Multiple sequence alignment - TraesCS2B01G205300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G205300 chr2B 100.000 2783 0 0 1 2783 184653961 184656743 0.000000e+00 5140.0
1 TraesCS2B01G205300 chr2B 98.824 85 1 0 1601 1685 184655645 184655561 4.800000e-33 152.0
2 TraesCS2B01G205300 chr2B 93.750 96 4 2 1601 1694 777562215 777562120 2.890000e-30 143.0
3 TraesCS2B01G205300 chr2B 93.617 94 4 2 1601 1692 777562129 777562222 3.740000e-29 139.0
4 TraesCS2B01G205300 chrUn 97.746 976 22 0 1808 2783 18216302 18217277 0.000000e+00 1681.0
5 TraesCS2B01G205300 chrUn 95.148 742 22 6 706 1443 17491754 17491023 0.000000e+00 1158.0
6 TraesCS2B01G205300 chrUn 95.148 742 22 6 706 1443 339822581 339821850 0.000000e+00 1158.0
7 TraesCS2B01G205300 chrUn 87.652 575 54 6 1 575 17493190 17492633 0.000000e+00 652.0
8 TraesCS2B01G205300 chrUn 87.652 575 54 6 1 575 302457558 302458115 0.000000e+00 652.0
9 TraesCS2B01G205300 chrUn 95.489 133 6 0 574 706 17492598 17492466 2.170000e-51 213.0
10 TraesCS2B01G205300 chrUn 95.489 133 6 0 574 706 302458150 302458282 2.170000e-51 213.0
11 TraesCS2B01G205300 chrUn 93.407 91 2 2 1549 1639 357738538 357738452 6.250000e-27 132.0
12 TraesCS2B01G205300 chrUn 93.407 91 2 2 1549 1639 378019399 378019313 6.250000e-27 132.0
13 TraesCS2B01G205300 chrUn 93.407 91 2 2 1549 1639 452685232 452685146 6.250000e-27 132.0
14 TraesCS2B01G205300 chrUn 93.671 79 5 0 1690 1768 17482760 17482682 4.870000e-23 119.0
15 TraesCS2B01G205300 chrUn 94.737 76 4 0 1690 1765 373409314 373409389 4.870000e-23 119.0
16 TraesCS2B01G205300 chrUn 97.619 42 1 0 1510 1551 17482799 17482758 3.840000e-09 73.1
17 TraesCS2B01G205300 chrUn 97.619 42 1 0 1510 1551 373409275 373409316 3.840000e-09 73.1
18 TraesCS2B01G205300 chr1B 94.467 976 54 0 1808 2783 212751823 212752798 0.000000e+00 1504.0
19 TraesCS2B01G205300 chr2A 93.852 976 59 1 1808 2783 583148616 583149590 0.000000e+00 1469.0
20 TraesCS2B01G205300 chr2A 88.636 792 44 17 763 1551 137240053 137240801 0.000000e+00 922.0
21 TraesCS2B01G205300 chr2A 81.818 572 64 6 3 569 137230896 137231432 7.070000e-121 444.0
22 TraesCS2B01G205300 chr2A 88.835 206 19 2 574 775 137231474 137231679 1.650000e-62 250.0
23 TraesCS2B01G205300 chr2A 90.361 83 6 1 1734 1814 137240889 137240971 1.050000e-19 108.0
24 TraesCS2B01G205300 chr7A 92.828 976 70 0 1808 2783 69559820 69558845 0.000000e+00 1415.0
25 TraesCS2B01G205300 chr7A 92.111 976 77 0 1808 2783 18987834 18986859 0.000000e+00 1376.0
26 TraesCS2B01G205300 chr7A 91.189 976 84 2 1808 2783 161211815 161210842 0.000000e+00 1325.0
27 TraesCS2B01G205300 chr1A 92.725 976 70 1 1808 2783 59218551 59219525 0.000000e+00 1408.0
28 TraesCS2B01G205300 chr1A 92.016 977 75 1 1810 2783 29989430 29990406 0.000000e+00 1369.0
29 TraesCS2B01G205300 chr3A 92.008 976 78 0 1808 2783 710932074 710933049 0.000000e+00 1371.0
30 TraesCS2B01G205300 chr3A 100.000 51 0 0 1550 1600 469077559 469077509 8.210000e-16 95.3
31 TraesCS2B01G205300 chr2D 90.516 949 53 14 574 1514 131147356 131148275 0.000000e+00 1219.0
32 TraesCS2B01G205300 chr2D 92.068 353 19 4 574 923 131133873 131134219 3.220000e-134 488.0
33 TraesCS2B01G205300 chr2D 88.776 294 21 5 248 537 131130473 131130758 1.590000e-92 350.0
34 TraesCS2B01G205300 chr2D 88.800 125 11 2 378 502 131143680 131143801 1.730000e-32 150.0
35 TraesCS2B01G205300 chr7B 89.583 144 9 4 1550 1692 427824480 427824618 7.920000e-41 178.0
36 TraesCS2B01G205300 chr6B 87.333 150 14 5 1550 1695 422651538 422651686 1.710000e-37 167.0
37 TraesCS2B01G205300 chr4A 85.430 151 9 7 1549 1697 743773990 743773851 8.030000e-31 145.0
38 TraesCS2B01G205300 chr4B 92.784 97 5 2 1601 1695 668459423 668459519 3.740000e-29 139.0
39 TraesCS2B01G205300 chr4B 91.000 100 7 2 1601 1699 572830108 572830010 1.740000e-27 134.0
40 TraesCS2B01G205300 chr4B 91.489 94 6 2 1601 1692 668459509 668459416 8.090000e-26 128.0
41 TraesCS2B01G205300 chr5B 93.407 91 2 2 1549 1639 418319440 418319526 6.250000e-27 132.0
42 TraesCS2B01G205300 chr5B 93.407 91 2 2 1549 1639 418322631 418322717 6.250000e-27 132.0
43 TraesCS2B01G205300 chr5B 93.407 91 2 2 1549 1639 418324758 418324844 6.250000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G205300 chr2B 184653961 184656743 2782 False 5140.000000 5140 100.0000 1 2783 1 chr2B.!!$F1 2782
1 TraesCS2B01G205300 chrUn 18216302 18217277 975 False 1681.000000 1681 97.7460 1808 2783 1 chrUn.!!$F1 975
2 TraesCS2B01G205300 chrUn 339821850 339822581 731 True 1158.000000 1158 95.1480 706 1443 1 chrUn.!!$R1 737
3 TraesCS2B01G205300 chrUn 17491023 17493190 2167 True 674.333333 1158 92.7630 1 1443 3 chrUn.!!$R6 1442
4 TraesCS2B01G205300 chrUn 302457558 302458282 724 False 432.500000 652 91.5705 1 706 2 chrUn.!!$F2 705
5 TraesCS2B01G205300 chr1B 212751823 212752798 975 False 1504.000000 1504 94.4670 1808 2783 1 chr1B.!!$F1 975
6 TraesCS2B01G205300 chr2A 583148616 583149590 974 False 1469.000000 1469 93.8520 1808 2783 1 chr2A.!!$F1 975
7 TraesCS2B01G205300 chr2A 137240053 137240971 918 False 515.000000 922 89.4985 763 1814 2 chr2A.!!$F3 1051
8 TraesCS2B01G205300 chr2A 137230896 137231679 783 False 347.000000 444 85.3265 3 775 2 chr2A.!!$F2 772
9 TraesCS2B01G205300 chr7A 69558845 69559820 975 True 1415.000000 1415 92.8280 1808 2783 1 chr7A.!!$R2 975
10 TraesCS2B01G205300 chr7A 18986859 18987834 975 True 1376.000000 1376 92.1110 1808 2783 1 chr7A.!!$R1 975
11 TraesCS2B01G205300 chr7A 161210842 161211815 973 True 1325.000000 1325 91.1890 1808 2783 1 chr7A.!!$R3 975
12 TraesCS2B01G205300 chr1A 59218551 59219525 974 False 1408.000000 1408 92.7250 1808 2783 1 chr1A.!!$F2 975
13 TraesCS2B01G205300 chr1A 29989430 29990406 976 False 1369.000000 1369 92.0160 1810 2783 1 chr1A.!!$F1 973
14 TraesCS2B01G205300 chr3A 710932074 710933049 975 False 1371.000000 1371 92.0080 1808 2783 1 chr3A.!!$F1 975
15 TraesCS2B01G205300 chr2D 131143680 131148275 4595 False 684.500000 1219 89.6580 378 1514 2 chr2D.!!$F2 1136
16 TraesCS2B01G205300 chr2D 131130473 131134219 3746 False 419.000000 488 90.4220 248 923 2 chr2D.!!$F1 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 139 0.037975 CCATGTGGGCTTTGCTCAAC 60.038 55.0 0.0 0.0 42.3 3.18 F
961 8221 0.110192 GGCACTACAAGCTTTCACGC 60.110 55.0 0.0 0.0 0.0 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 8821 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 R
2734 10055 0.739462 CGCGATGTTAAGCCACCTGA 60.739 55.0 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.939592 CGACTACTATATCTCCATGCCGA 59.060 47.826 0.00 0.00 0.00 5.54
29 30 3.770040 CTCCATGCCGACGGGTCA 61.770 66.667 17.22 6.32 34.97 4.02
56 57 0.798776 CGGACTTTCATCTGTGTGCC 59.201 55.000 0.00 0.00 0.00 5.01
57 58 1.877680 CGGACTTTCATCTGTGTGCCA 60.878 52.381 0.00 0.00 0.00 4.92
89 90 1.605058 GAGCCACTCCACGCCTAGAA 61.605 60.000 0.00 0.00 0.00 2.10
95 96 1.123928 CTCCACGCCTAGAAAGGGAT 58.876 55.000 0.00 0.00 43.87 3.85
117 118 1.451387 CGGCCCTTTAGTCGCCAAT 60.451 57.895 0.00 0.00 43.17 3.16
137 138 2.353858 CCATGTGGGCTTTGCTCAA 58.646 52.632 0.00 0.00 42.30 3.02
138 139 0.037975 CCATGTGGGCTTTGCTCAAC 60.038 55.000 0.00 0.00 42.30 3.18
139 140 0.387622 CATGTGGGCTTTGCTCAACG 60.388 55.000 0.00 0.00 42.30 4.10
140 141 0.537143 ATGTGGGCTTTGCTCAACGA 60.537 50.000 0.00 0.00 42.30 3.85
141 142 1.282875 GTGGGCTTTGCTCAACGAC 59.717 57.895 0.00 0.00 42.30 4.34
142 143 2.250939 TGGGCTTTGCTCAACGACG 61.251 57.895 0.00 0.00 35.42 5.12
184 185 0.178909 AGATGGAGCGAGATGGGGAT 60.179 55.000 0.00 0.00 0.00 3.85
211 212 2.428925 CGGCGGCTAGGGTTCCTTA 61.429 63.158 7.61 0.00 34.61 2.69
238 239 1.807165 CCATGGTGAGAGCGACACG 60.807 63.158 2.57 0.00 38.90 4.49
278 279 0.904649 TGGTAGCATGACCAGGAGTG 59.095 55.000 2.18 0.00 44.79 3.51
381 396 4.561606 GTGCTACAATACACACGTCTAAGG 59.438 45.833 0.00 0.00 36.77 2.69
389 404 3.986277 ACACACGTCTAAGGTTAACAGG 58.014 45.455 8.10 0.00 0.00 4.00
392 407 5.068987 ACACACGTCTAAGGTTAACAGGTAA 59.931 40.000 8.10 0.00 0.00 2.85
460 475 5.474532 AGAAGCAAGCAGTCACATTATTGAA 59.525 36.000 0.00 0.00 0.00 2.69
471 486 7.479603 CAGTCACATTATTGAAAATGACGTCAG 59.520 37.037 24.41 7.88 38.84 3.51
482 497 0.596577 TGACGTCAGTGTGCTACCTC 59.403 55.000 15.76 0.00 0.00 3.85
483 498 0.596577 GACGTCAGTGTGCTACCTCA 59.403 55.000 11.55 0.00 0.00 3.86
484 499 1.000607 GACGTCAGTGTGCTACCTCAA 60.001 52.381 11.55 0.00 0.00 3.02
514 3975 3.674138 GCCTTTCATGCAGTATTGTGTGG 60.674 47.826 0.00 0.00 0.00 4.17
559 7058 7.165812 CACTTAAAGATTTGTGACAGTTTTCGG 59.834 37.037 0.00 0.00 32.72 4.30
641 7185 0.517316 GGCTGTTAAGTTCCAGTGCG 59.483 55.000 4.84 0.00 0.00 5.34
662 7206 4.690096 CGTCGTTCTTAGCTCTATACTCG 58.310 47.826 0.00 0.00 0.00 4.18
883 8143 3.642705 GTCTAACCAAACCGACTACGTT 58.357 45.455 0.00 0.00 37.88 3.99
958 8218 2.771089 CAGAGGCACTACAAGCTTTCA 58.229 47.619 0.00 0.00 41.55 2.69
961 8221 0.110192 GGCACTACAAGCTTTCACGC 60.110 55.000 0.00 0.00 0.00 5.34
1130 8398 2.982744 CTGCTCCTCTCGTGCGTCA 61.983 63.158 0.00 0.00 33.53 4.35
1135 8403 0.678684 TCCTCTCGTGCGTCACCATA 60.679 55.000 4.73 0.00 0.00 2.74
1219 8487 4.248842 CCACACCTGACCGTGCCA 62.249 66.667 0.00 0.00 37.25 4.92
1286 8554 1.599047 CCGTTCCCAGAGATGCACT 59.401 57.895 0.00 0.00 0.00 4.40
1410 8678 3.564235 TCTAAGTTGTATCGTGCACGT 57.436 42.857 35.74 25.21 40.80 4.49
1411 8679 4.683501 TCTAAGTTGTATCGTGCACGTA 57.316 40.909 35.74 24.22 40.80 3.57
1523 8792 1.399572 CGACTCGTGACTTGTGAGTG 58.600 55.000 0.00 0.00 42.71 3.51
1539 8808 2.036346 TGAGTGATGCCATGATCTACGG 59.964 50.000 0.00 0.00 0.00 4.02
1555 8824 1.643832 CGGCTACGTACGTACTCCC 59.356 63.158 23.60 20.37 34.81 4.30
1556 8825 0.811616 CGGCTACGTACGTACTCCCT 60.812 60.000 23.60 0.43 34.81 4.20
1557 8826 0.940833 GGCTACGTACGTACTCCCTC 59.059 60.000 23.60 8.74 0.00 4.30
1558 8827 0.940833 GCTACGTACGTACTCCCTCC 59.059 60.000 23.60 3.55 0.00 4.30
1559 8828 1.212616 CTACGTACGTACTCCCTCCG 58.787 60.000 23.60 10.64 0.00 4.63
1560 8829 0.535335 TACGTACGTACTCCCTCCGT 59.465 55.000 23.60 15.61 38.53 4.69
1561 8830 0.741221 ACGTACGTACTCCCTCCGTC 60.741 60.000 21.41 0.00 36.12 4.79
1562 8831 1.432270 CGTACGTACTCCCTCCGTCC 61.432 65.000 22.55 0.00 36.12 4.79
1563 8832 1.153369 TACGTACTCCCTCCGTCCG 60.153 63.158 0.00 0.00 36.12 4.79
1564 8833 2.593468 TACGTACTCCCTCCGTCCGG 62.593 65.000 0.00 0.00 36.12 5.14
1565 8834 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
1566 8835 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
1567 8836 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
1568 8837 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1569 8838 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1570 8839 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1571 8840 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1572 8841 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1573 8842 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1574 8843 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1575 8844 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1576 8845 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1577 8846 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
1578 8847 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
1579 8848 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
1580 8849 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
1581 8850 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
1582 8851 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
1583 8852 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
1584 8853 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
1585 8854 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
1586 8855 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
1587 8856 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
1595 8864 8.096414 ACTTGTCATCAAAATGAATAAAAGGGG 58.904 33.333 0.00 0.00 43.42 4.79
1596 8865 7.789202 TGTCATCAAAATGAATAAAAGGGGA 57.211 32.000 0.00 0.00 43.42 4.81
1597 8866 8.378115 TGTCATCAAAATGAATAAAAGGGGAT 57.622 30.769 0.00 0.00 43.42 3.85
1598 8867 8.259411 TGTCATCAAAATGAATAAAAGGGGATG 58.741 33.333 0.00 0.00 43.42 3.51
1599 8868 8.260114 GTCATCAAAATGAATAAAAGGGGATGT 58.740 33.333 0.00 0.00 43.42 3.06
1600 8869 8.824783 TCATCAAAATGAATAAAAGGGGATGTT 58.175 29.630 0.00 0.00 38.97 2.71
1601 8870 9.101655 CATCAAAATGAATAAAAGGGGATGTTC 57.898 33.333 0.00 0.00 34.61 3.18
1602 8871 7.619965 TCAAAATGAATAAAAGGGGATGTTCC 58.380 34.615 0.00 0.00 35.23 3.62
1603 8872 5.852282 AATGAATAAAAGGGGATGTTCCG 57.148 39.130 0.00 0.00 37.43 4.30
1604 8873 4.310022 TGAATAAAAGGGGATGTTCCGT 57.690 40.909 0.00 0.00 37.43 4.69
1605 8874 4.266714 TGAATAAAAGGGGATGTTCCGTC 58.733 43.478 0.00 0.00 37.43 4.79
1606 8875 2.793288 TAAAAGGGGATGTTCCGTCC 57.207 50.000 0.00 0.00 37.43 4.79
1607 8876 0.322187 AAAAGGGGATGTTCCGTCCG 60.322 55.000 0.00 0.00 40.24 4.79
1608 8877 1.196104 AAAGGGGATGTTCCGTCCGA 61.196 55.000 0.00 0.00 40.24 4.55
1609 8878 1.196104 AAGGGGATGTTCCGTCCGAA 61.196 55.000 0.00 0.00 40.24 4.30
1610 8879 1.196104 AGGGGATGTTCCGTCCGAAA 61.196 55.000 0.00 0.00 40.24 3.46
1611 8880 0.321830 GGGGATGTTCCGTCCGAAAA 60.322 55.000 0.00 0.00 40.24 2.29
1612 8881 1.680860 GGGGATGTTCCGTCCGAAAAT 60.681 52.381 0.00 0.00 40.24 1.82
1613 8882 2.420408 GGGGATGTTCCGTCCGAAAATA 60.420 50.000 0.00 0.00 40.24 1.40
1614 8883 2.610833 GGGATGTTCCGTCCGAAAATAC 59.389 50.000 0.00 0.00 40.24 1.89
1615 8884 3.528532 GGATGTTCCGTCCGAAAATACT 58.471 45.455 0.00 0.00 27.66 2.12
1616 8885 3.937079 GGATGTTCCGTCCGAAAATACTT 59.063 43.478 0.00 0.00 27.66 2.24
1617 8886 4.201783 GGATGTTCCGTCCGAAAATACTTG 60.202 45.833 0.00 0.00 27.66 3.16
1618 8887 3.731089 TGTTCCGTCCGAAAATACTTGT 58.269 40.909 0.00 0.00 30.39 3.16
1619 8888 3.742369 TGTTCCGTCCGAAAATACTTGTC 59.258 43.478 0.00 0.00 30.39 3.18
1620 8889 3.663995 TCCGTCCGAAAATACTTGTCA 57.336 42.857 0.00 0.00 0.00 3.58
1621 8890 4.196626 TCCGTCCGAAAATACTTGTCAT 57.803 40.909 0.00 0.00 0.00 3.06
1622 8891 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1623 8892 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1624 8893 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
1625 8894 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
1626 8895 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
1627 8896 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
1628 8897 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
1629 8898 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
1630 8899 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
1631 8900 9.357652 CCGAAAATACTTGTCATCAAAATGAAT 57.642 29.630 0.00 0.00 43.42 2.57
1639 8908 8.869109 ACTTGTCATCAAAATGAATAAAAGGGA 58.131 29.630 0.00 0.00 43.42 4.20
1640 8909 9.880157 CTTGTCATCAAAATGAATAAAAGGGAT 57.120 29.630 0.00 0.00 43.42 3.85
1641 8910 9.656040 TTGTCATCAAAATGAATAAAAGGGATG 57.344 29.630 0.00 0.00 43.42 3.51
1642 8911 8.814931 TGTCATCAAAATGAATAAAAGGGATGT 58.185 29.630 0.00 0.00 43.42 3.06
1643 8912 9.305925 GTCATCAAAATGAATAAAAGGGATGTC 57.694 33.333 0.00 0.00 43.42 3.06
1644 8913 9.033711 TCATCAAAATGAATAAAAGGGATGTCA 57.966 29.630 0.00 0.00 38.97 3.58
1645 8914 9.826574 CATCAAAATGAATAAAAGGGATGTCAT 57.173 29.630 0.00 0.00 34.61 3.06
1662 8931 8.652810 GGATGTCATCCCTTTTATTCATTTTG 57.347 34.615 19.82 0.00 43.88 2.44
1663 8932 8.477256 GGATGTCATCCCTTTTATTCATTTTGA 58.523 33.333 19.82 0.00 43.88 2.69
1665 8934 9.826574 ATGTCATCCCTTTTATTCATTTTGATG 57.173 29.630 0.00 0.00 0.00 3.07
1666 8935 9.033711 TGTCATCCCTTTTATTCATTTTGATGA 57.966 29.630 0.00 0.00 35.14 2.92
1667 8936 9.305925 GTCATCCCTTTTATTCATTTTGATGAC 57.694 33.333 11.57 11.57 45.06 3.06
1668 8937 9.033711 TCATCCCTTTTATTCATTTTGATGACA 57.966 29.630 0.00 0.00 33.24 3.58
1669 8938 9.656040 CATCCCTTTTATTCATTTTGATGACAA 57.344 29.630 0.00 0.00 31.12 3.18
1670 8939 9.880157 ATCCCTTTTATTCATTTTGATGACAAG 57.120 29.630 0.00 0.00 37.32 3.16
1671 8940 8.869109 TCCCTTTTATTCATTTTGATGACAAGT 58.131 29.630 0.00 0.00 37.32 3.16
1679 8948 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
1680 8949 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
1681 8950 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
1682 8951 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
1683 8952 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
1684 8953 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
1685 8954 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
1686 8955 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1687 8956 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1688 8957 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
1689 8958 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
1690 8959 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
1691 8960 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
1770 9087 5.477637 TGTTTATAGTTTTACAAGGGTGGGC 59.522 40.000 0.00 0.00 0.00 5.36
1773 9090 0.317160 GTTTTACAAGGGTGGGCTGC 59.683 55.000 0.00 0.00 0.00 5.25
1785 9102 0.394216 TGGGCTGCGCTGATAAATGT 60.394 50.000 19.32 0.00 0.00 2.71
1948 9265 2.232941 TCCTCCGACAGGTGTTAATCAC 59.767 50.000 0.77 1.05 43.95 3.06
2027 9344 1.006832 CTGCTATTTCGGTGAACGGG 58.993 55.000 0.00 0.00 44.45 5.28
2055 9372 3.009143 AGGGCACTTCTTCCGAAATAAGT 59.991 43.478 0.00 3.68 33.46 2.24
2261 9582 2.480610 CCATAGCATTGCGGCGGTT 61.481 57.895 9.78 0.00 39.27 4.44
2356 9677 4.916314 GATCGAGGCCGGGGAGGA 62.916 72.222 2.18 0.00 45.00 3.71
2412 9733 5.333299 GGGCAAATTCCCGTTTACTTATT 57.667 39.130 0.00 0.00 36.38 1.40
2451 9772 1.475280 CCAAACGACCCACGATAGAGA 59.525 52.381 0.00 0.00 45.77 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 2.764128 ACCCGTCGGCATGGAGAT 60.764 61.111 5.50 0.00 0.00 2.75
11 12 3.458163 GACCCGTCGGCATGGAGA 61.458 66.667 5.50 0.00 0.00 3.71
29 30 0.953960 GATGAAAGTCCGGTTGCGGT 60.954 55.000 0.00 0.00 0.00 5.68
31 32 0.443869 CAGATGAAAGTCCGGTTGCG 59.556 55.000 0.00 0.00 0.00 4.85
95 96 0.391528 GGCGACTAAAGGGCCGTTTA 60.392 55.000 24.97 24.97 37.06 2.01
106 107 1.093972 CACATGGCATTGGCGACTAA 58.906 50.000 0.00 0.00 42.47 2.24
137 138 3.292936 AGTGTCGAAGGGCGTCGT 61.293 61.111 8.75 0.00 41.80 4.34
138 139 2.543687 ATCAGTGTCGAAGGGCGTCG 62.544 60.000 3.07 3.07 42.48 5.12
139 140 1.078759 CATCAGTGTCGAAGGGCGTC 61.079 60.000 0.00 0.00 41.80 5.19
140 141 1.079819 CATCAGTGTCGAAGGGCGT 60.080 57.895 0.00 0.00 41.80 5.68
141 142 0.803768 CTCATCAGTGTCGAAGGGCG 60.804 60.000 0.00 0.00 42.69 6.13
142 143 0.460987 CCTCATCAGTGTCGAAGGGC 60.461 60.000 0.00 0.00 0.00 5.19
222 223 0.960861 TCTCGTGTCGCTCTCACCAT 60.961 55.000 0.00 0.00 32.86 3.55
278 279 3.809905 CATCTAGTTCTAAAGGTGGGCC 58.190 50.000 0.00 0.00 0.00 5.80
283 284 5.248477 TGGTGAAGCATCTAGTTCTAAAGGT 59.752 40.000 0.00 0.00 0.00 3.50
323 335 8.664798 CATTTGGTGAATCATTCGTAGAAGTAA 58.335 33.333 0.00 0.00 45.90 2.24
324 336 7.822334 ACATTTGGTGAATCATTCGTAGAAGTA 59.178 33.333 0.00 0.00 45.90 2.24
325 337 6.655003 ACATTTGGTGAATCATTCGTAGAAGT 59.345 34.615 0.00 0.00 45.90 3.01
326 338 7.076842 ACATTTGGTGAATCATTCGTAGAAG 57.923 36.000 0.00 0.00 45.90 2.85
327 339 7.447374 AACATTTGGTGAATCATTCGTAGAA 57.553 32.000 0.00 0.00 45.90 2.10
328 340 8.554835 TTAACATTTGGTGAATCATTCGTAGA 57.445 30.769 0.00 0.00 0.00 2.59
338 350 5.472137 AGCACGTACTTAACATTTGGTGAAT 59.528 36.000 0.00 0.00 0.00 2.57
376 391 7.012989 GCCATTACCATTACCTGTTAACCTTAG 59.987 40.741 2.48 0.00 0.00 2.18
381 396 5.448089 CGTGCCATTACCATTACCTGTTAAC 60.448 44.000 0.00 0.00 0.00 2.01
389 404 2.914059 ACCTCGTGCCATTACCATTAC 58.086 47.619 0.00 0.00 0.00 1.89
392 407 2.507407 AAACCTCGTGCCATTACCAT 57.493 45.000 0.00 0.00 0.00 3.55
460 475 2.037251 AGGTAGCACACTGACGTCATTT 59.963 45.455 20.40 6.33 0.00 2.32
471 486 0.039798 TCGTCGTTGAGGTAGCACAC 60.040 55.000 0.00 0.00 0.00 3.82
482 497 0.443869 CATGAAAGGCCTCGTCGTTG 59.556 55.000 5.23 5.31 0.00 4.10
483 498 1.298859 GCATGAAAGGCCTCGTCGTT 61.299 55.000 5.23 0.00 37.93 3.85
484 499 1.741770 GCATGAAAGGCCTCGTCGT 60.742 57.895 5.23 5.38 37.93 4.34
514 3975 8.983702 TTAAGTGATACACATAAAATACCCCC 57.016 34.615 4.75 0.00 36.74 5.40
559 7058 9.528018 TCTTTTCCATGTTAATGAAAAACTGAC 57.472 29.630 7.80 0.00 35.67 3.51
641 7185 4.211794 AGCGAGTATAGAGCTAAGAACGAC 59.788 45.833 0.00 0.00 39.74 4.34
662 7206 0.597377 CCTTTGGCCACAAAACGAGC 60.597 55.000 3.88 0.00 45.27 5.03
936 8196 0.671781 AAGCTTGTAGTGCCTCTGCG 60.672 55.000 0.00 0.00 41.78 5.18
958 8218 1.880819 CGTGGTACTTGTAGGGGCGT 61.881 60.000 0.00 0.00 0.00 5.68
961 8221 0.322322 TTGCGTGGTACTTGTAGGGG 59.678 55.000 0.00 0.00 0.00 4.79
984 8246 3.068732 TGATACTGATACTGAGCAGGTGC 59.931 47.826 2.20 0.00 43.70 5.01
1219 8487 2.037367 TCGTAGTCTGGCAGCCCT 59.963 61.111 9.64 10.53 0.00 5.19
1394 8662 5.177725 TCATATACGTGCACGATACAACT 57.822 39.130 42.94 22.57 43.02 3.16
1410 8678 3.061563 GCACACGAACAACGCTTCATATA 59.938 43.478 0.00 0.00 46.94 0.86
1411 8679 2.159707 GCACACGAACAACGCTTCATAT 60.160 45.455 0.00 0.00 46.94 1.78
1483 8751 2.353803 GCAGGAACTCACAGGATAACGT 60.354 50.000 0.00 0.00 34.60 3.99
1539 8808 0.940833 GGAGGGAGTACGTACGTAGC 59.059 60.000 27.48 20.93 0.00 3.58
1546 8815 2.437359 CGGACGGAGGGAGTACGT 60.437 66.667 0.00 0.00 40.75 3.57
1551 8820 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1552 8821 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1553 8822 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1554 8823 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1555 8824 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1556 8825 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1557 8826 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
1558 8827 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
1559 8828 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
1560 8829 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
1561 8830 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
1562 8831 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
1569 8838 8.096414 CCCCTTTTATTCATTTTGATGACAAGT 58.904 33.333 0.00 0.00 37.32 3.16
1570 8839 8.313292 TCCCCTTTTATTCATTTTGATGACAAG 58.687 33.333 0.00 0.00 37.32 3.16
1571 8840 8.200024 TCCCCTTTTATTCATTTTGATGACAA 57.800 30.769 0.00 0.00 0.00 3.18
1572 8841 7.789202 TCCCCTTTTATTCATTTTGATGACA 57.211 32.000 0.00 0.00 0.00 3.58
1573 8842 8.260114 ACATCCCCTTTTATTCATTTTGATGAC 58.740 33.333 0.00 0.00 32.39 3.06
1574 8843 8.378115 ACATCCCCTTTTATTCATTTTGATGA 57.622 30.769 0.00 0.00 32.39 2.92
1575 8844 9.101655 GAACATCCCCTTTTATTCATTTTGATG 57.898 33.333 0.00 0.00 33.80 3.07
1576 8845 8.267183 GGAACATCCCCTTTTATTCATTTTGAT 58.733 33.333 0.00 0.00 0.00 2.57
1577 8846 7.578571 CGGAACATCCCCTTTTATTCATTTTGA 60.579 37.037 0.00 0.00 31.13 2.69
1578 8847 6.534793 CGGAACATCCCCTTTTATTCATTTTG 59.465 38.462 0.00 0.00 31.13 2.44
1579 8848 6.212589 ACGGAACATCCCCTTTTATTCATTTT 59.787 34.615 0.00 0.00 31.13 1.82
1580 8849 5.719563 ACGGAACATCCCCTTTTATTCATTT 59.280 36.000 0.00 0.00 31.13 2.32
1581 8850 5.269189 ACGGAACATCCCCTTTTATTCATT 58.731 37.500 0.00 0.00 31.13 2.57
1582 8851 4.867086 ACGGAACATCCCCTTTTATTCAT 58.133 39.130 0.00 0.00 31.13 2.57
1583 8852 4.266714 GACGGAACATCCCCTTTTATTCA 58.733 43.478 0.00 0.00 31.13 2.57
1584 8853 3.630769 GGACGGAACATCCCCTTTTATTC 59.369 47.826 0.00 0.00 32.63 1.75
1585 8854 3.628008 GGACGGAACATCCCCTTTTATT 58.372 45.455 0.00 0.00 32.63 1.40
1586 8855 2.420967 CGGACGGAACATCCCCTTTTAT 60.421 50.000 0.00 0.00 37.45 1.40
1587 8856 1.065998 CGGACGGAACATCCCCTTTTA 60.066 52.381 0.00 0.00 37.45 1.52
1588 8857 0.322187 CGGACGGAACATCCCCTTTT 60.322 55.000 0.00 0.00 37.45 2.27
1589 8858 1.196104 TCGGACGGAACATCCCCTTT 61.196 55.000 0.00 0.00 37.45 3.11
1590 8859 1.196104 TTCGGACGGAACATCCCCTT 61.196 55.000 0.00 0.00 37.45 3.95
1591 8860 1.196104 TTTCGGACGGAACATCCCCT 61.196 55.000 0.00 0.00 37.45 4.79
1592 8861 0.321830 TTTTCGGACGGAACATCCCC 60.322 55.000 0.00 0.00 37.45 4.81
1593 8862 1.746470 ATTTTCGGACGGAACATCCC 58.254 50.000 0.00 0.00 37.45 3.85
1594 8863 3.528532 AGTATTTTCGGACGGAACATCC 58.471 45.455 0.00 0.00 37.34 3.51
1595 8864 4.390909 ACAAGTATTTTCGGACGGAACATC 59.609 41.667 0.00 0.00 33.42 3.06
1596 8865 4.320870 ACAAGTATTTTCGGACGGAACAT 58.679 39.130 0.00 0.00 33.42 2.71
1597 8866 3.731089 ACAAGTATTTTCGGACGGAACA 58.269 40.909 0.00 0.00 33.42 3.18
1598 8867 3.742369 TGACAAGTATTTTCGGACGGAAC 59.258 43.478 0.00 0.00 33.42 3.62
1599 8868 3.992643 TGACAAGTATTTTCGGACGGAA 58.007 40.909 0.00 0.00 0.00 4.30
1600 8869 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
1601 8870 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
1602 8871 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
1603 8872 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
1604 8873 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
1605 8874 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
1613 8882 8.869109 TCCCTTTTATTCATTTTGATGACAAGT 58.131 29.630 0.00 0.00 37.32 3.16
1614 8883 9.880157 ATCCCTTTTATTCATTTTGATGACAAG 57.120 29.630 0.00 0.00 37.32 3.16
1615 8884 9.656040 CATCCCTTTTATTCATTTTGATGACAA 57.344 29.630 0.00 0.00 31.12 3.18
1616 8885 8.814931 ACATCCCTTTTATTCATTTTGATGACA 58.185 29.630 0.00 0.00 33.22 3.58
1617 8886 9.305925 GACATCCCTTTTATTCATTTTGATGAC 57.694 33.333 0.00 0.00 33.22 3.06
1618 8887 9.033711 TGACATCCCTTTTATTCATTTTGATGA 57.966 29.630 0.00 0.00 33.22 2.92
1619 8888 9.826574 ATGACATCCCTTTTATTCATTTTGATG 57.173 29.630 0.00 0.00 34.68 3.07
1621 8890 8.477256 GGATGACATCCCTTTTATTCATTTTGA 58.523 33.333 22.12 0.00 43.88 2.69
1622 8891 8.652810 GGATGACATCCCTTTTATTCATTTTG 57.347 34.615 22.12 0.00 43.88 2.44
1639 8908 9.826574 CATCAAAATGAATAAAAGGGATGACAT 57.173 29.630 0.00 0.00 34.61 3.06
1640 8909 9.033711 TCATCAAAATGAATAAAAGGGATGACA 57.966 29.630 0.00 0.00 38.97 3.58
1641 8910 9.305925 GTCATCAAAATGAATAAAAGGGATGAC 57.694 33.333 13.15 13.15 46.43 3.06
1642 8911 9.033711 TGTCATCAAAATGAATAAAAGGGATGA 57.966 29.630 0.00 0.00 43.42 2.92
1643 8912 9.656040 TTGTCATCAAAATGAATAAAAGGGATG 57.344 29.630 0.00 0.00 43.42 3.51
1644 8913 9.880157 CTTGTCATCAAAATGAATAAAAGGGAT 57.120 29.630 0.00 0.00 43.42 3.85
1645 8914 8.869109 ACTTGTCATCAAAATGAATAAAAGGGA 58.131 29.630 0.00 0.00 43.42 4.20
1653 8922 9.357652 CCGAAAATACTTGTCATCAAAATGAAT 57.642 29.630 0.00 0.00 43.42 2.57
1654 8923 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
1655 8924 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
1656 8925 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
1657 8926 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
1658 8927 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
1659 8928 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
1660 8929 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
1661 8930 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1662 8931 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1663 8932 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1664 8933 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1665 8934 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1666 8935 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1667 8936 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1668 8937 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1669 8938 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1670 8939 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1671 8940 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1672 8941 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
1673 8942 1.479323 CATACTCCCTCCGTCCGAAAA 59.521 52.381 0.00 0.00 0.00 2.29
1674 8943 1.108776 CATACTCCCTCCGTCCGAAA 58.891 55.000 0.00 0.00 0.00 3.46
1675 8944 0.033796 ACATACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
1676 8945 0.750546 CACATACTCCCTCCGTCCGA 60.751 60.000 0.00 0.00 0.00 4.55
1677 8946 1.734137 CACATACTCCCTCCGTCCG 59.266 63.158 0.00 0.00 0.00 4.79
1678 8947 1.442148 GCACATACTCCCTCCGTCC 59.558 63.158 0.00 0.00 0.00 4.79
1679 8948 1.043673 AGGCACATACTCCCTCCGTC 61.044 60.000 0.00 0.00 0.00 4.79
1680 8949 0.260816 TAGGCACATACTCCCTCCGT 59.739 55.000 0.00 0.00 0.00 4.69
1681 8950 0.962489 CTAGGCACATACTCCCTCCG 59.038 60.000 0.00 0.00 0.00 4.63
1682 8951 1.964933 GTCTAGGCACATACTCCCTCC 59.035 57.143 0.00 0.00 0.00 4.30
1683 8952 2.625790 CTGTCTAGGCACATACTCCCTC 59.374 54.545 0.00 0.00 0.00 4.30
1684 8953 2.672098 CTGTCTAGGCACATACTCCCT 58.328 52.381 0.00 0.00 0.00 4.20
1685 8954 1.689273 CCTGTCTAGGCACATACTCCC 59.311 57.143 0.00 0.00 37.25 4.30
1686 8955 2.667470 TCCTGTCTAGGCACATACTCC 58.333 52.381 0.00 0.00 44.22 3.85
1687 8956 3.639094 ACATCCTGTCTAGGCACATACTC 59.361 47.826 0.00 0.00 44.22 2.59
1688 8957 3.647636 ACATCCTGTCTAGGCACATACT 58.352 45.455 0.00 0.00 44.22 2.12
1689 8958 4.341235 TGTACATCCTGTCTAGGCACATAC 59.659 45.833 0.00 0.00 44.22 2.39
1690 8959 4.542697 TGTACATCCTGTCTAGGCACATA 58.457 43.478 0.00 0.00 44.22 2.29
1691 8960 3.374764 TGTACATCCTGTCTAGGCACAT 58.625 45.455 0.00 0.00 44.22 3.21
1743 9058 9.245481 CCCACCCTTGTAAAACTATAAACATAA 57.755 33.333 0.00 0.00 0.00 1.90
1754 9069 0.317160 GCAGCCCACCCTTGTAAAAC 59.683 55.000 0.00 0.00 0.00 2.43
1755 9070 1.175983 CGCAGCCCACCCTTGTAAAA 61.176 55.000 0.00 0.00 0.00 1.52
1756 9071 1.602323 CGCAGCCCACCCTTGTAAA 60.602 57.895 0.00 0.00 0.00 2.01
1757 9072 2.033448 CGCAGCCCACCCTTGTAA 59.967 61.111 0.00 0.00 0.00 2.41
1770 9087 3.120234 TGTCAACACATTTATCAGCGCAG 60.120 43.478 11.47 0.00 0.00 5.18
1773 9090 4.926860 TCTGTCAACACATTTATCAGCG 57.073 40.909 0.00 0.00 0.00 5.18
2055 9372 2.528818 CCCCTTGCCTGAGACCACA 61.529 63.158 0.00 0.00 0.00 4.17
2261 9582 5.547465 TCAAAACTGAGAAGAATCGCCTTA 58.453 37.500 0.00 0.00 0.00 2.69
2451 9772 1.271597 GGCGCATAGAGGATCCCAATT 60.272 52.381 10.83 0.00 33.66 2.32
2734 10055 0.739462 CGCGATGTTAAGCCACCTGA 60.739 55.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.