Multiple sequence alignment - TraesCS2B01G205700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G205700 chr2B 100.000 4194 0 0 1 4194 184771883 184776076 0.000000e+00 7745.0
1 TraesCS2B01G205700 chr2B 92.920 113 7 1 2149 2261 76549925 76550036 3.360000e-36 163.0
2 TraesCS2B01G205700 chr2D 90.767 1603 84 35 700 2269 131276908 131278479 0.000000e+00 2082.0
3 TraesCS2B01G205700 chr2D 93.493 1337 61 10 2281 3612 131278573 131279888 0.000000e+00 1964.0
4 TraesCS2B01G205700 chr2D 86.020 608 66 14 1 598 131272225 131272823 5.920000e-178 634.0
5 TraesCS2B01G205700 chr2D 93.143 175 4 3 4012 4178 131281214 131281388 2.500000e-62 250.0
6 TraesCS2B01G205700 chr2D 92.308 169 10 2 3608 3774 131280696 131280863 1.950000e-58 237.0
7 TraesCS2B01G205700 chr2D 86.224 196 15 5 3826 4015 131280861 131281050 7.110000e-48 202.0
8 TraesCS2B01G205700 chr2A 90.469 1364 100 18 687 2035 137931510 137932858 0.000000e+00 1772.0
9 TraesCS2B01G205700 chr2A 89.702 738 55 16 2281 3012 137933212 137933934 0.000000e+00 922.0
10 TraesCS2B01G205700 chr2A 83.571 560 73 11 70 611 137929738 137930296 1.350000e-139 507.0
11 TraesCS2B01G205700 chr2A 85.598 493 54 11 3009 3493 137933975 137934458 6.260000e-138 501.0
12 TraesCS2B01G205700 chr2A 91.304 230 19 1 2036 2265 137932895 137933123 3.150000e-81 313.0
13 TraesCS2B01G205700 chr6D 86.406 1074 103 32 992 2038 5978572 5977515 0.000000e+00 1134.0
14 TraesCS2B01G205700 chr6D 89.046 283 19 7 813 1093 471075112 471075384 1.440000e-89 340.0
15 TraesCS2B01G205700 chr6D 82.804 378 43 14 3108 3477 5976618 5976255 6.770000e-83 318.0
16 TraesCS2B01G205700 chr6A 84.241 1212 139 37 992 2172 5321617 5320427 0.000000e+00 1133.0
17 TraesCS2B01G205700 chr6A 83.158 380 49 10 3070 3445 5319425 5319057 2.420000e-87 333.0
18 TraesCS2B01G205700 chr6A 94.313 211 10 2 2051 2261 247559572 247559780 5.230000e-84 322.0
19 TraesCS2B01G205700 chr6B 83.180 1088 118 42 994 2038 11288849 11287784 0.000000e+00 935.0
20 TraesCS2B01G205700 chr6B 89.430 719 59 10 2297 3012 125020575 125021279 0.000000e+00 891.0
21 TraesCS2B01G205700 chr6B 88.178 719 64 10 2297 3012 4148052 4148752 0.000000e+00 837.0
22 TraesCS2B01G205700 chr6B 79.904 418 50 21 3069 3476 11286584 11286191 4.130000e-70 276.0
23 TraesCS2B01G205700 chr6B 92.357 157 11 1 937 1093 719480436 719480281 5.460000e-54 222.0
24 TraesCS2B01G205700 chr6B 85.385 130 8 6 813 940 719485203 719485083 1.580000e-24 124.0
25 TraesCS2B01G205700 chr6B 81.915 94 14 3 1159 1252 70032138 70032048 4.500000e-10 76.8
26 TraesCS2B01G205700 chr1D 89.291 719 60 10 2297 3012 360102604 360103308 0.000000e+00 885.0
27 TraesCS2B01G205700 chr7D 88.873 719 63 10 2297 3012 636195806 636195102 0.000000e+00 869.0
28 TraesCS2B01G205700 chr7D 88.750 720 66 12 2297 3012 636156694 636155986 0.000000e+00 867.0
29 TraesCS2B01G205700 chr7D 88.595 719 65 10 2297 3012 64418693 64417989 0.000000e+00 857.0
30 TraesCS2B01G205700 chr7D 90.112 536 52 1 1500 2035 329811554 329812088 0.000000e+00 695.0
31 TraesCS2B01G205700 chr5B 88.595 719 65 10 2297 3012 206760268 206759564 0.000000e+00 857.0
32 TraesCS2B01G205700 chr7B 91.694 301 23 2 1666 1966 701399776 701400074 2.330000e-112 416.0
33 TraesCS2B01G205700 chr7B 90.820 305 26 2 1666 1970 645437115 645436813 1.400000e-109 407.0
34 TraesCS2B01G205700 chr7B 92.920 113 7 1 2149 2261 701400104 701400215 3.360000e-36 163.0
35 TraesCS2B01G205700 chr4B 91.060 302 25 2 1666 1967 626991693 626991992 1.400000e-109 407.0
36 TraesCS2B01G205700 chr5A 94.787 211 10 1 2051 2261 161403997 161403788 1.120000e-85 327.0
37 TraesCS2B01G205700 chr5A 94.313 211 11 1 2051 2261 179212238 179212029 5.230000e-84 322.0
38 TraesCS2B01G205700 chr3D 94.545 165 8 1 2097 2261 519930490 519930653 1.940000e-63 254.0
39 TraesCS2B01G205700 chr3B 93.805 113 6 1 2149 2261 681350412 681350523 7.210000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G205700 chr2B 184771883 184776076 4193 False 7745.0 7745 100.0000 1 4194 1 chr2B.!!$F2 4193
1 TraesCS2B01G205700 chr2D 131276908 131281388 4480 False 947.0 2082 91.1870 700 4178 5 chr2D.!!$F2 3478
2 TraesCS2B01G205700 chr2D 131272225 131272823 598 False 634.0 634 86.0200 1 598 1 chr2D.!!$F1 597
3 TraesCS2B01G205700 chr2A 137929738 137934458 4720 False 803.0 1772 88.1288 70 3493 5 chr2A.!!$F1 3423
4 TraesCS2B01G205700 chr6D 5976255 5978572 2317 True 726.0 1134 84.6050 992 3477 2 chr6D.!!$R1 2485
5 TraesCS2B01G205700 chr6A 5319057 5321617 2560 True 733.0 1133 83.6995 992 3445 2 chr6A.!!$R1 2453
6 TraesCS2B01G205700 chr6B 125020575 125021279 704 False 891.0 891 89.4300 2297 3012 1 chr6B.!!$F2 715
7 TraesCS2B01G205700 chr6B 4148052 4148752 700 False 837.0 837 88.1780 2297 3012 1 chr6B.!!$F1 715
8 TraesCS2B01G205700 chr6B 11286191 11288849 2658 True 605.5 935 81.5420 994 3476 2 chr6B.!!$R4 2482
9 TraesCS2B01G205700 chr1D 360102604 360103308 704 False 885.0 885 89.2910 2297 3012 1 chr1D.!!$F1 715
10 TraesCS2B01G205700 chr7D 636195102 636195806 704 True 869.0 869 88.8730 2297 3012 1 chr7D.!!$R3 715
11 TraesCS2B01G205700 chr7D 636155986 636156694 708 True 867.0 867 88.7500 2297 3012 1 chr7D.!!$R2 715
12 TraesCS2B01G205700 chr7D 64417989 64418693 704 True 857.0 857 88.5950 2297 3012 1 chr7D.!!$R1 715
13 TraesCS2B01G205700 chr7D 329811554 329812088 534 False 695.0 695 90.1120 1500 2035 1 chr7D.!!$F1 535
14 TraesCS2B01G205700 chr5B 206759564 206760268 704 True 857.0 857 88.5950 2297 3012 1 chr5B.!!$R1 715


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
545 560 0.322546 GTCTCCCAAAGCCCGAACAT 60.323 55.0 0.0 0.0 0.0 2.71 F
1317 2521 0.534412 AGATGCAAGGTCTGTCTCCG 59.466 55.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1584 2817 0.506932 CAACACACGTGCTTACCTCG 59.493 55.0 17.22 0.0 36.57 4.63 R
3270 4833 0.249784 CCGCCATCTCATCCTCACTG 60.250 60.0 0.00 0.0 0.00 3.66 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.335356 ATGGCCAGGTCTCTTGCGG 62.335 63.158 13.05 0.00 32.96 5.69
21 22 2.743928 GCCAGGTCTCTTGCGGTG 60.744 66.667 0.00 0.00 0.00 4.94
66 67 5.665459 AGTTCTAGACTTGATATGTGTGGC 58.335 41.667 0.00 0.00 33.92 5.01
67 68 4.307443 TCTAGACTTGATATGTGTGGCG 57.693 45.455 0.00 0.00 0.00 5.69
68 69 2.315925 AGACTTGATATGTGTGGCGG 57.684 50.000 0.00 0.00 0.00 6.13
75 76 3.485394 TGATATGTGTGGCGGCATATTT 58.515 40.909 17.19 6.77 38.12 1.40
82 83 5.105752 TGTGTGGCGGCATATTTTAAATTC 58.894 37.500 17.19 0.00 0.00 2.17
86 87 6.478344 TGTGGCGGCATATTTTAAATTCATTC 59.522 34.615 17.19 0.00 0.00 2.67
91 92 7.599998 GCGGCATATTTTAAATTCATTCCAGAT 59.400 33.333 0.00 0.00 0.00 2.90
107 109 8.978539 TCATTCCAGATTTTTCGACGATATTAG 58.021 33.333 0.00 0.00 0.00 1.73
123 125 7.861630 ACGATATTAGTTCAATTACATGGCAC 58.138 34.615 0.00 0.00 0.00 5.01
136 138 3.747976 GGCACGCCCATCAACCAC 61.748 66.667 0.00 0.00 0.00 4.16
175 178 8.826546 CGATTTCGTCAATATCAAAATCTGTT 57.173 30.769 0.00 0.00 35.29 3.16
209 213 6.441093 TCCTTGATTCGAAGGATTTTCATG 57.559 37.500 3.35 3.82 45.52 3.07
220 224 6.091169 CGAAGGATTTTCATGTGATTTTTGGG 59.909 38.462 0.00 0.00 0.00 4.12
221 225 6.438186 AGGATTTTCATGTGATTTTTGGGT 57.562 33.333 0.00 0.00 0.00 4.51
239 244 8.950007 TTTTGGGTGTTAGAATCCTTAAGAAT 57.050 30.769 3.36 0.00 0.00 2.40
266 272 9.642327 TTTTCTATGTTGAATGTTTGATCCATG 57.358 29.630 0.00 0.00 0.00 3.66
271 277 6.193504 TGTTGAATGTTTGATCCATGGGATA 58.806 36.000 13.02 0.00 43.27 2.59
358 367 5.826737 TGCAATCAAACAAATCAAAACCCAT 59.173 32.000 0.00 0.00 0.00 4.00
383 392 5.698104 AGAATTGAGATGGGCATGACATTA 58.302 37.500 0.00 0.00 0.00 1.90
428 437 3.426695 CCGCACTTTTAGAATCCTGCAAG 60.427 47.826 0.00 0.00 0.00 4.01
450 459 2.039084 TCAAAGAGGCCCTCAGTCTTTC 59.961 50.000 14.46 0.00 38.24 2.62
460 469 2.928757 CCTCAGTCTTTCAAGATGCTCG 59.071 50.000 0.00 0.00 37.39 5.03
463 472 5.134202 TCAGTCTTTCAAGATGCTCGTAA 57.866 39.130 0.00 0.00 37.39 3.18
487 502 0.947660 AGCGTGTGTGTGAGCATCTG 60.948 55.000 0.00 0.00 34.92 2.90
507 522 7.201266 GCATCTGCGTTTATTTTGTGTTTCTAG 60.201 37.037 0.00 0.00 0.00 2.43
512 527 9.522804 TGCGTTTATTTTGTGTTTCTAGAAAAT 57.477 25.926 19.30 10.62 37.33 1.82
545 560 0.322546 GTCTCCCAAAGCCCGAACAT 60.323 55.000 0.00 0.00 0.00 2.71
588 603 8.456221 AGAAACCCAAATTATTATTTTCCCCA 57.544 30.769 0.00 0.00 31.63 4.96
652 855 1.887707 GCACCCGAATAGCCCGAAG 60.888 63.158 0.00 0.00 0.00 3.79
670 873 1.151668 AGCATGAACAGACAAGCGAC 58.848 50.000 0.00 0.00 39.08 5.19
673 876 1.462283 CATGAACAGACAAGCGACCAG 59.538 52.381 0.00 0.00 0.00 4.00
780 1946 4.729918 CCCAGCCCACCAGAGCAC 62.730 72.222 0.00 0.00 0.00 4.40
785 1951 2.831770 CCCACCAGAGCACACACT 59.168 61.111 0.00 0.00 0.00 3.55
800 1966 3.322466 ACTGCGTCCCTTCCCCTG 61.322 66.667 0.00 0.00 0.00 4.45
806 1972 1.489560 CGTCCCTTCCCCTGTTTCCT 61.490 60.000 0.00 0.00 0.00 3.36
807 1973 1.665137 GTCCCTTCCCCTGTTTCCTA 58.335 55.000 0.00 0.00 0.00 2.94
808 1974 2.206223 GTCCCTTCCCCTGTTTCCTAT 58.794 52.381 0.00 0.00 0.00 2.57
809 1975 2.172930 GTCCCTTCCCCTGTTTCCTATC 59.827 54.545 0.00 0.00 0.00 2.08
810 1976 1.495148 CCCTTCCCCTGTTTCCTATCC 59.505 57.143 0.00 0.00 0.00 2.59
811 1977 2.493091 CCTTCCCCTGTTTCCTATCCT 58.507 52.381 0.00 0.00 0.00 3.24
847 2019 2.357517 AGCAGTCGCAAGTTCCCG 60.358 61.111 0.00 0.00 42.27 5.14
934 2106 2.668550 GCGGCCTTGTTTCCGTCT 60.669 61.111 0.00 0.00 46.79 4.18
952 2124 3.797353 CCCACCTCCACCCATCCG 61.797 72.222 0.00 0.00 0.00 4.18
982 2154 3.429135 GCCAGGTTTCGTCTAGAACCTAG 60.429 52.174 12.53 7.74 37.88 3.02
985 2157 4.946157 CAGGTTTCGTCTAGAACCTAGGTA 59.054 45.833 16.67 0.00 37.88 3.08
1102 2286 1.034838 TTTCCTGGTGCGTGCTTTGT 61.035 50.000 0.00 0.00 0.00 2.83
1106 2290 1.447317 CTGGTGCGTGCTTTGTTCCT 61.447 55.000 0.00 0.00 0.00 3.36
1183 2384 0.579630 TGACGTCGTGTTGTGATTGC 59.420 50.000 11.62 0.00 0.00 3.56
1222 2423 2.841988 AGCAGAGGATCCGGGAGC 60.842 66.667 5.98 3.04 33.66 4.70
1223 2424 4.292178 GCAGAGGATCCGGGAGCG 62.292 72.222 5.98 0.00 33.66 5.03
1254 2458 4.003788 CCGGAGAACACGGCCACT 62.004 66.667 2.24 0.00 45.34 4.00
1275 2479 1.411246 GTCCTGTACATCGGCCACATA 59.589 52.381 2.24 0.00 0.00 2.29
1316 2520 1.406614 CCAGATGCAAGGTCTGTCTCC 60.407 57.143 13.37 0.00 41.13 3.71
1317 2521 0.534412 AGATGCAAGGTCTGTCTCCG 59.466 55.000 0.00 0.00 0.00 4.63
1449 2678 2.227757 TCAGGATTGCCCGGAACCA 61.228 57.895 0.73 0.00 40.87 3.67
1528 2761 2.599659 GCATCTAACTTGCTGTTTGGC 58.400 47.619 1.42 0.00 39.89 4.52
1584 2817 4.158579 GGATTCATTGAGTTTGAGAACCCC 59.841 45.833 0.00 0.00 36.39 4.95
1599 2832 2.654877 CCCGAGGTAAGCACGTGT 59.345 61.111 18.38 0.00 0.00 4.49
1657 2890 9.030301 GTATGTTTGTTGTCTGCTTACAAATTT 57.970 29.630 6.09 0.00 41.94 1.82
1663 2896 3.255642 TGTCTGCTTACAAATTTCTGGCC 59.744 43.478 0.00 0.00 0.00 5.36
1856 3089 6.036953 CAGAAACATAGCCTTCATCTTCTGTC 59.963 42.308 0.00 0.00 35.77 3.51
1864 3097 4.441356 GCCTTCATCTTCTGTCTAGGAGTG 60.441 50.000 0.00 0.00 30.96 3.51
1989 3224 1.278985 TCCCAACAGGCTACAGACATG 59.721 52.381 0.00 0.00 34.51 3.21
2014 3250 9.280174 TGTACTTAATATTACCAGGCTATTTGC 57.720 33.333 0.00 0.00 41.94 3.68
2020 3256 2.834638 ACCAGGCTATTTGCTTCCAT 57.165 45.000 0.00 0.00 42.39 3.41
2192 3531 7.815840 TTATGAAGTCAAGGATTTGTGACAA 57.184 32.000 0.00 0.00 45.40 3.18
2251 3590 6.395028 AGTGCAGAACTGAAGCATTGATGC 62.395 45.833 7.87 7.87 45.59 3.91
2268 3659 3.575256 TGATGCCAATCTCTTGCAACTTT 59.425 39.130 0.00 0.00 33.61 2.66
2326 3755 6.990939 ACTAGAGTTTTGTTTCCCTGTACTTC 59.009 38.462 0.00 0.00 0.00 3.01
2375 3839 7.449934 ACTGTTTCTTGCGTTTTGATTAAAG 57.550 32.000 0.00 0.00 0.00 1.85
2419 3883 8.082242 TGATCTACAACGTCCATATCTTGTATG 58.918 37.037 0.00 0.00 30.64 2.39
2766 4233 0.804364 TAGCTCAGCAATTTGCCACG 59.196 50.000 17.51 7.18 46.52 4.94
2846 4314 6.434028 AGGCATGCATTTGTAGTTTTCTAGAA 59.566 34.615 21.36 0.00 34.54 2.10
2988 4469 5.536161 TCCCAGGCTTTGCTTAATCATATTC 59.464 40.000 0.00 0.00 0.00 1.75
3014 4543 6.985645 TGAGCTGTGCTTCAATTGTTTTTAAT 59.014 30.769 5.13 0.00 39.88 1.40
3066 4595 7.878127 AGTACATTAGCTTCTGTTTTCTAGCAA 59.122 33.333 6.22 0.00 36.11 3.91
3067 4596 6.903419 ACATTAGCTTCTGTTTTCTAGCAAC 58.097 36.000 0.00 0.00 36.11 4.17
3219 4780 4.313020 ACAGAAGGCAGATGGATCTTTT 57.687 40.909 0.00 0.00 34.22 2.27
3244 4807 2.592308 GGGAGTGATGGGACTGCC 59.408 66.667 0.00 0.00 45.91 4.85
3253 4816 2.238646 TGATGGGACTGCCGAGTTAAAT 59.761 45.455 0.00 0.00 30.16 1.40
3270 4833 8.283291 CGAGTTAAATATGGCTGGTCTATTTTC 58.717 37.037 0.00 0.00 0.00 2.29
3294 4858 0.911769 AGGATGAGATGGCGGTTTCA 59.088 50.000 0.00 0.00 0.00 2.69
3383 4950 3.559069 AGAAGCATGAATATGTGGTGGG 58.441 45.455 0.00 0.00 36.65 4.61
3418 4993 4.803098 TCTTTCTTACCTGCCTCACTAC 57.197 45.455 0.00 0.00 0.00 2.73
3480 5055 7.701924 CACCGTAAAATTAATGCTGATTCATGT 59.298 33.333 0.00 0.00 0.00 3.21
3719 6111 9.392259 TCGATAGTCAAAGTTAGAGAAGTATGA 57.608 33.333 0.00 0.00 37.40 2.15
3726 6118 9.569167 TCAAAGTTAGAGAAGTATGATTGTACG 57.431 33.333 0.00 0.00 0.00 3.67
3778 6170 9.357161 TGTAAAATTTACCACATGTCTTTACCT 57.643 29.630 12.72 0.00 0.00 3.08
3781 6173 8.472007 AAATTTACCACATGTCTTTACCTTGA 57.528 30.769 0.00 0.00 0.00 3.02
3782 6174 6.870971 TTTACCACATGTCTTTACCTTGAC 57.129 37.500 0.00 0.00 0.00 3.18
3783 6175 3.751518 ACCACATGTCTTTACCTTGACC 58.248 45.455 0.00 0.00 32.67 4.02
3784 6176 3.137544 ACCACATGTCTTTACCTTGACCA 59.862 43.478 0.00 0.00 32.67 4.02
3785 6177 4.202567 ACCACATGTCTTTACCTTGACCAT 60.203 41.667 0.00 0.00 32.67 3.55
3786 6178 4.766891 CCACATGTCTTTACCTTGACCATT 59.233 41.667 0.00 0.00 32.67 3.16
3787 6179 5.335897 CCACATGTCTTTACCTTGACCATTG 60.336 44.000 0.00 0.00 32.67 2.82
3788 6180 4.218417 ACATGTCTTTACCTTGACCATTGC 59.782 41.667 0.00 0.00 32.67 3.56
3789 6181 3.826524 TGTCTTTACCTTGACCATTGCA 58.173 40.909 0.00 0.00 32.67 4.08
3790 6182 4.211125 TGTCTTTACCTTGACCATTGCAA 58.789 39.130 0.00 0.00 32.67 4.08
3791 6183 4.278170 TGTCTTTACCTTGACCATTGCAAG 59.722 41.667 4.94 0.00 41.77 4.01
3792 6184 4.278419 GTCTTTACCTTGACCATTGCAAGT 59.722 41.667 4.94 0.00 40.79 3.16
3793 6185 5.472137 GTCTTTACCTTGACCATTGCAAGTA 59.528 40.000 4.94 0.00 40.79 2.24
3794 6186 6.016610 GTCTTTACCTTGACCATTGCAAGTAA 60.017 38.462 4.94 2.50 40.79 2.24
3795 6187 6.719370 TCTTTACCTTGACCATTGCAAGTAAT 59.281 34.615 4.94 0.00 40.79 1.89
3796 6188 4.789012 ACCTTGACCATTGCAAGTAATG 57.211 40.909 4.94 4.19 40.79 1.90
3797 6189 4.406456 ACCTTGACCATTGCAAGTAATGA 58.594 39.130 4.94 0.00 40.79 2.57
3798 6190 4.832266 ACCTTGACCATTGCAAGTAATGAA 59.168 37.500 4.94 0.00 40.79 2.57
3799 6191 5.163513 CCTTGACCATTGCAAGTAATGAAC 58.836 41.667 4.94 6.44 40.79 3.18
3800 6192 5.278907 CCTTGACCATTGCAAGTAATGAACA 60.279 40.000 4.94 8.48 40.79 3.18
3801 6193 5.119931 TGACCATTGCAAGTAATGAACAC 57.880 39.130 4.94 2.53 39.79 3.32
3802 6194 4.022416 TGACCATTGCAAGTAATGAACACC 60.022 41.667 4.94 0.00 39.79 4.16
3803 6195 3.894427 ACCATTGCAAGTAATGAACACCA 59.106 39.130 4.94 0.00 39.79 4.17
3804 6196 4.343526 ACCATTGCAAGTAATGAACACCAA 59.656 37.500 4.94 0.00 39.79 3.67
3805 6197 5.163364 ACCATTGCAAGTAATGAACACCAAA 60.163 36.000 4.94 0.00 39.79 3.28
3806 6198 5.757320 CCATTGCAAGTAATGAACACCAAAA 59.243 36.000 4.94 0.00 39.79 2.44
3807 6199 6.427547 CCATTGCAAGTAATGAACACCAAAAT 59.572 34.615 4.94 0.00 39.79 1.82
3808 6200 7.041235 CCATTGCAAGTAATGAACACCAAAATT 60.041 33.333 4.94 0.00 39.79 1.82
3809 6201 7.856145 TTGCAAGTAATGAACACCAAAATTT 57.144 28.000 0.00 0.00 0.00 1.82
3810 6202 7.856145 TGCAAGTAATGAACACCAAAATTTT 57.144 28.000 0.00 0.00 0.00 1.82
3811 6203 7.914465 TGCAAGTAATGAACACCAAAATTTTC 58.086 30.769 0.00 0.00 0.00 2.29
3812 6204 7.011857 TGCAAGTAATGAACACCAAAATTTTCC 59.988 33.333 0.00 0.00 0.00 3.13
3813 6205 7.519809 GCAAGTAATGAACACCAAAATTTTCCC 60.520 37.037 0.00 0.00 0.00 3.97
3814 6206 7.373617 AGTAATGAACACCAAAATTTTCCCT 57.626 32.000 0.00 0.00 0.00 4.20
3815 6207 8.485578 AGTAATGAACACCAAAATTTTCCCTA 57.514 30.769 0.00 0.00 0.00 3.53
3816 6208 8.585018 AGTAATGAACACCAAAATTTTCCCTAG 58.415 33.333 0.00 0.00 0.00 3.02
3817 6209 5.208463 TGAACACCAAAATTTTCCCTAGC 57.792 39.130 0.00 0.00 0.00 3.42
3818 6210 4.898861 TGAACACCAAAATTTTCCCTAGCT 59.101 37.500 0.00 0.00 0.00 3.32
3819 6211 4.871933 ACACCAAAATTTTCCCTAGCTG 57.128 40.909 0.00 0.00 0.00 4.24
3820 6212 3.578282 ACACCAAAATTTTCCCTAGCTGG 59.422 43.478 0.00 0.00 0.00 4.85
3821 6213 3.831911 CACCAAAATTTTCCCTAGCTGGA 59.168 43.478 0.00 0.00 38.35 3.86
3822 6214 3.832490 ACCAAAATTTTCCCTAGCTGGAC 59.168 43.478 0.00 0.00 38.35 4.02
3823 6215 3.831911 CCAAAATTTTCCCTAGCTGGACA 59.168 43.478 0.00 0.00 38.35 4.02
3824 6216 4.283212 CCAAAATTTTCCCTAGCTGGACAA 59.717 41.667 0.00 0.00 38.35 3.18
3825 6217 5.230182 CAAAATTTTCCCTAGCTGGACAAC 58.770 41.667 0.00 0.00 38.35 3.32
3826 6218 4.388577 AATTTTCCCTAGCTGGACAACT 57.611 40.909 0.00 0.00 38.35 3.16
3827 6219 3.418684 TTTTCCCTAGCTGGACAACTC 57.581 47.619 0.00 0.00 38.35 3.01
3840 6232 2.342179 GACAACTCACTCCTTAGCAGC 58.658 52.381 0.00 0.00 0.00 5.25
3867 6259 7.441458 GGCGTAGAGGAAAAGTAAATCACATAT 59.559 37.037 0.00 0.00 0.00 1.78
3868 6260 8.827677 GCGTAGAGGAAAAGTAAATCACATATT 58.172 33.333 0.00 0.00 0.00 1.28
3960 6352 6.364706 CCGTAATTACAGCAAAATCAGCAAAA 59.635 34.615 15.67 0.00 0.00 2.44
3962 6354 8.103924 CGTAATTACAGCAAAATCAGCAAAATC 58.896 33.333 15.67 0.00 0.00 2.17
3963 6355 7.966246 AATTACAGCAAAATCAGCAAAATCA 57.034 28.000 0.00 0.00 0.00 2.57
3964 6356 7.591006 ATTACAGCAAAATCAGCAAAATCAG 57.409 32.000 0.00 0.00 0.00 2.90
3972 6369 4.778534 ATCAGCAAAATCAGGTTGTCTG 57.221 40.909 0.00 0.00 44.68 3.51
3974 6371 1.267806 AGCAAAATCAGGTTGTCTGCG 59.732 47.619 0.00 0.00 43.06 5.18
3983 6380 1.965930 GTTGTCTGCGGTGGATGCA 60.966 57.895 0.00 0.00 40.70 3.96
4009 6406 5.120830 CCGCCTGCAATACTACATTTCTATC 59.879 44.000 0.00 0.00 0.00 2.08
4024 6589 3.491766 TCTATCTCTCCCCAAACCACT 57.508 47.619 0.00 0.00 0.00 4.00
4103 6676 5.007528 CCCAAACCTTAATTTTGCACAACTG 59.992 40.000 0.00 0.00 33.37 3.16
4180 6753 9.142515 AGTGCACAATTAAACATCACATAATTG 57.857 29.630 21.04 13.17 45.68 2.32
4181 6754 9.138062 GTGCACAATTAAACATCACATAATTGA 57.862 29.630 13.17 0.88 44.21 2.57
4182 6755 9.702494 TGCACAATTAAACATCACATAATTGAA 57.298 25.926 18.91 6.43 44.21 2.69
4183 6756 9.956797 GCACAATTAAACATCACATAATTGAAC 57.043 29.630 18.91 9.86 44.21 3.18
4192 6765 9.859427 AACATCACATAATTGAACTAAACATGG 57.141 29.630 0.00 0.00 0.00 3.66
4193 6766 9.023962 ACATCACATAATTGAACTAAACATGGT 57.976 29.630 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.868406 GTTTCACCGCAAGAGACCTG 59.132 55.000 0.00 0.00 43.02 4.00
31 32 6.360370 AAGTCTAGAACTTGAACCTGCATA 57.640 37.500 0.00 0.00 46.61 3.14
60 61 5.105752 TGAATTTAAAATATGCCGCCACAC 58.894 37.500 0.00 0.00 0.00 3.82
63 64 5.988561 GGAATGAATTTAAAATATGCCGCCA 59.011 36.000 0.00 0.00 0.00 5.69
64 65 5.988561 TGGAATGAATTTAAAATATGCCGCC 59.011 36.000 0.00 0.00 0.00 6.13
65 66 6.922957 TCTGGAATGAATTTAAAATATGCCGC 59.077 34.615 0.00 0.00 0.00 6.53
66 67 9.480053 AATCTGGAATGAATTTAAAATATGCCG 57.520 29.630 0.00 0.00 0.00 5.69
75 76 8.508062 TCGTCGAAAAATCTGGAATGAATTTAA 58.492 29.630 0.00 0.00 0.00 1.52
82 83 8.765219 ACTAATATCGTCGAAAAATCTGGAATG 58.235 33.333 0.00 0.00 0.00 2.67
86 87 8.126871 TGAACTAATATCGTCGAAAAATCTGG 57.873 34.615 0.00 0.00 0.00 3.86
107 109 1.469079 GGGCGTGCCATGTAATTGAAC 60.469 52.381 13.76 0.00 37.98 3.18
114 116 1.029408 GTTGATGGGCGTGCCATGTA 61.029 55.000 13.76 0.00 37.98 2.29
115 117 2.035469 TTGATGGGCGTGCCATGT 59.965 55.556 13.76 0.00 37.98 3.21
116 118 2.491152 GTTGATGGGCGTGCCATG 59.509 61.111 13.76 0.00 37.98 3.66
123 125 1.671054 ACTTCGTGGTTGATGGGCG 60.671 57.895 0.00 0.00 0.00 6.13
153 155 6.806249 GCCAACAGATTTTGATATTGACGAAA 59.194 34.615 0.00 0.00 0.00 3.46
168 170 0.034670 GAGCCCTGAGCCAACAGATT 60.035 55.000 0.00 0.00 45.47 2.40
173 176 1.676967 CAAGGAGCCCTGAGCCAAC 60.677 63.158 0.00 0.00 45.47 3.77
175 178 1.210204 AATCAAGGAGCCCTGAGCCA 61.210 55.000 0.00 0.00 45.47 4.75
209 213 6.590234 AGGATTCTAACACCCAAAAATCAC 57.410 37.500 0.00 0.00 0.00 3.06
294 302 8.958060 AAGAATCCTATATGAAGCAGTACCTA 57.042 34.615 0.00 0.00 0.00 3.08
358 367 5.114764 TGTCATGCCCATCTCAATTCTAA 57.885 39.130 0.00 0.00 0.00 2.10
410 419 6.772716 TCTTTGACTTGCAGGATTCTAAAAGT 59.227 34.615 1.40 1.01 33.30 2.66
428 437 0.980423 AGACTGAGGGCCTCTTTGAC 59.020 55.000 32.28 21.02 0.00 3.18
450 459 2.983136 CGCTATCCTTACGAGCATCTTG 59.017 50.000 0.00 0.00 35.91 3.02
460 469 3.179830 CTCACACACACGCTATCCTTAC 58.820 50.000 0.00 0.00 0.00 2.34
463 472 0.108615 GCTCACACACACGCTATCCT 60.109 55.000 0.00 0.00 0.00 3.24
507 522 9.832445 TGGGAGACAACTGTTATAGATATTTTC 57.168 33.333 0.00 0.00 0.00 2.29
512 527 7.272978 GCTTTGGGAGACAACTGTTATAGATA 58.727 38.462 0.00 0.00 39.19 1.98
514 529 5.488341 GCTTTGGGAGACAACTGTTATAGA 58.512 41.667 0.00 0.00 39.19 1.98
545 560 6.183360 GGGTTTCTAAACTTGGTAACCGAAAA 60.183 38.462 5.62 0.00 38.89 2.29
623 643 2.281900 CGGGTGCCGGGAGAAAAA 60.282 61.111 2.18 0.00 44.15 1.94
633 653 3.394635 TTCGGGCTATTCGGGTGCC 62.395 63.158 0.00 0.00 45.42 5.01
634 654 1.887707 CTTCGGGCTATTCGGGTGC 60.888 63.158 0.00 0.00 0.00 5.01
635 655 1.887707 GCTTCGGGCTATTCGGGTG 60.888 63.158 0.00 0.00 38.06 4.61
638 658 0.249868 TCATGCTTCGGGCTATTCGG 60.250 55.000 0.00 0.00 42.39 4.30
639 659 1.261619 GTTCATGCTTCGGGCTATTCG 59.738 52.381 0.00 0.00 42.39 3.34
640 660 2.288666 TGTTCATGCTTCGGGCTATTC 58.711 47.619 0.00 0.00 42.39 1.75
652 855 0.166814 GGTCGCTTGTCTGTTCATGC 59.833 55.000 0.00 0.00 35.89 4.06
785 1951 2.406002 GAAACAGGGGAAGGGACGCA 62.406 60.000 0.00 0.00 0.00 5.24
788 1954 1.665137 TAGGAAACAGGGGAAGGGAC 58.335 55.000 0.00 0.00 0.00 4.46
800 1966 4.468713 AGGGTACGTAGAGGATAGGAAAC 58.531 47.826 0.00 0.00 0.00 2.78
900 2072 2.185350 CTTGCTCTGGCCGTCGAT 59.815 61.111 0.00 0.00 37.74 3.59
926 2098 1.152204 TGGAGGTGGGAGACGGAAA 60.152 57.895 0.00 0.00 0.00 3.13
934 2106 2.286121 GGATGGGTGGAGGTGGGA 60.286 66.667 0.00 0.00 0.00 4.37
952 2124 4.043200 GAAACCTGGCTGTGGCGC 62.043 66.667 0.00 0.00 39.81 6.53
982 2154 2.482142 CCATCTCGCTCAAACCTCTACC 60.482 54.545 0.00 0.00 0.00 3.18
985 2157 0.539051 CCCATCTCGCTCAAACCTCT 59.461 55.000 0.00 0.00 0.00 3.69
1068 2240 1.378514 GAAATCCTTGCCCTCGCCA 60.379 57.895 0.00 0.00 0.00 5.69
1102 2286 3.671008 TCGATTTGGTTCGAAGAGGAA 57.329 42.857 0.00 0.00 44.56 3.36
1141 2326 0.805711 ACAGCAACCAAAAAGCGTGC 60.806 50.000 0.00 0.00 0.00 5.34
1254 2458 1.188871 TGTGGCCGATGTACAGGACA 61.189 55.000 5.58 5.58 44.65 4.02
1275 2479 2.283388 TCGTAGAAGCCGTGGGGT 60.283 61.111 0.00 0.00 34.97 4.95
1316 2520 2.796304 CTTCTCTAAGCTCTGCTGACG 58.204 52.381 0.00 0.00 39.62 4.35
1449 2678 1.136305 ACGCAGCATACGATACCTTGT 59.864 47.619 0.00 0.00 0.00 3.16
1528 2761 4.868734 GGACTTTCCTGTCTAAACATACCG 59.131 45.833 0.00 0.00 37.16 4.02
1584 2817 0.506932 CAACACACGTGCTTACCTCG 59.493 55.000 17.22 0.00 36.57 4.63
1599 2832 7.365921 GCCCTGATAATCTGATATATCCCAACA 60.366 40.741 10.25 1.78 0.00 3.33
1657 2890 4.037222 TGATATACCAAGAACAGGCCAGA 58.963 43.478 5.01 0.00 0.00 3.86
1663 2896 4.130118 GCCACCTGATATACCAAGAACAG 58.870 47.826 0.00 0.00 0.00 3.16
1856 3089 6.349300 AGTGGTAATTAATGTGCACTCCTAG 58.651 40.000 19.41 0.00 0.00 3.02
1864 3097 7.996385 ACCTCATTTAGTGGTAATTAATGTGC 58.004 34.615 0.00 0.00 42.12 4.57
1895 3129 5.022787 AGCCTTTGCCCAAGAATATACAAA 58.977 37.500 0.00 0.00 38.69 2.83
1915 3150 6.166982 ACAGAGAAATACAAAGTAGACAGCC 58.833 40.000 0.00 0.00 0.00 4.85
1930 3165 9.167311 GTAAACAGTATTCCATGACAGAGAAAT 57.833 33.333 0.00 0.00 0.00 2.17
2014 3250 1.067142 AGCTGTGCAATGCAATGGAAG 60.067 47.619 10.44 4.22 41.47 3.46
2020 3256 4.009002 TCATTACTAGCTGTGCAATGCAA 58.991 39.130 10.44 0.00 41.47 4.08
2251 3590 8.592105 TTCAATAAAAAGTTGCAAGAGATTGG 57.408 30.769 0.00 0.00 0.00 3.16
2268 3659 5.477984 AGAGTTGCTGCAAGGATTCAATAAA 59.522 36.000 16.53 0.00 30.66 1.40
2403 3867 4.887748 AGAAGCCATACAAGATATGGACG 58.112 43.478 15.63 0.00 45.57 4.79
2419 3883 3.274288 CACACCTTTCCATCTAGAAGCC 58.726 50.000 0.00 0.00 0.00 4.35
2734 4201 4.946445 TGCTGAGCTATTTCAGATCTGAG 58.054 43.478 23.92 14.34 45.95 3.35
2803 4270 1.824852 CCTTTTGCCCCAGGTCAATAC 59.175 52.381 0.00 0.00 0.00 1.89
2804 4271 1.894978 GCCTTTTGCCCCAGGTCAATA 60.895 52.381 0.00 0.00 32.06 1.90
2906 4376 9.618890 AGCAAGCAAATGTAGATAAGAATAAGA 57.381 29.630 0.00 0.00 0.00 2.10
2907 4377 9.661187 CAGCAAGCAAATGTAGATAAGAATAAG 57.339 33.333 0.00 0.00 0.00 1.73
2988 4469 3.637998 AACAATTGAAGCACAGCTCAG 57.362 42.857 13.59 0.00 38.25 3.35
3219 4780 1.293763 TCCCATCACTCCCACTGGATA 59.706 52.381 0.00 0.00 40.80 2.59
3244 4807 7.730364 AAATAGACCAGCCATATTTAACTCG 57.270 36.000 0.00 0.00 29.58 4.18
3253 4816 5.396772 CCTCACTGAAAATAGACCAGCCATA 60.397 44.000 0.00 0.00 0.00 2.74
3270 4833 0.249784 CCGCCATCTCATCCTCACTG 60.250 60.000 0.00 0.00 0.00 3.66
3294 4858 7.121611 TGAAGACATGATGCAAAACAGATGTAT 59.878 33.333 0.00 0.00 36.11 2.29
3383 4950 9.617975 CAGGTAAGAAAGAAAGTCATTCATTTC 57.382 33.333 0.00 0.00 40.72 2.17
3418 4993 9.551734 TGACAGATGAAGGATGTAAAATATCTG 57.448 33.333 0.00 0.00 43.47 2.90
3480 5055 5.529581 TCAATATGAGGTAACAGCGATGA 57.470 39.130 8.12 0.00 41.41 2.92
3548 5127 9.028284 TGTATATAAAATAACTACTCTCCCCGG 57.972 37.037 0.00 0.00 0.00 5.73
3549 5128 9.852091 GTGTATATAAAATAACTACTCTCCCCG 57.148 37.037 0.00 0.00 0.00 5.73
3678 6070 9.516314 TTTGACTATCGACATATAAACTGACTG 57.484 33.333 0.00 0.00 0.00 3.51
3774 6166 5.565509 TCATTACTTGCAATGGTCAAGGTA 58.434 37.500 0.00 0.00 43.77 3.08
3775 6167 4.406456 TCATTACTTGCAATGGTCAAGGT 58.594 39.130 0.00 0.00 43.77 3.50
3776 6168 5.163513 GTTCATTACTTGCAATGGTCAAGG 58.836 41.667 0.00 0.00 43.77 3.61
3777 6169 5.630680 GTGTTCATTACTTGCAATGGTCAAG 59.369 40.000 0.00 1.63 44.71 3.02
3778 6170 5.508825 GGTGTTCATTACTTGCAATGGTCAA 60.509 40.000 0.00 0.00 36.69 3.18
3779 6171 4.022416 GGTGTTCATTACTTGCAATGGTCA 60.022 41.667 0.00 0.00 36.69 4.02
3780 6172 4.022416 TGGTGTTCATTACTTGCAATGGTC 60.022 41.667 0.00 0.00 36.69 4.02
3781 6173 3.894427 TGGTGTTCATTACTTGCAATGGT 59.106 39.130 0.00 0.00 36.69 3.55
3782 6174 4.517952 TGGTGTTCATTACTTGCAATGG 57.482 40.909 0.00 0.00 36.69 3.16
3783 6175 6.841443 TTTTGGTGTTCATTACTTGCAATG 57.159 33.333 0.00 0.00 37.27 2.82
3784 6176 8.449251 AAATTTTGGTGTTCATTACTTGCAAT 57.551 26.923 0.00 0.00 0.00 3.56
3785 6177 7.856145 AAATTTTGGTGTTCATTACTTGCAA 57.144 28.000 0.00 0.00 0.00 4.08
3786 6178 7.011857 GGAAAATTTTGGTGTTCATTACTTGCA 59.988 33.333 8.47 0.00 0.00 4.08
3787 6179 7.351981 GGAAAATTTTGGTGTTCATTACTTGC 58.648 34.615 8.47 0.00 0.00 4.01
3788 6180 7.714813 AGGGAAAATTTTGGTGTTCATTACTTG 59.285 33.333 8.47 0.00 0.00 3.16
3789 6181 7.801104 AGGGAAAATTTTGGTGTTCATTACTT 58.199 30.769 8.47 0.00 0.00 2.24
3790 6182 7.373617 AGGGAAAATTTTGGTGTTCATTACT 57.626 32.000 8.47 0.00 0.00 2.24
3791 6183 7.330946 GCTAGGGAAAATTTTGGTGTTCATTAC 59.669 37.037 8.47 0.00 0.00 1.89
3792 6184 7.234577 AGCTAGGGAAAATTTTGGTGTTCATTA 59.765 33.333 8.47 0.00 0.00 1.90
3793 6185 6.043127 AGCTAGGGAAAATTTTGGTGTTCATT 59.957 34.615 8.47 0.00 0.00 2.57
3794 6186 5.543790 AGCTAGGGAAAATTTTGGTGTTCAT 59.456 36.000 8.47 0.00 0.00 2.57
3795 6187 4.898861 AGCTAGGGAAAATTTTGGTGTTCA 59.101 37.500 8.47 0.00 0.00 3.18
3796 6188 5.230182 CAGCTAGGGAAAATTTTGGTGTTC 58.770 41.667 8.47 0.00 0.00 3.18
3797 6189 4.040339 CCAGCTAGGGAAAATTTTGGTGTT 59.960 41.667 8.47 0.00 0.00 3.32
3798 6190 3.578282 CCAGCTAGGGAAAATTTTGGTGT 59.422 43.478 8.47 0.00 0.00 4.16
3799 6191 3.831911 TCCAGCTAGGGAAAATTTTGGTG 59.168 43.478 8.47 8.99 38.24 4.17
3800 6192 3.832490 GTCCAGCTAGGGAAAATTTTGGT 59.168 43.478 8.47 0.00 39.05 3.67
3801 6193 3.831911 TGTCCAGCTAGGGAAAATTTTGG 59.168 43.478 8.47 1.41 39.05 3.28
3802 6194 5.011023 AGTTGTCCAGCTAGGGAAAATTTTG 59.989 40.000 8.47 0.00 36.57 2.44
3803 6195 5.147767 AGTTGTCCAGCTAGGGAAAATTTT 58.852 37.500 2.28 2.28 36.57 1.82
3804 6196 4.740902 AGTTGTCCAGCTAGGGAAAATTT 58.259 39.130 0.00 0.00 36.57 1.82
3805 6197 4.202567 TGAGTTGTCCAGCTAGGGAAAATT 60.203 41.667 0.00 0.00 36.57 1.82
3806 6198 3.330701 TGAGTTGTCCAGCTAGGGAAAAT 59.669 43.478 0.00 0.00 36.57 1.82
3807 6199 2.708861 TGAGTTGTCCAGCTAGGGAAAA 59.291 45.455 0.00 0.00 39.05 2.29
3808 6200 2.038557 GTGAGTTGTCCAGCTAGGGAAA 59.961 50.000 0.00 0.00 39.05 3.13
3809 6201 1.623811 GTGAGTTGTCCAGCTAGGGAA 59.376 52.381 0.00 0.00 39.05 3.97
3810 6202 1.203187 AGTGAGTTGTCCAGCTAGGGA 60.203 52.381 0.00 0.00 38.24 4.20
3811 6203 1.205893 GAGTGAGTTGTCCAGCTAGGG 59.794 57.143 0.00 0.00 38.24 3.53
3812 6204 1.205893 GGAGTGAGTTGTCCAGCTAGG 59.794 57.143 0.00 0.00 39.47 3.02
3813 6205 2.175202 AGGAGTGAGTTGTCCAGCTAG 58.825 52.381 0.00 0.00 35.02 3.42
3814 6206 2.310779 AGGAGTGAGTTGTCCAGCTA 57.689 50.000 0.00 0.00 35.02 3.32
3815 6207 1.428869 AAGGAGTGAGTTGTCCAGCT 58.571 50.000 0.00 0.00 35.02 4.24
3816 6208 2.933056 GCTAAGGAGTGAGTTGTCCAGC 60.933 54.545 0.00 0.00 35.02 4.85
3817 6209 2.300152 TGCTAAGGAGTGAGTTGTCCAG 59.700 50.000 0.00 0.00 35.02 3.86
3818 6210 2.300152 CTGCTAAGGAGTGAGTTGTCCA 59.700 50.000 0.00 0.00 35.02 4.02
3819 6211 2.933056 GCTGCTAAGGAGTGAGTTGTCC 60.933 54.545 0.00 0.00 0.00 4.02
3820 6212 2.342179 GCTGCTAAGGAGTGAGTTGTC 58.658 52.381 0.00 0.00 0.00 3.18
3821 6213 1.337260 CGCTGCTAAGGAGTGAGTTGT 60.337 52.381 0.00 0.00 0.00 3.32
3822 6214 1.354040 CGCTGCTAAGGAGTGAGTTG 58.646 55.000 0.00 0.00 0.00 3.16
3823 6215 0.247736 CCGCTGCTAAGGAGTGAGTT 59.752 55.000 0.00 0.00 0.00 3.01
3824 6216 1.893786 CCGCTGCTAAGGAGTGAGT 59.106 57.895 0.00 0.00 0.00 3.41
3825 6217 1.520342 GCCGCTGCTAAGGAGTGAG 60.520 63.158 0.00 0.00 33.53 3.51
3826 6218 2.579201 GCCGCTGCTAAGGAGTGA 59.421 61.111 0.00 0.00 33.53 3.41
3827 6219 2.279502 TACGCCGCTGCTAAGGAGTG 62.280 60.000 10.67 0.00 40.66 3.51
3840 6232 4.032558 GTGATTTACTTTTCCTCTACGCCG 59.967 45.833 0.00 0.00 0.00 6.46
3935 6327 4.980590 TGCTGATTTTGCTGTAATTACGG 58.019 39.130 18.49 18.49 35.68 4.02
3936 6328 6.926280 TTTGCTGATTTTGCTGTAATTACG 57.074 33.333 10.92 7.03 0.00 3.18
3960 6352 1.003355 CCACCGCAGACAACCTGAT 60.003 57.895 0.00 0.00 45.78 2.90
3962 6354 1.003355 ATCCACCGCAGACAACCTG 60.003 57.895 0.00 0.00 45.67 4.00
3963 6355 1.003355 CATCCACCGCAGACAACCT 60.003 57.895 0.00 0.00 0.00 3.50
3964 6356 2.690778 GCATCCACCGCAGACAACC 61.691 63.158 0.00 0.00 0.00 3.77
3983 6380 3.492102 AATGTAGTATTGCAGGCGGAT 57.508 42.857 0.00 0.00 0.00 4.18
3987 6384 7.158021 AGAGATAGAAATGTAGTATTGCAGGC 58.842 38.462 0.00 0.00 0.00 4.85
3995 6392 7.070821 GGTTTGGGGAGAGATAGAAATGTAGTA 59.929 40.741 0.00 0.00 0.00 1.82
3996 6393 6.126739 GGTTTGGGGAGAGATAGAAATGTAGT 60.127 42.308 0.00 0.00 0.00 2.73
4009 6406 0.038310 GGGAAGTGGTTTGGGGAGAG 59.962 60.000 0.00 0.00 0.00 3.20
4024 6589 6.836527 TGATTGAAGGAGTTAAGTTTTGGGAA 59.163 34.615 0.00 0.00 0.00 3.97
4061 6626 3.292460 TGGGGAGTGGTTTTTAACTGTG 58.708 45.455 0.00 0.00 0.00 3.66
4074 6647 4.202305 TGCAAAATTAAGGTTTGGGGAGTG 60.202 41.667 13.45 0.00 36.64 3.51
4103 6676 7.478322 AGTTCATATCATGTTTGAATGCTGAC 58.522 34.615 9.69 0.50 34.96 3.51



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.