Multiple sequence alignment - TraesCS2B01G205600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G205600 chr2B 100.000 2786 0 0 1 2786 184769885 184772670 0.000000e+00 5145
1 TraesCS2B01G205600 chr2B 79.507 893 95 34 991 1864 184667101 184667924 3.140000e-154 555
2 TraesCS2B01G205600 chr2B 94.488 254 9 5 8 260 5219589 5219340 1.210000e-103 387
3 TraesCS2B01G205600 chr2B 93.511 262 14 3 1 260 566360229 566360489 1.210000e-103 387
4 TraesCS2B01G205600 chr2B 91.513 271 19 4 1 270 430530119 430530386 1.220000e-98 370
5 TraesCS2B01G205600 chr2D 89.269 1314 72 11 680 1930 131270709 131272016 0.000000e+00 1581
6 TraesCS2B01G205600 chr2D 85.692 636 72 14 1971 2596 131272197 131272823 0.000000e+00 652
7 TraesCS2B01G205600 chr2D 78.056 998 121 42 970 1951 131191260 131192175 8.780000e-150 540
8 TraesCS2B01G205600 chr2D 90.196 357 22 9 324 674 131270322 131270671 1.180000e-123 453
9 TraesCS2B01G205600 chr2D 92.884 267 12 1 1 260 308478137 308477871 5.630000e-102 381
10 TraesCS2B01G205600 chr2A 87.473 1365 74 28 690 1974 137928268 137929615 0.000000e+00 1483
11 TraesCS2B01G205600 chr2A 77.276 1307 157 60 681 1945 137277727 137278935 8.410000e-180 640
12 TraesCS2B01G205600 chr2A 83.571 560 73 11 2068 2609 137929738 137930296 8.900000e-140 507
13 TraesCS2B01G205600 chr2A 88.124 421 34 8 264 674 137927535 137927949 1.160000e-133 486
14 TraesCS2B01G205600 chr2A 87.500 104 8 3 2685 2783 137931510 137931613 6.310000e-22 115
15 TraesCS2B01G205600 chr5D 93.536 263 14 2 1 260 472242026 472241764 3.370000e-104 388
16 TraesCS2B01G205600 chr5D 92.509 267 13 3 1 260 538225892 538225626 2.620000e-100 375
17 TraesCS2B01G205600 chr3D 92.857 266 13 2 1 260 465958140 465957875 5.630000e-102 381
18 TraesCS2B01G205600 chr6A 93.411 258 11 4 3 260 203595215 203595466 7.280000e-101 377
19 TraesCS2B01G205600 chr4B 93.050 259 16 2 3 260 435810741 435810484 7.280000e-101 377


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G205600 chr2B 184769885 184772670 2785 False 5145.000000 5145 100.000000 1 2786 1 chr2B.!!$F2 2785
1 TraesCS2B01G205600 chr2B 184667101 184667924 823 False 555.000000 555 79.507000 991 1864 1 chr2B.!!$F1 873
2 TraesCS2B01G205600 chr2D 131270322 131272823 2501 False 895.333333 1581 88.385667 324 2596 3 chr2D.!!$F2 2272
3 TraesCS2B01G205600 chr2D 131191260 131192175 915 False 540.000000 540 78.056000 970 1951 1 chr2D.!!$F1 981
4 TraesCS2B01G205600 chr2A 137927535 137931613 4078 False 647.750000 1483 86.667000 264 2783 4 chr2A.!!$F2 2519
5 TraesCS2B01G205600 chr2A 137277727 137278935 1208 False 640.000000 640 77.276000 681 1945 1 chr2A.!!$F1 1264

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.047176 AGAGGGAGAGGGAGGAGAGA 59.953 60.0 0.0 0.0 0.0 3.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1894 2309 0.663688 ATAGCTCAGCAGGTACGACG 59.336 55.0 0.0 0.0 35.41 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.559998 GAGAGTGAGAGAAAGCGAGG 57.440 55.000 0.00 0.00 0.00 4.63
20 21 1.134175 GAGAGTGAGAGAAAGCGAGGG 59.866 57.143 0.00 0.00 0.00 4.30
21 22 1.178276 GAGTGAGAGAAAGCGAGGGA 58.822 55.000 0.00 0.00 0.00 4.20
22 23 1.134175 GAGTGAGAGAAAGCGAGGGAG 59.866 57.143 0.00 0.00 0.00 4.30
23 24 1.178276 GTGAGAGAAAGCGAGGGAGA 58.822 55.000 0.00 0.00 0.00 3.71
24 25 1.134175 GTGAGAGAAAGCGAGGGAGAG 59.866 57.143 0.00 0.00 0.00 3.20
25 26 0.744281 GAGAGAAAGCGAGGGAGAGG 59.256 60.000 0.00 0.00 0.00 3.69
26 27 0.686112 AGAGAAAGCGAGGGAGAGGG 60.686 60.000 0.00 0.00 0.00 4.30
27 28 0.684805 GAGAAAGCGAGGGAGAGGGA 60.685 60.000 0.00 0.00 0.00 4.20
28 29 0.686112 AGAAAGCGAGGGAGAGGGAG 60.686 60.000 0.00 0.00 0.00 4.30
29 30 0.684805 GAAAGCGAGGGAGAGGGAGA 60.685 60.000 0.00 0.00 0.00 3.71
30 31 0.686112 AAAGCGAGGGAGAGGGAGAG 60.686 60.000 0.00 0.00 0.00 3.20
31 32 2.520741 GCGAGGGAGAGGGAGAGG 60.521 72.222 0.00 0.00 0.00 3.69
32 33 2.197324 CGAGGGAGAGGGAGAGGG 59.803 72.222 0.00 0.00 0.00 4.30
33 34 2.387772 CGAGGGAGAGGGAGAGGGA 61.388 68.421 0.00 0.00 0.00 4.20
34 35 1.541672 GAGGGAGAGGGAGAGGGAG 59.458 68.421 0.00 0.00 0.00 4.30
35 36 2.018086 AGGGAGAGGGAGAGGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
36 37 2.015726 GGGAGAGGGAGAGGGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
37 38 1.541672 GGAGAGGGAGAGGGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
38 39 0.996762 GGAGAGGGAGAGGGAGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
39 40 0.478507 GAGAGGGAGAGGGAGGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
40 41 0.047176 AGAGGGAGAGGGAGGAGAGA 59.953 60.000 0.00 0.00 0.00 3.10
41 42 0.478507 GAGGGAGAGGGAGGAGAGAG 59.521 65.000 0.00 0.00 0.00 3.20
42 43 0.998945 AGGGAGAGGGAGGAGAGAGG 60.999 65.000 0.00 0.00 0.00 3.69
43 44 0.996762 GGGAGAGGGAGGAGAGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
44 45 0.930726 GGAGAGGGAGGAGAGAGGAA 59.069 60.000 0.00 0.00 0.00 3.36
45 46 1.133482 GGAGAGGGAGGAGAGAGGAAG 60.133 61.905 0.00 0.00 0.00 3.46
46 47 1.850345 GAGAGGGAGGAGAGAGGAAGA 59.150 57.143 0.00 0.00 0.00 2.87
47 48 1.852965 AGAGGGAGGAGAGAGGAAGAG 59.147 57.143 0.00 0.00 0.00 2.85
48 49 1.850345 GAGGGAGGAGAGAGGAAGAGA 59.150 57.143 0.00 0.00 0.00 3.10
49 50 1.852965 AGGGAGGAGAGAGGAAGAGAG 59.147 57.143 0.00 0.00 0.00 3.20
50 51 1.850345 GGGAGGAGAGAGGAAGAGAGA 59.150 57.143 0.00 0.00 0.00 3.10
51 52 2.158608 GGGAGGAGAGAGGAAGAGAGAG 60.159 59.091 0.00 0.00 0.00 3.20
52 53 2.777692 GGAGGAGAGAGGAAGAGAGAGA 59.222 54.545 0.00 0.00 0.00 3.10
53 54 3.433740 GGAGGAGAGAGGAAGAGAGAGAC 60.434 56.522 0.00 0.00 0.00 3.36
54 55 2.170607 AGGAGAGAGGAAGAGAGAGACG 59.829 54.545 0.00 0.00 0.00 4.18
55 56 1.940613 GAGAGAGGAAGAGAGAGACGC 59.059 57.143 0.00 0.00 0.00 5.19
56 57 1.021968 GAGAGGAAGAGAGAGACGCC 58.978 60.000 0.00 0.00 0.00 5.68
57 58 0.623723 AGAGGAAGAGAGAGACGCCT 59.376 55.000 0.00 0.00 0.00 5.52
58 59 1.005450 AGAGGAAGAGAGAGACGCCTT 59.995 52.381 0.00 0.00 0.00 4.35
59 60 2.240160 AGAGGAAGAGAGAGACGCCTTA 59.760 50.000 0.00 0.00 0.00 2.69
60 61 2.616842 GAGGAAGAGAGAGACGCCTTAG 59.383 54.545 0.00 0.00 0.00 2.18
61 62 1.679153 GGAAGAGAGAGACGCCTTAGG 59.321 57.143 0.00 0.00 0.00 2.69
62 63 2.645802 GAAGAGAGAGACGCCTTAGGA 58.354 52.381 0.69 0.00 0.00 2.94
63 64 3.219281 GAAGAGAGAGACGCCTTAGGAT 58.781 50.000 0.69 0.00 0.00 3.24
64 65 3.306472 AGAGAGAGACGCCTTAGGATT 57.694 47.619 0.69 0.00 0.00 3.01
65 66 4.440826 AGAGAGAGACGCCTTAGGATTA 57.559 45.455 0.69 0.00 0.00 1.75
66 67 4.794334 AGAGAGAGACGCCTTAGGATTAA 58.206 43.478 0.69 0.00 0.00 1.40
67 68 4.581409 AGAGAGAGACGCCTTAGGATTAAC 59.419 45.833 0.69 0.00 0.00 2.01
68 69 3.637694 AGAGAGACGCCTTAGGATTAACC 59.362 47.826 0.69 0.00 39.35 2.85
69 70 3.371965 AGAGACGCCTTAGGATTAACCA 58.628 45.455 0.69 0.00 42.04 3.67
70 71 3.967987 AGAGACGCCTTAGGATTAACCAT 59.032 43.478 0.69 0.00 42.04 3.55
71 72 5.145564 AGAGACGCCTTAGGATTAACCATA 58.854 41.667 0.69 0.00 42.04 2.74
72 73 5.780793 AGAGACGCCTTAGGATTAACCATAT 59.219 40.000 0.69 0.00 42.04 1.78
73 74 6.270231 AGAGACGCCTTAGGATTAACCATATT 59.730 38.462 0.69 0.00 42.04 1.28
74 75 6.465084 AGACGCCTTAGGATTAACCATATTC 58.535 40.000 0.69 0.00 42.04 1.75
75 76 6.042781 AGACGCCTTAGGATTAACCATATTCA 59.957 38.462 0.69 0.00 42.04 2.57
76 77 6.597562 ACGCCTTAGGATTAACCATATTCAA 58.402 36.000 0.69 0.00 42.04 2.69
77 78 7.057894 ACGCCTTAGGATTAACCATATTCAAA 58.942 34.615 0.69 0.00 42.04 2.69
78 79 7.012989 ACGCCTTAGGATTAACCATATTCAAAC 59.987 37.037 0.69 0.00 42.04 2.93
79 80 7.012894 CGCCTTAGGATTAACCATATTCAAACA 59.987 37.037 0.69 0.00 42.04 2.83
80 81 8.135529 GCCTTAGGATTAACCATATTCAAACAC 58.864 37.037 0.69 0.00 42.04 3.32
81 82 8.342634 CCTTAGGATTAACCATATTCAAACACG 58.657 37.037 0.00 0.00 42.04 4.49
82 83 8.795842 TTAGGATTAACCATATTCAAACACGT 57.204 30.769 0.00 0.00 42.04 4.49
83 84 7.696992 AGGATTAACCATATTCAAACACGTT 57.303 32.000 0.00 0.00 42.04 3.99
84 85 8.117813 AGGATTAACCATATTCAAACACGTTT 57.882 30.769 0.00 0.00 42.04 3.60
85 86 8.581578 AGGATTAACCATATTCAAACACGTTTT 58.418 29.630 0.00 0.00 42.04 2.43
86 87 9.198837 GGATTAACCATATTCAAACACGTTTTT 57.801 29.630 0.00 0.00 38.79 1.94
104 105 0.736053 TTTTGTGTGAACACCGAGGC 59.264 50.000 10.92 0.00 45.88 4.70
105 106 1.098712 TTTGTGTGAACACCGAGGCC 61.099 55.000 10.92 0.00 45.88 5.19
106 107 2.110213 GTGTGAACACCGAGGCCA 59.890 61.111 5.01 0.00 40.85 5.36
107 108 1.302511 GTGTGAACACCGAGGCCAT 60.303 57.895 5.01 0.00 40.85 4.40
108 109 1.003839 TGTGAACACCGAGGCCATC 60.004 57.895 5.01 0.00 0.00 3.51
109 110 1.003839 GTGAACACCGAGGCCATCA 60.004 57.895 5.01 0.00 0.00 3.07
110 111 1.003839 TGAACACCGAGGCCATCAC 60.004 57.895 5.01 0.00 0.00 3.06
111 112 1.745489 GAACACCGAGGCCATCACC 60.745 63.158 5.01 0.00 0.00 4.02
112 113 3.605749 AACACCGAGGCCATCACCG 62.606 63.158 5.01 0.00 33.69 4.94
113 114 4.838152 CACCGAGGCCATCACCGG 62.838 72.222 5.01 12.09 46.65 5.28
115 116 4.838152 CCGAGGCCATCACCGGTG 62.838 72.222 29.26 29.26 37.40 4.94
116 117 3.770040 CGAGGCCATCACCGGTGA 61.770 66.667 37.79 37.79 44.59 4.02
117 118 2.187946 GAGGCCATCACCGGTGAG 59.812 66.667 37.98 27.53 43.61 3.51
118 119 3.391665 GAGGCCATCACCGGTGAGG 62.392 68.421 37.98 37.04 43.61 3.86
126 127 4.306245 ACCGGTGAGGGTGAGAAA 57.694 55.556 6.12 0.00 46.96 2.52
127 128 2.058675 ACCGGTGAGGGTGAGAAAG 58.941 57.895 6.12 0.00 46.96 2.62
128 129 0.471211 ACCGGTGAGGGTGAGAAAGA 60.471 55.000 6.12 0.00 46.96 2.52
129 130 0.247736 CCGGTGAGGGTGAGAAAGAG 59.752 60.000 0.00 0.00 35.97 2.85
130 131 0.247736 CGGTGAGGGTGAGAAAGAGG 59.752 60.000 0.00 0.00 0.00 3.69
131 132 1.645710 GGTGAGGGTGAGAAAGAGGA 58.354 55.000 0.00 0.00 0.00 3.71
132 133 2.192263 GGTGAGGGTGAGAAAGAGGAT 58.808 52.381 0.00 0.00 0.00 3.24
133 134 3.375699 GGTGAGGGTGAGAAAGAGGATA 58.624 50.000 0.00 0.00 0.00 2.59
134 135 3.775316 GGTGAGGGTGAGAAAGAGGATAA 59.225 47.826 0.00 0.00 0.00 1.75
135 136 4.141824 GGTGAGGGTGAGAAAGAGGATAAG 60.142 50.000 0.00 0.00 0.00 1.73
136 137 3.452627 TGAGGGTGAGAAAGAGGATAAGC 59.547 47.826 0.00 0.00 0.00 3.09
137 138 2.432510 AGGGTGAGAAAGAGGATAAGCG 59.567 50.000 0.00 0.00 0.00 4.68
138 139 2.483889 GGGTGAGAAAGAGGATAAGCGG 60.484 54.545 0.00 0.00 0.00 5.52
139 140 2.205911 GTGAGAAAGAGGATAAGCGGC 58.794 52.381 0.00 0.00 0.00 6.53
140 141 1.831106 TGAGAAAGAGGATAAGCGGCA 59.169 47.619 1.45 0.00 0.00 5.69
141 142 2.236146 TGAGAAAGAGGATAAGCGGCAA 59.764 45.455 1.45 0.00 0.00 4.52
142 143 2.609916 GAGAAAGAGGATAAGCGGCAAC 59.390 50.000 1.45 0.00 0.00 4.17
143 144 2.027192 AGAAAGAGGATAAGCGGCAACA 60.027 45.455 1.45 0.00 0.00 3.33
144 145 1.739067 AAGAGGATAAGCGGCAACAC 58.261 50.000 1.45 0.00 0.00 3.32
145 146 0.613260 AGAGGATAAGCGGCAACACA 59.387 50.000 1.45 0.00 0.00 3.72
146 147 1.003118 AGAGGATAAGCGGCAACACAA 59.997 47.619 1.45 0.00 0.00 3.33
147 148 1.810151 GAGGATAAGCGGCAACACAAA 59.190 47.619 1.45 0.00 0.00 2.83
148 149 2.423538 GAGGATAAGCGGCAACACAAAT 59.576 45.455 1.45 0.00 0.00 2.32
149 150 3.616219 AGGATAAGCGGCAACACAAATA 58.384 40.909 1.45 0.00 0.00 1.40
150 151 4.207165 AGGATAAGCGGCAACACAAATAT 58.793 39.130 1.45 0.00 0.00 1.28
151 152 4.036734 AGGATAAGCGGCAACACAAATATG 59.963 41.667 1.45 0.00 0.00 1.78
152 153 4.036262 GGATAAGCGGCAACACAAATATGA 59.964 41.667 1.45 0.00 0.00 2.15
153 154 5.278463 GGATAAGCGGCAACACAAATATGAT 60.278 40.000 1.45 0.00 0.00 2.45
154 155 3.425577 AGCGGCAACACAAATATGATG 57.574 42.857 1.45 0.00 0.00 3.07
155 156 1.854126 GCGGCAACACAAATATGATGC 59.146 47.619 0.00 0.00 35.20 3.91
156 157 2.462889 CGGCAACACAAATATGATGCC 58.537 47.619 14.96 14.96 43.88 4.40
157 158 2.099592 CGGCAACACAAATATGATGCCT 59.900 45.455 20.40 0.00 44.49 4.75
158 159 3.709987 GGCAACACAAATATGATGCCTC 58.290 45.455 17.01 0.00 43.92 4.70
159 160 3.365832 GCAACACAAATATGATGCCTCG 58.634 45.455 0.00 0.00 32.22 4.63
160 161 3.181497 GCAACACAAATATGATGCCTCGT 60.181 43.478 0.00 0.00 32.22 4.18
161 162 4.035091 GCAACACAAATATGATGCCTCGTA 59.965 41.667 0.00 0.00 32.22 3.43
162 163 5.448496 GCAACACAAATATGATGCCTCGTAA 60.448 40.000 0.00 0.00 32.22 3.18
163 164 6.550843 CAACACAAATATGATGCCTCGTAAA 58.449 36.000 0.00 0.00 0.00 2.01
164 165 6.751514 ACACAAATATGATGCCTCGTAAAA 57.248 33.333 0.00 0.00 0.00 1.52
165 166 7.151999 ACACAAATATGATGCCTCGTAAAAA 57.848 32.000 0.00 0.00 0.00 1.94
166 167 7.771183 ACACAAATATGATGCCTCGTAAAAAT 58.229 30.769 0.00 0.00 0.00 1.82
167 168 8.898761 ACACAAATATGATGCCTCGTAAAAATA 58.101 29.630 0.00 0.00 0.00 1.40
168 169 9.729023 CACAAATATGATGCCTCGTAAAAATAA 57.271 29.630 0.00 0.00 0.00 1.40
171 172 9.965824 AAATATGATGCCTCGTAAAAATAAAGG 57.034 29.630 0.00 0.00 0.00 3.11
172 173 8.918202 ATATGATGCCTCGTAAAAATAAAGGA 57.082 30.769 0.00 0.00 0.00 3.36
173 174 6.677781 TGATGCCTCGTAAAAATAAAGGAG 57.322 37.500 0.00 0.00 0.00 3.69
174 175 6.411376 TGATGCCTCGTAAAAATAAAGGAGA 58.589 36.000 0.00 0.00 30.92 3.71
175 176 7.054124 TGATGCCTCGTAAAAATAAAGGAGAT 58.946 34.615 0.00 0.00 30.92 2.75
176 177 6.677781 TGCCTCGTAAAAATAAAGGAGATG 57.322 37.500 0.00 0.00 30.92 2.90
177 178 5.588648 TGCCTCGTAAAAATAAAGGAGATGG 59.411 40.000 0.00 0.00 30.92 3.51
178 179 5.820947 GCCTCGTAAAAATAAAGGAGATGGA 59.179 40.000 0.00 0.00 30.92 3.41
179 180 6.238402 GCCTCGTAAAAATAAAGGAGATGGAC 60.238 42.308 0.00 0.00 30.92 4.02
180 181 6.260271 CCTCGTAAAAATAAAGGAGATGGACC 59.740 42.308 0.00 0.00 30.92 4.46
181 182 6.954232 TCGTAAAAATAAAGGAGATGGACCT 58.046 36.000 0.00 0.00 39.69 3.85
182 183 8.081517 TCGTAAAAATAAAGGAGATGGACCTA 57.918 34.615 0.00 0.00 36.67 3.08
183 184 8.711170 TCGTAAAAATAAAGGAGATGGACCTAT 58.289 33.333 0.00 0.00 36.67 2.57
184 185 9.338622 CGTAAAAATAAAGGAGATGGACCTATT 57.661 33.333 0.00 0.00 36.67 1.73
187 188 8.525290 AAAATAAAGGAGATGGACCTATTGTG 57.475 34.615 0.00 0.00 36.67 3.33
188 189 4.510167 AAAGGAGATGGACCTATTGTGG 57.490 45.455 0.00 0.00 36.67 4.17
189 190 3.136641 AGGAGATGGACCTATTGTGGT 57.863 47.619 0.00 0.00 44.10 4.16
200 201 4.836825 ACCTATTGTGGTCTTCAGTGATG 58.163 43.478 0.00 0.00 34.86 3.07
201 202 4.194640 CCTATTGTGGTCTTCAGTGATGG 58.805 47.826 6.21 0.00 0.00 3.51
202 203 3.795688 ATTGTGGTCTTCAGTGATGGT 57.204 42.857 6.21 0.00 0.00 3.55
203 204 3.576078 TTGTGGTCTTCAGTGATGGTT 57.424 42.857 6.21 0.00 0.00 3.67
204 205 2.849942 TGTGGTCTTCAGTGATGGTTG 58.150 47.619 6.21 0.00 0.00 3.77
205 206 2.172505 TGTGGTCTTCAGTGATGGTTGT 59.827 45.455 6.21 0.00 0.00 3.32
206 207 3.214328 GTGGTCTTCAGTGATGGTTGTT 58.786 45.455 6.21 0.00 0.00 2.83
207 208 3.003689 GTGGTCTTCAGTGATGGTTGTTG 59.996 47.826 6.21 0.00 0.00 3.33
208 209 2.554032 GGTCTTCAGTGATGGTTGTTGG 59.446 50.000 6.21 0.00 0.00 3.77
209 210 2.554032 GTCTTCAGTGATGGTTGTTGGG 59.446 50.000 6.21 0.00 0.00 4.12
210 211 2.174639 TCTTCAGTGATGGTTGTTGGGT 59.825 45.455 6.21 0.00 0.00 4.51
211 212 2.746279 TCAGTGATGGTTGTTGGGTT 57.254 45.000 0.00 0.00 0.00 4.11
212 213 3.866703 TCAGTGATGGTTGTTGGGTTA 57.133 42.857 0.00 0.00 0.00 2.85
213 214 4.171878 TCAGTGATGGTTGTTGGGTTAA 57.828 40.909 0.00 0.00 0.00 2.01
214 215 4.537751 TCAGTGATGGTTGTTGGGTTAAA 58.462 39.130 0.00 0.00 0.00 1.52
215 216 4.956700 TCAGTGATGGTTGTTGGGTTAAAA 59.043 37.500 0.00 0.00 0.00 1.52
216 217 5.068460 TCAGTGATGGTTGTTGGGTTAAAAG 59.932 40.000 0.00 0.00 0.00 2.27
217 218 4.055360 GTGATGGTTGTTGGGTTAAAAGC 58.945 43.478 0.00 0.00 0.00 3.51
218 219 3.706594 TGATGGTTGTTGGGTTAAAAGCA 59.293 39.130 0.00 0.00 34.84 3.91
219 220 4.346418 TGATGGTTGTTGGGTTAAAAGCAT 59.654 37.500 0.00 0.00 41.88 3.79
220 221 4.065321 TGGTTGTTGGGTTAAAAGCATG 57.935 40.909 0.00 0.00 0.00 4.06
221 222 3.452627 TGGTTGTTGGGTTAAAAGCATGT 59.547 39.130 0.00 0.00 0.00 3.21
222 223 3.807071 GGTTGTTGGGTTAAAAGCATGTG 59.193 43.478 0.00 0.00 0.00 3.21
223 224 4.438148 GTTGTTGGGTTAAAAGCATGTGT 58.562 39.130 0.00 0.00 0.00 3.72
224 225 4.744795 TGTTGGGTTAAAAGCATGTGTT 57.255 36.364 0.00 0.00 0.00 3.32
225 226 5.854010 TGTTGGGTTAAAAGCATGTGTTA 57.146 34.783 0.00 0.00 0.00 2.41
226 227 6.412362 TGTTGGGTTAAAAGCATGTGTTAT 57.588 33.333 0.00 0.00 0.00 1.89
227 228 6.219473 TGTTGGGTTAAAAGCATGTGTTATG 58.781 36.000 0.00 0.00 0.00 1.90
228 229 6.183360 TGTTGGGTTAAAAGCATGTGTTATGT 60.183 34.615 0.00 0.00 0.00 2.29
229 230 6.412362 TGGGTTAAAAGCATGTGTTATGTT 57.588 33.333 0.00 0.00 0.00 2.71
230 231 6.821388 TGGGTTAAAAGCATGTGTTATGTTT 58.179 32.000 0.00 0.00 0.00 2.83
231 232 7.275920 TGGGTTAAAAGCATGTGTTATGTTTT 58.724 30.769 0.00 0.00 34.66 2.43
232 233 7.439655 TGGGTTAAAAGCATGTGTTATGTTTTC 59.560 33.333 0.00 0.00 32.59 2.29
233 234 7.655732 GGGTTAAAAGCATGTGTTATGTTTTCT 59.344 33.333 0.00 0.00 32.59 2.52
234 235 8.699749 GGTTAAAAGCATGTGTTATGTTTTCTC 58.300 33.333 0.00 0.00 32.59 2.87
235 236 9.463443 GTTAAAAGCATGTGTTATGTTTTCTCT 57.537 29.630 0.00 0.00 32.59 3.10
236 237 9.677567 TTAAAAGCATGTGTTATGTTTTCTCTC 57.322 29.630 0.00 0.00 32.59 3.20
237 238 5.886960 AGCATGTGTTATGTTTTCTCTCC 57.113 39.130 0.00 0.00 0.00 3.71
238 239 4.702131 AGCATGTGTTATGTTTTCTCTCCC 59.298 41.667 0.00 0.00 0.00 4.30
239 240 4.437390 GCATGTGTTATGTTTTCTCTCCCG 60.437 45.833 0.00 0.00 0.00 5.14
240 241 4.345859 TGTGTTATGTTTTCTCTCCCGT 57.654 40.909 0.00 0.00 0.00 5.28
241 242 4.710324 TGTGTTATGTTTTCTCTCCCGTT 58.290 39.130 0.00 0.00 0.00 4.44
242 243 4.513692 TGTGTTATGTTTTCTCTCCCGTTG 59.486 41.667 0.00 0.00 0.00 4.10
243 244 3.500680 TGTTATGTTTTCTCTCCCGTTGC 59.499 43.478 0.00 0.00 0.00 4.17
244 245 2.270352 ATGTTTTCTCTCCCGTTGCA 57.730 45.000 0.00 0.00 0.00 4.08
245 246 2.045561 TGTTTTCTCTCCCGTTGCAA 57.954 45.000 0.00 0.00 0.00 4.08
246 247 1.673920 TGTTTTCTCTCCCGTTGCAAC 59.326 47.619 19.89 19.89 0.00 4.17
256 257 4.683334 GTTGCAACGCACGGGCTC 62.683 66.667 14.90 0.00 38.71 4.70
257 258 4.927782 TTGCAACGCACGGGCTCT 62.928 61.111 8.62 0.00 38.71 4.09
258 259 4.927782 TGCAACGCACGGGCTCTT 62.928 61.111 8.62 0.00 38.10 2.85
259 260 3.660111 GCAACGCACGGGCTCTTT 61.660 61.111 8.62 0.00 38.10 2.52
260 261 2.252260 CAACGCACGGGCTCTTTG 59.748 61.111 8.62 4.45 38.10 2.77
261 262 3.660111 AACGCACGGGCTCTTTGC 61.660 61.111 8.62 0.00 41.94 3.68
280 281 8.635765 TCTTTGCCAGAGTATTGTCTAAAAAT 57.364 30.769 0.00 0.00 0.00 1.82
282 283 9.994432 CTTTGCCAGAGTATTGTCTAAAAATAG 57.006 33.333 0.00 0.00 0.00 1.73
397 400 1.792006 GTGTTGGTCGACCGATTTCT 58.208 50.000 27.20 0.00 39.43 2.52
414 417 2.209838 TCTTGTCGCTCGATCAATCC 57.790 50.000 0.00 0.00 0.00 3.01
449 452 5.050972 AGCTAGTTCGTCAATAATAAAGCGC 60.051 40.000 0.00 0.00 0.00 5.92
458 461 4.207635 TCAATAATAAAGCGCGAACCGTAG 59.792 41.667 12.10 0.00 39.71 3.51
461 464 1.895051 TAAAGCGCGAACCGTAGTAC 58.105 50.000 12.10 0.00 39.71 2.73
462 465 0.242017 AAAGCGCGAACCGTAGTACT 59.758 50.000 12.10 0.00 39.71 2.73
463 466 1.086696 AAGCGCGAACCGTAGTACTA 58.913 50.000 12.10 0.00 39.71 1.82
464 467 0.654683 AGCGCGAACCGTAGTACTAG 59.345 55.000 12.10 0.00 39.71 2.57
465 468 0.316524 GCGCGAACCGTAGTACTAGG 60.317 60.000 12.10 14.39 39.71 3.02
466 469 0.316524 CGCGAACCGTAGTACTAGGC 60.317 60.000 15.64 6.52 0.00 3.93
467 470 0.734889 GCGAACCGTAGTACTAGGCA 59.265 55.000 15.64 0.00 0.00 4.75
482 486 8.694581 AGTACTAGGCAAGTAGTCTTATAAGG 57.305 38.462 12.54 0.00 39.72 2.69
499 503 0.324645 AGGAACCAATGGCATGACCC 60.325 55.000 0.00 0.00 37.83 4.46
545 557 2.802787 ATCTAGGAAATGACCTCGCG 57.197 50.000 0.00 0.00 41.00 5.87
610 622 9.822185 GCAATAAATCCATGGAAAGAAAGTTAT 57.178 29.630 20.67 7.12 0.00 1.89
638 650 2.679336 ACCTTTTGACGCTTGTAACGTT 59.321 40.909 5.88 5.88 45.24 3.99
798 1133 1.676014 CGGGTTAAGTGCCAGGAAGAG 60.676 57.143 0.00 0.00 0.00 2.85
817 1152 2.741985 CGCAACGCAGGTGATCCA 60.742 61.111 0.00 0.00 35.89 3.41
823 1158 1.198713 ACGCAGGTGATCCATCTTCT 58.801 50.000 0.00 0.00 35.89 2.85
824 1159 1.137872 ACGCAGGTGATCCATCTTCTC 59.862 52.381 0.00 0.00 35.89 2.87
825 1160 1.411977 CGCAGGTGATCCATCTTCTCT 59.588 52.381 0.00 0.00 35.89 3.10
902 1238 1.441016 GTACGACGAACGAACGCCT 60.441 57.895 0.00 0.00 45.77 5.52
903 1239 1.440850 TACGACGAACGAACGCCTG 60.441 57.895 0.00 0.00 45.77 4.85
963 1306 1.891919 GCAAGGAGAACGCACACCA 60.892 57.895 0.00 0.00 0.00 4.17
965 1308 1.943968 GCAAGGAGAACGCACACCATA 60.944 52.381 0.00 0.00 0.00 2.74
1218 1586 1.927527 ACCTGAGGAGCAGCCCAAT 60.928 57.895 4.99 0.00 43.50 3.16
1326 1703 1.149627 ACCTAACGTGCAGCCCAAA 59.850 52.632 0.00 0.00 0.00 3.28
1333 1710 3.884774 TGCAGCCCAAACCGGAGT 61.885 61.111 9.46 0.00 36.56 3.85
1494 1895 2.359967 GCCGCCTCTTCCTACAGGT 61.360 63.158 0.00 0.00 36.34 4.00
1546 1947 1.599047 CCCAAGACAGACGAGCCAT 59.401 57.895 0.00 0.00 0.00 4.40
1559 1960 2.124983 GCCATCGAAGCCAGAGCA 60.125 61.111 0.00 0.00 43.56 4.26
1893 2308 4.706035 ACACCCGTGATTTGTTTGTACTA 58.294 39.130 0.96 0.00 0.00 1.82
1894 2309 4.512571 ACACCCGTGATTTGTTTGTACTAC 59.487 41.667 0.96 0.00 0.00 2.73
1931 2355 4.472833 AGCTATTGGGAGTGTTTGAGATCT 59.527 41.667 0.00 0.00 0.00 2.75
1993 2575 5.121768 GTGTAACAGTTGTTGTGAAGTGAGT 59.878 40.000 7.73 0.00 40.74 3.41
2017 2599 3.335356 ATGGCCAGGTCTCTTGCGG 62.335 63.158 13.05 0.00 32.96 5.69
2019 2601 2.743928 GCCAGGTCTCTTGCGGTG 60.744 66.667 0.00 0.00 0.00 4.94
2064 2646 5.665459 AGTTCTAGACTTGATATGTGTGGC 58.335 41.667 0.00 0.00 33.92 5.01
2065 2647 4.307443 TCTAGACTTGATATGTGTGGCG 57.693 45.455 0.00 0.00 0.00 5.69
2066 2648 2.315925 AGACTTGATATGTGTGGCGG 57.684 50.000 0.00 0.00 0.00 6.13
2073 2655 3.485394 TGATATGTGTGGCGGCATATTT 58.515 40.909 17.19 6.77 38.12 1.40
2080 2662 5.105752 TGTGTGGCGGCATATTTTAAATTC 58.894 37.500 17.19 0.00 0.00 2.17
2084 2666 6.478344 TGTGGCGGCATATTTTAAATTCATTC 59.522 34.615 17.19 0.00 0.00 2.67
2089 2671 7.599998 GCGGCATATTTTAAATTCATTCCAGAT 59.400 33.333 0.00 0.00 0.00 2.90
2105 2688 8.978539 TCATTCCAGATTTTTCGACGATATTAG 58.021 33.333 0.00 0.00 0.00 1.73
2121 2704 7.861630 ACGATATTAGTTCAATTACATGGCAC 58.138 34.615 0.00 0.00 0.00 5.01
2134 2717 3.747976 GGCACGCCCATCAACCAC 61.748 66.667 0.00 0.00 0.00 4.16
2173 2757 8.826546 CGATTTCGTCAATATCAAAATCTGTT 57.173 30.769 0.00 0.00 35.29 3.16
2207 2792 6.441093 TCCTTGATTCGAAGGATTTTCATG 57.559 37.500 3.35 3.82 45.52 3.07
2218 2803 6.091169 CGAAGGATTTTCATGTGATTTTTGGG 59.909 38.462 0.00 0.00 0.00 4.12
2219 2804 6.438186 AGGATTTTCATGTGATTTTTGGGT 57.562 33.333 0.00 0.00 0.00 4.51
2237 2823 8.950007 TTTTGGGTGTTAGAATCCTTAAGAAT 57.050 30.769 3.36 0.00 0.00 2.40
2264 2851 9.642327 TTTTCTATGTTGAATGTTTGATCCATG 57.358 29.630 0.00 0.00 0.00 3.66
2269 2856 6.193504 TGTTGAATGTTTGATCCATGGGATA 58.806 36.000 13.02 0.00 43.27 2.59
2356 2946 5.826737 TGCAATCAAACAAATCAAAACCCAT 59.173 32.000 0.00 0.00 0.00 4.00
2381 2971 5.698104 AGAATTGAGATGGGCATGACATTA 58.302 37.500 0.00 0.00 0.00 1.90
2426 3016 3.426695 CCGCACTTTTAGAATCCTGCAAG 60.427 47.826 0.00 0.00 0.00 4.01
2448 3038 2.039084 TCAAAGAGGCCCTCAGTCTTTC 59.961 50.000 14.46 0.00 38.24 2.62
2458 3048 2.928757 CCTCAGTCTTTCAAGATGCTCG 59.071 50.000 0.00 0.00 37.39 5.03
2461 3051 5.134202 TCAGTCTTTCAAGATGCTCGTAA 57.866 39.130 0.00 0.00 37.39 3.18
2485 3081 0.947660 AGCGTGTGTGTGAGCATCTG 60.948 55.000 0.00 0.00 34.92 2.90
2505 3101 7.201266 GCATCTGCGTTTATTTTGTGTTTCTAG 60.201 37.037 0.00 0.00 0.00 2.43
2510 3106 9.522804 TGCGTTTATTTTGTGTTTCTAGAAAAT 57.477 25.926 19.30 10.62 37.33 1.82
2543 3139 0.322546 GTCTCCCAAAGCCCGAACAT 60.323 55.000 0.00 0.00 0.00 2.71
2586 3182 8.456221 AGAAACCCAAATTATTATTTTCCCCA 57.544 30.769 0.00 0.00 31.63 4.96
2650 3434 1.887707 GCACCCGAATAGCCCGAAG 60.888 63.158 0.00 0.00 0.00 3.79
2668 3452 1.151668 AGCATGAACAGACAAGCGAC 58.848 50.000 0.00 0.00 39.08 5.19
2671 3455 1.462283 CATGAACAGACAAGCGACCAG 59.538 52.381 0.00 0.00 0.00 4.00
2778 4522 4.729918 CCCAGCCCACCAGAGCAC 62.730 72.222 0.00 0.00 0.00 4.40
2783 4527 2.831770 CCCACCAGAGCACACACT 59.168 61.111 0.00 0.00 0.00 3.55
2784 4528 1.598962 CCCACCAGAGCACACACTG 60.599 63.158 0.00 0.00 34.59 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.134175 CCCTCGCTTTCTCTCACTCTC 59.866 57.143 0.00 0.00 0.00 3.20
1 2 1.181786 CCCTCGCTTTCTCTCACTCT 58.818 55.000 0.00 0.00 0.00 3.24
2 3 1.134175 CTCCCTCGCTTTCTCTCACTC 59.866 57.143 0.00 0.00 0.00 3.51
3 4 1.181786 CTCCCTCGCTTTCTCTCACT 58.818 55.000 0.00 0.00 0.00 3.41
4 5 1.134175 CTCTCCCTCGCTTTCTCTCAC 59.866 57.143 0.00 0.00 0.00 3.51
5 6 1.468985 CTCTCCCTCGCTTTCTCTCA 58.531 55.000 0.00 0.00 0.00 3.27
6 7 0.744281 CCTCTCCCTCGCTTTCTCTC 59.256 60.000 0.00 0.00 0.00 3.20
7 8 0.686112 CCCTCTCCCTCGCTTTCTCT 60.686 60.000 0.00 0.00 0.00 3.10
8 9 0.684805 TCCCTCTCCCTCGCTTTCTC 60.685 60.000 0.00 0.00 0.00 2.87
9 10 0.686112 CTCCCTCTCCCTCGCTTTCT 60.686 60.000 0.00 0.00 0.00 2.52
10 11 0.684805 TCTCCCTCTCCCTCGCTTTC 60.685 60.000 0.00 0.00 0.00 2.62
11 12 0.686112 CTCTCCCTCTCCCTCGCTTT 60.686 60.000 0.00 0.00 0.00 3.51
12 13 1.076339 CTCTCCCTCTCCCTCGCTT 60.076 63.158 0.00 0.00 0.00 4.68
13 14 2.600731 CTCTCCCTCTCCCTCGCT 59.399 66.667 0.00 0.00 0.00 4.93
14 15 2.520741 CCTCTCCCTCTCCCTCGC 60.521 72.222 0.00 0.00 0.00 5.03
15 16 2.197324 CCCTCTCCCTCTCCCTCG 59.803 72.222 0.00 0.00 0.00 4.63
16 17 1.541672 CTCCCTCTCCCTCTCCCTC 59.458 68.421 0.00 0.00 0.00 4.30
17 18 2.018086 CCTCCCTCTCCCTCTCCCT 61.018 68.421 0.00 0.00 0.00 4.20
18 19 2.015726 TCCTCCCTCTCCCTCTCCC 61.016 68.421 0.00 0.00 0.00 4.30
19 20 0.996762 TCTCCTCCCTCTCCCTCTCC 60.997 65.000 0.00 0.00 0.00 3.71
20 21 0.478507 CTCTCCTCCCTCTCCCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
21 22 0.047176 TCTCTCCTCCCTCTCCCTCT 59.953 60.000 0.00 0.00 0.00 3.69
22 23 0.478507 CTCTCTCCTCCCTCTCCCTC 59.521 65.000 0.00 0.00 0.00 4.30
23 24 0.998945 CCTCTCTCCTCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
24 25 0.996762 TCCTCTCTCCTCCCTCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
25 26 0.930726 TTCCTCTCTCCTCCCTCTCC 59.069 60.000 0.00 0.00 0.00 3.71
26 27 1.850345 TCTTCCTCTCTCCTCCCTCTC 59.150 57.143 0.00 0.00 0.00 3.20
27 28 1.852965 CTCTTCCTCTCTCCTCCCTCT 59.147 57.143 0.00 0.00 0.00 3.69
28 29 1.850345 TCTCTTCCTCTCTCCTCCCTC 59.150 57.143 0.00 0.00 0.00 4.30
29 30 1.852965 CTCTCTTCCTCTCTCCTCCCT 59.147 57.143 0.00 0.00 0.00 4.20
30 31 1.850345 TCTCTCTTCCTCTCTCCTCCC 59.150 57.143 0.00 0.00 0.00 4.30
31 32 2.777692 TCTCTCTCTTCCTCTCTCCTCC 59.222 54.545 0.00 0.00 0.00 4.30
32 33 3.741388 CGTCTCTCTCTTCCTCTCTCCTC 60.741 56.522 0.00 0.00 0.00 3.71
33 34 2.170607 CGTCTCTCTCTTCCTCTCTCCT 59.829 54.545 0.00 0.00 0.00 3.69
34 35 2.561569 CGTCTCTCTCTTCCTCTCTCC 58.438 57.143 0.00 0.00 0.00 3.71
35 36 1.940613 GCGTCTCTCTCTTCCTCTCTC 59.059 57.143 0.00 0.00 0.00 3.20
36 37 1.408266 GGCGTCTCTCTCTTCCTCTCT 60.408 57.143 0.00 0.00 0.00 3.10
37 38 1.021968 GGCGTCTCTCTCTTCCTCTC 58.978 60.000 0.00 0.00 0.00 3.20
38 39 0.623723 AGGCGTCTCTCTCTTCCTCT 59.376 55.000 0.00 0.00 0.00 3.69
39 40 1.470051 AAGGCGTCTCTCTCTTCCTC 58.530 55.000 0.00 0.00 0.00 3.71
40 41 2.650322 CTAAGGCGTCTCTCTCTTCCT 58.350 52.381 0.00 0.00 0.00 3.36
41 42 1.679153 CCTAAGGCGTCTCTCTCTTCC 59.321 57.143 0.00 0.00 0.00 3.46
42 43 2.645802 TCCTAAGGCGTCTCTCTCTTC 58.354 52.381 0.00 0.00 0.00 2.87
43 44 2.810870 TCCTAAGGCGTCTCTCTCTT 57.189 50.000 0.00 0.00 0.00 2.85
44 45 3.306472 AATCCTAAGGCGTCTCTCTCT 57.694 47.619 0.00 0.00 0.00 3.10
45 46 4.261698 GGTTAATCCTAAGGCGTCTCTCTC 60.262 50.000 0.00 0.00 0.00 3.20
46 47 3.637694 GGTTAATCCTAAGGCGTCTCTCT 59.362 47.826 0.00 0.00 0.00 3.10
47 48 3.383825 TGGTTAATCCTAAGGCGTCTCTC 59.616 47.826 0.00 0.00 37.07 3.20
48 49 3.371965 TGGTTAATCCTAAGGCGTCTCT 58.628 45.455 0.00 0.00 37.07 3.10
49 50 3.814005 TGGTTAATCCTAAGGCGTCTC 57.186 47.619 0.00 0.00 37.07 3.36
50 51 6.042781 TGAATATGGTTAATCCTAAGGCGTCT 59.957 38.462 0.00 0.00 37.07 4.18
51 52 6.228258 TGAATATGGTTAATCCTAAGGCGTC 58.772 40.000 0.00 0.00 37.07 5.19
52 53 6.182507 TGAATATGGTTAATCCTAAGGCGT 57.817 37.500 0.00 0.00 37.07 5.68
53 54 7.012894 TGTTTGAATATGGTTAATCCTAAGGCG 59.987 37.037 0.00 0.00 37.07 5.52
54 55 8.135529 GTGTTTGAATATGGTTAATCCTAAGGC 58.864 37.037 0.00 0.00 37.07 4.35
55 56 8.342634 CGTGTTTGAATATGGTTAATCCTAAGG 58.657 37.037 0.00 0.00 37.07 2.69
56 57 8.889717 ACGTGTTTGAATATGGTTAATCCTAAG 58.110 33.333 0.00 0.00 37.07 2.18
57 58 8.795842 ACGTGTTTGAATATGGTTAATCCTAA 57.204 30.769 0.00 0.00 37.07 2.69
58 59 8.795842 AACGTGTTTGAATATGGTTAATCCTA 57.204 30.769 0.00 0.00 37.07 2.94
59 60 7.696992 AACGTGTTTGAATATGGTTAATCCT 57.303 32.000 0.00 0.00 37.07 3.24
60 61 8.751302 AAAACGTGTTTGAATATGGTTAATCC 57.249 30.769 0.00 0.00 32.36 3.01
89 90 1.298859 GATGGCCTCGGTGTTCACAC 61.299 60.000 3.32 1.10 45.72 3.82
90 91 1.003839 GATGGCCTCGGTGTTCACA 60.004 57.895 3.32 0.00 0.00 3.58
91 92 1.003839 TGATGGCCTCGGTGTTCAC 60.004 57.895 3.32 0.00 0.00 3.18
92 93 1.003839 GTGATGGCCTCGGTGTTCA 60.004 57.895 3.32 0.00 0.00 3.18
93 94 1.745489 GGTGATGGCCTCGGTGTTC 60.745 63.158 3.32 0.00 0.00 3.18
94 95 2.351276 GGTGATGGCCTCGGTGTT 59.649 61.111 3.32 0.00 0.00 3.32
95 96 4.082523 CGGTGATGGCCTCGGTGT 62.083 66.667 3.32 0.00 0.00 4.16
96 97 4.838152 CCGGTGATGGCCTCGGTG 62.838 72.222 3.32 0.00 37.92 4.94
98 99 4.838152 CACCGGTGATGGCCTCGG 62.838 72.222 31.31 12.00 46.95 4.63
99 100 3.723235 CTCACCGGTGATGGCCTCG 62.723 68.421 36.21 19.54 39.13 4.63
100 101 2.187946 CTCACCGGTGATGGCCTC 59.812 66.667 36.21 0.00 39.13 4.70
101 102 3.402681 CCTCACCGGTGATGGCCT 61.403 66.667 36.21 0.00 39.13 5.19
102 103 4.489771 CCCTCACCGGTGATGGCC 62.490 72.222 36.24 0.00 38.28 5.36
103 104 3.717294 ACCCTCACCGGTGATGGC 61.717 66.667 42.05 0.00 45.56 4.40
109 110 0.471211 TCTTTCTCACCCTCACCGGT 60.471 55.000 0.00 0.00 36.18 5.28
110 111 0.247736 CTCTTTCTCACCCTCACCGG 59.752 60.000 0.00 0.00 0.00 5.28
111 112 0.247736 CCTCTTTCTCACCCTCACCG 59.752 60.000 0.00 0.00 0.00 4.94
112 113 1.645710 TCCTCTTTCTCACCCTCACC 58.354 55.000 0.00 0.00 0.00 4.02
113 114 4.682050 GCTTATCCTCTTTCTCACCCTCAC 60.682 50.000 0.00 0.00 0.00 3.51
114 115 3.452627 GCTTATCCTCTTTCTCACCCTCA 59.547 47.826 0.00 0.00 0.00 3.86
115 116 3.491792 CGCTTATCCTCTTTCTCACCCTC 60.492 52.174 0.00 0.00 0.00 4.30
116 117 2.432510 CGCTTATCCTCTTTCTCACCCT 59.567 50.000 0.00 0.00 0.00 4.34
117 118 2.483889 CCGCTTATCCTCTTTCTCACCC 60.484 54.545 0.00 0.00 0.00 4.61
118 119 2.827652 CCGCTTATCCTCTTTCTCACC 58.172 52.381 0.00 0.00 0.00 4.02
119 120 2.205911 GCCGCTTATCCTCTTTCTCAC 58.794 52.381 0.00 0.00 0.00 3.51
120 121 1.831106 TGCCGCTTATCCTCTTTCTCA 59.169 47.619 0.00 0.00 0.00 3.27
121 122 2.604046 TGCCGCTTATCCTCTTTCTC 57.396 50.000 0.00 0.00 0.00 2.87
122 123 2.027192 TGTTGCCGCTTATCCTCTTTCT 60.027 45.455 0.00 0.00 0.00 2.52
123 124 2.096013 GTGTTGCCGCTTATCCTCTTTC 59.904 50.000 0.00 0.00 0.00 2.62
124 125 2.084546 GTGTTGCCGCTTATCCTCTTT 58.915 47.619 0.00 0.00 0.00 2.52
125 126 1.003118 TGTGTTGCCGCTTATCCTCTT 59.997 47.619 0.00 0.00 0.00 2.85
126 127 0.613260 TGTGTTGCCGCTTATCCTCT 59.387 50.000 0.00 0.00 0.00 3.69
127 128 1.448985 TTGTGTTGCCGCTTATCCTC 58.551 50.000 0.00 0.00 0.00 3.71
128 129 1.904287 TTTGTGTTGCCGCTTATCCT 58.096 45.000 0.00 0.00 0.00 3.24
129 130 2.939460 ATTTGTGTTGCCGCTTATCC 57.061 45.000 0.00 0.00 0.00 2.59
130 131 5.168526 TCATATTTGTGTTGCCGCTTATC 57.831 39.130 0.00 0.00 0.00 1.75
131 132 5.522456 CATCATATTTGTGTTGCCGCTTAT 58.478 37.500 0.00 0.00 0.00 1.73
132 133 4.733230 GCATCATATTTGTGTTGCCGCTTA 60.733 41.667 0.00 0.00 38.34 3.09
133 134 3.772932 CATCATATTTGTGTTGCCGCTT 58.227 40.909 0.00 0.00 0.00 4.68
134 135 2.480073 GCATCATATTTGTGTTGCCGCT 60.480 45.455 0.00 0.00 38.34 5.52
135 136 1.854126 GCATCATATTTGTGTTGCCGC 59.146 47.619 0.42 0.00 38.34 6.53
138 139 3.181497 ACGAGGCATCATATTTGTGTTGC 60.181 43.478 0.00 2.75 41.70 4.17
139 140 4.621068 ACGAGGCATCATATTTGTGTTG 57.379 40.909 0.00 0.00 0.00 3.33
140 141 6.751514 TTTACGAGGCATCATATTTGTGTT 57.248 33.333 0.00 0.00 0.00 3.32
141 142 6.751514 TTTTACGAGGCATCATATTTGTGT 57.248 33.333 0.00 0.00 0.00 3.72
142 143 9.729023 TTATTTTTACGAGGCATCATATTTGTG 57.271 29.630 0.00 0.00 0.00 3.33
145 146 9.965824 CCTTTATTTTTACGAGGCATCATATTT 57.034 29.630 0.00 0.00 0.00 1.40
146 147 9.349713 TCCTTTATTTTTACGAGGCATCATATT 57.650 29.630 0.00 0.00 0.00 1.28
147 148 8.918202 TCCTTTATTTTTACGAGGCATCATAT 57.082 30.769 0.00 0.00 0.00 1.78
148 149 8.208224 TCTCCTTTATTTTTACGAGGCATCATA 58.792 33.333 0.00 0.00 0.00 2.15
149 150 7.054124 TCTCCTTTATTTTTACGAGGCATCAT 58.946 34.615 0.00 0.00 0.00 2.45
150 151 6.411376 TCTCCTTTATTTTTACGAGGCATCA 58.589 36.000 0.00 0.00 0.00 3.07
151 152 6.920569 TCTCCTTTATTTTTACGAGGCATC 57.079 37.500 0.00 0.00 0.00 3.91
152 153 6.263168 CCATCTCCTTTATTTTTACGAGGCAT 59.737 38.462 0.00 0.00 0.00 4.40
153 154 5.588648 CCATCTCCTTTATTTTTACGAGGCA 59.411 40.000 0.00 0.00 0.00 4.75
154 155 5.820947 TCCATCTCCTTTATTTTTACGAGGC 59.179 40.000 0.00 0.00 0.00 4.70
155 156 6.260271 GGTCCATCTCCTTTATTTTTACGAGG 59.740 42.308 0.00 0.00 0.00 4.63
156 157 7.048512 AGGTCCATCTCCTTTATTTTTACGAG 58.951 38.462 0.00 0.00 30.18 4.18
157 158 6.954232 AGGTCCATCTCCTTTATTTTTACGA 58.046 36.000 0.00 0.00 30.18 3.43
158 159 8.904099 ATAGGTCCATCTCCTTTATTTTTACG 57.096 34.615 0.00 0.00 36.60 3.18
161 162 8.971073 CACAATAGGTCCATCTCCTTTATTTTT 58.029 33.333 0.00 0.00 36.60 1.94
162 163 7.561356 CCACAATAGGTCCATCTCCTTTATTTT 59.439 37.037 0.00 0.00 36.60 1.82
163 164 7.062957 CCACAATAGGTCCATCTCCTTTATTT 58.937 38.462 0.00 0.00 36.60 1.40
164 165 6.160459 ACCACAATAGGTCCATCTCCTTTATT 59.840 38.462 0.00 0.00 37.28 1.40
165 166 5.672194 ACCACAATAGGTCCATCTCCTTTAT 59.328 40.000 0.00 0.00 37.28 1.40
166 167 5.036916 ACCACAATAGGTCCATCTCCTTTA 58.963 41.667 0.00 0.00 37.28 1.85
167 168 3.852578 ACCACAATAGGTCCATCTCCTTT 59.147 43.478 0.00 0.00 37.28 3.11
168 169 3.464828 ACCACAATAGGTCCATCTCCTT 58.535 45.455 0.00 0.00 37.28 3.36
169 170 3.136641 ACCACAATAGGTCCATCTCCT 57.863 47.619 0.00 0.00 37.28 3.69
178 179 4.323792 CCATCACTGAAGACCACAATAGGT 60.324 45.833 0.00 0.00 46.82 3.08
179 180 4.194640 CCATCACTGAAGACCACAATAGG 58.805 47.826 0.00 0.00 0.00 2.57
180 181 4.836825 ACCATCACTGAAGACCACAATAG 58.163 43.478 0.00 0.00 0.00 1.73
181 182 4.908601 ACCATCACTGAAGACCACAATA 57.091 40.909 0.00 0.00 0.00 1.90
182 183 3.795688 ACCATCACTGAAGACCACAAT 57.204 42.857 0.00 0.00 0.00 2.71
183 184 3.213506 CAACCATCACTGAAGACCACAA 58.786 45.455 0.00 0.00 0.00 3.33
184 185 2.172505 ACAACCATCACTGAAGACCACA 59.827 45.455 0.00 0.00 0.00 4.17
185 186 2.851195 ACAACCATCACTGAAGACCAC 58.149 47.619 0.00 0.00 0.00 4.16
186 187 3.213506 CAACAACCATCACTGAAGACCA 58.786 45.455 0.00 0.00 0.00 4.02
187 188 2.554032 CCAACAACCATCACTGAAGACC 59.446 50.000 0.00 0.00 0.00 3.85
188 189 2.554032 CCCAACAACCATCACTGAAGAC 59.446 50.000 0.00 0.00 0.00 3.01
189 190 2.174639 ACCCAACAACCATCACTGAAGA 59.825 45.455 0.00 0.00 0.00 2.87
190 191 2.586425 ACCCAACAACCATCACTGAAG 58.414 47.619 0.00 0.00 0.00 3.02
191 192 2.746279 ACCCAACAACCATCACTGAA 57.254 45.000 0.00 0.00 0.00 3.02
192 193 2.746279 AACCCAACAACCATCACTGA 57.254 45.000 0.00 0.00 0.00 3.41
193 194 4.927978 TTTAACCCAACAACCATCACTG 57.072 40.909 0.00 0.00 0.00 3.66
194 195 4.202212 GCTTTTAACCCAACAACCATCACT 60.202 41.667 0.00 0.00 0.00 3.41
195 196 4.055360 GCTTTTAACCCAACAACCATCAC 58.945 43.478 0.00 0.00 0.00 3.06
196 197 3.706594 TGCTTTTAACCCAACAACCATCA 59.293 39.130 0.00 0.00 0.00 3.07
197 198 4.329462 TGCTTTTAACCCAACAACCATC 57.671 40.909 0.00 0.00 0.00 3.51
198 199 4.102367 ACATGCTTTTAACCCAACAACCAT 59.898 37.500 0.00 0.00 0.00 3.55
199 200 3.452627 ACATGCTTTTAACCCAACAACCA 59.547 39.130 0.00 0.00 0.00 3.67
200 201 3.807071 CACATGCTTTTAACCCAACAACC 59.193 43.478 0.00 0.00 0.00 3.77
201 202 4.438148 ACACATGCTTTTAACCCAACAAC 58.562 39.130 0.00 0.00 0.00 3.32
202 203 4.744795 ACACATGCTTTTAACCCAACAA 57.255 36.364 0.00 0.00 0.00 2.83
203 204 4.744795 AACACATGCTTTTAACCCAACA 57.255 36.364 0.00 0.00 0.00 3.33
204 205 6.220201 ACATAACACATGCTTTTAACCCAAC 58.780 36.000 0.00 0.00 0.00 3.77
205 206 6.412362 ACATAACACATGCTTTTAACCCAA 57.588 33.333 0.00 0.00 0.00 4.12
206 207 6.412362 AACATAACACATGCTTTTAACCCA 57.588 33.333 0.00 0.00 0.00 4.51
207 208 7.655732 AGAAAACATAACACATGCTTTTAACCC 59.344 33.333 0.00 0.00 0.00 4.11
208 209 8.587952 AGAAAACATAACACATGCTTTTAACC 57.412 30.769 0.00 0.00 0.00 2.85
209 210 9.463443 AGAGAAAACATAACACATGCTTTTAAC 57.537 29.630 0.00 0.00 0.00 2.01
210 211 9.677567 GAGAGAAAACATAACACATGCTTTTAA 57.322 29.630 0.00 0.00 0.00 1.52
211 212 8.296713 GGAGAGAAAACATAACACATGCTTTTA 58.703 33.333 0.00 0.00 0.00 1.52
212 213 7.147976 GGAGAGAAAACATAACACATGCTTTT 58.852 34.615 0.00 0.00 0.00 2.27
213 214 6.294731 GGGAGAGAAAACATAACACATGCTTT 60.295 38.462 0.00 0.00 0.00 3.51
214 215 5.183904 GGGAGAGAAAACATAACACATGCTT 59.816 40.000 0.00 0.00 0.00 3.91
215 216 4.702131 GGGAGAGAAAACATAACACATGCT 59.298 41.667 0.00 0.00 0.00 3.79
216 217 4.437390 CGGGAGAGAAAACATAACACATGC 60.437 45.833 0.00 0.00 0.00 4.06
217 218 4.695455 ACGGGAGAGAAAACATAACACATG 59.305 41.667 0.00 0.00 0.00 3.21
218 219 4.906618 ACGGGAGAGAAAACATAACACAT 58.093 39.130 0.00 0.00 0.00 3.21
219 220 4.345859 ACGGGAGAGAAAACATAACACA 57.654 40.909 0.00 0.00 0.00 3.72
220 221 4.612939 GCAACGGGAGAGAAAACATAACAC 60.613 45.833 0.00 0.00 0.00 3.32
221 222 3.500680 GCAACGGGAGAGAAAACATAACA 59.499 43.478 0.00 0.00 0.00 2.41
222 223 3.500680 TGCAACGGGAGAGAAAACATAAC 59.499 43.478 0.00 0.00 0.00 1.89
223 224 3.745799 TGCAACGGGAGAGAAAACATAA 58.254 40.909 0.00 0.00 0.00 1.90
224 225 3.410631 TGCAACGGGAGAGAAAACATA 57.589 42.857 0.00 0.00 0.00 2.29
225 226 2.270352 TGCAACGGGAGAGAAAACAT 57.730 45.000 0.00 0.00 0.00 2.71
226 227 1.673920 GTTGCAACGGGAGAGAAAACA 59.326 47.619 14.90 0.00 0.00 2.83
227 228 2.401017 GTTGCAACGGGAGAGAAAAC 57.599 50.000 14.90 0.00 0.00 2.43
239 240 4.683334 GAGCCCGTGCGTTGCAAC 62.683 66.667 19.89 19.89 41.47 4.17
240 241 4.927782 AGAGCCCGTGCGTTGCAA 62.928 61.111 0.00 0.00 41.47 4.08
241 242 4.927782 AAGAGCCCGTGCGTTGCA 62.928 61.111 6.22 0.00 44.33 4.08
242 243 3.660111 AAAGAGCCCGTGCGTTGC 61.660 61.111 0.00 0.00 44.33 4.17
243 244 2.252260 CAAAGAGCCCGTGCGTTG 59.748 61.111 0.00 0.00 44.33 4.10
244 245 3.660111 GCAAAGAGCCCGTGCGTT 61.660 61.111 0.00 0.00 44.33 4.84
255 256 8.635765 ATTTTTAGACAATACTCTGGCAAAGA 57.364 30.769 0.00 0.00 0.00 2.52
256 257 9.994432 CTATTTTTAGACAATACTCTGGCAAAG 57.006 33.333 0.00 0.00 0.00 2.77
257 258 9.733556 TCTATTTTTAGACAATACTCTGGCAAA 57.266 29.630 0.00 0.00 0.00 3.68
258 259 9.905713 ATCTATTTTTAGACAATACTCTGGCAA 57.094 29.630 0.00 0.00 0.00 4.52
259 260 9.547753 GATCTATTTTTAGACAATACTCTGGCA 57.452 33.333 0.00 0.00 0.00 4.92
260 261 9.771534 AGATCTATTTTTAGACAATACTCTGGC 57.228 33.333 0.00 0.00 0.00 4.85
359 362 2.095969 CACGCACCATGAAATGTACGTT 60.096 45.455 0.00 0.00 44.81 3.99
366 369 1.269448 GACCAACACGCACCATGAAAT 59.731 47.619 0.00 0.00 0.00 2.17
373 376 3.343421 GGTCGACCAACACGCACC 61.343 66.667 29.75 0.00 35.64 5.01
397 400 0.534873 TGGGATTGATCGAGCGACAA 59.465 50.000 0.00 2.88 0.00 3.18
414 417 2.952978 ACGAACTAGCTCTACTCCATGG 59.047 50.000 4.97 4.97 0.00 3.66
449 452 2.421424 ACTTGCCTAGTACTACGGTTCG 59.579 50.000 15.52 9.14 34.56 3.95
458 461 8.688747 TCCTTATAAGACTACTTGCCTAGTAC 57.311 38.462 14.28 0.00 38.33 2.73
461 464 7.069578 TGGTTCCTTATAAGACTACTTGCCTAG 59.930 40.741 14.28 0.00 37.53 3.02
462 465 6.899075 TGGTTCCTTATAAGACTACTTGCCTA 59.101 38.462 14.28 0.00 37.53 3.93
463 466 5.724854 TGGTTCCTTATAAGACTACTTGCCT 59.275 40.000 14.28 0.00 37.53 4.75
464 467 5.985911 TGGTTCCTTATAAGACTACTTGCC 58.014 41.667 14.28 5.29 37.53 4.52
465 468 7.012421 CCATTGGTTCCTTATAAGACTACTTGC 59.988 40.741 14.28 0.00 37.53 4.01
466 469 7.012421 GCCATTGGTTCCTTATAAGACTACTTG 59.988 40.741 14.28 4.16 37.53 3.16
467 470 7.054751 GCCATTGGTTCCTTATAAGACTACTT 58.945 38.462 14.28 0.00 39.81 2.24
482 486 0.819582 CAGGGTCATGCCATTGGTTC 59.180 55.000 4.26 0.00 39.65 3.62
499 503 8.937634 AAAATAAAAATGAATAGAGGCTGCAG 57.062 30.769 10.11 10.11 0.00 4.41
610 622 2.539338 GCGTCAAAAGGTCGGCACA 61.539 57.895 0.00 0.00 0.00 4.57
674 686 2.365617 ACGTTGCCTACCCAGATATCTG 59.634 50.000 23.53 23.53 43.40 2.90
677 689 1.340248 CGACGTTGCCTACCCAGATAT 59.660 52.381 0.00 0.00 0.00 1.63
678 690 0.742505 CGACGTTGCCTACCCAGATA 59.257 55.000 0.00 0.00 0.00 1.98
781 1109 2.338500 CGTCTCTTCCTGGCACTTAAC 58.662 52.381 0.00 0.00 0.00 2.01
798 1133 2.740714 GGATCACCTGCGTTGCGTC 61.741 63.158 0.00 0.00 0.00 5.19
817 1152 4.021016 ACGTTAGTTGGCAGAAGAGAAGAT 60.021 41.667 0.00 0.00 0.00 2.40
823 1158 3.570975 TCAGTACGTTAGTTGGCAGAAGA 59.429 43.478 0.00 0.00 0.00 2.87
824 1159 3.909430 TCAGTACGTTAGTTGGCAGAAG 58.091 45.455 0.00 0.00 0.00 2.85
825 1160 4.053295 GTTCAGTACGTTAGTTGGCAGAA 58.947 43.478 0.00 0.00 0.00 3.02
902 1238 0.764890 AGGGCGAGGCATTTATAGCA 59.235 50.000 0.00 0.00 0.00 3.49
903 1239 1.443802 GAGGGCGAGGCATTTATAGC 58.556 55.000 0.00 0.00 0.00 2.97
963 1306 9.202273 GATCGCTGAACTAATCAAGAAGAATAT 57.798 33.333 0.00 0.00 37.67 1.28
965 1308 6.199908 CGATCGCTGAACTAATCAAGAAGAAT 59.800 38.462 0.26 0.00 37.67 2.40
1155 1523 3.702048 GGCAGCACCTCCGGTACA 61.702 66.667 0.00 0.00 32.11 2.90
1198 1566 4.792804 GGGCTGCTCCTCAGGTGC 62.793 72.222 11.08 11.08 43.06 5.01
1298 1666 2.746277 CGTTAGGTGTGGGCAGCC 60.746 66.667 1.26 1.26 43.61 4.85
1312 1689 3.591835 CGGTTTGGGCTGCACGTT 61.592 61.111 0.50 0.00 0.00 3.99
1442 1843 2.438434 GGATCCCACCTGTTGGCG 60.438 66.667 0.00 0.00 45.37 5.69
1454 1855 2.440247 CCGGCTTTGGTGGGATCC 60.440 66.667 1.92 1.92 0.00 3.36
1546 1947 2.999648 AGGCTGCTCTGGCTTCGA 61.000 61.111 0.00 0.00 40.00 3.71
1559 1960 3.382832 CGGTCGGAAGTGGAGGCT 61.383 66.667 0.00 0.00 0.00 4.58
1652 2053 2.572284 GAAGGTCACCGGTCGGAG 59.428 66.667 16.90 8.51 38.96 4.63
1874 2289 3.742369 ACGTAGTACAAACAAATCACGGG 59.258 43.478 0.38 0.00 41.94 5.28
1893 2308 0.675837 TAGCTCAGCAGGTACGACGT 60.676 55.000 5.52 5.52 0.00 4.34
1894 2309 0.663688 ATAGCTCAGCAGGTACGACG 59.336 55.000 0.00 0.00 35.41 5.12
1952 2376 5.007823 TGTTACACACGAACGAAAATCCATT 59.992 36.000 0.14 0.00 0.00 3.16
1954 2378 3.869832 TGTTACACACGAACGAAAATCCA 59.130 39.130 0.14 0.00 0.00 3.41
1955 2379 4.025480 ACTGTTACACACGAACGAAAATCC 60.025 41.667 0.14 0.00 0.00 3.01
1957 2381 5.163834 ACAACTGTTACACACGAACGAAAAT 60.164 36.000 0.14 0.00 0.00 1.82
1958 2382 4.152045 ACAACTGTTACACACGAACGAAAA 59.848 37.500 0.14 0.00 0.00 2.29
1959 2383 3.679025 ACAACTGTTACACACGAACGAAA 59.321 39.130 0.14 0.00 0.00 3.46
1960 2384 3.252400 ACAACTGTTACACACGAACGAA 58.748 40.909 0.14 0.00 0.00 3.85
1962 2386 3.181528 ACAACAACTGTTACACACGAACG 60.182 43.478 0.00 0.00 32.99 3.95
1963 2387 4.085884 CACAACAACTGTTACACACGAAC 58.914 43.478 0.00 0.00 35.47 3.95
1964 2388 3.995048 TCACAACAACTGTTACACACGAA 59.005 39.130 0.00 0.00 35.47 3.85
1965 2389 3.586892 TCACAACAACTGTTACACACGA 58.413 40.909 0.00 0.00 35.47 4.35
1966 2390 4.142988 ACTTCACAACAACTGTTACACACG 60.143 41.667 0.00 0.00 35.47 4.49
1984 2566 3.106827 TGGCCATCTGATACTCACTTCA 58.893 45.455 0.00 0.00 0.00 3.02
1988 2570 1.765314 ACCTGGCCATCTGATACTCAC 59.235 52.381 5.51 0.00 0.00 3.51
1993 2575 2.702478 CAAGAGACCTGGCCATCTGATA 59.298 50.000 13.69 0.00 0.00 2.15
2004 2586 0.868406 GTTTCACCGCAAGAGACCTG 59.132 55.000 0.00 0.00 43.02 4.00
2029 2611 6.360370 AAGTCTAGAACTTGAACCTGCATA 57.640 37.500 0.00 0.00 46.61 3.14
2058 2640 5.105752 TGAATTTAAAATATGCCGCCACAC 58.894 37.500 0.00 0.00 0.00 3.82
2061 2643 5.988561 GGAATGAATTTAAAATATGCCGCCA 59.011 36.000 0.00 0.00 0.00 5.69
2062 2644 5.988561 TGGAATGAATTTAAAATATGCCGCC 59.011 36.000 0.00 0.00 0.00 6.13
2063 2645 6.922957 TCTGGAATGAATTTAAAATATGCCGC 59.077 34.615 0.00 0.00 0.00 6.53
2064 2646 9.480053 AATCTGGAATGAATTTAAAATATGCCG 57.520 29.630 0.00 0.00 0.00 5.69
2073 2655 8.508062 TCGTCGAAAAATCTGGAATGAATTTAA 58.492 29.630 0.00 0.00 0.00 1.52
2080 2662 8.765219 ACTAATATCGTCGAAAAATCTGGAATG 58.235 33.333 0.00 0.00 0.00 2.67
2084 2666 8.126871 TGAACTAATATCGTCGAAAAATCTGG 57.873 34.615 0.00 0.00 0.00 3.86
2105 2688 1.469079 GGGCGTGCCATGTAATTGAAC 60.469 52.381 13.76 0.00 37.98 3.18
2112 2695 1.029408 GTTGATGGGCGTGCCATGTA 61.029 55.000 13.76 0.00 37.98 2.29
2113 2696 2.035469 TTGATGGGCGTGCCATGT 59.965 55.556 13.76 0.00 37.98 3.21
2114 2697 2.491152 GTTGATGGGCGTGCCATG 59.509 61.111 13.76 0.00 37.98 3.66
2121 2704 1.671054 ACTTCGTGGTTGATGGGCG 60.671 57.895 0.00 0.00 0.00 6.13
2151 2734 6.806249 GCCAACAGATTTTGATATTGACGAAA 59.194 34.615 0.00 0.00 0.00 3.46
2166 2749 0.034670 GAGCCCTGAGCCAACAGATT 60.035 55.000 0.00 0.00 45.47 2.40
2171 2755 1.676967 CAAGGAGCCCTGAGCCAAC 60.677 63.158 0.00 0.00 45.47 3.77
2173 2757 1.210204 AATCAAGGAGCCCTGAGCCA 61.210 55.000 0.00 0.00 45.47 4.75
2207 2792 6.590234 AGGATTCTAACACCCAAAAATCAC 57.410 37.500 0.00 0.00 0.00 3.06
2292 2881 8.958060 AAGAATCCTATATGAAGCAGTACCTA 57.042 34.615 0.00 0.00 0.00 3.08
2356 2946 5.114764 TGTCATGCCCATCTCAATTCTAA 57.885 39.130 0.00 0.00 0.00 2.10
2408 2998 6.772716 TCTTTGACTTGCAGGATTCTAAAAGT 59.227 34.615 1.40 1.01 33.30 2.66
2426 3016 0.980423 AGACTGAGGGCCTCTTTGAC 59.020 55.000 32.28 21.02 0.00 3.18
2448 3038 2.983136 CGCTATCCTTACGAGCATCTTG 59.017 50.000 0.00 0.00 35.91 3.02
2458 3048 3.179830 CTCACACACACGCTATCCTTAC 58.820 50.000 0.00 0.00 0.00 2.34
2461 3051 0.108615 GCTCACACACACGCTATCCT 60.109 55.000 0.00 0.00 0.00 3.24
2505 3101 9.832445 TGGGAGACAACTGTTATAGATATTTTC 57.168 33.333 0.00 0.00 0.00 2.29
2510 3106 7.272978 GCTTTGGGAGACAACTGTTATAGATA 58.727 38.462 0.00 0.00 39.19 1.98
2512 3108 5.488341 GCTTTGGGAGACAACTGTTATAGA 58.512 41.667 0.00 0.00 39.19 1.98
2543 3139 6.183360 GGGTTTCTAAACTTGGTAACCGAAAA 60.183 38.462 5.62 0.00 38.89 2.29
2621 3222 2.281900 CGGGTGCCGGGAGAAAAA 60.282 61.111 2.18 0.00 44.15 1.94
2631 3232 3.394635 TTCGGGCTATTCGGGTGCC 62.395 63.158 0.00 0.00 45.42 5.01
2632 3233 1.887707 CTTCGGGCTATTCGGGTGC 60.888 63.158 0.00 0.00 0.00 5.01
2633 3234 1.887707 GCTTCGGGCTATTCGGGTG 60.888 63.158 0.00 0.00 38.06 4.61
2636 3237 0.249868 TCATGCTTCGGGCTATTCGG 60.250 55.000 0.00 0.00 42.39 4.30
2637 3238 1.261619 GTTCATGCTTCGGGCTATTCG 59.738 52.381 0.00 0.00 42.39 3.34
2638 3239 2.288666 TGTTCATGCTTCGGGCTATTC 58.711 47.619 0.00 0.00 42.39 1.75
2650 3434 0.166814 GGTCGCTTGTCTGTTCATGC 59.833 55.000 0.00 0.00 35.89 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.