Multiple sequence alignment - TraesCS2B01G205500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G205500 chr2B 100.000 3322 0 0 1 3322 184664437 184661116 0.000000e+00 6135.0
1 TraesCS2B01G205500 chr2B 85.664 858 84 14 1240 2093 183211537 183212359 0.000000e+00 867.0
2 TraesCS2B01G205500 chr2B 94.675 338 18 0 11 348 106212449 106212112 2.940000e-145 525.0
3 TraesCS2B01G205500 chr2B 82.274 299 31 11 2826 3109 183262644 183262935 4.280000e-59 239.0
4 TraesCS2B01G205500 chr2B 95.968 124 5 0 334 457 106206582 106206459 5.620000e-48 202.0
5 TraesCS2B01G205500 chr2B 84.564 149 17 4 76 223 799650775 799650632 3.450000e-30 143.0
6 TraesCS2B01G205500 chr2D 92.634 1344 68 14 773 2104 131164436 131163112 0.000000e+00 1905.0
7 TraesCS2B01G205500 chr2D 86.627 1189 57 37 2203 3322 131163057 131161902 0.000000e+00 1221.0
8 TraesCS2B01G205500 chr2D 84.069 1268 114 42 1240 2478 129837262 129838470 0.000000e+00 1142.0
9 TraesCS2B01G205500 chr2D 91.840 625 49 2 1471 2093 129941568 129942192 0.000000e+00 870.0
10 TraesCS2B01G205500 chr2D 85.606 264 32 5 1 260 92735020 92734759 4.220000e-69 272.0
11 TraesCS2B01G205500 chr2D 83.092 207 19 5 3116 3322 129945445 129945635 1.230000e-39 174.0
12 TraesCS2B01G205500 chr2D 80.928 194 15 7 459 631 131167360 131167168 2.080000e-27 134.0
13 TraesCS2B01G205500 chr2D 76.923 273 35 19 50 301 619266850 619267115 2.690000e-26 130.0
14 TraesCS2B01G205500 chr2A 90.638 1410 89 16 722 2102 137260916 137259521 0.000000e+00 1832.0
15 TraesCS2B01G205500 chr2A 87.539 642 39 20 2679 3319 137256928 137256327 0.000000e+00 704.0
16 TraesCS2B01G205500 chr2A 86.325 234 23 4 2351 2581 137259307 137259080 2.560000e-61 246.0
17 TraesCS2B01G205500 chr2A 90.351 114 9 1 2567 2678 137257405 137257292 7.430000e-32 148.0
18 TraesCS2B01G205500 chr7B 95.536 448 20 0 11 458 579818749 579819196 0.000000e+00 717.0
19 TraesCS2B01G205500 chr6B 94.667 450 23 1 11 460 708510471 708510023 0.000000e+00 697.0
20 TraesCS2B01G205500 chr6B 83.088 136 20 3 2 136 10220475 10220342 1.620000e-23 121.0
21 TraesCS2B01G205500 chr4B 96.359 412 13 2 51 462 453803233 453803642 0.000000e+00 676.0
22 TraesCS2B01G205500 chrUn 87.734 481 39 8 2861 3322 17475511 17475990 8.110000e-151 544.0
23 TraesCS2B01G205500 chrUn 85.185 162 24 0 297 458 61003202 61003363 2.050000e-37 167.0
24 TraesCS2B01G205500 chr5D 85.083 181 25 2 294 474 3762353 3762531 2.040000e-42 183.0
25 TraesCS2B01G205500 chr3B 85.976 164 23 0 296 459 399537254 399537417 3.410000e-40 176.0
26 TraesCS2B01G205500 chr6D 84.706 170 22 1 299 468 440379651 440379486 2.050000e-37 167.0
27 TraesCS2B01G205500 chr4A 84.615 169 21 2 295 458 614135369 614135201 2.650000e-36 163.0
28 TraesCS2B01G205500 chr5A 83.212 137 21 2 2 137 1196077 1196212 1.250000e-24 124.0
29 TraesCS2B01G205500 chr7D 84.091 88 10 2 107 194 399151474 399151557 7.640000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G205500 chr2B 184661116 184664437 3321 True 6135.000000 6135 100.000000 1 3322 1 chr2B.!!$R3 3321
1 TraesCS2B01G205500 chr2B 183211537 183212359 822 False 867.000000 867 85.664000 1240 2093 1 chr2B.!!$F1 853
2 TraesCS2B01G205500 chr2D 129837262 129838470 1208 False 1142.000000 1142 84.069000 1240 2478 1 chr2D.!!$F1 1238
3 TraesCS2B01G205500 chr2D 131161902 131167360 5458 True 1086.666667 1905 86.729667 459 3322 3 chr2D.!!$R2 2863
4 TraesCS2B01G205500 chr2D 129941568 129945635 4067 False 522.000000 870 87.466000 1471 3322 2 chr2D.!!$F3 1851
5 TraesCS2B01G205500 chr2A 137256327 137260916 4589 True 732.500000 1832 88.713250 722 3319 4 chr2A.!!$R1 2597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
285 286 0.111061 TGAAATGGGCTGCACTCACT 59.889 50.0 2.50 0.0 0.0 3.41 F
286 287 0.524862 GAAATGGGCTGCACTCACTG 59.475 55.0 2.50 0.0 0.0 3.66 F
298 299 0.111061 ACTCACTGCAGCCCATCAAA 59.889 50.0 15.27 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2285 4978 0.035915 TGCAGTAATGGGTTAGCGCA 60.036 50.0 11.47 0.00 41.83 6.09 R
2307 5000 1.424493 AATCGCTAGCGCTTGCACTC 61.424 55.0 35.95 13.28 42.66 3.51 R
2335 5028 0.178953 GTGCCCCCTTGGATATGCAT 60.179 55.0 3.79 3.79 35.39 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 7.706281 TTTGCAATTTAAATATATGCCACGG 57.294 32.000 16.81 0.00 36.20 4.94
47 48 5.777802 TGCAATTTAAATATATGCCACGGG 58.222 37.500 16.81 0.00 36.20 5.28
48 49 5.167845 GCAATTTAAATATATGCCACGGGG 58.832 41.667 0.00 0.00 37.18 5.73
49 50 5.279256 GCAATTTAAATATATGCCACGGGGT 60.279 40.000 5.12 0.00 36.17 4.95
50 51 6.071840 GCAATTTAAATATATGCCACGGGGTA 60.072 38.462 5.12 0.00 36.17 3.69
51 52 7.363443 GCAATTTAAATATATGCCACGGGGTAT 60.363 37.037 13.32 13.32 42.66 2.73
52 53 9.179909 CAATTTAAATATATGCCACGGGGTATA 57.820 33.333 17.36 17.36 44.46 1.47
53 54 9.756571 AATTTAAATATATGCCACGGGGTATAA 57.243 29.630 18.94 8.63 43.71 0.98
54 55 9.930158 ATTTAAATATATGCCACGGGGTATAAT 57.070 29.630 18.94 10.45 43.71 1.28
55 56 9.756571 TTTAAATATATGCCACGGGGTATAATT 57.243 29.630 18.94 15.16 43.71 1.40
56 57 9.756571 TTAAATATATGCCACGGGGTATAATTT 57.243 29.630 18.94 22.27 43.71 1.82
57 58 8.658840 AAATATATGCCACGGGGTATAATTTT 57.341 30.769 18.94 16.63 43.71 1.82
58 59 8.658840 AATATATGCCACGGGGTATAATTTTT 57.341 30.769 18.94 4.36 43.71 1.94
59 60 4.664150 ATGCCACGGGGTATAATTTTTG 57.336 40.909 5.06 0.00 37.78 2.44
60 61 3.432378 TGCCACGGGGTATAATTTTTGT 58.568 40.909 5.12 0.00 36.17 2.83
61 62 3.193691 TGCCACGGGGTATAATTTTTGTG 59.806 43.478 5.12 0.00 36.17 3.33
62 63 3.776340 CCACGGGGTATAATTTTTGTGC 58.224 45.455 0.00 0.00 0.00 4.57
63 64 3.193691 CCACGGGGTATAATTTTTGTGCA 59.806 43.478 0.00 0.00 0.00 4.57
64 65 4.142049 CCACGGGGTATAATTTTTGTGCAT 60.142 41.667 0.00 0.00 0.00 3.96
65 66 5.067936 CCACGGGGTATAATTTTTGTGCATA 59.932 40.000 0.00 0.00 0.00 3.14
66 67 6.205784 CACGGGGTATAATTTTTGTGCATAG 58.794 40.000 0.00 0.00 0.00 2.23
67 68 5.889289 ACGGGGTATAATTTTTGTGCATAGT 59.111 36.000 0.00 0.00 0.00 2.12
68 69 7.012515 CACGGGGTATAATTTTTGTGCATAGTA 59.987 37.037 0.00 0.00 0.00 1.82
69 70 7.556996 ACGGGGTATAATTTTTGTGCATAGTAA 59.443 33.333 0.00 0.00 0.00 2.24
70 71 8.407064 CGGGGTATAATTTTTGTGCATAGTAAA 58.593 33.333 0.00 0.00 0.00 2.01
273 274 8.991026 ACAAATTTCATAACATGTGTGAAATGG 58.009 29.630 31.97 28.85 46.28 3.16
274 275 8.444715 CAAATTTCATAACATGTGTGAAATGGG 58.555 33.333 31.97 26.18 46.28 4.00
275 276 4.717233 TCATAACATGTGTGAAATGGGC 57.283 40.909 10.76 0.00 0.00 5.36
276 277 4.343231 TCATAACATGTGTGAAATGGGCT 58.657 39.130 10.76 0.00 0.00 5.19
277 278 4.158209 TCATAACATGTGTGAAATGGGCTG 59.842 41.667 10.76 0.00 0.00 4.85
278 279 0.604578 ACATGTGTGAAATGGGCTGC 59.395 50.000 0.00 0.00 0.00 5.25
279 280 0.604073 CATGTGTGAAATGGGCTGCA 59.396 50.000 0.50 0.00 0.00 4.41
280 281 0.604578 ATGTGTGAAATGGGCTGCAC 59.395 50.000 0.50 0.00 0.00 4.57
281 282 0.467844 TGTGTGAAATGGGCTGCACT 60.468 50.000 2.50 0.00 32.69 4.40
282 283 0.242017 GTGTGAAATGGGCTGCACTC 59.758 55.000 2.50 0.00 32.69 3.51
283 284 0.178995 TGTGAAATGGGCTGCACTCA 60.179 50.000 2.50 0.00 32.69 3.41
284 285 0.242017 GTGAAATGGGCTGCACTCAC 59.758 55.000 2.50 5.17 0.00 3.51
285 286 0.111061 TGAAATGGGCTGCACTCACT 59.889 50.000 2.50 0.00 0.00 3.41
286 287 0.524862 GAAATGGGCTGCACTCACTG 59.475 55.000 2.50 0.00 0.00 3.66
294 295 2.360852 GCACTCACTGCAGCCCAT 60.361 61.111 15.27 0.00 46.29 4.00
295 296 2.404995 GCACTCACTGCAGCCCATC 61.405 63.158 15.27 0.00 46.29 3.51
296 297 1.002990 CACTCACTGCAGCCCATCA 60.003 57.895 15.27 0.00 0.00 3.07
297 298 0.607217 CACTCACTGCAGCCCATCAA 60.607 55.000 15.27 0.00 0.00 2.57
298 299 0.111061 ACTCACTGCAGCCCATCAAA 59.889 50.000 15.27 0.00 0.00 2.69
299 300 1.250328 CTCACTGCAGCCCATCAAAA 58.750 50.000 15.27 0.00 0.00 2.44
300 301 1.822990 CTCACTGCAGCCCATCAAAAT 59.177 47.619 15.27 0.00 0.00 1.82
301 302 3.018856 CTCACTGCAGCCCATCAAAATA 58.981 45.455 15.27 0.00 0.00 1.40
302 303 3.634504 TCACTGCAGCCCATCAAAATAT 58.365 40.909 15.27 0.00 0.00 1.28
303 304 3.382227 TCACTGCAGCCCATCAAAATATG 59.618 43.478 15.27 0.00 0.00 1.78
304 305 2.696707 ACTGCAGCCCATCAAAATATGG 59.303 45.455 15.27 0.00 45.20 2.74
305 306 2.696707 CTGCAGCCCATCAAAATATGGT 59.303 45.455 0.00 0.00 44.29 3.55
306 307 2.431419 TGCAGCCCATCAAAATATGGTG 59.569 45.455 2.43 0.00 44.29 4.17
307 308 2.804212 GCAGCCCATCAAAATATGGTGC 60.804 50.000 2.43 0.00 44.29 5.01
308 309 2.041701 AGCCCATCAAAATATGGTGCC 58.958 47.619 10.69 0.00 44.29 5.01
309 310 1.761784 GCCCATCAAAATATGGTGCCA 59.238 47.619 2.43 0.00 44.29 4.92
310 311 2.483538 GCCCATCAAAATATGGTGCCAC 60.484 50.000 0.00 0.00 44.29 5.01
311 312 2.223782 CCCATCAAAATATGGTGCCACG 60.224 50.000 0.00 0.00 44.29 4.94
312 313 2.426738 CCATCAAAATATGGTGCCACGT 59.573 45.455 0.00 0.00 41.38 4.49
313 314 3.489059 CCATCAAAATATGGTGCCACGTC 60.489 47.826 0.00 0.00 41.38 4.34
314 315 2.784347 TCAAAATATGGTGCCACGTCA 58.216 42.857 0.00 0.00 0.00 4.35
315 316 2.746904 TCAAAATATGGTGCCACGTCAG 59.253 45.455 0.00 0.00 0.00 3.51
316 317 2.487762 CAAAATATGGTGCCACGTCAGT 59.512 45.455 0.00 0.00 0.00 3.41
318 319 0.744414 ATATGGTGCCACGTCAGTGC 60.744 55.000 0.00 0.00 46.62 4.40
319 320 2.105806 TATGGTGCCACGTCAGTGCA 62.106 55.000 0.00 0.00 46.62 4.57
320 321 2.669569 GGTGCCACGTCAGTGCAT 60.670 61.111 0.00 0.00 46.62 3.96
321 322 2.260869 GGTGCCACGTCAGTGCATT 61.261 57.895 0.00 0.00 46.62 3.56
322 323 0.953471 GGTGCCACGTCAGTGCATTA 60.953 55.000 0.00 0.00 46.62 1.90
323 324 1.086696 GTGCCACGTCAGTGCATTAT 58.913 50.000 0.00 0.00 46.62 1.28
324 325 2.276201 GTGCCACGTCAGTGCATTATA 58.724 47.619 0.00 0.00 46.62 0.98
325 326 2.030457 GTGCCACGTCAGTGCATTATAC 59.970 50.000 0.00 0.00 46.62 1.47
326 327 1.257936 GCCACGTCAGTGCATTATACG 59.742 52.381 12.71 12.71 46.62 3.06
327 328 2.804647 CCACGTCAGTGCATTATACGA 58.195 47.619 18.83 0.00 46.62 3.43
328 329 2.534349 CCACGTCAGTGCATTATACGAC 59.466 50.000 18.83 5.54 46.62 4.34
329 330 3.435566 CACGTCAGTGCATTATACGACT 58.564 45.455 18.83 0.11 41.94 4.18
330 331 3.240631 CACGTCAGTGCATTATACGACTG 59.759 47.826 18.83 6.78 41.94 3.51
331 332 3.119602 ACGTCAGTGCATTATACGACTGT 60.120 43.478 18.83 6.30 37.63 3.55
332 333 3.482472 CGTCAGTGCATTATACGACTGTC 59.518 47.826 9.75 0.00 37.63 3.51
333 334 3.482472 GTCAGTGCATTATACGACTGTCG 59.518 47.826 26.94 26.94 46.93 4.35
334 335 3.375922 TCAGTGCATTATACGACTGTCGA 59.624 43.478 33.99 18.78 43.74 4.20
335 336 4.036380 TCAGTGCATTATACGACTGTCGAT 59.964 41.667 33.99 23.35 43.74 3.59
336 337 4.740205 CAGTGCATTATACGACTGTCGATT 59.260 41.667 33.99 22.05 43.74 3.34
337 338 4.740205 AGTGCATTATACGACTGTCGATTG 59.260 41.667 33.99 21.83 43.74 2.67
338 339 4.048504 TGCATTATACGACTGTCGATTGG 58.951 43.478 33.99 18.51 43.74 3.16
339 340 4.202070 TGCATTATACGACTGTCGATTGGA 60.202 41.667 33.99 20.17 43.74 3.53
340 341 4.923871 GCATTATACGACTGTCGATTGGAT 59.076 41.667 33.99 19.60 43.74 3.41
341 342 5.405571 GCATTATACGACTGTCGATTGGATT 59.594 40.000 33.99 14.03 43.74 3.01
342 343 6.584942 GCATTATACGACTGTCGATTGGATTA 59.415 38.462 33.99 15.70 43.74 1.75
343 344 7.201359 GCATTATACGACTGTCGATTGGATTAG 60.201 40.741 33.99 16.03 43.74 1.73
344 345 2.810650 ACGACTGTCGATTGGATTAGC 58.189 47.619 33.99 0.00 43.74 3.09
345 346 2.165641 ACGACTGTCGATTGGATTAGCA 59.834 45.455 33.99 0.00 43.74 3.49
346 347 2.535984 CGACTGTCGATTGGATTAGCAC 59.464 50.000 24.86 0.00 43.74 4.40
347 348 2.866762 GACTGTCGATTGGATTAGCACC 59.133 50.000 0.00 0.00 0.00 5.01
348 349 1.860950 CTGTCGATTGGATTAGCACCG 59.139 52.381 0.00 0.00 0.00 4.94
349 350 1.206132 TGTCGATTGGATTAGCACCGT 59.794 47.619 0.00 0.00 0.00 4.83
350 351 2.427812 TGTCGATTGGATTAGCACCGTA 59.572 45.455 0.00 0.00 0.00 4.02
351 352 3.069016 TGTCGATTGGATTAGCACCGTAT 59.931 43.478 0.00 0.00 0.00 3.06
352 353 4.056050 GTCGATTGGATTAGCACCGTATT 58.944 43.478 0.00 0.00 0.00 1.89
353 354 4.510340 GTCGATTGGATTAGCACCGTATTT 59.490 41.667 0.00 0.00 0.00 1.40
354 355 4.509970 TCGATTGGATTAGCACCGTATTTG 59.490 41.667 0.00 0.00 0.00 2.32
355 356 4.537015 GATTGGATTAGCACCGTATTTGC 58.463 43.478 0.00 0.00 40.52 3.68
356 357 2.992593 TGGATTAGCACCGTATTTGCA 58.007 42.857 0.00 0.00 42.83 4.08
357 358 2.680841 TGGATTAGCACCGTATTTGCAC 59.319 45.455 0.00 0.00 42.83 4.57
358 359 2.680841 GGATTAGCACCGTATTTGCACA 59.319 45.455 0.00 0.00 42.83 4.57
359 360 3.486875 GGATTAGCACCGTATTTGCACAC 60.487 47.826 0.00 0.00 42.83 3.82
360 361 2.171341 TAGCACCGTATTTGCACACA 57.829 45.000 0.00 0.00 42.83 3.72
361 362 0.591170 AGCACCGTATTTGCACACAC 59.409 50.000 0.00 0.00 42.83 3.82
362 363 0.724453 GCACCGTATTTGCACACACG 60.724 55.000 0.00 0.00 39.93 4.49
363 364 0.584396 CACCGTATTTGCACACACGT 59.416 50.000 2.70 0.00 32.66 4.49
364 365 0.584396 ACCGTATTTGCACACACGTG 59.416 50.000 15.48 15.48 46.56 4.49
372 373 4.996113 CACACACGTGCCAAGTTC 57.004 55.556 17.22 0.00 36.06 3.01
373 374 2.393557 CACACACGTGCCAAGTTCT 58.606 52.632 17.22 0.00 36.06 3.01
374 375 1.577468 CACACACGTGCCAAGTTCTA 58.423 50.000 17.22 0.00 36.06 2.10
375 376 1.526887 CACACACGTGCCAAGTTCTAG 59.473 52.381 17.22 0.00 36.06 2.43
376 377 1.411246 ACACACGTGCCAAGTTCTAGA 59.589 47.619 17.22 0.00 0.00 2.43
377 378 2.159014 ACACACGTGCCAAGTTCTAGAA 60.159 45.455 17.22 0.00 0.00 2.10
378 379 2.221055 CACACGTGCCAAGTTCTAGAAC 59.779 50.000 25.24 25.24 41.45 3.01
379 380 1.798813 CACGTGCCAAGTTCTAGAACC 59.201 52.381 28.05 15.42 42.06 3.62
380 381 1.414919 ACGTGCCAAGTTCTAGAACCA 59.585 47.619 28.05 17.60 42.06 3.67
381 382 2.069273 CGTGCCAAGTTCTAGAACCAG 58.931 52.381 28.05 20.87 42.06 4.00
382 383 2.548067 CGTGCCAAGTTCTAGAACCAGT 60.548 50.000 28.05 13.79 42.06 4.00
383 384 3.477530 GTGCCAAGTTCTAGAACCAGTT 58.522 45.455 28.05 15.63 42.06 3.16
384 385 3.498777 GTGCCAAGTTCTAGAACCAGTTC 59.501 47.826 28.05 15.78 42.06 3.01
385 386 2.737252 GCCAAGTTCTAGAACCAGTTCG 59.263 50.000 28.05 12.67 43.97 3.95
386 387 3.554337 GCCAAGTTCTAGAACCAGTTCGA 60.554 47.826 28.05 0.00 43.97 3.71
387 388 3.988517 CCAAGTTCTAGAACCAGTTCGAC 59.011 47.826 28.05 4.76 43.97 4.20
388 389 3.555917 AGTTCTAGAACCAGTTCGACG 57.444 47.619 28.05 0.00 43.97 5.12
389 390 2.883386 AGTTCTAGAACCAGTTCGACGT 59.117 45.455 28.05 6.45 43.97 4.34
390 391 4.067896 AGTTCTAGAACCAGTTCGACGTA 58.932 43.478 28.05 0.00 43.97 3.57
391 392 4.699257 AGTTCTAGAACCAGTTCGACGTAT 59.301 41.667 28.05 5.77 43.97 3.06
392 393 5.182760 AGTTCTAGAACCAGTTCGACGTATT 59.817 40.000 28.05 5.36 43.97 1.89
393 394 5.633830 TCTAGAACCAGTTCGACGTATTT 57.366 39.130 4.94 0.00 43.97 1.40
394 395 6.017400 TCTAGAACCAGTTCGACGTATTTT 57.983 37.500 4.94 0.00 43.97 1.82
395 396 6.449698 TCTAGAACCAGTTCGACGTATTTTT 58.550 36.000 4.94 0.00 43.97 1.94
396 397 5.587033 AGAACCAGTTCGACGTATTTTTC 57.413 39.130 4.94 0.00 43.97 2.29
397 398 5.051816 AGAACCAGTTCGACGTATTTTTCA 58.948 37.500 4.94 0.00 43.97 2.69
398 399 5.524646 AGAACCAGTTCGACGTATTTTTCAA 59.475 36.000 4.94 0.00 43.97 2.69
399 400 5.086888 ACCAGTTCGACGTATTTTTCAAC 57.913 39.130 0.00 0.00 0.00 3.18
400 401 4.812626 ACCAGTTCGACGTATTTTTCAACT 59.187 37.500 0.00 0.00 0.00 3.16
401 402 5.295045 ACCAGTTCGACGTATTTTTCAACTT 59.705 36.000 0.00 0.00 0.00 2.66
402 403 5.844396 CCAGTTCGACGTATTTTTCAACTTC 59.156 40.000 0.00 0.00 0.00 3.01
403 404 6.415702 CAGTTCGACGTATTTTTCAACTTCA 58.584 36.000 0.00 0.00 0.00 3.02
404 405 7.069569 CAGTTCGACGTATTTTTCAACTTCAT 58.930 34.615 0.00 0.00 0.00 2.57
405 406 7.058354 CAGTTCGACGTATTTTTCAACTTCATG 59.942 37.037 0.00 0.00 0.00 3.07
406 407 5.379003 TCGACGTATTTTTCAACTTCATGC 58.621 37.500 0.00 0.00 0.00 4.06
407 408 5.050023 TCGACGTATTTTTCAACTTCATGCA 60.050 36.000 0.00 0.00 0.00 3.96
408 409 5.058008 CGACGTATTTTTCAACTTCATGCAC 59.942 40.000 0.00 0.00 0.00 4.57
409 410 6.072112 ACGTATTTTTCAACTTCATGCACT 57.928 33.333 0.00 0.00 0.00 4.40
410 411 7.197071 ACGTATTTTTCAACTTCATGCACTA 57.803 32.000 0.00 0.00 0.00 2.74
411 412 7.644490 ACGTATTTTTCAACTTCATGCACTAA 58.356 30.769 0.00 0.00 0.00 2.24
412 413 8.132362 ACGTATTTTTCAACTTCATGCACTAAA 58.868 29.630 0.00 0.00 0.00 1.85
413 414 8.629986 CGTATTTTTCAACTTCATGCACTAAAG 58.370 33.333 0.00 0.00 0.00 1.85
414 415 9.463443 GTATTTTTCAACTTCATGCACTAAAGT 57.537 29.630 0.00 0.00 34.81 2.66
428 429 3.561143 ACTAAAGTGAACATTGGTGGCA 58.439 40.909 0.00 0.00 0.00 4.92
429 430 3.957497 ACTAAAGTGAACATTGGTGGCAA 59.043 39.130 0.00 0.00 0.00 4.52
430 431 3.457610 AAAGTGAACATTGGTGGCAAG 57.542 42.857 0.00 0.00 0.00 4.01
431 432 2.071778 AGTGAACATTGGTGGCAAGT 57.928 45.000 0.00 0.00 0.00 3.16
432 433 2.387757 AGTGAACATTGGTGGCAAGTT 58.612 42.857 0.00 0.00 0.00 2.66
433 434 2.765699 AGTGAACATTGGTGGCAAGTTT 59.234 40.909 0.00 0.00 0.00 2.66
434 435 3.957497 AGTGAACATTGGTGGCAAGTTTA 59.043 39.130 0.00 0.00 0.00 2.01
435 436 4.404073 AGTGAACATTGGTGGCAAGTTTAA 59.596 37.500 0.00 0.00 0.00 1.52
436 437 5.105146 AGTGAACATTGGTGGCAAGTTTAAA 60.105 36.000 0.00 0.00 0.00 1.52
437 438 5.006261 GTGAACATTGGTGGCAAGTTTAAAC 59.994 40.000 10.47 10.47 0.00 2.01
438 439 4.744795 ACATTGGTGGCAAGTTTAAACA 57.255 36.364 20.06 0.00 0.00 2.83
439 440 4.438148 ACATTGGTGGCAAGTTTAAACAC 58.562 39.130 20.06 8.93 0.00 3.32
443 444 3.793797 GTGGCAAGTTTAAACACCACT 57.206 42.857 30.98 9.96 41.97 4.00
444 445 3.443976 GTGGCAAGTTTAAACACCACTG 58.556 45.455 30.98 18.15 41.97 3.66
445 446 2.428890 TGGCAAGTTTAAACACCACTGG 59.571 45.455 20.06 0.00 0.00 4.00
446 447 2.429250 GGCAAGTTTAAACACCACTGGT 59.571 45.455 20.06 0.00 35.62 4.00
462 463 7.504926 ACCACTGGTGATATTACCTCTTTTA 57.495 36.000 16.91 0.00 41.43 1.52
531 532 6.686253 CGCGCATGGCAAATTTATTTTATTTT 59.314 30.769 8.75 0.00 43.84 1.82
579 601 8.326680 CATTGTTTATGGGATTTTCTTTTGCT 57.673 30.769 0.00 0.00 0.00 3.91
632 654 8.761575 AAAAACATGGCAATTACTACTCAATG 57.238 30.769 0.00 0.00 0.00 2.82
633 655 7.701539 AAACATGGCAATTACTACTCAATGA 57.298 32.000 0.00 0.00 0.00 2.57
634 656 7.886629 AACATGGCAATTACTACTCAATGAT 57.113 32.000 0.00 0.00 0.00 2.45
635 657 7.268199 ACATGGCAATTACTACTCAATGATG 57.732 36.000 0.00 0.00 0.00 3.07
636 658 6.830324 ACATGGCAATTACTACTCAATGATGT 59.170 34.615 0.00 0.00 0.00 3.06
637 659 7.992608 ACATGGCAATTACTACTCAATGATGTA 59.007 33.333 0.00 0.00 0.00 2.29
638 660 7.786178 TGGCAATTACTACTCAATGATGTAC 57.214 36.000 0.00 0.00 0.00 2.90
639 661 7.334858 TGGCAATTACTACTCAATGATGTACA 58.665 34.615 0.00 0.00 0.00 2.90
640 662 7.826744 TGGCAATTACTACTCAATGATGTACAA 59.173 33.333 0.00 0.00 0.00 2.41
641 663 8.122952 GGCAATTACTACTCAATGATGTACAAC 58.877 37.037 0.00 0.00 0.00 3.32
642 664 8.664798 GCAATTACTACTCAATGATGTACAACA 58.335 33.333 8.38 8.38 0.00 3.33
645 667 9.719355 ATTACTACTCAATGATGTACAACAACA 57.281 29.630 10.08 4.16 35.37 3.33
646 668 9.549078 TTACTACTCAATGATGTACAACAACAA 57.451 29.630 10.08 0.00 34.57 2.83
647 669 8.621532 ACTACTCAATGATGTACAACAACAAT 57.378 30.769 10.08 0.00 34.57 2.71
648 670 8.721478 ACTACTCAATGATGTACAACAACAATC 58.279 33.333 10.08 0.00 34.57 2.67
649 671 7.750229 ACTCAATGATGTACAACAACAATCT 57.250 32.000 10.08 0.00 34.57 2.40
650 672 7.810658 ACTCAATGATGTACAACAACAATCTC 58.189 34.615 10.08 0.00 34.57 2.75
651 673 7.094634 ACTCAATGATGTACAACAACAATCTCC 60.095 37.037 10.08 0.00 34.57 3.71
652 674 6.150976 TCAATGATGTACAACAACAATCTCCC 59.849 38.462 10.08 0.00 34.57 4.30
653 675 4.000325 TGATGTACAACAACAATCTCCCG 59.000 43.478 2.94 0.00 27.59 5.14
654 676 2.147958 TGTACAACAACAATCTCCCGC 58.852 47.619 0.00 0.00 0.00 6.13
655 677 2.147958 GTACAACAACAATCTCCCGCA 58.852 47.619 0.00 0.00 0.00 5.69
656 678 1.686355 ACAACAACAATCTCCCGCAA 58.314 45.000 0.00 0.00 0.00 4.85
657 679 2.028130 ACAACAACAATCTCCCGCAAA 58.972 42.857 0.00 0.00 0.00 3.68
658 680 2.428890 ACAACAACAATCTCCCGCAAAA 59.571 40.909 0.00 0.00 0.00 2.44
659 681 3.118956 ACAACAACAATCTCCCGCAAAAA 60.119 39.130 0.00 0.00 0.00 1.94
693 715 5.184711 ACAACAACAGATGGCAAATTTTGT 58.815 33.333 10.65 0.00 0.00 2.83
697 719 7.155655 ACAACAGATGGCAAATTTTGTTTTT 57.844 28.000 10.65 0.00 0.00 1.94
718 740 6.595772 TTTTTGTTTTGCCACATGATGTAC 57.404 33.333 0.00 0.00 0.00 2.90
719 741 4.926140 TTGTTTTGCCACATGATGTACA 57.074 36.364 0.00 0.00 0.00 2.90
720 742 4.502171 TGTTTTGCCACATGATGTACAG 57.498 40.909 0.00 0.00 0.00 2.74
728 1384 4.568359 GCCACATGATGTACAGAACTAGTG 59.432 45.833 0.00 5.48 0.00 2.74
753 1409 2.855180 CAGAACGTGCATTGGATCAAC 58.145 47.619 0.00 0.00 0.00 3.18
754 1414 1.464608 AGAACGTGCATTGGATCAACG 59.535 47.619 0.00 0.00 0.00 4.10
810 3469 3.446161 ACATGGAGACGGTCGATCTTTTA 59.554 43.478 1.89 0.00 0.00 1.52
819 3478 3.119245 CGGTCGATCTTTTACCTCCTTGA 60.119 47.826 0.00 0.00 0.00 3.02
823 3482 5.292101 GTCGATCTTTTACCTCCTTGACATG 59.708 44.000 0.00 0.00 0.00 3.21
824 3483 4.572389 CGATCTTTTACCTCCTTGACATGG 59.428 45.833 0.00 0.80 0.00 3.66
825 3484 3.686016 TCTTTTACCTCCTTGACATGGC 58.314 45.455 0.00 0.00 0.00 4.40
826 3485 3.073798 TCTTTTACCTCCTTGACATGGCA 59.926 43.478 0.00 0.00 0.00 4.92
827 3486 2.489938 TTACCTCCTTGACATGGCAC 57.510 50.000 0.00 0.00 0.00 5.01
828 3487 0.618458 TACCTCCTTGACATGGCACC 59.382 55.000 0.00 0.00 0.00 5.01
939 3602 3.243907 GCGGATATAGCTGAACCTGAACT 60.244 47.826 0.00 0.00 0.00 3.01
1108 3771 3.644399 GAGAACCGGAGCGTGGTCC 62.644 68.421 9.46 8.03 39.29 4.46
1134 3797 2.898343 AACAACGTCACCGCCACC 60.898 61.111 0.00 0.00 37.70 4.61
1213 3876 1.598962 AAGACGGTCCTCGACGTGA 60.599 57.895 4.14 0.00 44.24 4.35
1241 3904 1.001641 CCTTGTGCCCTTCTCCTGG 60.002 63.158 0.00 0.00 0.00 4.45
1338 4001 5.286558 CGTGTTCGTTGTGTGGTAAATTTTT 59.713 36.000 0.00 0.00 0.00 1.94
1339 4002 6.468319 CGTGTTCGTTGTGTGGTAAATTTTTA 59.532 34.615 0.00 0.00 0.00 1.52
1340 4003 7.304962 CGTGTTCGTTGTGTGGTAAATTTTTAG 60.305 37.037 0.00 0.00 0.00 1.85
1341 4004 7.485595 GTGTTCGTTGTGTGGTAAATTTTTAGT 59.514 33.333 0.00 0.00 0.00 2.24
1342 4005 8.027771 TGTTCGTTGTGTGGTAAATTTTTAGTT 58.972 29.630 0.00 0.00 0.00 2.24
1343 4006 8.525876 GTTCGTTGTGTGGTAAATTTTTAGTTC 58.474 33.333 0.00 0.00 0.00 3.01
1348 4011 9.719279 TTGTGTGGTAAATTTTTAGTTCTTACG 57.281 29.630 0.00 0.00 0.00 3.18
1378 4049 3.489785 GCTTGATTCATTCGTACTACGGG 59.510 47.826 8.71 0.07 42.81 5.28
1380 4051 2.223876 TGATTCATTCGTACTACGGGGC 60.224 50.000 8.71 0.00 42.81 5.80
1381 4052 1.477553 TTCATTCGTACTACGGGGCT 58.522 50.000 8.71 0.00 42.81 5.19
1386 4057 2.114670 CGTACTACGGGGCTCGGAA 61.115 63.158 13.20 0.00 44.45 4.30
1613 4295 4.704833 GGCCACGCCTTCTGCTCA 62.705 66.667 0.00 0.00 46.69 4.26
1745 4427 0.551396 TCATCTCCTCGGACCTGCTA 59.449 55.000 0.00 0.00 0.00 3.49
2104 4786 5.781210 TGCAGGTACAGATCAGATTAGAG 57.219 43.478 0.00 0.00 0.00 2.43
2106 4793 5.893824 TGCAGGTACAGATCAGATTAGAGAA 59.106 40.000 0.00 0.00 0.00 2.87
2111 4798 8.719596 AGGTACAGATCAGATTAGAGAACTCTA 58.280 37.037 7.37 7.37 40.93 2.43
2112 4799 9.515226 GGTACAGATCAGATTAGAGAACTCTAT 57.485 37.037 11.57 3.76 41.37 1.98
2143 4830 4.917474 GCAAATCGCCCATTGCTT 57.083 50.000 7.52 0.00 46.42 3.91
2144 4831 2.375981 GCAAATCGCCCATTGCTTG 58.624 52.632 7.52 0.00 46.42 4.01
2195 4885 7.834881 ACTATCCGATTATCAAGTTAGTCCA 57.165 36.000 0.00 0.00 0.00 4.02
2196 4886 8.423906 ACTATCCGATTATCAAGTTAGTCCAT 57.576 34.615 0.00 0.00 0.00 3.41
2249 4942 7.602265 CCTTGTTTGATTTATTTTAGGTGTGGG 59.398 37.037 0.00 0.00 0.00 4.61
2285 4978 1.676916 CGATGTGCATCCAAGGTGTCT 60.677 52.381 6.60 0.00 34.40 3.41
2306 4999 1.470890 GCGCTAACCCATTACTGCAAA 59.529 47.619 0.00 0.00 0.00 3.68
2307 5000 2.477863 GCGCTAACCCATTACTGCAAAG 60.478 50.000 0.00 0.00 0.00 2.77
2344 5037 4.618489 GCGATTTGCTTGTTATGCATATCC 59.382 41.667 7.36 2.16 42.04 2.59
2348 5041 5.518848 TTGCTTGTTATGCATATCCAAGG 57.481 39.130 29.31 19.29 40.34 3.61
2349 5042 3.890756 TGCTTGTTATGCATATCCAAGGG 59.109 43.478 29.31 17.32 35.31 3.95
2369 5090 2.012673 GGGCACAAATACTGAGCTCTG 58.987 52.381 18.15 18.15 38.93 3.35
2382 5104 6.360370 ACTGAGCTCTGTTTATTAACCAGA 57.640 37.500 19.51 3.95 33.15 3.86
2384 5106 6.820656 ACTGAGCTCTGTTTATTAACCAGATG 59.179 38.462 19.51 1.67 33.15 2.90
2423 5150 7.965107 GCTTCATCTTTGTCGTTTATCTCAATT 59.035 33.333 0.00 0.00 0.00 2.32
2472 5206 4.833390 ACTTTACTTGATCAGGCTGTACC 58.167 43.478 15.27 5.56 39.61 3.34
2493 5227 4.643784 ACCGAACTACGAACATTATCTCCT 59.356 41.667 0.00 0.00 45.77 3.69
2494 5228 5.126707 ACCGAACTACGAACATTATCTCCTT 59.873 40.000 0.00 0.00 45.77 3.36
2495 5229 5.459107 CCGAACTACGAACATTATCTCCTTG 59.541 44.000 0.00 0.00 45.77 3.61
2496 5230 6.263344 CGAACTACGAACATTATCTCCTTGA 58.737 40.000 0.00 0.00 45.77 3.02
2497 5231 6.918569 CGAACTACGAACATTATCTCCTTGAT 59.081 38.462 0.00 0.00 45.77 2.57
2516 5251 4.825422 TGATTGACTCGATTCAGCTTTCT 58.175 39.130 5.56 0.00 0.00 2.52
2539 5274 6.934083 TCTGTTGTGCTTGTAAATATGTGAGA 59.066 34.615 0.00 0.00 0.00 3.27
2664 7913 3.255642 ACATCAAAGTTGGCATGGTGTAC 59.744 43.478 2.99 0.00 36.68 2.90
2714 8327 4.270245 TGTCATGTGTGAGACTTGCATA 57.730 40.909 0.00 0.00 34.36 3.14
2715 8328 4.835678 TGTCATGTGTGAGACTTGCATAT 58.164 39.130 0.00 0.00 34.36 1.78
2716 8329 5.247862 TGTCATGTGTGAGACTTGCATATT 58.752 37.500 0.00 0.00 34.36 1.28
2717 8330 6.405538 TGTCATGTGTGAGACTTGCATATTA 58.594 36.000 0.00 0.00 34.36 0.98
2866 8483 0.780002 GCACACCACAACGTACGTAG 59.220 55.000 23.12 14.28 0.00 3.51
2871 8516 3.243501 ACACCACAACGTACGTAGACAAT 60.244 43.478 23.12 0.97 0.00 2.71
2910 8555 2.159226 ACTGTCTCCGGAAATGATCGAC 60.159 50.000 5.23 8.25 0.00 4.20
2957 8606 0.881600 TTGATCATGGCTCATCGGCG 60.882 55.000 0.00 0.00 42.02 6.46
3111 8769 0.454600 GTAATCGTCCTCAGGCGACA 59.545 55.000 11.74 1.91 40.03 4.35
3285 8946 3.330766 CGATCGGTCGCTTTCTTCT 57.669 52.632 4.56 0.00 41.49 2.85
3286 8947 1.630148 CGATCGGTCGCTTTCTTCTT 58.370 50.000 4.56 0.00 41.49 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 8.607459 CCGTGGCATATATTTAAATTGCAAAAA 58.393 29.630 19.74 0.00 35.04 1.94
21 22 7.225538 CCCGTGGCATATATTTAAATTGCAAAA 59.774 33.333 19.74 0.00 35.04 2.44
22 23 6.703607 CCCGTGGCATATATTTAAATTGCAAA 59.296 34.615 19.74 8.83 35.04 3.68
23 24 6.219473 CCCGTGGCATATATTTAAATTGCAA 58.781 36.000 19.74 0.00 35.04 4.08
24 25 5.279206 CCCCGTGGCATATATTTAAATTGCA 60.279 40.000 19.74 7.92 35.04 4.08
25 26 5.167845 CCCCGTGGCATATATTTAAATTGC 58.832 41.667 12.84 12.84 0.00 3.56
26 27 6.339587 ACCCCGTGGCATATATTTAAATTG 57.660 37.500 5.91 0.00 33.59 2.32
27 28 9.756571 TTATACCCCGTGGCATATATTTAAATT 57.243 29.630 5.91 0.00 33.59 1.82
28 29 9.930158 ATTATACCCCGTGGCATATATTTAAAT 57.070 29.630 5.89 5.89 33.59 1.40
29 30 9.756571 AATTATACCCCGTGGCATATATTTAAA 57.243 29.630 0.00 0.00 33.59 1.52
30 31 9.756571 AAATTATACCCCGTGGCATATATTTAA 57.243 29.630 0.00 0.00 33.59 1.52
31 32 9.756571 AAAATTATACCCCGTGGCATATATTTA 57.243 29.630 0.00 0.00 33.59 1.40
32 33 8.658840 AAAATTATACCCCGTGGCATATATTT 57.341 30.769 0.00 0.00 33.59 1.40
33 34 8.527810 CAAAAATTATACCCCGTGGCATATATT 58.472 33.333 0.00 0.00 33.59 1.28
34 35 7.672239 ACAAAAATTATACCCCGTGGCATATAT 59.328 33.333 0.00 0.00 33.59 0.86
35 36 7.005296 ACAAAAATTATACCCCGTGGCATATA 58.995 34.615 0.00 0.00 33.59 0.86
36 37 5.836358 ACAAAAATTATACCCCGTGGCATAT 59.164 36.000 0.00 0.00 33.59 1.78
37 38 5.067936 CACAAAAATTATACCCCGTGGCATA 59.932 40.000 0.00 0.00 33.59 3.14
38 39 4.027437 ACAAAAATTATACCCCGTGGCAT 58.973 39.130 0.00 0.00 33.59 4.40
39 40 3.193691 CACAAAAATTATACCCCGTGGCA 59.806 43.478 0.00 0.00 33.59 4.92
40 41 3.776340 CACAAAAATTATACCCCGTGGC 58.224 45.455 0.00 0.00 33.59 5.01
41 42 3.193691 TGCACAAAAATTATACCCCGTGG 59.806 43.478 0.00 0.00 37.80 4.94
42 43 4.442375 TGCACAAAAATTATACCCCGTG 57.558 40.909 0.00 0.00 0.00 4.94
43 44 5.889289 ACTATGCACAAAAATTATACCCCGT 59.111 36.000 0.00 0.00 0.00 5.28
44 45 6.385649 ACTATGCACAAAAATTATACCCCG 57.614 37.500 0.00 0.00 0.00 5.73
247 248 8.991026 CCATTTCACACATGTTATGAAATTTGT 58.009 29.630 29.08 16.64 46.07 2.83
248 249 8.444715 CCCATTTCACACATGTTATGAAATTTG 58.555 33.333 29.08 23.66 46.07 2.32
249 250 7.119553 GCCCATTTCACACATGTTATGAAATTT 59.880 33.333 29.08 17.37 46.07 1.82
250 251 6.594937 GCCCATTTCACACATGTTATGAAATT 59.405 34.615 29.08 18.90 46.07 1.82
252 253 5.245751 AGCCCATTTCACACATGTTATGAAA 59.754 36.000 26.05 26.05 44.18 2.69
253 254 4.771577 AGCCCATTTCACACATGTTATGAA 59.228 37.500 15.32 15.32 0.00 2.57
254 255 4.158209 CAGCCCATTTCACACATGTTATGA 59.842 41.667 0.00 0.00 0.00 2.15
255 256 4.426416 CAGCCCATTTCACACATGTTATG 58.574 43.478 0.00 0.00 0.00 1.90
256 257 3.119029 GCAGCCCATTTCACACATGTTAT 60.119 43.478 0.00 0.00 0.00 1.89
257 258 2.230992 GCAGCCCATTTCACACATGTTA 59.769 45.455 0.00 0.00 0.00 2.41
258 259 1.001181 GCAGCCCATTTCACACATGTT 59.999 47.619 0.00 0.00 0.00 2.71
259 260 0.604578 GCAGCCCATTTCACACATGT 59.395 50.000 0.00 0.00 0.00 3.21
260 261 0.604073 TGCAGCCCATTTCACACATG 59.396 50.000 0.00 0.00 0.00 3.21
261 262 0.604578 GTGCAGCCCATTTCACACAT 59.395 50.000 0.00 0.00 0.00 3.21
262 263 0.467844 AGTGCAGCCCATTTCACACA 60.468 50.000 0.00 0.00 32.25 3.72
263 264 0.242017 GAGTGCAGCCCATTTCACAC 59.758 55.000 0.00 0.00 32.25 3.82
264 265 0.178995 TGAGTGCAGCCCATTTCACA 60.179 50.000 0.00 0.00 32.25 3.58
265 266 0.242017 GTGAGTGCAGCCCATTTCAC 59.758 55.000 0.00 6.74 35.34 3.18
266 267 0.111061 AGTGAGTGCAGCCCATTTCA 59.889 50.000 0.00 0.00 0.00 2.69
267 268 0.524862 CAGTGAGTGCAGCCCATTTC 59.475 55.000 0.00 0.00 0.00 2.17
268 269 2.649831 CAGTGAGTGCAGCCCATTT 58.350 52.632 0.00 0.00 0.00 2.32
269 270 4.410225 CAGTGAGTGCAGCCCATT 57.590 55.556 0.00 0.00 0.00 3.16
278 279 0.607217 TTGATGGGCTGCAGTGAGTG 60.607 55.000 16.64 0.00 0.00 3.51
279 280 0.111061 TTTGATGGGCTGCAGTGAGT 59.889 50.000 16.64 0.00 0.00 3.41
280 281 1.250328 TTTTGATGGGCTGCAGTGAG 58.750 50.000 16.64 0.00 0.00 3.51
281 282 1.927487 ATTTTGATGGGCTGCAGTGA 58.073 45.000 16.64 0.00 0.00 3.41
282 283 3.491964 CCATATTTTGATGGGCTGCAGTG 60.492 47.826 16.64 0.15 42.46 3.66
283 284 2.696707 CCATATTTTGATGGGCTGCAGT 59.303 45.455 16.64 0.00 42.46 4.40
284 285 3.380479 CCATATTTTGATGGGCTGCAG 57.620 47.619 10.11 10.11 42.46 4.41
292 293 3.128415 TGACGTGGCACCATATTTTGATG 59.872 43.478 12.86 0.00 0.00 3.07
293 294 3.351740 TGACGTGGCACCATATTTTGAT 58.648 40.909 12.86 0.00 0.00 2.57
294 295 2.746904 CTGACGTGGCACCATATTTTGA 59.253 45.455 12.86 0.00 0.00 2.69
295 296 2.487762 ACTGACGTGGCACCATATTTTG 59.512 45.455 12.86 0.00 0.00 2.44
296 297 2.487762 CACTGACGTGGCACCATATTTT 59.512 45.455 12.86 0.00 37.50 1.82
297 298 2.083774 CACTGACGTGGCACCATATTT 58.916 47.619 12.86 0.00 37.50 1.40
298 299 1.737838 CACTGACGTGGCACCATATT 58.262 50.000 12.86 0.00 37.50 1.28
299 300 0.744414 GCACTGACGTGGCACCATAT 60.744 55.000 12.86 0.00 41.51 1.78
300 301 1.375396 GCACTGACGTGGCACCATA 60.375 57.895 12.86 0.00 41.51 2.74
301 302 2.669569 GCACTGACGTGGCACCAT 60.670 61.111 12.86 0.00 41.51 3.55
302 303 2.956799 AATGCACTGACGTGGCACCA 62.957 55.000 12.86 4.12 41.51 4.17
303 304 0.953471 TAATGCACTGACGTGGCACC 60.953 55.000 12.86 0.00 41.51 5.01
304 305 1.086696 ATAATGCACTGACGTGGCAC 58.913 50.000 7.79 7.79 41.51 5.01
305 306 2.276201 GTATAATGCACTGACGTGGCA 58.724 47.619 0.00 0.00 41.51 4.92
306 307 1.257936 CGTATAATGCACTGACGTGGC 59.742 52.381 0.00 0.00 41.51 5.01
307 308 2.534349 GTCGTATAATGCACTGACGTGG 59.466 50.000 0.00 0.00 41.51 4.94
308 309 3.240631 CAGTCGTATAATGCACTGACGTG 59.759 47.826 0.00 0.00 44.07 4.49
309 310 3.119602 ACAGTCGTATAATGCACTGACGT 60.120 43.478 4.97 0.00 38.90 4.34
310 311 3.435566 ACAGTCGTATAATGCACTGACG 58.564 45.455 4.97 5.06 38.90 4.35
311 312 3.482472 CGACAGTCGTATAATGCACTGAC 59.518 47.826 15.21 0.00 38.90 3.51
312 313 3.375922 TCGACAGTCGTATAATGCACTGA 59.624 43.478 22.16 0.00 41.35 3.41
313 314 3.691498 TCGACAGTCGTATAATGCACTG 58.309 45.455 22.16 0.00 41.35 3.66
314 315 4.569761 ATCGACAGTCGTATAATGCACT 57.430 40.909 22.16 0.00 41.35 4.40
315 316 4.085055 CCAATCGACAGTCGTATAATGCAC 60.085 45.833 22.16 0.00 41.35 4.57
316 317 4.048504 CCAATCGACAGTCGTATAATGCA 58.951 43.478 22.16 0.86 41.35 3.96
317 318 4.295870 TCCAATCGACAGTCGTATAATGC 58.704 43.478 22.16 0.00 41.35 3.56
318 319 7.201359 GCTAATCCAATCGACAGTCGTATAATG 60.201 40.741 22.16 13.89 41.35 1.90
319 320 6.807230 GCTAATCCAATCGACAGTCGTATAAT 59.193 38.462 22.16 5.96 41.35 1.28
320 321 6.147581 GCTAATCCAATCGACAGTCGTATAA 58.852 40.000 22.16 3.58 41.35 0.98
321 322 5.239963 TGCTAATCCAATCGACAGTCGTATA 59.760 40.000 22.16 3.97 41.35 1.47
322 323 4.037565 TGCTAATCCAATCGACAGTCGTAT 59.962 41.667 22.16 11.68 41.35 3.06
323 324 3.379057 TGCTAATCCAATCGACAGTCGTA 59.621 43.478 22.16 9.89 41.35 3.43
324 325 2.165641 TGCTAATCCAATCGACAGTCGT 59.834 45.455 22.16 7.48 41.35 4.34
325 326 2.535984 GTGCTAATCCAATCGACAGTCG 59.464 50.000 17.33 17.33 42.10 4.18
326 327 2.866762 GGTGCTAATCCAATCGACAGTC 59.133 50.000 0.00 0.00 0.00 3.51
327 328 2.738643 CGGTGCTAATCCAATCGACAGT 60.739 50.000 0.00 0.00 0.00 3.55
328 329 1.860950 CGGTGCTAATCCAATCGACAG 59.139 52.381 0.00 0.00 0.00 3.51
329 330 1.206132 ACGGTGCTAATCCAATCGACA 59.794 47.619 0.00 0.00 0.00 4.35
330 331 1.935933 ACGGTGCTAATCCAATCGAC 58.064 50.000 0.00 0.00 0.00 4.20
331 332 4.330944 AATACGGTGCTAATCCAATCGA 57.669 40.909 0.00 0.00 0.00 3.59
332 333 4.772434 CAAATACGGTGCTAATCCAATCG 58.228 43.478 0.00 0.00 0.00 3.34
333 334 4.036262 TGCAAATACGGTGCTAATCCAATC 59.964 41.667 0.00 0.00 42.69 2.67
334 335 3.951037 TGCAAATACGGTGCTAATCCAAT 59.049 39.130 0.00 0.00 42.69 3.16
335 336 3.127895 GTGCAAATACGGTGCTAATCCAA 59.872 43.478 0.00 0.00 42.69 3.53
336 337 2.680841 GTGCAAATACGGTGCTAATCCA 59.319 45.455 0.00 0.00 42.69 3.41
337 338 2.680841 TGTGCAAATACGGTGCTAATCC 59.319 45.455 0.00 0.00 42.69 3.01
338 339 3.126171 TGTGTGCAAATACGGTGCTAATC 59.874 43.478 0.00 0.00 42.69 1.75
339 340 3.078097 TGTGTGCAAATACGGTGCTAAT 58.922 40.909 0.00 0.00 42.69 1.73
340 341 2.224549 GTGTGTGCAAATACGGTGCTAA 59.775 45.455 0.00 0.00 42.69 3.09
341 342 1.801771 GTGTGTGCAAATACGGTGCTA 59.198 47.619 0.00 0.00 42.69 3.49
342 343 0.591170 GTGTGTGCAAATACGGTGCT 59.409 50.000 0.00 0.00 42.69 4.40
343 344 0.724453 CGTGTGTGCAAATACGGTGC 60.724 55.000 17.60 0.00 42.55 5.01
344 345 0.584396 ACGTGTGTGCAAATACGGTG 59.416 50.000 26.94 3.61 40.56 4.94
345 346 0.584396 CACGTGTGTGCAAATACGGT 59.416 50.000 26.94 12.12 39.67 4.83
346 347 3.359798 CACGTGTGTGCAAATACGG 57.640 52.632 26.94 14.00 39.67 4.02
355 356 6.300369 GTTCTAGAACTTGGCACGTGTGTG 62.300 50.000 25.30 7.82 42.19 3.82
356 357 1.411246 TCTAGAACTTGGCACGTGTGT 59.589 47.619 18.38 8.46 0.00 3.72
357 358 2.148916 TCTAGAACTTGGCACGTGTG 57.851 50.000 18.38 7.83 0.00 3.82
358 359 2.480845 GTTCTAGAACTTGGCACGTGT 58.519 47.619 25.30 0.00 38.25 4.49
359 360 1.798813 GGTTCTAGAACTTGGCACGTG 59.201 52.381 29.66 12.28 40.94 4.49
360 361 1.414919 TGGTTCTAGAACTTGGCACGT 59.585 47.619 29.66 0.00 40.94 4.49
361 362 2.069273 CTGGTTCTAGAACTTGGCACG 58.931 52.381 29.66 12.52 40.94 5.34
362 363 3.127425 ACTGGTTCTAGAACTTGGCAC 57.873 47.619 29.66 15.65 40.94 5.01
363 364 3.740115 GAACTGGTTCTAGAACTTGGCA 58.260 45.455 29.66 19.69 40.94 4.92
364 365 2.737252 CGAACTGGTTCTAGAACTTGGC 59.263 50.000 29.66 16.60 40.94 4.52
365 366 3.988517 GTCGAACTGGTTCTAGAACTTGG 59.011 47.826 29.66 21.84 40.94 3.61
366 367 3.669122 CGTCGAACTGGTTCTAGAACTTG 59.331 47.826 29.66 23.91 40.94 3.16
367 368 3.317430 ACGTCGAACTGGTTCTAGAACTT 59.683 43.478 29.66 19.00 40.94 2.66
368 369 2.883386 ACGTCGAACTGGTTCTAGAACT 59.117 45.455 29.66 14.12 40.94 3.01
369 370 3.279853 ACGTCGAACTGGTTCTAGAAC 57.720 47.619 24.73 24.73 40.45 3.01
370 371 5.633830 AATACGTCGAACTGGTTCTAGAA 57.366 39.130 0.00 0.00 37.44 2.10
371 372 5.633830 AAATACGTCGAACTGGTTCTAGA 57.366 39.130 0.00 0.00 37.44 2.43
372 373 6.364165 TGAAAAATACGTCGAACTGGTTCTAG 59.636 38.462 0.00 5.42 37.44 2.43
373 374 6.215121 TGAAAAATACGTCGAACTGGTTCTA 58.785 36.000 0.00 0.00 37.44 2.10
374 375 5.051816 TGAAAAATACGTCGAACTGGTTCT 58.948 37.500 0.00 0.00 37.44 3.01
375 376 5.333046 TGAAAAATACGTCGAACTGGTTC 57.667 39.130 0.00 3.62 36.29 3.62
376 377 5.295045 AGTTGAAAAATACGTCGAACTGGTT 59.705 36.000 0.00 0.00 0.00 3.67
377 378 4.812626 AGTTGAAAAATACGTCGAACTGGT 59.187 37.500 0.00 0.00 0.00 4.00
378 379 5.338614 AGTTGAAAAATACGTCGAACTGG 57.661 39.130 0.00 0.00 0.00 4.00
379 380 6.415702 TGAAGTTGAAAAATACGTCGAACTG 58.584 36.000 0.00 0.00 0.00 3.16
380 381 6.592798 TGAAGTTGAAAAATACGTCGAACT 57.407 33.333 0.00 0.00 0.00 3.01
381 382 6.183359 GCATGAAGTTGAAAAATACGTCGAAC 60.183 38.462 0.00 0.00 0.00 3.95
382 383 5.849081 GCATGAAGTTGAAAAATACGTCGAA 59.151 36.000 0.00 0.00 0.00 3.71
383 384 5.050023 TGCATGAAGTTGAAAAATACGTCGA 60.050 36.000 0.00 0.00 0.00 4.20
384 385 5.058008 GTGCATGAAGTTGAAAAATACGTCG 59.942 40.000 0.00 0.00 0.00 5.12
385 386 6.142817 AGTGCATGAAGTTGAAAAATACGTC 58.857 36.000 0.00 0.00 0.00 4.34
386 387 6.072112 AGTGCATGAAGTTGAAAAATACGT 57.928 33.333 0.00 0.00 0.00 3.57
387 388 8.500837 TTTAGTGCATGAAGTTGAAAAATACG 57.499 30.769 0.00 0.00 0.00 3.06
388 389 9.463443 ACTTTAGTGCATGAAGTTGAAAAATAC 57.537 29.630 0.00 0.00 34.22 1.89
389 390 9.462174 CACTTTAGTGCATGAAGTTGAAAAATA 57.538 29.630 0.00 0.00 35.66 1.40
390 391 8.196771 TCACTTTAGTGCATGAAGTTGAAAAAT 58.803 29.630 5.00 0.00 45.25 1.82
391 392 7.542890 TCACTTTAGTGCATGAAGTTGAAAAA 58.457 30.769 5.00 0.00 45.25 1.94
392 393 7.094508 TCACTTTAGTGCATGAAGTTGAAAA 57.905 32.000 5.00 0.00 45.25 2.29
393 394 6.691754 TCACTTTAGTGCATGAAGTTGAAA 57.308 33.333 5.00 0.00 45.25 2.69
394 395 6.094742 TGTTCACTTTAGTGCATGAAGTTGAA 59.905 34.615 5.00 11.80 45.25 2.69
395 396 5.588246 TGTTCACTTTAGTGCATGAAGTTGA 59.412 36.000 5.00 7.98 45.25 3.18
396 397 5.820131 TGTTCACTTTAGTGCATGAAGTTG 58.180 37.500 5.00 6.37 45.25 3.16
397 398 6.639632 ATGTTCACTTTAGTGCATGAAGTT 57.360 33.333 5.00 0.00 45.25 2.66
398 399 6.441274 CAATGTTCACTTTAGTGCATGAAGT 58.559 36.000 5.00 2.98 45.25 3.01
399 400 5.860182 CCAATGTTCACTTTAGTGCATGAAG 59.140 40.000 5.00 2.40 45.25 3.02
400 401 5.301551 ACCAATGTTCACTTTAGTGCATGAA 59.698 36.000 5.00 0.00 45.25 2.57
401 402 4.826733 ACCAATGTTCACTTTAGTGCATGA 59.173 37.500 5.00 0.00 45.25 3.07
402 403 4.919168 CACCAATGTTCACTTTAGTGCATG 59.081 41.667 5.00 0.00 45.25 4.06
403 404 4.022068 CCACCAATGTTCACTTTAGTGCAT 60.022 41.667 5.00 1.77 45.25 3.96
404 405 3.317711 CCACCAATGTTCACTTTAGTGCA 59.682 43.478 5.00 0.00 45.25 4.57
405 406 3.857010 GCCACCAATGTTCACTTTAGTGC 60.857 47.826 5.00 0.00 45.25 4.40
406 407 3.317711 TGCCACCAATGTTCACTTTAGTG 59.682 43.478 3.47 3.47 46.91 2.74
407 408 3.561143 TGCCACCAATGTTCACTTTAGT 58.439 40.909 0.00 0.00 0.00 2.24
408 409 4.037923 ACTTGCCACCAATGTTCACTTTAG 59.962 41.667 0.00 0.00 0.00 1.85
409 410 3.957497 ACTTGCCACCAATGTTCACTTTA 59.043 39.130 0.00 0.00 0.00 1.85
410 411 2.765699 ACTTGCCACCAATGTTCACTTT 59.234 40.909 0.00 0.00 0.00 2.66
411 412 2.387757 ACTTGCCACCAATGTTCACTT 58.612 42.857 0.00 0.00 0.00 3.16
412 413 2.071778 ACTTGCCACCAATGTTCACT 57.928 45.000 0.00 0.00 0.00 3.41
413 414 2.888834 AACTTGCCACCAATGTTCAC 57.111 45.000 0.00 0.00 0.00 3.18
414 415 5.112686 GTTTAAACTTGCCACCAATGTTCA 58.887 37.500 11.18 0.00 0.00 3.18
415 416 5.006261 GTGTTTAAACTTGCCACCAATGTTC 59.994 40.000 18.72 0.00 0.00 3.18
416 417 4.873259 GTGTTTAAACTTGCCACCAATGTT 59.127 37.500 18.72 0.00 0.00 2.71
417 418 4.438148 GTGTTTAAACTTGCCACCAATGT 58.562 39.130 18.72 0.00 0.00 2.71
418 419 3.807071 GGTGTTTAAACTTGCCACCAATG 59.193 43.478 18.72 0.00 43.96 2.82
419 420 4.066646 GGTGTTTAAACTTGCCACCAAT 57.933 40.909 18.72 0.00 43.96 3.16
420 421 3.528597 GGTGTTTAAACTTGCCACCAA 57.471 42.857 18.72 0.00 43.96 3.67
422 423 2.429250 AGTGGTGTTTAAACTTGCCACC 59.571 45.455 32.05 24.96 44.61 4.61
423 424 3.443976 CAGTGGTGTTTAAACTTGCCAC 58.556 45.455 30.53 30.53 41.94 5.01
424 425 2.428890 CCAGTGGTGTTTAAACTTGCCA 59.571 45.455 18.72 18.79 0.00 4.92
425 426 2.429250 ACCAGTGGTGTTTAAACTTGCC 59.571 45.455 15.86 16.79 32.98 4.52
426 427 3.793797 ACCAGTGGTGTTTAAACTTGC 57.206 42.857 15.86 9.17 32.98 4.01
438 439 6.388619 AAAAGAGGTAATATCACCAGTGGT 57.611 37.500 9.70 9.70 41.40 4.16
439 440 8.980481 AATAAAAGAGGTAATATCACCAGTGG 57.020 34.615 7.91 7.91 41.40 4.00
485 486 6.141053 GCGCGACAAAAAGTAAATTTAAGACA 59.859 34.615 12.10 0.00 0.00 3.41
486 487 6.141053 TGCGCGACAAAAAGTAAATTTAAGAC 59.859 34.615 12.10 0.00 0.00 3.01
488 489 6.427300 TGCGCGACAAAAAGTAAATTTAAG 57.573 33.333 12.10 0.00 0.00 1.85
489 490 6.129062 CCATGCGCGACAAAAAGTAAATTTAA 60.129 34.615 12.10 0.00 0.00 1.52
490 491 5.343593 CCATGCGCGACAAAAAGTAAATTTA 59.656 36.000 12.10 0.00 0.00 1.40
508 509 9.552114 TGAAAAATAAAATAAATTTGCCATGCG 57.448 25.926 0.00 0.00 32.27 4.73
557 579 7.656948 CAGAAGCAAAAGAAAATCCCATAAACA 59.343 33.333 0.00 0.00 0.00 2.83
624 646 8.846943 AGATTGTTGTTGTACATCATTGAGTA 57.153 30.769 7.43 0.00 29.06 2.59
628 650 6.324819 GGGAGATTGTTGTTGTACATCATTG 58.675 40.000 7.43 0.00 29.06 2.82
629 651 5.123820 CGGGAGATTGTTGTTGTACATCATT 59.876 40.000 7.43 0.00 29.06 2.57
630 652 4.635765 CGGGAGATTGTTGTTGTACATCAT 59.364 41.667 7.43 0.00 29.06 2.45
631 653 4.000325 CGGGAGATTGTTGTTGTACATCA 59.000 43.478 2.41 2.41 0.00 3.07
632 654 3.181510 GCGGGAGATTGTTGTTGTACATC 60.182 47.826 0.00 0.00 0.00 3.06
633 655 2.747446 GCGGGAGATTGTTGTTGTACAT 59.253 45.455 0.00 0.00 0.00 2.29
634 656 2.147958 GCGGGAGATTGTTGTTGTACA 58.852 47.619 0.00 0.00 0.00 2.90
635 657 2.147958 TGCGGGAGATTGTTGTTGTAC 58.852 47.619 0.00 0.00 0.00 2.90
636 658 2.552599 TGCGGGAGATTGTTGTTGTA 57.447 45.000 0.00 0.00 0.00 2.41
637 659 1.686355 TTGCGGGAGATTGTTGTTGT 58.314 45.000 0.00 0.00 0.00 3.32
638 660 2.791383 TTTGCGGGAGATTGTTGTTG 57.209 45.000 0.00 0.00 0.00 3.33
639 661 3.810310 TTTTTGCGGGAGATTGTTGTT 57.190 38.095 0.00 0.00 0.00 2.83
659 681 6.646240 GCCATCTGTTGTTGTACATCATTTTT 59.354 34.615 7.43 0.00 28.64 1.94
660 682 6.158598 GCCATCTGTTGTTGTACATCATTTT 58.841 36.000 7.43 0.00 28.64 1.82
661 683 5.243507 TGCCATCTGTTGTTGTACATCATTT 59.756 36.000 7.43 0.00 28.64 2.32
662 684 4.766373 TGCCATCTGTTGTTGTACATCATT 59.234 37.500 7.43 0.00 28.64 2.57
663 685 4.334552 TGCCATCTGTTGTTGTACATCAT 58.665 39.130 7.43 0.00 28.64 2.45
664 686 3.749226 TGCCATCTGTTGTTGTACATCA 58.251 40.909 2.41 2.41 0.00 3.07
665 687 4.764679 TTGCCATCTGTTGTTGTACATC 57.235 40.909 0.00 0.00 0.00 3.06
666 688 5.726980 ATTTGCCATCTGTTGTTGTACAT 57.273 34.783 0.00 0.00 0.00 2.29
667 689 5.528043 AATTTGCCATCTGTTGTTGTACA 57.472 34.783 0.00 0.00 0.00 2.90
668 690 6.257630 ACAAAATTTGCCATCTGTTGTTGTAC 59.742 34.615 5.52 0.00 0.00 2.90
669 691 6.344500 ACAAAATTTGCCATCTGTTGTTGTA 58.656 32.000 5.52 0.00 0.00 2.41
670 692 5.184711 ACAAAATTTGCCATCTGTTGTTGT 58.815 33.333 5.52 0.00 0.00 3.32
671 693 5.738118 ACAAAATTTGCCATCTGTTGTTG 57.262 34.783 5.52 0.00 0.00 3.33
697 719 5.068329 TCTGTACATCATGTGGCAAAACAAA 59.932 36.000 0.00 0.00 32.81 2.83
710 732 4.681781 GCTGCCACTAGTTCTGTACATCAT 60.682 45.833 0.00 0.00 0.00 2.45
716 738 2.525368 TCTGCTGCCACTAGTTCTGTA 58.475 47.619 0.00 0.00 0.00 2.74
717 739 1.342074 TCTGCTGCCACTAGTTCTGT 58.658 50.000 0.00 0.00 0.00 3.41
718 740 2.072298 GTTCTGCTGCCACTAGTTCTG 58.928 52.381 0.00 0.00 0.00 3.02
719 741 1.337260 CGTTCTGCTGCCACTAGTTCT 60.337 52.381 0.00 0.00 0.00 3.01
720 742 1.071605 CGTTCTGCTGCCACTAGTTC 58.928 55.000 0.00 0.00 0.00 3.01
745 1401 0.690192 TGGCTTTCTCCGTTGATCCA 59.310 50.000 0.00 0.00 0.00 3.41
753 1409 2.556287 GTTGCGTGGCTTTCTCCG 59.444 61.111 0.00 0.00 0.00 4.63
754 1414 1.959226 TCGTTGCGTGGCTTTCTCC 60.959 57.895 0.00 0.00 0.00 3.71
810 3469 1.380302 GGTGCCATGTCAAGGAGGT 59.620 57.895 0.00 0.00 0.00 3.85
827 3486 4.530857 GATCGGGTCCTGTGCCGG 62.531 72.222 0.00 0.00 0.00 6.13
828 3487 4.873129 CGATCGGGTCCTGTGCCG 62.873 72.222 7.38 0.00 0.00 5.69
874 3533 1.134159 TGAAACGGAACCCCTCGAAAA 60.134 47.619 0.00 0.00 0.00 2.29
939 3602 1.610624 GCTTGGTTCGGTTGGATCTGA 60.611 52.381 0.00 0.00 0.00 3.27
1018 3681 2.856988 AAGGGCCGTGAAGGGGAA 60.857 61.111 0.00 0.00 41.48 3.97
1108 3771 4.025401 GACGTTGTTGCCGGCCAG 62.025 66.667 26.77 11.04 0.00 4.85
1150 3813 1.805945 CGCTCCTTCGGTAGCACAC 60.806 63.158 0.00 0.00 38.70 3.82
1225 3888 0.473694 TCTCCAGGAGAAGGGCACAA 60.474 55.000 17.67 0.00 35.59 3.33
1241 3904 2.035321 CCGCTCAGACCCTTCTTATCTC 59.965 54.545 0.00 0.00 0.00 2.75
1348 4011 1.669999 AATGAATCAAGCGCAGGGGC 61.670 55.000 11.47 0.00 0.00 5.80
1378 4049 1.249407 ATAGATCTCCGTTCCGAGCC 58.751 55.000 0.00 0.00 0.00 4.70
1380 4051 5.615106 CGACTAAATAGATCTCCGTTCCGAG 60.615 48.000 0.00 0.00 0.00 4.63
1381 4052 4.212847 CGACTAAATAGATCTCCGTTCCGA 59.787 45.833 0.00 0.00 0.00 4.55
1386 4057 3.059051 GCGTCGACTAAATAGATCTCCGT 60.059 47.826 14.70 0.00 0.00 4.69
1400 4071 0.248743 TTGAGTTCGTTGCGTCGACT 60.249 50.000 14.70 4.44 39.58 4.18
1401 4072 0.782384 ATTGAGTTCGTTGCGTCGAC 59.218 50.000 5.18 5.18 39.58 4.20
1745 4427 0.178990 GCAGGAAACCCCACTTGTCT 60.179 55.000 0.00 0.00 37.41 3.41
2104 4786 7.865706 TGCCAGGAAGAAATTAATAGAGTTC 57.134 36.000 0.00 0.00 0.00 3.01
2106 4793 8.829373 ATTTGCCAGGAAGAAATTAATAGAGT 57.171 30.769 0.00 0.00 0.00 3.24
2111 4798 5.351458 GCGATTTGCCAGGAAGAAATTAAT 58.649 37.500 0.00 0.00 37.76 1.40
2112 4799 4.743493 GCGATTTGCCAGGAAGAAATTAA 58.257 39.130 0.00 0.00 37.76 1.40
2114 4801 3.236632 GCGATTTGCCAGGAAGAAATT 57.763 42.857 0.00 0.00 37.76 1.82
2138 4825 3.506844 TGTCAAGCATAGCAATCAAGCAA 59.493 39.130 0.00 0.00 36.85 3.91
2143 4830 4.705991 TCCATTTGTCAAGCATAGCAATCA 59.294 37.500 0.00 0.00 0.00 2.57
2144 4831 5.252969 TCCATTTGTCAAGCATAGCAATC 57.747 39.130 0.00 0.00 0.00 2.67
2195 4885 7.927629 AGCCGCAAAATCATTTCACATTTATAT 59.072 29.630 0.00 0.00 0.00 0.86
2196 4886 7.264221 AGCCGCAAAATCATTTCACATTTATA 58.736 30.769 0.00 0.00 0.00 0.98
2285 4978 0.035915 TGCAGTAATGGGTTAGCGCA 60.036 50.000 11.47 0.00 41.83 6.09
2306 4999 2.290122 ATCGCTAGCGCTTGCACTCT 62.290 55.000 35.95 18.44 42.66 3.24
2307 5000 1.424493 AATCGCTAGCGCTTGCACTC 61.424 55.000 35.95 13.28 42.66 3.51
2333 5026 1.785824 TGCCCCCTTGGATATGCATAA 59.214 47.619 11.13 0.00 35.39 1.90
2335 5028 0.178953 GTGCCCCCTTGGATATGCAT 60.179 55.000 3.79 3.79 35.39 3.96
2336 5029 1.229927 GTGCCCCCTTGGATATGCA 59.770 57.895 0.00 0.00 35.39 3.96
2337 5030 0.396974 TTGTGCCCCCTTGGATATGC 60.397 55.000 0.00 0.00 35.39 3.14
2338 5031 2.157640 TTTGTGCCCCCTTGGATATG 57.842 50.000 0.00 0.00 35.39 1.78
2339 5032 3.467103 AGTATTTGTGCCCCCTTGGATAT 59.533 43.478 0.00 0.00 35.39 1.63
2340 5033 2.856231 AGTATTTGTGCCCCCTTGGATA 59.144 45.455 0.00 0.00 35.39 2.59
2341 5034 1.645919 AGTATTTGTGCCCCCTTGGAT 59.354 47.619 0.00 0.00 35.39 3.41
2342 5035 1.080638 AGTATTTGTGCCCCCTTGGA 58.919 50.000 0.00 0.00 35.39 3.53
2344 5037 2.094675 CTCAGTATTTGTGCCCCCTTG 58.905 52.381 0.00 0.00 0.00 3.61
2348 5041 1.065126 AGAGCTCAGTATTTGTGCCCC 60.065 52.381 17.77 0.00 45.19 5.80
2349 5042 2.012673 CAGAGCTCAGTATTTGTGCCC 58.987 52.381 17.77 0.00 45.19 5.36
2382 5104 8.939929 CAAAGATGAAGCGATATATTGTACCAT 58.060 33.333 1.88 3.18 0.00 3.55
2384 5106 8.311650 ACAAAGATGAAGCGATATATTGTACC 57.688 34.615 1.88 0.00 0.00 3.34
2407 5132 6.403527 CCATCTTGCAATTGAGATAAACGACA 60.404 38.462 10.34 0.00 31.64 4.35
2423 5150 3.650281 TGCCTAGATTTCCATCTTGCA 57.350 42.857 0.00 5.48 40.82 4.08
2459 5193 2.541178 CGTAGTTCGGTACAGCCTGATC 60.541 54.545 0.00 0.00 35.71 2.92
2472 5206 6.263344 TCAAGGAGATAATGTTCGTAGTTCG 58.737 40.000 0.00 0.00 41.41 3.95
2493 5227 5.121298 CAGAAAGCTGAATCGAGTCAATCAA 59.879 40.000 17.16 0.00 45.17 2.57
2494 5228 4.628766 CAGAAAGCTGAATCGAGTCAATCA 59.371 41.667 17.16 2.63 45.17 2.57
2495 5229 4.629200 ACAGAAAGCTGAATCGAGTCAATC 59.371 41.667 17.16 11.28 45.17 2.67
2496 5230 4.573900 ACAGAAAGCTGAATCGAGTCAAT 58.426 39.130 17.16 5.74 45.17 2.57
2497 5231 3.995199 ACAGAAAGCTGAATCGAGTCAA 58.005 40.909 17.16 1.13 45.17 3.18
2516 5251 7.686438 ATCTCACATATTTACAAGCACAACA 57.314 32.000 0.00 0.00 0.00 3.33
2549 5284 7.432059 CAGAAGATCAGATACTGAACATGCTA 58.568 38.462 5.57 0.00 44.04 3.49
2556 5291 6.857437 TGAACCAGAAGATCAGATACTGAA 57.143 37.500 5.57 0.00 44.04 3.02
2560 5295 4.447054 CGCATGAACCAGAAGATCAGATAC 59.553 45.833 0.00 0.00 0.00 2.24
2664 7913 6.127535 ACTGACATGCAATATTTTTCAGGGAG 60.128 38.462 8.49 2.44 34.55 4.30
2716 8329 9.717942 CTTTTGGATTTACACCCATTGAAATTA 57.282 29.630 0.00 0.00 31.66 1.40
2717 8330 8.217111 ACTTTTGGATTTACACCCATTGAAATT 58.783 29.630 0.00 0.00 31.66 1.82
2759 8372 8.450964 CGATAAAAATCCTGTGATACAGTGTTT 58.549 33.333 0.00 0.00 44.50 2.83
2866 8483 1.026182 TGCCGTCCATGCTCATTGTC 61.026 55.000 0.00 0.00 0.00 3.18
2871 8516 2.358615 GTGTGCCGTCCATGCTCA 60.359 61.111 0.00 0.00 0.00 4.26
2910 8555 1.078759 GCCGTGACATGAACTCGGAG 61.079 60.000 27.39 2.83 43.88 4.63
2968 8617 2.356667 GGTTCAGCCTTCCTGGGG 59.643 66.667 0.00 0.00 42.05 4.96
2970 8619 2.045926 CGGGTTCAGCCTTCCTGG 60.046 66.667 0.00 0.00 42.05 4.45
2972 8621 3.330720 CCCGGGTTCAGCCTTCCT 61.331 66.667 14.18 0.00 37.43 3.36
2977 8626 1.963464 TACGATTCCCGGGTTCAGCC 61.963 60.000 22.86 4.25 43.93 4.85
3089 8747 1.672854 CGCCTGAGGACGATTACCCA 61.673 60.000 0.65 0.00 0.00 4.51
3135 8793 4.803426 GACGGCGCCTGAGGACAG 62.803 72.222 26.68 8.67 43.12 3.51
3204 8862 1.442688 CGCTTCTTTTCTTGGCCGC 60.443 57.895 0.00 0.00 0.00 6.53
3284 8945 2.715005 CCACACACACACGCCAAG 59.285 61.111 0.00 0.00 0.00 3.61
3285 8946 2.826287 CCCACACACACACGCCAA 60.826 61.111 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.