATTCAAGCAGC 59.419 61.111 0.00 0.00 0.00 5.25
826 854 2.182537 GGGGCAATTCAAGCAGCG 59.817 61.111 0.00 0.00 0.00 5.18
827 855 2.342650 GGGGCAATTCAAGCAGCGA 61.343 57.895 0.00 0.00 0.00 4.93
828 856 1.586028 GGGCAATTCAAGCAGCGAA 59.414 52.632 0.00 0.00 0.00 4.70
829 857 0.457337 GGGCAATTCAAGCAGCGAAG 60.457 55.000 0.00 0.00 0.00 3.79
830 858 0.457337 GGCAATTCAAGCAGCGAAGG 60.457 55.000 0.00 0.00 0.00 3.46
831 859 1.074872 GCAATTCAAGCAGCGAAGGC 61.075 55.000 0.00 0.00 40.37 4.35
832 860 0.241749 CAATTCAAGCAGCGAAGGCA 59.758 50.000 0.00 0.00 43.41 4.75
833 861 0.961019 AATTCAAGCAGCGAAGGCAA 59.039 45.000 0.00 0.00 43.41 4.52
834 862 0.961019 ATTCAAGCAGCGAAGGCAAA 59.039 45.000 0.00 0.00 43.41 3.68
835 863 0.961019 TTCAAGCAGCGAAGGCAAAT 59.039 45.000 0.00 0.00 43.41 2.32
836 864 0.523072 TCAAGCAGCGAAGGCAAATC 59.477 50.000 0.00 0.00 43.41 2.17
837 865 0.241749 CAAGCAGCGAAGGCAAATCA 59.758 50.000 0.00 0.00 43.41 2.57
838 866 0.961019 AAGCAGCGAAGGCAAATCAA 59.039 45.000 0.00 0.00 43.41 2.57
839 867 0.524862 AGCAGCGAAGGCAAATCAAG 59.475 50.000 0.00 0.00 43.41 3.02
840 868 1.074872 GCAGCGAAGGCAAATCAAGC 61.075 55.000 0.00 0.00 43.41 4.01
841 869 0.241749 CAGCGAAGGCAAATCAAGCA 59.758 50.000 0.00 0.00 43.41 3.91
842 870 0.961019 AGCGAAGGCAAATCAAGCAA 59.039 45.000 0.00 0.00 43.41 3.91
843 871 1.547372 AGCGAAGGCAAATCAAGCAAT 59.453 42.857 0.00 0.00 43.41 3.56
844 872 1.657094 GCGAAGGCAAATCAAGCAATG 59.343 47.619 0.00 0.00 39.62 2.82
845 873 2.671914 GCGAAGGCAAATCAAGCAATGA 60.672 45.455 0.00 0.00 40.04 2.57
846 874 3.577667 CGAAGGCAAATCAAGCAATGAA 58.422 40.909 0.00 0.00 42.54 2.57
847 875 3.611113 CGAAGGCAAATCAAGCAATGAAG 59.389 43.478 0.00 0.00 42.54 3.02
848 876 3.604875 AGGCAAATCAAGCAATGAAGG 57.395 42.857 0.00 0.00 42.54 3.46
849 877 2.004733 GGCAAATCAAGCAATGAAGGC 58.995 47.619 0.00 1.71 42.54 4.35
850 878 2.004733 GCAAATCAAGCAATGAAGGCC 58.995 47.619 0.00 0.00 42.54 5.19
851 879 2.613474 GCAAATCAAGCAATGAAGGCCA 60.613 45.455 5.01 0.00 42.54 5.36
852 880 3.666274 CAAATCAAGCAATGAAGGCCAA 58.334 40.909 5.01 0.00 42.54 4.52
853 881 4.258543 CAAATCAAGCAATGAAGGCCAAT 58.741 39.130 5.01 0.00 42.54 3.16
854 882 3.814005 ATCAAGCAATGAAGGCCAATC 57.186 42.857 5.01 3.05 42.54 2.67
855 883 2.527497 TCAAGCAATGAAGGCCAATCA 58.473 42.857 12.99 12.99 34.30 2.57
856 884 2.898612 TCAAGCAATGAAGGCCAATCAA 59.101 40.909 14.39 0.34 34.30 2.57
857 885 3.056393 TCAAGCAATGAAGGCCAATCAAG 60.056 43.478 14.39 11.26 34.30 3.02
858 886 2.532843 AGCAATGAAGGCCAATCAAGT 58.467 42.857 14.39 4.26 0.00 3.16
859 887 3.700538 AGCAATGAAGGCCAATCAAGTA 58.299 40.909 14.39 0.00 0.00 2.24
860 888 3.445096 AGCAATGAAGGCCAATCAAGTAC 59.555 43.478 14.39 5.93 0.00 2.73
861 889 3.731867 GCAATGAAGGCCAATCAAGTACG 60.732 47.826 14.39 4.25 0.00 3.67
862 890 2.107950 TGAAGGCCAATCAAGTACGG 57.892 50.000 5.01 0.00 0.00 4.02
863 891 1.626321 TGAAGGCCAATCAAGTACGGA 59.374 47.619 5.01 0.00 0.00 4.69
864 892 2.280628 GAAGGCCAATCAAGTACGGAG 58.719 52.381 5.01 0.00 0.00 4.63
865 893 1.568504 AGGCCAATCAAGTACGGAGA 58.431 50.000 5.01 0.00 0.00 3.71
866 894 1.207329 AGGCCAATCAAGTACGGAGAC 59.793 52.381 5.01 0.00 0.00 3.36
878 906 3.622756 GGAGACGCATGCATCGAG 58.377 61.111 19.57 2.94 0.00 4.04
879 907 1.953138 GGAGACGCATGCATCGAGG 60.953 63.158 19.57 2.13 0.00 4.63
880 908 1.953138 GAGACGCATGCATCGAGGG 60.953 63.158 19.57 10.78 0.00 4.30
881 909 2.202932 GACGCATGCATCGAGGGT 60.203 61.111 19.57 13.54 0.00 4.34
882 910 2.512286 ACGCATGCATCGAGGGTG 60.512 61.111 19.57 8.79 0.00 4.61
883 911 2.202919 CGCATGCATCGAGGGTGA 60.203 61.111 19.57 0.00 0.00 4.02
884 912 1.596203 CGCATGCATCGAGGGTGAT 60.596 57.895 19.57 0.00 0.00 3.06
885 913 1.838568 CGCATGCATCGAGGGTGATG 61.839 60.000 19.57 0.00 46.78 3.07
886 914 1.512996 GCATGCATCGAGGGTGATGG 61.513 60.000 14.21 0.00 44.72 3.51
887 915 4.048696 TGCATCGAGGGTGATGGA 57.951 55.556 0.00 0.05 44.72 3.41
888 916 1.522092 TGCATCGAGGGTGATGGAC 59.478 57.895 0.00 0.00 44.72 4.02
889 917 1.592669 GCATCGAGGGTGATGGACG 60.593 63.158 0.00 0.00 44.72 4.79
890 918 2.016393 GCATCGAGGGTGATGGACGA 62.016 60.000 0.00 0.00 44.72 4.20
891 919 0.031314 CATCGAGGGTGATGGACGAG 59.969 60.000 0.00 0.00 41.63 4.18
892 920 1.109920 ATCGAGGGTGATGGACGAGG 61.110 60.000 0.00 0.00 36.49 4.63
893 921 2.786495 CGAGGGTGATGGACGAGGG 61.786 68.421 0.00 0.00 0.00 4.30
894 922 3.083997 AGGGTGATGGACGAGGGC 61.084 66.667 0.00 0.00 0.00 5.19
895 923 3.399181 GGGTGATGGACGAGGGCA 61.399 66.667 0.00 0.00 0.00 5.36
896 924 2.668632 GGTGATGGACGAGGGCAA 59.331 61.111 0.00 0.00 0.00 4.52
897 925 1.224592 GGTGATGGACGAGGGCAAT 59.775 57.895 0.00 0.00 0.00 3.56
898 926 0.394352 GGTGATGGACGAGGGCAATT 60.394 55.000 0.00 0.00 0.00 2.32
899 927 1.017387 GTGATGGACGAGGGCAATTC 58.983 55.000 0.00 0.00 0.00 2.17
900 928 0.617935 TGATGGACGAGGGCAATTCA 59.382 50.000 0.00 0.00 0.00 2.57
901 929 1.004161 TGATGGACGAGGGCAATTCAA 59.996 47.619 0.00 0.00 0.00 2.69
902 930 1.672881 GATGGACGAGGGCAATTCAAG 59.327 52.381 0.00 0.00 0.00 3.02
903 931 0.960364 TGGACGAGGGCAATTCAAGC 60.960 55.000 0.00 0.00 0.00 4.01
904 932 0.960364 GGACGAGGGCAATTCAAGCA 60.960 55.000 0.00 0.00 0.00 3.91
905 933 0.881118 GACGAGGGCAATTCAAGCAA 59.119 50.000 0.00 0.00 0.00 3.91
906 934 1.474077 GACGAGGGCAATTCAAGCAAT 59.526 47.619 0.00 0.00 0.00 3.56
907 935 1.203052 ACGAGGGCAATTCAAGCAATG 59.797 47.619 0.00 0.00 0.00 2.82
908 936 1.473677 CGAGGGCAATTCAAGCAATGA 59.526 47.619 0.00 0.00 35.85 2.57
918 946 4.603989 TTCAAGCAATGAAGGCAAATCA 57.396 36.364 1.23 0.00 43.08 2.57
919 947 4.603989 TCAAGCAATGAAGGCAAATCAA 57.396 36.364 0.00 0.00 34.30 2.57
920 948 4.562082 TCAAGCAATGAAGGCAAATCAAG 58.438 39.130 0.00 0.00 34.30 3.02
921 949 2.968675 AGCAATGAAGGCAAATCAAGC 58.031 42.857 0.00 0.00 34.22 4.01
922 950 2.300723 AGCAATGAAGGCAAATCAAGCA 59.699 40.909 13.71 0.00 35.57 3.91
923 951 3.068560 GCAATGAAGGCAAATCAAGCAA 58.931 40.909 9.29 0.00 34.20 3.91
924 952 3.120442 GCAATGAAGGCAAATCAAGCAAC 60.120 43.478 9.29 0.00 34.20 4.17
925 953 2.420628 TGAAGGCAAATCAAGCAACG 57.579 45.000 0.00 0.00 0.00 4.10
926 954 1.952990 TGAAGGCAAATCAAGCAACGA 59.047 42.857 0.00 0.00 0.00 3.85
927 955 2.360483 TGAAGGCAAATCAAGCAACGAA 59.640 40.909 0.00 0.00 0.00 3.85
928 956 3.181482 TGAAGGCAAATCAAGCAACGAAA 60.181 39.130 0.00 0.00 0.00 3.46
929 957 3.017265 AGGCAAATCAAGCAACGAAAG 57.983 42.857 0.00 0.00 0.00 2.62
930 958 1.456923 GGCAAATCAAGCAACGAAAGC 59.543 47.619 0.00 0.00 0.00 3.51
931 959 2.126467 GCAAATCAAGCAACGAAAGCA 58.874 42.857 0.00 0.00 0.00 3.91
932 960 2.539274 GCAAATCAAGCAACGAAAGCAA 59.461 40.909 0.00 0.00 0.00 3.91
933 961 3.001127 GCAAATCAAGCAACGAAAGCAAA 59.999 39.130 0.00 0.00 0.00 3.68
934 962 4.318974 GCAAATCAAGCAACGAAAGCAAAT 60.319 37.500 0.00 0.00 0.00 2.32
935 963 5.368374 CAAATCAAGCAACGAAAGCAAATC 58.632 37.500 0.00 0.00 0.00 2.17
936 964 3.706802 TCAAGCAACGAAAGCAAATCA 57.293 38.095 0.00 0.00 0.00 2.57
937 965 4.039151 TCAAGCAACGAAAGCAAATCAA 57.961 36.364 0.00 0.00 0.00 2.57
938 966 4.043750 TCAAGCAACGAAAGCAAATCAAG 58.956 39.130 0.00 0.00 0.00 3.02
939 967 2.397549 AGCAACGAAAGCAAATCAAGC 58.602 42.857 0.00 0.00 0.00 4.01
940 968 2.126467 GCAACGAAAGCAAATCAAGCA 58.874 42.857 0.00 0.00 0.00 3.91
941 969 2.097250 GCAACGAAAGCAAATCAAGCAC 60.097 45.455 0.00 0.00 0.00 4.40
942 970 3.114809 CAACGAAAGCAAATCAAGCACA 58.885 40.909 0.00 0.00 0.00 4.57
943 971 3.435105 ACGAAAGCAAATCAAGCACAA 57.565 38.095 0.00 0.00 0.00 3.33
944 972 3.779759 ACGAAAGCAAATCAAGCACAAA 58.220 36.364 0.00 0.00 0.00 2.83
945 973 3.798337 ACGAAAGCAAATCAAGCACAAAG 59.202 39.130 0.00 0.00 0.00 2.77
946 974 3.182972 CGAAAGCAAATCAAGCACAAAGG 59.817 43.478 0.00 0.00 0.00 3.11
947 975 2.159327 AGCAAATCAAGCACAAAGGC 57.841 45.000 0.00 0.00 0.00 4.35
948 976 1.413445 AGCAAATCAAGCACAAAGGCA 59.587 42.857 0.00 0.00 35.83 4.75
949 977 1.796459 GCAAATCAAGCACAAAGGCAG 59.204 47.619 0.00 0.00 35.83 4.85
950 978 2.804212 GCAAATCAAGCACAAAGGCAGT 60.804 45.455 0.00 0.00 35.83 4.40
951 979 2.798283 CAAATCAAGCACAAAGGCAGTG 59.202 45.455 1.09 1.09 39.92 3.66
952 980 0.963962 ATCAAGCACAAAGGCAGTGG 59.036 50.000 6.83 0.00 37.46 4.00
954 982 0.249155 CAAGCACAAAGGCAGTGGTG 60.249 55.000 9.57 1.40 45.94 4.17
955 983 0.395586 AAGCACAAAGGCAGTGGTGA 60.396 50.000 9.57 0.00 45.94 4.02
956 984 0.178981 AGCACAAAGGCAGTGGTGAT 60.179 50.000 8.31 0.00 45.05 3.06
957 985 0.038892 GCACAAAGGCAGTGGTGATG 60.039 55.000 6.83 0.00 37.46 3.07
958 986 0.599558 CACAAAGGCAGTGGTGATGG 59.400 55.000 0.00 0.00 33.16 3.51
959 987 0.185901 ACAAAGGCAGTGGTGATGGT 59.814 50.000 0.00 0.00 0.00 3.55
960 988 0.599558 CAAAGGCAGTGGTGATGGTG 59.400 55.000 0.00 0.00 0.00 4.17
961 989 1.181098 AAAGGCAGTGGTGATGGTGC 61.181 55.000 0.00 0.00 35.07 5.01
962 990 2.034687 GGCAGTGGTGATGGTGCT 59.965 61.111 0.00 0.00 36.15 4.40
963 991 2.338015 GGCAGTGGTGATGGTGCTG 61.338 63.158 0.00 0.00 36.15 4.41
964 992 2.338015 GCAGTGGTGATGGTGCTGG 61.338 63.158 0.00 0.00 32.97 4.85
965 993 1.376086 CAGTGGTGATGGTGCTGGA 59.624 57.895 0.00 0.00 0.00 3.86
966 994 0.034767 CAGTGGTGATGGTGCTGGAT 60.035 55.000 0.00 0.00 0.00 3.41
967 995 0.700564 AGTGGTGATGGTGCTGGATT 59.299 50.000 0.00 0.00 0.00 3.01
968 996 1.098050 GTGGTGATGGTGCTGGATTC 58.902 55.000 0.00 0.00 0.00 2.52
969 997 0.034186 TGGTGATGGTGCTGGATTCC 60.034 55.000 0.00 0.00 0.00 3.01
970 998 1.097547 GGTGATGGTGCTGGATTCCG 61.098 60.000 0.00 0.00 0.00 4.30
971 999 0.107703 GTGATGGTGCTGGATTCCGA 60.108 55.000 0.00 0.00 0.00 4.55
972 1000 0.839277 TGATGGTGCTGGATTCCGAT 59.161 50.000 0.00 0.00 0.00 4.18
973 1001 1.233019 GATGGTGCTGGATTCCGATG 58.767 55.000 0.00 0.00 0.00 3.84
974 1002 0.839277 ATGGTGCTGGATTCCGATGA 59.161 50.000 0.00 0.00 0.00 2.92
975 1003 0.178767 TGGTGCTGGATTCCGATGAG 59.821 55.000 0.00 0.00 0.00 2.90
976 1004 0.533755 GGTGCTGGATTCCGATGAGG 60.534 60.000 0.00 0.00 42.97 3.86
986 1014 1.489481 TCCGATGAGGAGCATGAAGT 58.511 50.000 0.00 0.00 45.98 3.01
987 1015 1.137675 TCCGATGAGGAGCATGAAGTG 59.862 52.381 0.00 0.00 45.98 3.16
988 1016 4.684240 TCCGATGAGGAGCATGAAGTGC 62.684 54.545 0.00 0.00 45.98 4.40
999 1027 2.292267 CATGAAGTGCAGGGTATGACC 58.708 52.381 0.00 0.00 37.60 4.02
1000 1028 1.357137 TGAAGTGCAGGGTATGACCA 58.643 50.000 0.00 0.00 41.02 4.02
1041 3159 2.886862 AGATGCTCGAATGTGAGGAG 57.113 50.000 0.00 0.00 39.80 3.69
1164 3285 1.138859 CAGGATGATAAGGACACGCCA 59.861 52.381 0.00 0.00 39.69 5.69
1166 3287 2.238646 AGGATGATAAGGACACGCCAAA 59.761 45.455 0.00 0.00 40.02 3.28
1167 3288 2.354821 GGATGATAAGGACACGCCAAAC 59.645 50.000 0.00 0.00 40.02 2.93
1171 3292 0.759959 TAAGGACACGCCAAACTGGA 59.240 50.000 0.00 0.00 40.96 3.86
1172 3293 0.110486 AAGGACACGCCAAACTGGAT 59.890 50.000 0.00 0.00 40.96 3.41
1173 3294 0.321653 AGGACACGCCAAACTGGATC 60.322 55.000 0.00 0.00 40.96 3.36
1174 3295 0.321653 GGACACGCCAAACTGGATCT 60.322 55.000 0.00 0.00 40.96 2.75
1175 3296 1.079503 GACACGCCAAACTGGATCTC 58.920 55.000 0.00 0.00 40.96 2.75
1176 3297 0.687354 ACACGCCAAACTGGATCTCT 59.313 50.000 0.00 0.00 40.96 3.10
1177 3298 1.081892 CACGCCAAACTGGATCTCTG 58.918 55.000 0.00 0.00 40.96 3.35
1178 3299 0.687354 ACGCCAAACTGGATCTCTGT 59.313 50.000 0.00 0.00 40.96 3.41
1179 3300 1.338200 ACGCCAAACTGGATCTCTGTC 60.338 52.381 0.00 0.00 40.96 3.51
1180 3301 1.066573 CGCCAAACTGGATCTCTGTCT 60.067 52.381 0.00 0.00 40.96 3.41
1181 3302 2.626840 GCCAAACTGGATCTCTGTCTC 58.373 52.381 0.00 0.00 40.96 3.36
1182 3303 2.027745 GCCAAACTGGATCTCTGTCTCA 60.028 50.000 0.00 0.00 40.96 3.27
1183 3304 3.594134 CCAAACTGGATCTCTGTCTCAC 58.406 50.000 0.00 0.00 40.96 3.51
1185 3306 4.323333 CCAAACTGGATCTCTGTCTCACAT 60.323 45.833 0.00 0.00 40.96 3.21
1192 3313 4.262121 GGATCTCTGTCTCACATCAGGATG 60.262 50.000 7.70 7.70 44.15 3.51
1233 3369 3.896888 GGATCTCTGTCTCACATCAGGAT 59.103 47.826 0.00 0.00 33.13 3.24
1252 3484 0.337773 TGAGGCAGAGGAGATGGAGT 59.662 55.000 0.00 0.00 0.00 3.85
1265 3497 1.208293 GATGGAGTTGGAGGACAGGTC 59.792 57.143 0.00 0.00 0.00 3.85
1284 3516 0.638746 CGTTTGCTAGACGCCGTAAG 59.361 55.000 0.00 0.00 38.05 2.34
1327 3562 0.039074 CCGCAGTGACTTCGAAGACT 60.039 55.000 31.08 21.07 34.32 3.24
1402 3639 1.337447 ACAATGGCAATGCAAGCAGAC 60.337 47.619 7.79 0.00 0.00 3.51
1433 3670 3.330267 CTTTCGTCCTTCCTTCCTTCAG 58.670 50.000 0.00 0.00 0.00 3.02
1481 3723 3.568007 TGTTGGAACATGGCTAACACTTC 59.432 43.478 13.21 0.00 39.30 3.01
1640 3883 5.454966 TGAAGTGGCCACTCTATGTCTATA 58.545 41.667 37.75 13.19 41.58 1.31
1967 4300 3.685139 TTGATCAGTCACTTCCAGACC 57.315 47.619 0.00 0.00 36.68 3.85
2034 4370 5.978814 ACTCCTTTTGCACGATAGAGTTAT 58.021 37.500 0.00 0.00 41.38 1.89
2036 4372 5.730550 TCCTTTTGCACGATAGAGTTATGT 58.269 37.500 0.00 0.00 41.38 2.29
2440 4788 3.539604 CTTGGTCCCAGCTTATCAAGAG 58.460 50.000 7.44 0.00 35.08 2.85
2475 5867 6.704056 TCCTCTAAGAAGGAATGGTTCTTT 57.296 37.500 3.58 0.00 42.56 2.52
2480 5872 2.558359 AGAAGGAATGGTTCTTTTGGCG 59.442 45.455 0.00 0.00 29.57 5.69
2491 5883 2.722094 TCTTTTGGCGTGGATGCTATT 58.278 42.857 0.00 0.00 34.52 1.73
2492 5884 2.682856 TCTTTTGGCGTGGATGCTATTC 59.317 45.455 0.00 0.00 34.52 1.75
2493 5885 2.418368 TTTGGCGTGGATGCTATTCT 57.582 45.000 0.00 0.00 34.52 2.40
2494 5886 2.418368 TTGGCGTGGATGCTATTCTT 57.582 45.000 0.00 0.00 34.52 2.52
2495 5887 1.667236 TGGCGTGGATGCTATTCTTG 58.333 50.000 0.00 0.00 34.52 3.02
2496 5888 1.065491 TGGCGTGGATGCTATTCTTGT 60.065 47.619 0.00 0.00 34.52 3.16
2497 5889 1.599542 GGCGTGGATGCTATTCTTGTC 59.400 52.381 0.00 0.00 34.52 3.18
2498 5890 2.555199 GCGTGGATGCTATTCTTGTCT 58.445 47.619 0.00 0.00 0.00 3.41
2499 5891 2.939103 GCGTGGATGCTATTCTTGTCTT 59.061 45.455 0.00 0.00 0.00 3.01
2500 5892 3.242543 GCGTGGATGCTATTCTTGTCTTG 60.243 47.826 0.00 0.00 0.00 3.02
2501 5893 3.935203 CGTGGATGCTATTCTTGTCTTGT 59.065 43.478 0.00 0.00 0.00 3.16
2502 5894 4.393062 CGTGGATGCTATTCTTGTCTTGTT 59.607 41.667 0.00 0.00 0.00 2.83
2503 5895 5.634896 GTGGATGCTATTCTTGTCTTGTTG 58.365 41.667 0.00 0.00 0.00 3.33
2504 5896 5.412594 GTGGATGCTATTCTTGTCTTGTTGA 59.587 40.000 0.00 0.00 0.00 3.18
2505 5897 6.003326 TGGATGCTATTCTTGTCTTGTTGAA 58.997 36.000 0.00 0.00 0.00 2.69
2506 5898 6.072508 TGGATGCTATTCTTGTCTTGTTGAAC 60.073 38.462 0.00 0.00 0.00 3.18
2507 5899 5.342806 TGCTATTCTTGTCTTGTTGAACG 57.657 39.130 0.00 0.00 0.00 3.95
2508 5900 4.213270 TGCTATTCTTGTCTTGTTGAACGG 59.787 41.667 0.00 0.00 0.00 4.44
2509 5901 4.451096 GCTATTCTTGTCTTGTTGAACGGA 59.549 41.667 0.00 0.00 0.00 4.69
2510 5902 5.389935 GCTATTCTTGTCTTGTTGAACGGAG 60.390 44.000 0.00 0.00 0.00 4.63
2511 5903 2.833794 TCTTGTCTTGTTGAACGGAGG 58.166 47.619 0.00 0.00 0.00 4.30
2512 5904 2.432874 TCTTGTCTTGTTGAACGGAGGA 59.567 45.455 0.00 0.00 0.00 3.71
2513 5905 3.071023 TCTTGTCTTGTTGAACGGAGGAT 59.929 43.478 0.00 0.00 0.00 3.24
2514 5906 3.485463 TGTCTTGTTGAACGGAGGATT 57.515 42.857 0.00 0.00 0.00 3.01
2515 5907 3.138304 TGTCTTGTTGAACGGAGGATTG 58.862 45.455 0.00 0.00 0.00 2.67
2516 5908 3.139077 GTCTTGTTGAACGGAGGATTGT 58.861 45.455 0.00 0.00 0.00 2.71
2517 5909 3.058914 GTCTTGTTGAACGGAGGATTGTG 60.059 47.826 0.00 0.00 0.00 3.33
2518 5910 1.890876 TGTTGAACGGAGGATTGTGG 58.109 50.000 0.00 0.00 0.00 4.17
2519 5911 1.142060 TGTTGAACGGAGGATTGTGGT 59.858 47.619 0.00 0.00 0.00 4.16
2520 5912 2.369203 TGTTGAACGGAGGATTGTGGTA 59.631 45.455 0.00 0.00 0.00 3.25
2521 5913 3.008594 TGTTGAACGGAGGATTGTGGTAT 59.991 43.478 0.00 0.00 0.00 2.73
2522 5914 4.223255 TGTTGAACGGAGGATTGTGGTATA 59.777 41.667 0.00 0.00 0.00 1.47
2523 5915 5.104693 TGTTGAACGGAGGATTGTGGTATAT 60.105 40.000 0.00 0.00 0.00 0.86
2524 5916 5.623956 TGAACGGAGGATTGTGGTATATT 57.376 39.130 0.00 0.00 0.00 1.28
2525 5917 5.364778 TGAACGGAGGATTGTGGTATATTG 58.635 41.667 0.00 0.00 0.00 1.90
2526 5918 5.104693 TGAACGGAGGATTGTGGTATATTGT 60.105 40.000 0.00 0.00 0.00 2.71
2527 5919 5.367945 ACGGAGGATTGTGGTATATTGTT 57.632 39.130 0.00 0.00 0.00 2.83
2528 5920 5.123227 ACGGAGGATTGTGGTATATTGTTG 58.877 41.667 0.00 0.00 0.00 3.33
2529 5921 5.104693 ACGGAGGATTGTGGTATATTGTTGA 60.105 40.000 0.00 0.00 0.00 3.18
2530 5922 5.820423 CGGAGGATTGTGGTATATTGTTGAA 59.180 40.000 0.00 0.00 0.00 2.69
2531 5923 6.017934 CGGAGGATTGTGGTATATTGTTGAAG 60.018 42.308 0.00 0.00 0.00 3.02
2532 5924 7.054124 GGAGGATTGTGGTATATTGTTGAAGA 58.946 38.462 0.00 0.00 0.00 2.87
2533 5925 7.721399 GGAGGATTGTGGTATATTGTTGAAGAT 59.279 37.037 0.00 0.00 0.00 2.40
2534 5926 9.125026 GAGGATTGTGGTATATTGTTGAAGATT 57.875 33.333 0.00 0.00 0.00 2.40
2535 5927 8.906867 AGGATTGTGGTATATTGTTGAAGATTG 58.093 33.333 0.00 0.00 0.00 2.67
2536 5928 8.137437 GGATTGTGGTATATTGTTGAAGATTGG 58.863 37.037 0.00 0.00 0.00 3.16
2537 5929 8.593945 ATTGTGGTATATTGTTGAAGATTGGT 57.406 30.769 0.00 0.00 0.00 3.67
2538 5930 7.389803 TGTGGTATATTGTTGAAGATTGGTG 57.610 36.000 0.00 0.00 0.00 4.17
2539 5931 7.171653 TGTGGTATATTGTTGAAGATTGGTGA 58.828 34.615 0.00 0.00 0.00 4.02
2540 5932 7.833682 TGTGGTATATTGTTGAAGATTGGTGAT 59.166 33.333 0.00 0.00 0.00 3.06
2541 5933 8.686334 GTGGTATATTGTTGAAGATTGGTGATT 58.314 33.333 0.00 0.00 0.00 2.57
2542 5934 8.902806 TGGTATATTGTTGAAGATTGGTGATTC 58.097 33.333 0.00 0.00 0.00 2.52
2543 5935 9.125026 GGTATATTGTTGAAGATTGGTGATTCT 57.875 33.333 0.00 0.00 0.00 2.40
2547 5939 6.500684 TGTTGAAGATTGGTGATTCTAAGC 57.499 37.500 0.00 0.00 0.00 3.09
2548 5940 5.415701 TGTTGAAGATTGGTGATTCTAAGCC 59.584 40.000 0.00 0.00 0.00 4.35
2549 5941 5.178096 TGAAGATTGGTGATTCTAAGCCA 57.822 39.130 0.00 0.00 0.00 4.75
2550 5942 4.943705 TGAAGATTGGTGATTCTAAGCCAC 59.056 41.667 0.00 0.00 0.00 5.01
2557 5949 4.954092 GTGATTCTAAGCCACCAGAAAG 57.046 45.455 0.00 0.00 34.61 2.62
2558 5950 3.691609 GTGATTCTAAGCCACCAGAAAGG 59.308 47.826 0.00 0.00 45.67 3.11
2559 5951 3.587061 TGATTCTAAGCCACCAGAAAGGA 59.413 43.478 0.00 0.00 41.22 3.36
2560 5952 3.418684 TTCTAAGCCACCAGAAAGGAC 57.581 47.619 0.00 0.00 41.22 3.85
2561 5953 1.628846 TCTAAGCCACCAGAAAGGACC 59.371 52.381 0.00 0.00 41.22 4.46
2562 5954 0.323629 TAAGCCACCAGAAAGGACCG 59.676 55.000 0.00 0.00 41.22 4.79
2563 5955 1.705997 AAGCCACCAGAAAGGACCGT 61.706 55.000 0.00 0.00 41.22 4.83
2564 5956 1.228154 GCCACCAGAAAGGACCGTT 60.228 57.895 0.00 0.00 41.22 4.44
2565 5957 1.515521 GCCACCAGAAAGGACCGTTG 61.516 60.000 0.00 0.00 41.22 4.10
2566 5958 1.515521 CCACCAGAAAGGACCGTTGC 61.516 60.000 0.00 0.00 41.22 4.17
2567 5959 0.535102 CACCAGAAAGGACCGTTGCT 60.535 55.000 0.00 0.00 41.22 3.91
2568 5960 0.182775 ACCAGAAAGGACCGTTGCTT 59.817 50.000 0.00 0.00 41.22 3.91
2569 5961 0.593128 CCAGAAAGGACCGTTGCTTG 59.407 55.000 0.00 0.00 41.22 4.01
2570 5962 1.308998 CAGAAAGGACCGTTGCTTGT 58.691 50.000 0.00 0.00 32.87 3.16
2571 5963 1.676006 CAGAAAGGACCGTTGCTTGTT 59.324 47.619 0.00 0.00 32.87 2.83
2572 5964 1.676006 AGAAAGGACCGTTGCTTGTTG 59.324 47.619 0.00 0.00 32.87 3.33
2573 5965 1.673920 GAAAGGACCGTTGCTTGTTGA 59.326 47.619 0.00 0.00 32.87 3.18
2574 5966 1.757682 AAGGACCGTTGCTTGTTGAA 58.242 45.000 0.00 0.00 30.98 2.69
2575 5967 1.308998 AGGACCGTTGCTTGTTGAAG 58.691 50.000 0.00 0.00 0.00 3.02
2576 5968 1.134220 AGGACCGTTGCTTGTTGAAGA 60.134 47.619 0.00 0.00 0.00 2.87
2577 5969 1.880027 GGACCGTTGCTTGTTGAAGAT 59.120 47.619 0.00 0.00 0.00 2.40
2578 5970 2.293399 GGACCGTTGCTTGTTGAAGATT 59.707 45.455 0.00 0.00 0.00 2.40
2579 5971 3.300009 GACCGTTGCTTGTTGAAGATTG 58.700 45.455 0.00 0.00 0.00 2.67
2580 5972 2.687935 ACCGTTGCTTGTTGAAGATTGT 59.312 40.909 0.00 0.00 0.00 2.71
2581 5973 3.044986 CCGTTGCTTGTTGAAGATTGTG 58.955 45.455 0.00 0.00 0.00 3.33
2582 5974 3.044986 CGTTGCTTGTTGAAGATTGTGG 58.955 45.455 0.00 0.00 0.00 4.17
2583 5975 3.489059 CGTTGCTTGTTGAAGATTGTGGT 60.489 43.478 0.00 0.00 0.00 4.16
2584 5976 4.260990 CGTTGCTTGTTGAAGATTGTGGTA 60.261 41.667 0.00 0.00 0.00 3.25
2585 5977 5.562696 CGTTGCTTGTTGAAGATTGTGGTAT 60.563 40.000 0.00 0.00 0.00 2.73
2586 5978 5.627499 TGCTTGTTGAAGATTGTGGTATC 57.373 39.130 0.00 0.00 0.00 2.24
2587 5979 4.458989 TGCTTGTTGAAGATTGTGGTATCC 59.541 41.667 0.00 0.00 0.00 2.59
2588 5980 4.702131 GCTTGTTGAAGATTGTGGTATCCT 59.298 41.667 0.00 0.00 0.00 3.24
2589 5981 5.163713 GCTTGTTGAAGATTGTGGTATCCTC 60.164 44.000 0.00 0.00 0.00 3.71
2590 5982 5.762179 TGTTGAAGATTGTGGTATCCTCT 57.238 39.130 0.00 0.00 0.00 3.69
2591 5983 6.867519 TGTTGAAGATTGTGGTATCCTCTA 57.132 37.500 0.00 0.00 0.00 2.43
2592 5984 7.252612 TGTTGAAGATTGTGGTATCCTCTAA 57.747 36.000 0.00 0.00 0.00 2.10
2593 5985 7.331026 TGTTGAAGATTGTGGTATCCTCTAAG 58.669 38.462 0.00 0.00 0.00 2.18
2594 5986 7.180229 TGTTGAAGATTGTGGTATCCTCTAAGA 59.820 37.037 0.00 0.00 0.00 2.10
2595 5987 7.733773 TGAAGATTGTGGTATCCTCTAAGAA 57.266 36.000 0.00 0.00 0.00 2.52
2596 5988 7.786030 TGAAGATTGTGGTATCCTCTAAGAAG 58.214 38.462 0.00 0.00 0.00 2.85
2597 5989 7.619698 TGAAGATTGTGGTATCCTCTAAGAAGA 59.380 37.037 0.00 0.00 0.00 2.87
2598 5990 8.560124 AAGATTGTGGTATCCTCTAAGAAGAT 57.440 34.615 0.00 0.00 0.00 2.40
2599 5991 8.560124 AGATTGTGGTATCCTCTAAGAAGATT 57.440 34.615 0.00 0.00 0.00 2.40
2600 5992 8.428063 AGATTGTGGTATCCTCTAAGAAGATTG 58.572 37.037 0.00 0.00 0.00 2.67
2601 5993 6.485830 TGTGGTATCCTCTAAGAAGATTGG 57.514 41.667 0.00 0.00 0.00 3.16
2602 5994 5.964477 TGTGGTATCCTCTAAGAAGATTGGT 59.036 40.000 0.00 0.00 0.00 3.67
2603 5995 6.127054 TGTGGTATCCTCTAAGAAGATTGGTG 60.127 42.308 0.00 0.00 0.00 4.17
2604 5996 6.098409 GTGGTATCCTCTAAGAAGATTGGTGA 59.902 42.308 0.00 0.00 0.00 4.02
2605 5997 6.846505 TGGTATCCTCTAAGAAGATTGGTGAT 59.153 38.462 0.00 0.00 0.00 3.06
2606 5998 7.348274 TGGTATCCTCTAAGAAGATTGGTGATT 59.652 37.037 0.00 0.00 0.00 2.57
2607 5999 7.875554 GGTATCCTCTAAGAAGATTGGTGATTC 59.124 40.741 0.00 0.00 0.00 2.52
2608 6000 7.688918 ATCCTCTAAGAAGATTGGTGATTCT 57.311 36.000 0.00 0.00 34.81 2.40
2609 6001 8.789767 ATCCTCTAAGAAGATTGGTGATTCTA 57.210 34.615 0.00 0.00 33.05 2.10
2610 6002 8.609617 TCCTCTAAGAAGATTGGTGATTCTAA 57.390 34.615 0.00 0.00 33.05 2.10
2611 6003 8.700051 TCCTCTAAGAAGATTGGTGATTCTAAG 58.300 37.037 0.00 0.00 33.05 2.18
2612 6004 8.700051 CCTCTAAGAAGATTGGTGATTCTAAGA 58.300 37.037 0.00 0.00 33.05 2.10
2615 6007 9.270640 CTAAGAAGATTGGTGATTCTAAGATGG 57.729 37.037 0.00 0.00 33.05 3.51
2616 6008 7.443302 AGAAGATTGGTGATTCTAAGATGGA 57.557 36.000 0.00 0.00 31.63 3.41
2617 6009 7.865820 AGAAGATTGGTGATTCTAAGATGGAA 58.134 34.615 0.00 0.00 31.63 3.53
2618 6010 8.331740 AGAAGATTGGTGATTCTAAGATGGAAA 58.668 33.333 0.00 0.00 31.63 3.13
2619 6011 9.129532 GAAGATTGGTGATTCTAAGATGGAAAT 57.870 33.333 0.00 0.00 0.00 2.17
2620 6012 8.688747 AGATTGGTGATTCTAAGATGGAAATC 57.311 34.615 0.00 0.00 0.00 2.17
2621 6013 7.723172 AGATTGGTGATTCTAAGATGGAAATCC 59.277 37.037 0.00 0.00 0.00 3.01
2622 6014 6.581388 TGGTGATTCTAAGATGGAAATCCT 57.419 37.500 0.44 0.00 36.82 3.24
2623 6015 6.595682 TGGTGATTCTAAGATGGAAATCCTC 58.404 40.000 0.44 0.00 36.82 3.71
2624 6016 6.388100 TGGTGATTCTAAGATGGAAATCCTCT 59.612 38.462 0.44 0.00 36.82 3.69
2625 6017 7.568738 TGGTGATTCTAAGATGGAAATCCTCTA 59.431 37.037 0.44 0.00 36.82 2.43
2626 6018 8.432805 GGTGATTCTAAGATGGAAATCCTCTAA 58.567 37.037 0.44 0.00 36.82 2.10
2627 6019 9.487790 GTGATTCTAAGATGGAAATCCTCTAAG 57.512 37.037 0.44 0.00 36.82 2.18
2628 6020 9.439461 TGATTCTAAGATGGAAATCCTCTAAGA 57.561 33.333 0.44 0.00 36.82 2.10
2631 6023 8.256356 TCTAAGATGGAAATCCTCTAAGAAGG 57.744 38.462 0.44 0.00 37.81 3.46
2642 6034 5.479306 TCCTCTAAGAAGGATTGTTGAACG 58.521 41.667 0.00 0.00 40.60 3.95
2643 6035 4.631813 CCTCTAAGAAGGATTGTTGAACGG 59.368 45.833 0.00 0.00 38.87 4.44
2644 6036 5.477607 TCTAAGAAGGATTGTTGAACGGA 57.522 39.130 0.00 0.00 32.11 4.69
2645 6037 5.479306 TCTAAGAAGGATTGTTGAACGGAG 58.521 41.667 0.00 0.00 32.11 4.63
2646 6038 3.059352 AGAAGGATTGTTGAACGGAGG 57.941 47.619 0.00 0.00 0.00 4.30
2647 6039 2.637872 AGAAGGATTGTTGAACGGAGGA 59.362 45.455 0.00 0.00 0.00 3.71
2657 6049 3.694043 TGAACGGAGGAATGATTCACA 57.306 42.857 7.56 0.00 0.00 3.58
2690 6083 4.761235 ATCTGTTCTTGTCTTGCATGTG 57.239 40.909 0.00 0.00 0.00 3.21
2705 6099 0.951558 ATGTGGGTTGCGAAACTGTC 59.048 50.000 6.17 0.00 0.00 3.51
2706 6100 1.098712 TGTGGGTTGCGAAACTGTCC 61.099 55.000 6.17 0.00 0.00 4.02
2750 6146 4.378459 GCTAGTATGTCCAACTGTTTGTGC 60.378 45.833 0.00 0.00 0.00 4.57
2754 6150 1.333308 TGTCCAACTGTTTGTGCATCG 59.667 47.619 0.00 0.00 0.00 3.84
2787 6183 4.644103 TCCGACTATTTGTGCCTACTAC 57.356 45.455 0.00 0.00 0.00 2.73
2791 6187 5.815740 CCGACTATTTGTGCCTACTACAATT 59.184 40.000 0.00 0.00 37.81 2.32
2861 6257 6.380995 CAGTTATGCTGTGCAAAATGTCTTA 58.619 36.000 0.00 0.00 43.62 2.10
2862 6258 7.031372 CAGTTATGCTGTGCAAAATGTCTTAT 58.969 34.615 0.00 0.00 43.62 1.73
2863 6259 8.183536 CAGTTATGCTGTGCAAAATGTCTTATA 58.816 33.333 0.00 0.00 43.62 0.98
2864 6260 8.906867 AGTTATGCTGTGCAAAATGTCTTATAT 58.093 29.630 0.00 0.00 43.62 0.86
2923 6320 9.660180 TTTGTTTGTGAAAACCTTAATTAGCTT 57.340 25.926 0.00 0.00 31.87 3.74
2988 6385 4.202131 GGTTCTCATAACTACCTTCTCGGG 60.202 50.000 0.00 0.00 36.97 5.14
3030 6427 8.335356 GCTTCCCTTCAAAAGTGAAATAAAAAC 58.665 33.333 0.00 0.00 43.18 2.43
3031 6428 8.725405 TTCCCTTCAAAAGTGAAATAAAAACC 57.275 30.769 0.00 0.00 43.18 3.27
3032 6429 6.981559 TCCCTTCAAAAGTGAAATAAAAACCG 59.018 34.615 0.00 0.00 43.18 4.44
3033 6430 6.759356 CCCTTCAAAAGTGAAATAAAAACCGT 59.241 34.615 0.00 0.00 43.18 4.83
3034 6431 7.279090 CCCTTCAAAAGTGAAATAAAAACCGTT 59.721 33.333 0.00 0.00 43.18 4.44
3035 6432 8.113675 CCTTCAAAAGTGAAATAAAAACCGTTG 58.886 33.333 0.00 0.00 43.18 4.10
3036 6433 6.994992 TCAAAAGTGAAATAAAAACCGTTGC 58.005 32.000 0.00 0.00 0.00 4.17
3037 6434 6.814146 TCAAAAGTGAAATAAAAACCGTTGCT 59.186 30.769 0.00 0.00 0.00 3.91
3038 6435 7.332182 TCAAAAGTGAAATAAAAACCGTTGCTT 59.668 29.630 0.00 0.00 0.00 3.91
3039 6436 7.603963 AAAGTGAAATAAAAACCGTTGCTTT 57.396 28.000 0.00 0.00 0.00 3.51
3040 6437 8.705048 AAAGTGAAATAAAAACCGTTGCTTTA 57.295 26.923 0.00 0.00 0.00 1.85
3041 6438 7.924103 AGTGAAATAAAAACCGTTGCTTTAG 57.076 32.000 0.00 0.00 0.00 1.85
3185 6601 7.712264 AAATGGTGTGTTGTACATGATTTTG 57.288 32.000 0.00 0.00 42.24 2.44
3265 6688 5.480422 TCAGCATACCTCTGTTCAGAACTTA 59.520 40.000 14.51 1.87 33.48 2.24
3367 6790 9.715121 TTTAAGAGATTCCACAATAAACTACGT 57.285 29.630 0.00 0.00 0.00 3.57
3369 6792 8.699283 AAGAGATTCCACAATAAACTACGTAC 57.301 34.615 0.00 0.00 0.00 3.67
3370 6793 6.971184 AGAGATTCCACAATAAACTACGTACG 59.029 38.462 15.01 15.01 0.00 3.67
3392 6815 6.170506 ACGGAGCAAAATGAGTGAACTTATA 58.829 36.000 0.00 0.00 0.00 0.98
3395 6818 7.464710 CGGAGCAAAATGAGTGAACTTATACTC 60.465 40.741 0.00 0.00 42.77 2.59
3396 6819 7.550906 GGAGCAAAATGAGTGAACTTATACTCT 59.449 37.037 0.00 0.00 42.86 3.24
3397 6820 9.587772 GAGCAAAATGAGTGAACTTATACTCTA 57.412 33.333 0.00 0.00 42.86 2.43
3398 6821 9.944376 AGCAAAATGAGTGAACTTATACTCTAA 57.056 29.630 0.00 0.00 42.86 2.10
3403 6826 8.950208 ATGAGTGAACTTATACTCTAAAAGGC 57.050 34.615 0.00 0.00 42.86 4.35
3404 6827 7.033791 TGAGTGAACTTATACTCTAAAAGGCG 58.966 38.462 0.00 0.00 42.86 5.52
3405 6828 6.932947 AGTGAACTTATACTCTAAAAGGCGT 58.067 36.000 0.00 0.00 0.00 5.68
3406 6829 7.034397 AGTGAACTTATACTCTAAAAGGCGTC 58.966 38.462 0.00 0.00 0.00 5.19
3407 6830 7.034397 GTGAACTTATACTCTAAAAGGCGTCT 58.966 38.462 0.00 0.00 0.00 4.18
3408 6831 8.186821 GTGAACTTATACTCTAAAAGGCGTCTA 58.813 37.037 0.00 0.00 0.00 2.59
3409 6832 8.910944 TGAACTTATACTCTAAAAGGCGTCTAT 58.089 33.333 0.00 0.00 0.00 1.98
3417 6840 7.828712 ACTCTAAAAGGCGTCTATATACATCC 58.171 38.462 0.00 0.00 0.00 3.51
3418 6841 6.849502 TCTAAAAGGCGTCTATATACATCCG 58.150 40.000 0.00 0.00 0.00 4.18
3419 6842 5.717078 AAAAGGCGTCTATATACATCCGA 57.283 39.130 0.00 0.00 0.00 4.55
3420 6843 5.717078 AAAGGCGTCTATATACATCCGAA 57.283 39.130 0.00 0.00 0.00 4.30
3421 6844 5.916661 AAGGCGTCTATATACATCCGAAT 57.083 39.130 0.00 0.00 0.00 3.34
3422 6845 5.250235 AGGCGTCTATATACATCCGAATG 57.750 43.478 0.00 0.00 38.93 2.67
3437 6860 7.753659 ACATCCGAATGTAGTCTCTATAATCG 58.246 38.462 0.00 4.75 44.38 3.34
3438 6861 7.606839 ACATCCGAATGTAGTCTCTATAATCGA 59.393 37.037 10.79 0.00 44.38 3.59
3439 6862 7.361889 TCCGAATGTAGTCTCTATAATCGAC 57.638 40.000 10.79 0.00 0.00 4.20
3440 6863 7.160049 TCCGAATGTAGTCTCTATAATCGACT 58.840 38.462 10.79 0.00 40.74 4.18
3441 6864 8.309656 TCCGAATGTAGTCTCTATAATCGACTA 58.690 37.037 10.79 0.00 38.77 2.59
3442 6865 8.933807 CCGAATGTAGTCTCTATAATCGACTAA 58.066 37.037 10.79 0.00 40.68 2.24
3443 6866 9.743937 CGAATGTAGTCTCTATAATCGACTAAC 57.256 37.037 5.51 0.00 40.68 2.34
3446 6869 9.999660 ATGTAGTCTCTATAATCGACTAACTGA 57.000 33.333 0.00 0.00 40.68 3.41
3447 6870 9.258826 TGTAGTCTCTATAATCGACTAACTGAC 57.741 37.037 0.00 0.00 40.68 3.51
3448 6871 9.258826 GTAGTCTCTATAATCGACTAACTGACA 57.741 37.037 0.00 0.00 40.68 3.58
3449 6872 8.145316 AGTCTCTATAATCGACTAACTGACAC 57.855 38.462 0.00 0.00 36.33 3.67
3450 6873 7.769507 AGTCTCTATAATCGACTAACTGACACA 59.230 37.037 0.00 0.00 36.33 3.72
3451 6874 8.065407 GTCTCTATAATCGACTAACTGACACAG 58.935 40.741 0.00 0.00 37.52 3.66
3452 6875 7.226918 TCTCTATAATCGACTAACTGACACAGG 59.773 40.741 0.00 0.00 35.51 4.00
3453 6876 5.916661 ATAATCGACTAACTGACACAGGT 57.083 39.130 0.00 0.00 35.51 4.00
3454 6877 7.989170 TCTATAATCGACTAACTGACACAGGTA 59.011 37.037 0.00 0.00 35.51 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.137872 CCATGTTCTCCTCCTTCTCCG 59.862 57.143 0.00 0.00 0.00 4.63
35 36 0.915364 GGCCATGTTCTCCTCCTTCT 59.085 55.000 0.00 0.00 0.00 2.85
36 37 0.462759 CGGCCATGTTCTCCTCCTTC 60.463 60.000 2.24 0.00 0.00 3.46
37 38 1.604378 CGGCCATGTTCTCCTCCTT 59.396 57.895 2.24 0.00 0.00 3.36
56 60 2.060980 AGATCCACGCCCTCCTGAC 61.061 63.158 0.00 0.00 0.00 3.51
83 87 0.948141 GCTCATGCTCTGGGTATCGC 60.948 60.000 0.00 0.00 36.03 4.58
97 101 1.612726 GCAACTGACTTGGGAGCTCAT 60.613 52.381 17.19 0.00 0.00 2.90
281 285 2.741985 CGCACAAGGCATCCGTCA 60.742 61.111 0.00 0.00 45.17 4.35
478 482 0.889186 TTGCCTTTGTCCTCTTCGGC 60.889 55.000 0.00 0.00 38.01 5.54
483 487 2.800250 CTGGATTTGCCTTTGTCCTCT 58.200 47.619 0.00 0.00 37.63 3.69
687 715 2.523168 TGGACAGTCGCCTGGTCA 60.523 61.111 0.00 0.00 43.36 4.02
709 737 1.401148 CGTGGTACTCTGGTTCTCGTG 60.401 57.143 0.00 0.00 0.00 4.35
728 756 2.430694 TCAACCATCTCCATGTACTCCG 59.569 50.000 0.00 0.00 0.00 4.63
745 773 3.881688 CCTTCATCTGTCATGGGATCAAC 59.118 47.826 0.00 0.00 0.00 3.18
803 831 1.304052 CTTGAATTGCCCCCGTCCA 60.304 57.895 0.00 0.00 0.00 4.02
804 832 2.710902 GCTTGAATTGCCCCCGTCC 61.711 63.158 0.00 0.00 0.00 4.79
805 833 1.937546 CTGCTTGAATTGCCCCCGTC 61.938 60.000 0.00 0.00 0.00 4.79
806 834 1.978617 CTGCTTGAATTGCCCCCGT 60.979 57.895 0.00 0.00 0.00 5.28
807 835 2.887360 CTGCTTGAATTGCCCCCG 59.113 61.111 0.00 0.00 0.00 5.73
808 836 2.580815 GCTGCTTGAATTGCCCCC 59.419 61.111 0.00 0.00 0.00 5.40
809 837 1.876497 TTCGCTGCTTGAATTGCCCC 61.876 55.000 0.00 0.00 0.00 5.80
810 838 0.457337 CTTCGCTGCTTGAATTGCCC 60.457 55.000 0.00 0.00 0.00 5.36
811 839 0.457337 CCTTCGCTGCTTGAATTGCC 60.457 55.000 0.00 0.00 0.00 4.52
812 840 1.074872 GCCTTCGCTGCTTGAATTGC 61.075 55.000 0.00 0.00 0.00 3.56
813 841 0.241749 TGCCTTCGCTGCTTGAATTG 59.758 50.000 0.00 0.00 35.36 2.32
814 842 0.961019 TTGCCTTCGCTGCTTGAATT 59.039 45.000 0.00 0.00 35.36 2.17
815 843 0.961019 TTTGCCTTCGCTGCTTGAAT 59.039 45.000 0.00 0.00 35.36 2.57
816 844 0.961019 ATTTGCCTTCGCTGCTTGAA 59.039 45.000 0.00 0.00 35.36 2.69
817 845 0.523072 GATTTGCCTTCGCTGCTTGA 59.477 50.000 0.00 0.00 35.36 3.02
818 846 0.241749 TGATTTGCCTTCGCTGCTTG 59.758 50.000 0.00 0.00 35.36 4.01
819 847 0.961019 TTGATTTGCCTTCGCTGCTT 59.039 45.000 0.00 0.00 35.36 3.91
820 848 0.524862 CTTGATTTGCCTTCGCTGCT 59.475 50.000 0.00 0.00 35.36 4.24
821 849 1.074872 GCTTGATTTGCCTTCGCTGC 61.075 55.000 0.00 0.00 35.36 5.25
822 850 0.241749 TGCTTGATTTGCCTTCGCTG 59.758 50.000 0.00 0.00 35.36 5.18
823 851 0.961019 TTGCTTGATTTGCCTTCGCT 59.039 45.000 0.00 0.00 35.36 4.93
824 852 1.657094 CATTGCTTGATTTGCCTTCGC 59.343 47.619 0.00 0.00 0.00 4.70
825 853 3.220507 TCATTGCTTGATTTGCCTTCG 57.779 42.857 0.00 0.00 0.00 3.79
826 854 3.930848 CCTTCATTGCTTGATTTGCCTTC 59.069 43.478 0.00 0.00 33.34 3.46
827 855 3.867216 GCCTTCATTGCTTGATTTGCCTT 60.867 43.478 0.00 0.00 33.34 4.35
828 856 2.354403 GCCTTCATTGCTTGATTTGCCT 60.354 45.455 0.00 0.00 33.34 4.75
829 857 2.004733 GCCTTCATTGCTTGATTTGCC 58.995 47.619 0.00 0.00 33.34 4.52
830 858 2.004733 GGCCTTCATTGCTTGATTTGC 58.995 47.619 0.00 0.00 33.34 3.68
831 859 3.322211 TGGCCTTCATTGCTTGATTTG 57.678 42.857 3.32 0.00 33.34 2.32
832 860 4.020039 TGATTGGCCTTCATTGCTTGATTT 60.020 37.500 3.32 0.00 33.34 2.17
833 861 3.516300 TGATTGGCCTTCATTGCTTGATT 59.484 39.130 3.32 0.00 33.34 2.57
834 862 3.101437 TGATTGGCCTTCATTGCTTGAT 58.899 40.909 3.32 0.00 33.34 2.57
835 863 2.527497 TGATTGGCCTTCATTGCTTGA 58.473 42.857 3.32 0.00 0.00 3.02
836 864 3.259064 CTTGATTGGCCTTCATTGCTTG 58.741 45.455 3.32 0.00 0.00 4.01
837 865 2.901839 ACTTGATTGGCCTTCATTGCTT 59.098 40.909 3.32 0.00 0.00 3.91
838 866 2.532843 ACTTGATTGGCCTTCATTGCT 58.467 42.857 3.32 0.00 0.00 3.91
839 867 3.731867 CGTACTTGATTGGCCTTCATTGC 60.732 47.826 3.32 1.04 0.00 3.56
840 868 3.181497 CCGTACTTGATTGGCCTTCATTG 60.181 47.826 3.32 6.31 0.00 2.82
841 869 3.016736 CCGTACTTGATTGGCCTTCATT 58.983 45.455 3.32 0.61 0.00 2.57
842 870 2.238646 TCCGTACTTGATTGGCCTTCAT 59.761 45.455 3.32 0.00 0.00 2.57
843 871 1.626321 TCCGTACTTGATTGGCCTTCA 59.374 47.619 3.32 4.35 0.00 3.02
844 872 2.093658 TCTCCGTACTTGATTGGCCTTC 60.094 50.000 3.32 1.19 0.00 3.46
845 873 1.906574 TCTCCGTACTTGATTGGCCTT 59.093 47.619 3.32 0.00 0.00 4.35
846 874 1.207329 GTCTCCGTACTTGATTGGCCT 59.793 52.381 3.32 0.00 0.00 5.19
847 875 1.653151 GTCTCCGTACTTGATTGGCC 58.347 55.000 0.00 0.00 0.00 5.36
848 876 1.278238 CGTCTCCGTACTTGATTGGC 58.722 55.000 0.00 0.00 0.00 4.52
849 877 1.278238 GCGTCTCCGTACTTGATTGG 58.722 55.000 0.00 0.00 36.15 3.16
850 878 1.990799 TGCGTCTCCGTACTTGATTG 58.009 50.000 0.00 0.00 36.15 2.67
851 879 2.540515 CATGCGTCTCCGTACTTGATT 58.459 47.619 0.00 0.00 36.15 2.57
852 880 1.802880 GCATGCGTCTCCGTACTTGAT 60.803 52.381 0.00 0.00 36.15 2.57
853 881 0.457853 GCATGCGTCTCCGTACTTGA 60.458 55.000 0.00 0.00 36.15 3.02
854 882 0.735978 TGCATGCGTCTCCGTACTTG 60.736 55.000 14.09 0.00 36.15 3.16
855 883 0.175760 ATGCATGCGTCTCCGTACTT 59.824 50.000 14.09 0.00 36.15 2.24
856 884 0.249073 GATGCATGCGTCTCCGTACT 60.249 55.000 28.82 0.00 36.15 2.73
857 885 1.540607 CGATGCATGCGTCTCCGTAC 61.541 60.000 31.52 9.93 36.15 3.67
858 886 1.299089 CGATGCATGCGTCTCCGTA 60.299 57.895 31.52 5.45 36.15 4.02
859 887 2.583319 CGATGCATGCGTCTCCGT 60.583 61.111 31.52 5.07 36.15 4.69
860 888 2.278792 TCGATGCATGCGTCTCCG 60.279 61.111 31.52 22.00 37.07 4.63
861 889 1.953138 CCTCGATGCATGCGTCTCC 60.953 63.158 31.52 11.98 0.00 3.71
862 890 1.953138 CCCTCGATGCATGCGTCTC 60.953 63.158 31.52 18.54 0.00 3.36
863 891 2.107750 CCCTCGATGCATGCGTCT 59.892 61.111 31.52 12.20 0.00 4.18
864 892 2.202932 ACCCTCGATGCATGCGTC 60.203 61.111 26.87 26.87 0.00 5.19
865 893 2.315781 ATCACCCTCGATGCATGCGT 62.316 55.000 13.43 13.43 0.00 5.24
866 894 1.596203 ATCACCCTCGATGCATGCG 60.596 57.895 14.09 8.11 0.00 4.73
867 895 1.512996 CCATCACCCTCGATGCATGC 61.513 60.000 11.82 11.82 41.27 4.06
868 896 0.107268 TCCATCACCCTCGATGCATG 59.893 55.000 2.46 0.00 41.27 4.06
869 897 0.107456 GTCCATCACCCTCGATGCAT 59.893 55.000 0.00 0.00 41.27 3.96
870 898 1.522092 GTCCATCACCCTCGATGCA 59.478 57.895 0.00 0.00 41.27 3.96
871 899 1.592669 CGTCCATCACCCTCGATGC 60.593 63.158 0.00 0.00 41.27 3.91
872 900 0.031314 CTCGTCCATCACCCTCGATG 59.969 60.000 0.00 0.00 42.09 3.84
873 901 1.109920 CCTCGTCCATCACCCTCGAT 61.110 60.000 0.00 0.00 0.00 3.59
874 902 1.753078 CCTCGTCCATCACCCTCGA 60.753 63.158 0.00 0.00 0.00 4.04
875 903 2.786495 CCCTCGTCCATCACCCTCG 61.786 68.421 0.00 0.00 0.00 4.63
876 904 3.095347 GCCCTCGTCCATCACCCTC 62.095 68.421 0.00 0.00 0.00 4.30
877 905 3.083997 GCCCTCGTCCATCACCCT 61.084 66.667 0.00 0.00 0.00 4.34
878 906 2.270874 ATTGCCCTCGTCCATCACCC 62.271 60.000 0.00 0.00 0.00 4.61
879 907 0.394352 AATTGCCCTCGTCCATCACC 60.394 55.000 0.00 0.00 0.00 4.02
880 908 1.017387 GAATTGCCCTCGTCCATCAC 58.983 55.000 0.00 0.00 0.00 3.06
881 909 0.617935 TGAATTGCCCTCGTCCATCA 59.382 50.000 0.00 0.00 0.00 3.07
882 910 1.672881 CTTGAATTGCCCTCGTCCATC 59.327 52.381 0.00 0.00 0.00 3.51
883 911 1.755179 CTTGAATTGCCCTCGTCCAT 58.245 50.000 0.00 0.00 0.00 3.41
884 912 0.960364 GCTTGAATTGCCCTCGTCCA 60.960 55.000 0.00 0.00 0.00 4.02
885 913 0.960364 TGCTTGAATTGCCCTCGTCC 60.960 55.000 0.00 0.00 0.00 4.79
886 914 0.881118 TTGCTTGAATTGCCCTCGTC 59.119 50.000 0.00 0.00 0.00 4.20
887 915 1.203052 CATTGCTTGAATTGCCCTCGT 59.797 47.619 0.00 0.00 0.00 4.18
888 916 1.473677 TCATTGCTTGAATTGCCCTCG 59.526 47.619 0.00 0.00 0.00 4.63
889 917 3.518590 CTTCATTGCTTGAATTGCCCTC 58.481 45.455 3.61 0.00 43.30 4.30
890 918 2.235402 CCTTCATTGCTTGAATTGCCCT 59.765 45.455 3.61 0.00 43.30 5.19
891 919 2.624636 CCTTCATTGCTTGAATTGCCC 58.375 47.619 3.61 0.00 43.30 5.36
892 920 2.004733 GCCTTCATTGCTTGAATTGCC 58.995 47.619 3.61 0.00 43.30 4.52
893 921 2.690786 TGCCTTCATTGCTTGAATTGC 58.309 42.857 13.04 13.04 43.30 3.56
894 922 5.410132 TGATTTGCCTTCATTGCTTGAATTG 59.590 36.000 3.61 1.06 43.30 2.32
895 923 5.553123 TGATTTGCCTTCATTGCTTGAATT 58.447 33.333 3.61 0.00 43.30 2.17
896 924 5.155278 TGATTTGCCTTCATTGCTTGAAT 57.845 34.783 3.61 0.00 43.30 2.57
897 925 4.603989 TGATTTGCCTTCATTGCTTGAA 57.396 36.364 3.23 3.23 42.09 2.69
898 926 4.562082 CTTGATTTGCCTTCATTGCTTGA 58.438 39.130 0.00 0.00 0.00 3.02
899 927 3.124636 GCTTGATTTGCCTTCATTGCTTG 59.875 43.478 0.00 0.00 0.00 4.01
900 928 3.244284 TGCTTGATTTGCCTTCATTGCTT 60.244 39.130 0.00 0.00 0.00 3.91
901 929 2.300723 TGCTTGATTTGCCTTCATTGCT 59.699 40.909 0.00 0.00 0.00 3.91
902 930 2.690786 TGCTTGATTTGCCTTCATTGC 58.309 42.857 0.00 0.00 0.00 3.56
903 931 3.122278 CGTTGCTTGATTTGCCTTCATTG 59.878 43.478 0.00 0.00 0.00 2.82
904 932 3.005684 TCGTTGCTTGATTTGCCTTCATT 59.994 39.130 0.00 0.00 0.00 2.57
905 933 2.557924 TCGTTGCTTGATTTGCCTTCAT 59.442 40.909 0.00 0.00 0.00 2.57
906 934 1.952990 TCGTTGCTTGATTTGCCTTCA 59.047 42.857 0.00 0.00 0.00 3.02
907 935 2.704725 TCGTTGCTTGATTTGCCTTC 57.295 45.000 0.00 0.00 0.00 3.46
908 936 3.383761 CTTTCGTTGCTTGATTTGCCTT 58.616 40.909 0.00 0.00 0.00 4.35
909 937 2.863704 GCTTTCGTTGCTTGATTTGCCT 60.864 45.455 0.00 0.00 0.00 4.75
910 938 1.456923 GCTTTCGTTGCTTGATTTGCC 59.543 47.619 0.00 0.00 0.00 4.52
911 939 2.126467 TGCTTTCGTTGCTTGATTTGC 58.874 42.857 0.00 0.00 0.00 3.68
912 940 4.775440 TTTGCTTTCGTTGCTTGATTTG 57.225 36.364 0.00 0.00 0.00 2.32
913 941 5.049167 TGATTTGCTTTCGTTGCTTGATTT 58.951 33.333 0.00 0.00 0.00 2.17
914 942 4.619973 TGATTTGCTTTCGTTGCTTGATT 58.380 34.783 0.00 0.00 0.00 2.57
915 943 4.241590 TGATTTGCTTTCGTTGCTTGAT 57.758 36.364 0.00 0.00 0.00 2.57
916 944 3.706802 TGATTTGCTTTCGTTGCTTGA 57.293 38.095 0.00 0.00 0.00 3.02
917 945 3.362304 GCTTGATTTGCTTTCGTTGCTTG 60.362 43.478 0.00 0.00 0.00 4.01
918 946 2.796593 GCTTGATTTGCTTTCGTTGCTT 59.203 40.909 0.00 0.00 0.00 3.91
919 947 2.223782 TGCTTGATTTGCTTTCGTTGCT 60.224 40.909 0.00 0.00 0.00 3.91
920 948 2.097250 GTGCTTGATTTGCTTTCGTTGC 60.097 45.455 0.00 0.00 0.00 4.17
921 949 3.114809 TGTGCTTGATTTGCTTTCGTTG 58.885 40.909 0.00 0.00 0.00 4.10
922 950 3.435105 TGTGCTTGATTTGCTTTCGTT 57.565 38.095 0.00 0.00 0.00 3.85
923 951 3.435105 TTGTGCTTGATTTGCTTTCGT 57.565 38.095 0.00 0.00 0.00 3.85
924 952 3.182972 CCTTTGTGCTTGATTTGCTTTCG 59.817 43.478 0.00 0.00 0.00 3.46
925 953 3.059393 GCCTTTGTGCTTGATTTGCTTTC 60.059 43.478 0.00 0.00 0.00 2.62
926 954 2.874086 GCCTTTGTGCTTGATTTGCTTT 59.126 40.909 0.00 0.00 0.00 3.51
927 955 2.158928 TGCCTTTGTGCTTGATTTGCTT 60.159 40.909 0.00 0.00 0.00 3.91
928 956 1.413445 TGCCTTTGTGCTTGATTTGCT 59.587 42.857 0.00 0.00 0.00 3.91
929 957 1.796459 CTGCCTTTGTGCTTGATTTGC 59.204 47.619 0.00 0.00 0.00 3.68
930 958 2.798283 CACTGCCTTTGTGCTTGATTTG 59.202 45.455 0.00 0.00 0.00 2.32
931 959 2.224113 CCACTGCCTTTGTGCTTGATTT 60.224 45.455 0.00 0.00 34.38 2.17
932 960 1.342174 CCACTGCCTTTGTGCTTGATT 59.658 47.619 0.00 0.00 34.38 2.57
933 961 0.963962 CCACTGCCTTTGTGCTTGAT 59.036 50.000 0.00 0.00 34.38 2.57
934 962 0.395586 ACCACTGCCTTTGTGCTTGA 60.396 50.000 0.00 0.00 34.38 3.02
935 963 0.249155 CACCACTGCCTTTGTGCTTG 60.249 55.000 0.00 0.00 34.38 4.01
936 964 0.395586 TCACCACTGCCTTTGTGCTT 60.396 50.000 0.00 0.00 34.38 3.91
937 965 0.178981 ATCACCACTGCCTTTGTGCT 60.179 50.000 0.00 0.00 34.38 4.40
938 966 0.038892 CATCACCACTGCCTTTGTGC 60.039 55.000 0.00 0.00 34.38 4.57
939 967 0.599558 CCATCACCACTGCCTTTGTG 59.400 55.000 0.00 0.00 35.39 3.33
940 968 0.185901 ACCATCACCACTGCCTTTGT 59.814 50.000 0.00 0.00 0.00 2.83
941 969 0.599558 CACCATCACCACTGCCTTTG 59.400 55.000 0.00 0.00 0.00 2.77
942 970 1.181098 GCACCATCACCACTGCCTTT 61.181 55.000 0.00 0.00 0.00 3.11
943 971 1.604593 GCACCATCACCACTGCCTT 60.605 57.895 0.00 0.00 0.00 4.35
944 972 2.034687 GCACCATCACCACTGCCT 59.965 61.111 0.00 0.00 0.00 4.75
945 973 2.034687 AGCACCATCACCACTGCC 59.965 61.111 0.00 0.00 0.00 4.85
946 974 2.338015 CCAGCACCATCACCACTGC 61.338 63.158 0.00 0.00 0.00 4.40
947 975 0.034767 ATCCAGCACCATCACCACTG 60.035 55.000 0.00 0.00 0.00 3.66
948 976 0.700564 AATCCAGCACCATCACCACT 59.299 50.000 0.00 0.00 0.00 4.00
949 977 1.098050 GAATCCAGCACCATCACCAC 58.902 55.000 0.00 0.00 0.00 4.16
950 978 0.034186 GGAATCCAGCACCATCACCA 60.034 55.000 0.00 0.00 0.00 4.17
951 979 1.097547 CGGAATCCAGCACCATCACC 61.098 60.000 0.00 0.00 0.00 4.02
952 980 0.107703 TCGGAATCCAGCACCATCAC 60.108 55.000 0.00 0.00 0.00 3.06
953 981 0.839277 ATCGGAATCCAGCACCATCA 59.161 50.000 0.00 0.00 0.00 3.07
954 982 1.202687 TCATCGGAATCCAGCACCATC 60.203 52.381 0.00 0.00 0.00 3.51
955 983 0.839277 TCATCGGAATCCAGCACCAT 59.161 50.000 0.00 0.00 0.00 3.55
956 984 0.178767 CTCATCGGAATCCAGCACCA 59.821 55.000 0.00 0.00 0.00 4.17
957 985 0.533755 CCTCATCGGAATCCAGCACC 60.534 60.000 0.00 0.00 33.16 5.01
958 986 0.465705 TCCTCATCGGAATCCAGCAC 59.534 55.000 0.00 0.00 39.40 4.40
959 987 0.755079 CTCCTCATCGGAATCCAGCA 59.245 55.000 0.00 0.00 42.53 4.41
960 988 0.602372 GCTCCTCATCGGAATCCAGC 60.602 60.000 0.00 0.00 42.53 4.85
961 989 0.755079 TGCTCCTCATCGGAATCCAG 59.245 55.000 0.00 0.00 42.53 3.86
962 990 1.071228 CATGCTCCTCATCGGAATCCA 59.929 52.381 0.00 0.00 42.53 3.41
963 991 1.345741 TCATGCTCCTCATCGGAATCC 59.654 52.381 0.00 0.00 42.53 3.01
964 992 2.827800 TCATGCTCCTCATCGGAATC 57.172 50.000 0.00 0.00 42.53 2.52
965 993 2.437281 ACTTCATGCTCCTCATCGGAAT 59.563 45.455 0.00 0.00 42.53 3.01
966 994 1.833630 ACTTCATGCTCCTCATCGGAA 59.166 47.619 0.00 0.00 42.53 4.30
967 995 1.137675 CACTTCATGCTCCTCATCGGA 59.862 52.381 0.00 0.00 40.30 4.55
968 996 1.579698 CACTTCATGCTCCTCATCGG 58.420 55.000 0.00 0.00 31.79 4.18
977 1005 5.820964 GGTCATACCCTGCACTTCATGCT 62.821 52.174 0.01 0.00 43.38 3.79
978 1006 3.581396 GGTCATACCCTGCACTTCATGC 61.581 54.545 0.00 0.00 43.32 4.06
979 1007 2.292267 GGTCATACCCTGCACTTCATG 58.708 52.381 0.00 0.00 30.04 3.07
980 1008 1.915489 TGGTCATACCCTGCACTTCAT 59.085 47.619 0.00 0.00 37.50 2.57
981 1009 1.357137 TGGTCATACCCTGCACTTCA 58.643 50.000 0.00 0.00 37.50 3.02
982 1010 2.292267 CATGGTCATACCCTGCACTTC 58.708 52.381 0.00 0.00 37.50 3.01
983 1011 1.064463 CCATGGTCATACCCTGCACTT 60.064 52.381 2.57 0.00 37.50 3.16
984 1012 0.548031 CCATGGTCATACCCTGCACT 59.452 55.000 2.57 0.00 37.50 4.40
985 1013 0.546122 TCCATGGTCATACCCTGCAC 59.454 55.000 12.58 0.00 37.50 4.57
986 1014 0.839277 CTCCATGGTCATACCCTGCA 59.161 55.000 12.58 0.00 37.50 4.41
987 1015 1.131638 TCTCCATGGTCATACCCTGC 58.868 55.000 12.58 0.00 37.50 4.85
988 1016 2.551721 GCATCTCCATGGTCATACCCTG 60.552 54.545 12.58 1.12 37.50 4.45
989 1017 1.701847 GCATCTCCATGGTCATACCCT 59.298 52.381 12.58 0.00 37.50 4.34
990 1018 1.609061 CGCATCTCCATGGTCATACCC 60.609 57.143 12.58 0.00 37.50 3.69
991 1019 1.800805 CGCATCTCCATGGTCATACC 58.199 55.000 12.58 0.00 39.22 2.73
992 1020 1.151668 GCGCATCTCCATGGTCATAC 58.848 55.000 12.58 0.00 0.00 2.39
993 1021 0.758123 TGCGCATCTCCATGGTCATA 59.242 50.000 5.66 0.00 0.00 2.15
994 1022 0.107066 TTGCGCATCTCCATGGTCAT 60.107 50.000 12.75 1.75 0.00 3.06
995 1023 0.322366 TTTGCGCATCTCCATGGTCA 60.322 50.000 12.75 0.00 0.00 4.02
996 1024 1.027357 ATTTGCGCATCTCCATGGTC 58.973 50.000 12.75 0.00 0.00 4.02
997 1025 2.346766 TATTTGCGCATCTCCATGGT 57.653 45.000 12.75 0.00 0.00 3.55
998 1026 3.928727 AATATTTGCGCATCTCCATGG 57.071 42.857 12.75 4.97 0.00 3.66
999 1027 4.862350 TCAAATATTTGCGCATCTCCATG 58.138 39.130 21.15 7.66 38.05 3.66
1000 1028 5.300034 TCTTCAAATATTTGCGCATCTCCAT 59.700 36.000 21.15 1.14 38.05 3.41
1041 3159 1.074850 CTTCCCCTCCTCCTCCTCC 60.075 68.421 0.00 0.00 0.00 4.30
1164 3285 4.529769 TGATGTGAGACAGAGATCCAGTTT 59.470 41.667 0.00 0.00 0.00 2.66
1166 3287 3.700539 CTGATGTGAGACAGAGATCCAGT 59.299 47.826 0.00 0.00 36.38 4.00
1167 3288 3.068448 CCTGATGTGAGACAGAGATCCAG 59.932 52.174 0.00 0.00 36.38 3.86
1171 3292 4.544683 TCATCCTGATGTGAGACAGAGAT 58.455 43.478 7.00 0.00 39.72 2.75
1172 3293 3.973425 TCATCCTGATGTGAGACAGAGA 58.027 45.455 7.00 0.00 39.72 3.10
1173 3294 4.940905 ATCATCCTGATGTGAGACAGAG 57.059 45.455 7.00 0.00 35.43 3.35
1174 3295 5.303845 CCTTATCATCCTGATGTGAGACAGA 59.696 44.000 7.00 0.00 37.70 3.41
1175 3296 5.303845 TCCTTATCATCCTGATGTGAGACAG 59.696 44.000 7.00 0.00 37.70 3.51
1176 3297 5.069648 GTCCTTATCATCCTGATGTGAGACA 59.930 44.000 7.00 0.00 37.70 3.41
1177 3298 5.069648 TGTCCTTATCATCCTGATGTGAGAC 59.930 44.000 7.00 8.52 37.70 3.36
1178 3299 5.069648 GTGTCCTTATCATCCTGATGTGAGA 59.930 44.000 7.00 0.00 37.70 3.27
1179 3300 5.295950 GTGTCCTTATCATCCTGATGTGAG 58.704 45.833 7.00 4.31 37.70 3.51
1180 3301 4.202151 CGTGTCCTTATCATCCTGATGTGA 60.202 45.833 7.00 0.00 37.70 3.58
1181 3302 4.053983 CGTGTCCTTATCATCCTGATGTG 58.946 47.826 7.00 0.00 37.70 3.21
1182 3303 3.493350 GCGTGTCCTTATCATCCTGATGT 60.493 47.826 7.00 0.00 37.70 3.06
1183 3304 3.062763 GCGTGTCCTTATCATCCTGATG 58.937 50.000 0.55 0.55 37.70 3.07
1185 3306 1.412710 GGCGTGTCCTTATCATCCTGA 59.587 52.381 0.00 0.00 0.00 3.86
1192 3313 1.737793 CCAGTTTGGCGTGTCCTTATC 59.262 52.381 0.00 0.00 35.26 1.75
1194 3315 0.759959 TCCAGTTTGGCGTGTCCTTA 59.240 50.000 0.00 0.00 37.47 2.69
1196 3317 0.321653 GATCCAGTTTGGCGTGTCCT 60.322 55.000 0.00 0.00 37.47 3.85
1197 3318 0.321653 AGATCCAGTTTGGCGTGTCC 60.322 55.000 0.00 0.00 37.47 4.02
1203 3324 2.027745 TGAGACAGAGATCCAGTTTGGC 60.028 50.000 0.00 0.00 37.47 4.52
1233 3369 0.337773 ACTCCATCTCCTCTGCCTCA 59.662 55.000 0.00 0.00 0.00 3.86
1252 3484 0.534203 GCAAACGACCTGTCCTCCAA 60.534 55.000 0.00 0.00 0.00 3.53
1284 3516 1.831286 CCATGCAGATTCCCAGCCC 60.831 63.158 0.00 0.00 0.00 5.19
1327 3562 8.983702 ATGGGTGTTTAAGTTTACTTACTCAA 57.016 30.769 1.93 0.00 38.09 3.02
1415 3652 1.893801 GACTGAAGGAAGGAAGGACGA 59.106 52.381 0.00 0.00 0.00 4.20
1481 3723 2.093869 AGGCTGCAGCACCAAATTAATG 60.094 45.455 37.63 0.00 44.36 1.90
1967 4300 0.102481 CTTCACGATCACCGGGGTAG 59.898 60.000 2.12 0.00 43.16 3.18
2025 4361 8.033038 TGTAAGTCGCTCAAAACATAACTCTAT 58.967 33.333 0.00 0.00 0.00 1.98
2034 4370 4.034742 GGTTTCTGTAAGTCGCTCAAAACA 59.965 41.667 0.00 0.00 33.76 2.83
2036 4372 3.246699 CGGTTTCTGTAAGTCGCTCAAAA 59.753 43.478 0.00 0.00 33.76 2.44
2440 4788 5.530543 CCTTCTTAGAGGATTTCCATCTTGC 59.469 44.000 0.00 0.00 39.25 4.01
2475 5867 2.016318 CAAGAATAGCATCCACGCCAA 58.984 47.619 0.00 0.00 0.00 4.52
2480 5872 5.412594 TCAACAAGACAAGAATAGCATCCAC 59.587 40.000 0.00 0.00 0.00 4.02
2491 5883 2.432874 TCCTCCGTTCAACAAGACAAGA 59.567 45.455 0.00 0.00 0.00 3.02
2492 5884 2.833794 TCCTCCGTTCAACAAGACAAG 58.166 47.619 0.00 0.00 0.00 3.16
2493 5885 2.992124 TCCTCCGTTCAACAAGACAA 57.008 45.000 0.00 0.00 0.00 3.18
2494 5886 3.138304 CAATCCTCCGTTCAACAAGACA 58.862 45.455 0.00 0.00 0.00 3.41
2495 5887 3.058914 CACAATCCTCCGTTCAACAAGAC 60.059 47.826 0.00 0.00 0.00 3.01
2496 5888 3.138304 CACAATCCTCCGTTCAACAAGA 58.862 45.455 0.00 0.00 0.00 3.02
2497 5889 2.226437 CCACAATCCTCCGTTCAACAAG 59.774 50.000 0.00 0.00 0.00 3.16
2498 5890 2.226330 CCACAATCCTCCGTTCAACAA 58.774 47.619 0.00 0.00 0.00 2.83
2499 5891 1.142060 ACCACAATCCTCCGTTCAACA 59.858 47.619 0.00 0.00 0.00 3.33
2500 5892 1.892209 ACCACAATCCTCCGTTCAAC 58.108 50.000 0.00 0.00 0.00 3.18
2501 5893 3.992943 ATACCACAATCCTCCGTTCAA 57.007 42.857 0.00 0.00 0.00 2.69
2502 5894 5.104693 ACAATATACCACAATCCTCCGTTCA 60.105 40.000 0.00 0.00 0.00 3.18
2503 5895 5.365619 ACAATATACCACAATCCTCCGTTC 58.634 41.667 0.00 0.00 0.00 3.95
2504 5896 5.367945 ACAATATACCACAATCCTCCGTT 57.632 39.130 0.00 0.00 0.00 4.44
2505 5897 5.104693 TCAACAATATACCACAATCCTCCGT 60.105 40.000 0.00 0.00 0.00 4.69
2506 5898 5.364778 TCAACAATATACCACAATCCTCCG 58.635 41.667 0.00 0.00 0.00 4.63
2507 5899 7.054124 TCTTCAACAATATACCACAATCCTCC 58.946 38.462 0.00 0.00 0.00 4.30
2508 5900 8.682936 ATCTTCAACAATATACCACAATCCTC 57.317 34.615 0.00 0.00 0.00 3.71
2509 5901 8.906867 CAATCTTCAACAATATACCACAATCCT 58.093 33.333 0.00 0.00 0.00 3.24
2510 5902 8.137437 CCAATCTTCAACAATATACCACAATCC 58.863 37.037 0.00 0.00 0.00 3.01
2511 5903 8.686334 ACCAATCTTCAACAATATACCACAATC 58.314 33.333 0.00 0.00 0.00 2.67
2512 5904 8.469200 CACCAATCTTCAACAATATACCACAAT 58.531 33.333 0.00 0.00 0.00 2.71
2513 5905 7.667635 TCACCAATCTTCAACAATATACCACAA 59.332 33.333 0.00 0.00 0.00 3.33
2514 5906 7.171653 TCACCAATCTTCAACAATATACCACA 58.828 34.615 0.00 0.00 0.00 4.17
2515 5907 7.624360 TCACCAATCTTCAACAATATACCAC 57.376 36.000 0.00 0.00 0.00 4.16
2516 5908 8.821686 AATCACCAATCTTCAACAATATACCA 57.178 30.769 0.00 0.00 0.00 3.25
2517 5909 9.125026 AGAATCACCAATCTTCAACAATATACC 57.875 33.333 0.00 0.00 0.00 2.73
2521 5913 8.677300 GCTTAGAATCACCAATCTTCAACAATA 58.323 33.333 0.00 0.00 0.00 1.90
2522 5914 7.363268 GGCTTAGAATCACCAATCTTCAACAAT 60.363 37.037 0.00 0.00 0.00 2.71
2523 5915 6.071952 GGCTTAGAATCACCAATCTTCAACAA 60.072 38.462 0.00 0.00 0.00 2.83
2524 5916 5.415701 GGCTTAGAATCACCAATCTTCAACA 59.584 40.000 0.00 0.00 0.00 3.33
2525 5917 5.415701 TGGCTTAGAATCACCAATCTTCAAC 59.584 40.000 0.00 0.00 0.00 3.18
2526 5918 5.415701 GTGGCTTAGAATCACCAATCTTCAA 59.584 40.000 0.00 0.00 33.03 2.69
2527 5919 4.943705 GTGGCTTAGAATCACCAATCTTCA 59.056 41.667 0.00 0.00 33.03 3.02
2528 5920 5.491635 GTGGCTTAGAATCACCAATCTTC 57.508 43.478 0.00 0.00 33.03 2.87
2536 5928 3.691609 CCTTTCTGGTGGCTTAGAATCAC 59.308 47.826 0.00 0.00 33.34 3.06
2537 5929 3.587061 TCCTTTCTGGTGGCTTAGAATCA 59.413 43.478 0.00 0.00 33.34 2.57
2538 5930 3.942115 GTCCTTTCTGGTGGCTTAGAATC 59.058 47.826 0.00 0.00 33.34 2.52
2539 5931 3.308473 GGTCCTTTCTGGTGGCTTAGAAT 60.308 47.826 0.00 0.00 33.34 2.40
2540 5932 2.039879 GGTCCTTTCTGGTGGCTTAGAA 59.960 50.000 0.00 0.00 37.07 2.10
2541 5933 1.628846 GGTCCTTTCTGGTGGCTTAGA 59.371 52.381 0.00 0.00 37.07 2.10
2542 5934 1.676014 CGGTCCTTTCTGGTGGCTTAG 60.676 57.143 0.00 0.00 37.07 2.18
2543 5935 0.323629 CGGTCCTTTCTGGTGGCTTA 59.676 55.000 0.00 0.00 37.07 3.09
2544 5936 1.073199 CGGTCCTTTCTGGTGGCTT 59.927 57.895 0.00 0.00 37.07 4.35
2545 5937 1.705997 AACGGTCCTTTCTGGTGGCT 61.706 55.000 0.00 0.00 37.07 4.75
2546 5938 1.228154 AACGGTCCTTTCTGGTGGC 60.228 57.895 0.00 0.00 37.07 5.01
2547 5939 1.515521 GCAACGGTCCTTTCTGGTGG 61.516 60.000 0.00 0.00 37.07 4.61
2548 5940 0.535102 AGCAACGGTCCTTTCTGGTG 60.535 55.000 0.00 0.00 37.07 4.17
2549 5941 0.182775 AAGCAACGGTCCTTTCTGGT 59.817 50.000 0.00 0.00 37.07 4.00
2550 5942 0.593128 CAAGCAACGGTCCTTTCTGG 59.407 55.000 0.00 0.00 37.10 3.86
2551 5943 1.308998 ACAAGCAACGGTCCTTTCTG 58.691 50.000 0.00 0.00 0.00 3.02
2552 5944 1.676006 CAACAAGCAACGGTCCTTTCT 59.324 47.619 0.00 0.00 0.00 2.52
2553 5945 1.673920 TCAACAAGCAACGGTCCTTTC 59.326 47.619 0.00 0.00 0.00 2.62
2554 5946 1.757682 TCAACAAGCAACGGTCCTTT 58.242 45.000 0.00 0.00 0.00 3.11
2555 5947 1.676006 CTTCAACAAGCAACGGTCCTT 59.324 47.619 0.00 0.00 0.00 3.36
2556 5948 1.134220 TCTTCAACAAGCAACGGTCCT 60.134 47.619 0.00 0.00 0.00 3.85
2557 5949 1.305201 TCTTCAACAAGCAACGGTCC 58.695 50.000 0.00 0.00 0.00 4.46
2558 5950 3.243068 ACAATCTTCAACAAGCAACGGTC 60.243 43.478 0.00 0.00 0.00 4.79
2559 5951 2.687935 ACAATCTTCAACAAGCAACGGT 59.312 40.909 0.00 0.00 0.00 4.83
2560 5952 3.044986 CACAATCTTCAACAAGCAACGG 58.955 45.455 0.00 0.00 0.00 4.44
2561 5953 3.044986 CCACAATCTTCAACAAGCAACG 58.955 45.455 0.00 0.00 0.00 4.10
2562 5954 4.045636 ACCACAATCTTCAACAAGCAAC 57.954 40.909 0.00 0.00 0.00 4.17
2563 5955 5.048083 GGATACCACAATCTTCAACAAGCAA 60.048 40.000 0.00 0.00 0.00 3.91
2564 5956 4.458989 GGATACCACAATCTTCAACAAGCA 59.541 41.667 0.00 0.00 0.00 3.91
2565 5957 4.702131 AGGATACCACAATCTTCAACAAGC 59.298 41.667 0.00 0.00 37.17 4.01
2566 5958 6.176183 AGAGGATACCACAATCTTCAACAAG 58.824 40.000 0.00 0.00 35.12 3.16
2567 5959 6.126863 AGAGGATACCACAATCTTCAACAA 57.873 37.500 0.00 0.00 35.12 2.83
2568 5960 5.762179 AGAGGATACCACAATCTTCAACA 57.238 39.130 0.00 0.00 35.12 3.33
2569 5961 7.556844 TCTTAGAGGATACCACAATCTTCAAC 58.443 38.462 0.00 0.00 35.12 3.18
2570 5962 7.733773 TCTTAGAGGATACCACAATCTTCAA 57.266 36.000 0.00 0.00 35.12 2.69
2571 5963 7.619698 TCTTCTTAGAGGATACCACAATCTTCA 59.380 37.037 0.00 0.00 35.12 3.02
2572 5964 8.012957 TCTTCTTAGAGGATACCACAATCTTC 57.987 38.462 0.00 0.00 33.39 2.87
2573 5965 7.979786 TCTTCTTAGAGGATACCACAATCTT 57.020 36.000 0.00 0.00 37.17 2.40
2574 5966 8.428063 CAATCTTCTTAGAGGATACCACAATCT 58.572 37.037 7.27 0.00 32.92 2.40
2575 5967 7.659390 CCAATCTTCTTAGAGGATACCACAATC 59.341 40.741 7.27 0.00 32.92 2.67
2576 5968 7.127955 ACCAATCTTCTTAGAGGATACCACAAT 59.872 37.037 7.27 0.00 32.92 2.71
2577 5969 6.443849 ACCAATCTTCTTAGAGGATACCACAA 59.556 38.462 7.27 0.00 32.92 3.33
2578 5970 5.964477 ACCAATCTTCTTAGAGGATACCACA 59.036 40.000 7.27 0.00 32.92 4.17
2579 5971 6.098409 TCACCAATCTTCTTAGAGGATACCAC 59.902 42.308 7.27 0.00 32.92 4.16
2580 5972 6.202331 TCACCAATCTTCTTAGAGGATACCA 58.798 40.000 7.27 0.00 32.92 3.25
2581 5973 6.732896 TCACCAATCTTCTTAGAGGATACC 57.267 41.667 7.27 0.00 32.92 2.73
2582 5974 8.646900 AGAATCACCAATCTTCTTAGAGGATAC 58.353 37.037 7.27 0.00 32.92 2.24
2583 5975 8.789767 AGAATCACCAATCTTCTTAGAGGATA 57.210 34.615 7.27 0.00 32.92 2.59
2584 5976 7.688918 AGAATCACCAATCTTCTTAGAGGAT 57.311 36.000 0.73 0.73 32.92 3.24
2585 5977 8.609617 TTAGAATCACCAATCTTCTTAGAGGA 57.390 34.615 0.00 0.00 32.92 3.71
2586 5978 8.700051 TCTTAGAATCACCAATCTTCTTAGAGG 58.300 37.037 0.00 0.00 32.66 3.69
2589 5981 9.270640 CCATCTTAGAATCACCAATCTTCTTAG 57.729 37.037 0.00 0.00 31.89 2.18
2590 5982 8.992349 TCCATCTTAGAATCACCAATCTTCTTA 58.008 33.333 0.00 0.00 31.89 2.10
2591 5983 7.865820 TCCATCTTAGAATCACCAATCTTCTT 58.134 34.615 0.00 0.00 31.89 2.52
2592 5984 7.443302 TCCATCTTAGAATCACCAATCTTCT 57.557 36.000 0.00 0.00 33.91 2.85
2593 5985 8.511604 TTTCCATCTTAGAATCACCAATCTTC 57.488 34.615 0.00 0.00 0.00 2.87
2594 5986 9.129532 GATTTCCATCTTAGAATCACCAATCTT 57.870 33.333 0.00 0.00 0.00 2.40
2595 5987 7.723172 GGATTTCCATCTTAGAATCACCAATCT 59.277 37.037 0.00 0.00 35.64 2.40
2596 5988 7.723172 AGGATTTCCATCTTAGAATCACCAATC 59.277 37.037 0.00 0.00 38.89 2.67
2597 5989 7.589993 AGGATTTCCATCTTAGAATCACCAAT 58.410 34.615 0.00 0.00 38.89 3.16
2598 5990 6.973642 AGGATTTCCATCTTAGAATCACCAA 58.026 36.000 0.00 0.00 38.89 3.67
2599 5991 6.388100 AGAGGATTTCCATCTTAGAATCACCA 59.612 38.462 0.00 0.00 38.89 4.17
2600 5992 6.836242 AGAGGATTTCCATCTTAGAATCACC 58.164 40.000 0.00 0.00 38.89 4.02
2601 5993 9.487790 CTTAGAGGATTTCCATCTTAGAATCAC 57.512 37.037 0.00 0.00 38.89 3.06
2602 5994 9.439461 TCTTAGAGGATTTCCATCTTAGAATCA 57.561 33.333 0.00 0.00 38.89 2.57
2605 5997 8.709308 CCTTCTTAGAGGATTTCCATCTTAGAA 58.291 37.037 17.10 17.10 39.25 2.10
2606 5998 8.068110 TCCTTCTTAGAGGATTTCCATCTTAGA 58.932 37.037 0.00 5.37 40.87 2.10
2607 5999 8.256356 TCCTTCTTAGAGGATTTCCATCTTAG 57.744 38.462 0.00 3.38 40.87 2.18
2620 6012 4.631813 CCGTTCAACAATCCTTCTTAGAGG 59.368 45.833 0.00 0.00 38.20 3.69
2621 6013 5.479306 TCCGTTCAACAATCCTTCTTAGAG 58.521 41.667 0.00 0.00 0.00 2.43
2622 6014 5.477607 TCCGTTCAACAATCCTTCTTAGA 57.522 39.130 0.00 0.00 0.00 2.10
2623 6015 4.631813 CCTCCGTTCAACAATCCTTCTTAG 59.368 45.833 0.00 0.00 0.00 2.18
2624 6016 4.285003 TCCTCCGTTCAACAATCCTTCTTA 59.715 41.667 0.00 0.00 0.00 2.10
2625 6017 3.072476 TCCTCCGTTCAACAATCCTTCTT 59.928 43.478 0.00 0.00 0.00 2.52
2626 6018 2.637872 TCCTCCGTTCAACAATCCTTCT 59.362 45.455 0.00 0.00 0.00 2.85
2627 6019 3.053831 TCCTCCGTTCAACAATCCTTC 57.946 47.619 0.00 0.00 0.00 3.46
2628 6020 3.502123 TTCCTCCGTTCAACAATCCTT 57.498 42.857 0.00 0.00 0.00 3.36
2629 6021 3.009033 TCATTCCTCCGTTCAACAATCCT 59.991 43.478 0.00 0.00 0.00 3.24
2630 6022 3.343617 TCATTCCTCCGTTCAACAATCC 58.656 45.455 0.00 0.00 0.00 3.01
2631 6023 5.123820 TGAATCATTCCTCCGTTCAACAATC 59.876 40.000 0.00 0.00 0.00 2.67
2632 6024 5.009631 TGAATCATTCCTCCGTTCAACAAT 58.990 37.500 0.00 0.00 0.00 2.71
2633 6025 4.215399 GTGAATCATTCCTCCGTTCAACAA 59.785 41.667 0.00 0.00 31.38 2.83
2634 6026 3.751175 GTGAATCATTCCTCCGTTCAACA 59.249 43.478 0.00 0.00 31.38 3.33
2635 6027 3.751175 TGTGAATCATTCCTCCGTTCAAC 59.249 43.478 0.00 0.00 31.38 3.18
2636 6028 3.751175 GTGTGAATCATTCCTCCGTTCAA 59.249 43.478 0.00 0.00 31.38 2.69
2637 6029 3.334691 GTGTGAATCATTCCTCCGTTCA 58.665 45.455 0.00 0.00 0.00 3.18
2638 6030 2.678336 GGTGTGAATCATTCCTCCGTTC 59.322 50.000 0.00 0.00 0.00 3.95
2639 6031 2.711542 GGTGTGAATCATTCCTCCGTT 58.288 47.619 0.00 0.00 0.00 4.44
2640 6032 1.405526 CGGTGTGAATCATTCCTCCGT 60.406 52.381 15.60 0.00 34.90 4.69
2641 6033 1.290203 CGGTGTGAATCATTCCTCCG 58.710 55.000 12.14 12.14 33.85 4.63
2642 6034 1.017387 GCGGTGTGAATCATTCCTCC 58.983 55.000 0.00 0.00 0.00 4.30
2643 6035 1.017387 GGCGGTGTGAATCATTCCTC 58.983 55.000 0.00 0.00 0.00 3.71
2644 6036 0.394352 GGGCGGTGTGAATCATTCCT 60.394 55.000 0.00 0.00 0.00 3.36
2645 6037 0.679640 TGGGCGGTGTGAATCATTCC 60.680 55.000 0.00 0.00 0.00 3.01
2646 6038 1.392589 ATGGGCGGTGTGAATCATTC 58.607 50.000 0.00 0.00 0.00 2.67
2647 6039 1.851304 AATGGGCGGTGTGAATCATT 58.149 45.000 0.00 0.00 0.00 2.57
2657 6049 3.366052 AGAACAGATAAAATGGGCGGT 57.634 42.857 0.00 0.00 0.00 5.68
2690 6083 0.240945 CATGGACAGTTTCGCAACCC 59.759 55.000 0.00 0.00 32.70 4.11
2750 6146 5.122512 AGTCGGATAACATTAGGTCGATG 57.877 43.478 0.00 0.00 0.00 3.84
2754 6150 7.307219 GCACAAATAGTCGGATAACATTAGGTC 60.307 40.741 0.00 0.00 0.00 3.85
2861 6257 9.850628 GTTGCTGACATTGCATATTCATAATAT 57.149 29.630 0.00 0.00 40.34 1.28
2862 6258 8.016801 CGTTGCTGACATTGCATATTCATAATA 58.983 33.333 0.00 0.00 40.34 0.98
2863 6259 6.859508 CGTTGCTGACATTGCATATTCATAAT 59.140 34.615 0.00 0.00 40.34 1.28
2864 6260 6.183360 ACGTTGCTGACATTGCATATTCATAA 60.183 34.615 0.00 0.00 40.34 1.90
2876 6273 6.017440 ACAAAACAGTATACGTTGCTGACATT 60.017 34.615 17.59 9.67 40.21 2.71
2884 6281 7.956508 TTCACAAACAAAACAGTATACGTTG 57.043 32.000 11.89 10.35 0.00 4.10
2923 6320 0.329261 CATCTTTCTGGTGGCTGGGA 59.671 55.000 0.00 0.00 0.00 4.37
2978 6375 2.041265 AGCCCATCCCGAGAAGGT 59.959 61.111 0.00 0.00 38.74 3.50
2988 6385 2.827642 GCACAGCCAGAGCCCATC 60.828 66.667 0.00 0.00 41.25 3.51
3030 6427 7.711339 AGAAATAGAGGATTACTAAAGCAACGG 59.289 37.037 0.00 0.00 0.00 4.44
3031 6428 8.649973 AGAAATAGAGGATTACTAAAGCAACG 57.350 34.615 0.00 0.00 0.00 4.10
3040 6437 9.145442 GTGGGTAACTAGAAATAGAGGATTACT 57.855 37.037 0.00 0.00 0.00 2.24
3041 6438 8.921205 TGTGGGTAACTAGAAATAGAGGATTAC 58.079 37.037 0.00 0.00 0.00 1.89
3122 6537 3.565482 CGAGCAACAAAGTGCCCATATAT 59.435 43.478 0.00 0.00 46.14 0.86
3185 6601 9.250246 AGAGAGATTTAGTATTGCCTATACTCC 57.750 37.037 10.79 2.58 44.97 3.85
3265 6688 2.025037 TCCTGCTGTGCCTATGGATTTT 60.025 45.455 0.00 0.00 0.00 1.82
3346 6769 6.197842 CCGTACGTAGTTTATTGTGGAATCTC 59.802 42.308 15.21 0.00 37.78 2.75
3352 6775 3.549070 GCTCCGTACGTAGTTTATTGTGG 59.451 47.826 15.21 0.00 37.78 4.17
3356 6779 6.591062 TCATTTTGCTCCGTACGTAGTTTATT 59.409 34.615 15.21 0.00 37.78 1.40
3366 6789 3.746492 AGTTCACTCATTTTGCTCCGTAC 59.254 43.478 0.00 0.00 0.00 3.67
3367 6790 4.002906 AGTTCACTCATTTTGCTCCGTA 57.997 40.909 0.00 0.00 0.00 4.02
3368 6791 2.851195 AGTTCACTCATTTTGCTCCGT 58.149 42.857 0.00 0.00 0.00 4.69
3369 6792 3.904136 AAGTTCACTCATTTTGCTCCG 57.096 42.857 0.00 0.00 0.00 4.63
3370 6793 7.550906 AGAGTATAAGTTCACTCATTTTGCTCC 59.449 37.037 16.02 0.00 42.99 4.70
3392 6815 7.361885 CGGATGTATATAGACGCCTTTTAGAGT 60.362 40.741 7.38 0.00 0.00 3.24
3395 6818 6.849502 TCGGATGTATATAGACGCCTTTTAG 58.150 40.000 7.38 0.00 0.00 1.85
3396 6819 6.822667 TCGGATGTATATAGACGCCTTTTA 57.177 37.500 7.38 0.00 0.00 1.52
3397 6820 5.717078 TCGGATGTATATAGACGCCTTTT 57.283 39.130 7.38 0.00 0.00 2.27
3398 6821 5.717078 TTCGGATGTATATAGACGCCTTT 57.283 39.130 7.38 0.00 0.00 3.11
3399 6822 5.185249 ACATTCGGATGTATATAGACGCCTT 59.815 40.000 7.81 0.00 44.51 4.35
3400 6823 4.705507 ACATTCGGATGTATATAGACGCCT 59.294 41.667 7.81 0.00 44.51 5.52
3401 6824 4.995124 ACATTCGGATGTATATAGACGCC 58.005 43.478 7.81 0.00 44.51 5.68
3402 6825 6.783162 ACTACATTCGGATGTATATAGACGC 58.217 40.000 16.89 0.00 45.20 5.19
3403 6826 8.199176 AGACTACATTCGGATGTATATAGACG 57.801 38.462 16.89 6.27 45.20 4.18
3404 6827 9.386010 AGAGACTACATTCGGATGTATATAGAC 57.614 37.037 16.89 7.71 45.20 2.59
3411 6834 8.880750 CGATTATAGAGACTACATTCGGATGTA 58.119 37.037 15.76 15.76 44.51 2.29
3413 6836 7.906010 GTCGATTATAGAGACTACATTCGGATG 59.094 40.741 0.88 0.88 34.56 3.51
3414 6837 7.825270 AGTCGATTATAGAGACTACATTCGGAT 59.175 37.037 0.00 0.00 42.71 4.18
3415 6838 7.160049 AGTCGATTATAGAGACTACATTCGGA 58.840 38.462 0.00 0.00 42.71 4.55
3416 6839 7.367159 AGTCGATTATAGAGACTACATTCGG 57.633 40.000 0.00 0.00 42.71 4.30
3417 6840 9.743937 GTTAGTCGATTATAGAGACTACATTCG 57.256 37.037 11.24 0.00 44.26 3.34
3420 6843 9.999660 TCAGTTAGTCGATTATAGAGACTACAT 57.000 33.333 11.24 4.06 44.26 2.29
3421 6844 9.258826 GTCAGTTAGTCGATTATAGAGACTACA 57.741 37.037 11.24 4.31 44.26 2.74
3422 6845 9.258826 TGTCAGTTAGTCGATTATAGAGACTAC 57.741 37.037 11.24 5.83 44.26 2.73
3423 6846 9.258826 GTGTCAGTTAGTCGATTATAGAGACTA 57.741 37.037 8.86 8.86 43.93 2.59
3424 6847 7.769507 TGTGTCAGTTAGTCGATTATAGAGACT 59.230 37.037 10.33 10.33 45.85 3.24
3425 6848 7.917597 TGTGTCAGTTAGTCGATTATAGAGAC 58.082 38.462 0.00 0.00 35.30 3.36
3426 6849 7.226918 CCTGTGTCAGTTAGTCGATTATAGAGA 59.773 40.741 0.00 0.00 0.00 3.10
3427 6850 7.012515 ACCTGTGTCAGTTAGTCGATTATAGAG 59.987 40.741 0.00 0.00 0.00 2.43
3428 6851 6.827251 ACCTGTGTCAGTTAGTCGATTATAGA 59.173 38.462 0.00 0.00 0.00 1.98
3429 6852 7.028926 ACCTGTGTCAGTTAGTCGATTATAG 57.971 40.000 0.00 0.00 0.00 1.31
3430 6853 7.772292 ACTACCTGTGTCAGTTAGTCGATTATA 59.228 37.037 2.06 0.00 35.33 0.98
3431 6854 5.916661 ACCTGTGTCAGTTAGTCGATTAT 57.083 39.130 0.00 0.00 0.00 1.28
3432 6855 5.942236 ACTACCTGTGTCAGTTAGTCGATTA 59.058 40.000 2.06 0.00 35.33 1.75
3433 6856 4.765856 ACTACCTGTGTCAGTTAGTCGATT 59.234 41.667 2.06 0.00 35.33 3.34
3434 6857 4.156190 CACTACCTGTGTCAGTTAGTCGAT 59.844 45.833 4.46 0.00 37.55 3.59
3435 6858 3.501062 CACTACCTGTGTCAGTTAGTCGA 59.499 47.826 4.46 0.00 37.55 4.20
3436 6859 3.366070 CCACTACCTGTGTCAGTTAGTCG 60.366 52.174 4.46 0.00 37.55 4.18
3437 6860 3.573110 ACCACTACCTGTGTCAGTTAGTC 59.427 47.826 4.46 0.00 37.55 2.59
3438 6861 3.573695 ACCACTACCTGTGTCAGTTAGT 58.426 45.455 2.06 2.06 39.64 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.