Multiple sequence alignment - TraesCS2B01G205000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G205000 chr2B 100.000 2474 0 0 1 2474 184512528 184515001 0.000000e+00 4569.0
1 TraesCS2B01G205000 chr2B 91.054 816 61 4 795 1606 184635131 184635938 0.000000e+00 1092.0
2 TraesCS2B01G205000 chr2B 90.931 816 61 5 795 1606 184612217 184613023 0.000000e+00 1085.0
3 TraesCS2B01G205000 chr2B 91.202 807 58 5 795 1597 184637419 184638216 0.000000e+00 1085.0
4 TraesCS2B01G205000 chr2B 90.809 816 60 6 795 1606 184572353 184573157 0.000000e+00 1077.0
5 TraesCS2B01G205000 chr2B 86.270 488 28 14 1769 2223 184576157 184576638 6.150000e-136 494.0
6 TraesCS2B01G205000 chr2B 95.429 175 7 1 2215 2388 540428433 540428259 6.740000e-71 278.0
7 TraesCS2B01G205000 chr2B 83.173 208 30 4 589 794 184561267 184561471 4.200000e-43 185.0
8 TraesCS2B01G205000 chr2B 83.173 208 30 4 589 794 184637182 184637386 4.200000e-43 185.0
9 TraesCS2B01G205000 chr2B 82.692 208 31 4 589 794 184611980 184612184 1.950000e-41 180.0
10 TraesCS2B01G205000 chr2B 82.692 208 31 4 589 794 184634894 184635098 1.950000e-41 180.0
11 TraesCS2B01G205000 chr2B 81.313 198 32 4 589 784 184652854 184653048 3.290000e-34 156.0
12 TraesCS2B01G205000 chrUn 87.971 823 83 8 790 1606 13406131 13406943 0.000000e+00 957.0
13 TraesCS2B01G205000 chrUn 93.443 427 28 0 1065 1491 476372068 476371642 3.470000e-178 634.0
14 TraesCS2B01G205000 chrUn 81.073 317 14 11 1786 2085 13408559 13408846 6.930000e-51 211.0
15 TraesCS2B01G205000 chrUn 81.073 317 14 16 1786 2085 360044788 360045075 6.930000e-51 211.0
16 TraesCS2B01G205000 chrUn 83.673 196 28 3 599 793 13405901 13406093 5.440000e-42 182.0
17 TraesCS2B01G205000 chr2D 86.391 845 75 16 790 1606 131114292 131115124 0.000000e+00 887.0
18 TraesCS2B01G205000 chr2D 87.844 617 61 6 790 1401 131052223 131052830 0.000000e+00 712.0
19 TraesCS2B01G205000 chr2D 92.405 237 12 4 1768 2000 131115121 131115355 1.420000e-87 333.0
20 TraesCS2B01G205000 chr2D 87.437 199 10 6 1889 2085 131054113 131054298 5.360000e-52 215.0
21 TraesCS2B01G205000 chr2D 91.765 85 7 0 710 794 131052102 131052186 4.320000e-23 119.0
22 TraesCS2B01G205000 chr2D 93.333 60 4 0 2026 2085 131115824 131115883 3.390000e-14 89.8
23 TraesCS2B01G205000 chr2A 90.000 590 56 3 1018 1606 137140757 137141344 0.000000e+00 760.0
24 TraesCS2B01G205000 chr2A 89.119 193 17 4 1580 1770 221762405 221762215 1.140000e-58 237.0
25 TraesCS2B01G205000 chr2A 90.968 155 10 1 1786 1936 137142942 137143096 3.230000e-49 206.0
26 TraesCS2B01G205000 chr2A 83.333 90 12 3 516 603 632505887 632505975 2.040000e-11 80.5
27 TraesCS2B01G205000 chr5D 89.808 520 34 6 1 501 410536588 410537107 0.000000e+00 649.0
28 TraesCS2B01G205000 chr7D 88.506 522 31 10 1 502 123366916 123367428 2.720000e-169 604.0
29 TraesCS2B01G205000 chr3D 88.100 521 41 9 6 506 94552951 94553470 1.270000e-167 599.0
30 TraesCS2B01G205000 chr3D 93.182 176 11 1 2213 2388 232559977 232559803 8.780000e-65 257.0
31 TraesCS2B01G205000 chr3D 92.308 169 13 0 1605 1773 610427401 610427233 8.840000e-60 241.0
32 TraesCS2B01G205000 chr3D 86.321 212 22 5 1588 1796 522773392 522773185 8.900000e-55 224.0
33 TraesCS2B01G205000 chr7B 88.539 349 23 7 170 502 637503967 637503620 8.240000e-110 407.0
34 TraesCS2B01G205000 chr7B 92.593 135 10 0 1 135 637504107 637503973 6.980000e-46 195.0
35 TraesCS2B01G205000 chr4B 94.505 182 8 2 2205 2386 102467870 102467691 1.870000e-71 279.0
36 TraesCS2B01G205000 chr4B 90.805 174 16 0 1601 1774 71600792 71600619 1.480000e-57 233.0
37 TraesCS2B01G205000 chr3B 94.675 169 9 0 2222 2390 52744106 52743938 1.890000e-66 263.0
38 TraesCS2B01G205000 chr3B 94.186 172 9 1 2214 2385 459271929 459272099 6.790000e-66 261.0
39 TraesCS2B01G205000 chr3B 92.737 179 11 1 2207 2385 428703861 428704037 8.780000e-65 257.0
40 TraesCS2B01G205000 chr1A 92.857 182 12 1 2206 2386 491136150 491136331 1.890000e-66 263.0
41 TraesCS2B01G205000 chr1B 92.737 179 13 0 2220 2398 542144142 542143964 2.440000e-65 259.0
42 TraesCS2B01G205000 chr1B 93.143 175 12 0 2213 2387 426903221 426903395 8.780000e-65 257.0
43 TraesCS2B01G205000 chr6D 92.308 169 13 0 1601 1769 97856588 97856420 8.840000e-60 241.0
44 TraesCS2B01G205000 chr6D 88.542 192 20 2 1585 1776 389700723 389700534 5.320000e-57 231.0
45 TraesCS2B01G205000 chr6A 91.477 176 12 3 1596 1769 521988232 521988406 3.180000e-59 239.0
46 TraesCS2B01G205000 chr4A 91.379 174 14 1 1597 1770 200693820 200693992 1.140000e-58 237.0
47 TraesCS2B01G205000 chr4D 88.889 189 19 2 1584 1772 230473276 230473462 5.320000e-57 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G205000 chr2B 184512528 184515001 2473 False 4569.000000 4569 100.000000 1 2474 1 chr2B.!!$F1 2473
1 TraesCS2B01G205000 chr2B 184572353 184576638 4285 False 785.500000 1077 88.539500 795 2223 2 chr2B.!!$F4 1428
2 TraesCS2B01G205000 chr2B 184634894 184638216 3322 False 635.500000 1092 87.030250 589 1606 4 chr2B.!!$F6 1017
3 TraesCS2B01G205000 chr2B 184611980 184613023 1043 False 632.500000 1085 86.811500 589 1606 2 chr2B.!!$F5 1017
4 TraesCS2B01G205000 chrUn 13405901 13408846 2945 False 450.000000 957 84.239000 599 2085 3 chrUn.!!$F2 1486
5 TraesCS2B01G205000 chr2D 131114292 131115883 1591 False 436.600000 887 90.709667 790 2085 3 chr2D.!!$F2 1295
6 TraesCS2B01G205000 chr2D 131052102 131054298 2196 False 348.666667 712 89.015333 710 2085 3 chr2D.!!$F1 1375
7 TraesCS2B01G205000 chr2A 137140757 137143096 2339 False 483.000000 760 90.484000 1018 1936 2 chr2A.!!$F2 918
8 TraesCS2B01G205000 chr5D 410536588 410537107 519 False 649.000000 649 89.808000 1 501 1 chr5D.!!$F1 500
9 TraesCS2B01G205000 chr7D 123366916 123367428 512 False 604.000000 604 88.506000 1 502 1 chr7D.!!$F1 501
10 TraesCS2B01G205000 chr3D 94552951 94553470 519 False 599.000000 599 88.100000 6 506 1 chr3D.!!$F1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
392 410 1.02192 GGAAAGCGACAGGAAGAGCC 61.022 60.0 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2320 9809 1.002544 TGGACACAACATACGGATGCA 59.997 47.619 7.78 0.0 36.43 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.099431 GGAGCTTCACTGCAGCGAG 61.099 63.158 15.27 10.34 42.55 5.03
78 79 2.327343 GCTCCATTGCAGCACGACA 61.327 57.895 0.00 0.00 36.82 4.35
94 95 2.438434 CAACGATGGGGGTGCTCC 60.438 66.667 0.00 0.00 0.00 4.70
108 109 3.175240 CTCCGACGAAGCACGCTG 61.175 66.667 0.00 0.00 46.94 5.18
191 192 3.017581 GGTGCCAGGGGATCACCT 61.018 66.667 12.00 12.00 45.04 4.00
392 410 1.021920 GGAAAGCGACAGGAAGAGCC 61.022 60.000 0.00 0.00 0.00 4.70
423 442 7.241628 AGAAGATAAGGTTGGGATGAAAAAGT 58.758 34.615 0.00 0.00 0.00 2.66
477 505 6.272324 TGAGAGAGGAGGTTTAGGAAAATCAA 59.728 38.462 0.00 0.00 0.00 2.57
482 510 2.823747 AGGTTTAGGAAAATCAACCGGC 59.176 45.455 0.00 0.00 43.09 6.13
502 530 4.622740 CGGCTGATTTTGAACATTTTCCTC 59.377 41.667 0.00 0.00 0.00 3.71
503 531 5.565439 CGGCTGATTTTGAACATTTTCCTCT 60.565 40.000 0.00 0.00 0.00 3.69
504 532 6.349280 CGGCTGATTTTGAACATTTTCCTCTA 60.349 38.462 0.00 0.00 0.00 2.43
507 535 9.260002 GCTGATTTTGAACATTTTCCTCTAAAA 57.740 29.630 0.00 0.00 41.21 1.52
513 541 9.887406 TTTGAACATTTTCCTCTAAAATACGTC 57.113 29.630 0.00 0.00 44.27 4.34
514 542 8.842358 TGAACATTTTCCTCTAAAATACGTCT 57.158 30.769 0.00 0.00 44.27 4.18
515 543 8.717821 TGAACATTTTCCTCTAAAATACGTCTG 58.282 33.333 0.00 0.00 44.27 3.51
516 544 8.617290 AACATTTTCCTCTAAAATACGTCTGT 57.383 30.769 0.00 0.00 44.27 3.41
517 545 9.715121 AACATTTTCCTCTAAAATACGTCTGTA 57.285 29.630 0.00 0.00 44.27 2.74
518 546 9.367444 ACATTTTCCTCTAAAATACGTCTGTAG 57.633 33.333 0.00 0.00 44.27 2.74
519 547 9.367444 CATTTTCCTCTAAAATACGTCTGTAGT 57.633 33.333 0.00 0.00 44.27 2.73
520 548 8.976986 TTTTCCTCTAAAATACGTCTGTAGTC 57.023 34.615 0.00 0.00 32.05 2.59
521 549 7.934855 TTCCTCTAAAATACGTCTGTAGTCT 57.065 36.000 0.00 0.00 33.17 3.24
522 550 9.453572 TTTCCTCTAAAATACGTCTGTAGTCTA 57.546 33.333 0.00 0.00 33.17 2.59
523 551 9.624373 TTCCTCTAAAATACGTCTGTAGTCTAT 57.376 33.333 0.00 0.00 33.17 1.98
597 625 9.920946 TTTAAGAATGGAGGAAGTAGCAATATT 57.079 29.630 0.00 0.00 0.00 1.28
598 626 9.920946 TTAAGAATGGAGGAAGTAGCAATATTT 57.079 29.630 0.00 0.00 0.00 1.40
599 627 7.814264 AGAATGGAGGAAGTAGCAATATTTG 57.186 36.000 0.00 0.00 0.00 2.32
600 628 7.577303 AGAATGGAGGAAGTAGCAATATTTGA 58.423 34.615 0.00 0.00 0.00 2.69
601 629 8.223330 AGAATGGAGGAAGTAGCAATATTTGAT 58.777 33.333 0.00 0.00 0.00 2.57
602 630 8.773033 AATGGAGGAAGTAGCAATATTTGATT 57.227 30.769 0.00 0.00 0.00 2.57
603 631 7.807977 TGGAGGAAGTAGCAATATTTGATTC 57.192 36.000 0.00 0.00 0.00 2.52
604 632 7.345691 TGGAGGAAGTAGCAATATTTGATTCA 58.654 34.615 0.00 0.00 0.00 2.57
605 633 8.000709 TGGAGGAAGTAGCAATATTTGATTCAT 58.999 33.333 0.00 0.00 0.00 2.57
606 634 9.507329 GGAGGAAGTAGCAATATTTGATTCATA 57.493 33.333 0.00 0.00 0.00 2.15
637 665 9.127277 TGAGTTAATTGTTAGCCTGTTAAACTT 57.873 29.630 0.00 0.00 0.00 2.66
649 677 6.165659 CCTGTTAAACTTCAGGTTCGTATG 57.834 41.667 2.38 0.00 44.19 2.39
654 682 2.180276 ACTTCAGGTTCGTATGGCTCT 58.820 47.619 0.00 0.00 0.00 4.09
663 691 2.722094 TCGTATGGCTCTGGCAAAAAT 58.278 42.857 0.00 0.00 42.43 1.82
668 696 2.836262 TGGCTCTGGCAAAAATTGTTG 58.164 42.857 3.80 3.80 40.87 3.33
673 702 5.469760 GGCTCTGGCAAAAATTGTTGTTTAT 59.530 36.000 10.07 0.00 40.87 1.40
676 705 7.587392 GCTCTGGCAAAAATTGTTGTTTATTTC 59.413 33.333 10.07 0.00 38.54 2.17
677 706 8.498054 TCTGGCAAAAATTGTTGTTTATTTCA 57.502 26.923 10.07 0.00 0.00 2.69
682 711 9.875675 GCAAAAATTGTTGTTTATTTCAGCATA 57.124 25.926 10.07 0.00 0.00 3.14
695 724 8.519492 TTATTTCAGCATAGCTTGTTTTGTTC 57.481 30.769 0.00 0.00 36.40 3.18
699 728 5.042593 CAGCATAGCTTGTTTTGTTCAACA 58.957 37.500 0.00 0.00 36.40 3.33
746 775 4.697352 ACAGCTGACCTAACATTGTTGATC 59.303 41.667 23.35 7.29 0.00 2.92
748 777 5.064452 CAGCTGACCTAACATTGTTGATCTC 59.936 44.000 8.42 2.64 0.00 2.75
749 778 4.333926 GCTGACCTAACATTGTTGATCTCC 59.666 45.833 12.30 0.00 0.00 3.71
752 781 5.013079 TGACCTAACATTGTTGATCTCCTGT 59.987 40.000 12.30 0.00 0.00 4.00
756 785 4.801330 ACATTGTTGATCTCCTGTACGA 57.199 40.909 0.00 0.00 0.00 3.43
817 888 5.103940 ACCCAAACCTTGAGCACATATAGAT 60.104 40.000 0.00 0.00 0.00 1.98
829 900 7.278646 TGAGCACATATAGATTCAGAAACACAC 59.721 37.037 0.00 0.00 0.00 3.82
834 905 9.102757 ACATATAGATTCAGAAACACACACATC 57.897 33.333 0.00 0.00 0.00 3.06
835 906 6.992063 ATAGATTCAGAAACACACACATCC 57.008 37.500 0.00 0.00 0.00 3.51
843 914 1.865865 ACACACACATCCGACAGAAC 58.134 50.000 0.00 0.00 0.00 3.01
850 921 1.552337 ACATCCGACAGAACTGCAGAT 59.448 47.619 23.35 9.01 0.00 2.90
885 956 5.244178 ACAAACTTGTTGGAAAACCTGTACA 59.756 36.000 0.00 0.00 38.47 2.90
886 957 6.071051 ACAAACTTGTTGGAAAACCTGTACAT 60.071 34.615 0.00 0.00 38.47 2.29
888 959 5.901552 ACTTGTTGGAAAACCTGTACATTG 58.098 37.500 0.00 0.00 0.00 2.82
925 1000 2.115427 TGCACCCTATAAGTAGCAGCA 58.885 47.619 0.00 0.00 0.00 4.41
930 1005 2.037772 CCCTATAAGTAGCAGCACCAGG 59.962 54.545 0.00 0.00 0.00 4.45
944 1019 2.187958 CACCAGGTATCTCTCCCACAA 58.812 52.381 0.00 0.00 0.00 3.33
973 1048 3.438017 CTGCCAGAGCTAGCCGGTC 62.438 68.421 12.13 2.27 40.80 4.79
981 1056 2.125512 CTAGCCGGTCCTGCACAC 60.126 66.667 8.11 0.00 0.00 3.82
982 1057 3.665675 CTAGCCGGTCCTGCACACC 62.666 68.421 8.11 0.43 0.00 4.16
988 1063 1.219393 GGTCCTGCACACCTCTAGC 59.781 63.158 3.16 0.00 0.00 3.42
989 1064 1.544825 GGTCCTGCACACCTCTAGCA 61.545 60.000 3.16 0.00 36.72 3.49
993 1068 3.057749 TGCACACCTCTAGCAGACT 57.942 52.632 0.00 0.00 33.75 3.24
994 1069 2.215942 TGCACACCTCTAGCAGACTA 57.784 50.000 0.00 0.00 33.75 2.59
995 1070 2.095461 TGCACACCTCTAGCAGACTAG 58.905 52.381 0.00 0.00 46.30 2.57
1008 1083 1.342819 CAGACTAGCACTATGGCTCCC 59.657 57.143 0.00 0.00 44.54 4.30
1115 1190 1.072331 GTCCAAGGAAGAGCACCAGAA 59.928 52.381 0.00 0.00 0.00 3.02
1116 1191 1.988107 TCCAAGGAAGAGCACCAGAAT 59.012 47.619 0.00 0.00 0.00 2.40
1128 1203 0.700564 ACCAGAATGAGGTGCCACAT 59.299 50.000 0.00 0.00 39.69 3.21
1151 1226 1.203313 TCCCAAGGTAGAGCTTCCACT 60.203 52.381 0.00 0.00 0.00 4.00
1161 1236 1.376037 GCTTCCACTGTTCCCGGAG 60.376 63.158 0.73 0.00 0.00 4.63
1438 3858 1.685224 GAGATGCCCACTGTTCCCA 59.315 57.895 0.00 0.00 0.00 4.37
1559 3980 2.543848 TGCGTCAACAGTCTGATTGTTC 59.456 45.455 14.64 5.73 36.67 3.18
1660 5450 9.605275 TTAGAGATTTCAAATGGACTATCACAG 57.395 33.333 0.00 0.00 0.00 3.66
1661 5451 7.855375 AGAGATTTCAAATGGACTATCACAGA 58.145 34.615 0.00 0.00 0.00 3.41
1662 5452 7.768120 AGAGATTTCAAATGGACTATCACAGAC 59.232 37.037 0.00 0.00 0.00 3.51
1663 5453 6.536582 AGATTTCAAATGGACTATCACAGACG 59.463 38.462 0.00 0.00 0.00 4.18
1664 5454 4.123497 TCAAATGGACTATCACAGACGG 57.877 45.455 0.00 0.00 0.00 4.79
1665 5455 3.767131 TCAAATGGACTATCACAGACGGA 59.233 43.478 0.00 0.00 0.00 4.69
1666 5456 4.405680 TCAAATGGACTATCACAGACGGAT 59.594 41.667 0.00 0.00 0.00 4.18
1667 5457 4.327982 AATGGACTATCACAGACGGATG 57.672 45.455 0.00 0.00 0.00 3.51
1668 5458 2.735151 TGGACTATCACAGACGGATGT 58.265 47.619 0.00 0.00 0.00 3.06
1669 5459 3.893521 TGGACTATCACAGACGGATGTA 58.106 45.455 0.00 0.00 0.00 2.29
1670 5460 4.470602 TGGACTATCACAGACGGATGTAT 58.529 43.478 0.00 0.00 0.00 2.29
1671 5461 4.278419 TGGACTATCACAGACGGATGTATG 59.722 45.833 0.00 0.00 42.97 2.39
1709 7235 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1710 7236 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1711 7237 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1712 7238 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1714 7240 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1720 7246 6.257849 TCACTCATTTTGCTCCGTATGTAATC 59.742 38.462 0.00 0.00 0.00 1.75
1721 7247 6.037062 CACTCATTTTGCTCCGTATGTAATCA 59.963 38.462 0.00 0.00 0.00 2.57
1723 7249 7.283127 ACTCATTTTGCTCCGTATGTAATCATT 59.717 33.333 0.00 0.00 35.70 2.57
1724 7250 7.995289 TCATTTTGCTCCGTATGTAATCATTT 58.005 30.769 0.00 0.00 35.70 2.32
1725 7251 9.114952 TCATTTTGCTCCGTATGTAATCATTTA 57.885 29.630 0.00 0.00 35.70 1.40
1726 7252 9.897744 CATTTTGCTCCGTATGTAATCATTTAT 57.102 29.630 0.00 0.00 35.70 1.40
1728 7254 9.729023 TTTTGCTCCGTATGTAATCATTTATTG 57.271 29.630 0.00 0.00 35.70 1.90
1730 7256 8.669946 TGCTCCGTATGTAATCATTTATTGAA 57.330 30.769 0.00 0.00 38.03 2.69
1767 7293 9.547279 AGACAAATATTTAAAAATGGAGGGAGT 57.453 29.630 0.00 0.00 0.00 3.85
1824 7591 7.016153 TCACTGTCCACCTTTTATCATAAGT 57.984 36.000 0.00 0.00 0.00 2.24
1886 7657 0.994263 GCATGATTTGTTTGCGCCTC 59.006 50.000 4.18 0.00 0.00 4.70
1921 8948 6.380095 TTGACAAAACGTAAAAGCCTACAT 57.620 33.333 0.00 0.00 0.00 2.29
1966 8993 4.380655 CGTGCTACTCCTAGCTTTAACACT 60.381 45.833 0.00 0.00 45.20 3.55
1988 9015 1.939934 GCTATTTATGGCTCACGCACA 59.060 47.619 0.00 0.00 38.10 4.57
1989 9016 2.286418 GCTATTTATGGCTCACGCACAC 60.286 50.000 0.00 0.00 38.10 3.82
2078 9550 3.588955 TGATTGACATCGAGTGAACCAG 58.411 45.455 0.00 0.00 31.08 4.00
2085 9557 2.358737 GAGTGAACCAGGGTGGCG 60.359 66.667 0.00 0.00 42.67 5.69
2086 9558 3.168528 AGTGAACCAGGGTGGCGT 61.169 61.111 0.00 0.00 42.67 5.68
2087 9559 2.203294 GTGAACCAGGGTGGCGTT 60.203 61.111 0.00 0.00 42.67 4.84
2088 9560 2.203280 TGAACCAGGGTGGCGTTG 60.203 61.111 0.00 0.00 42.67 4.10
2089 9561 2.112297 GAACCAGGGTGGCGTTGA 59.888 61.111 0.00 0.00 42.67 3.18
2091 9563 1.586154 GAACCAGGGTGGCGTTGATG 61.586 60.000 0.00 0.00 42.67 3.07
2094 9566 1.308069 CCAGGGTGGCGTTGATGAAG 61.308 60.000 0.00 0.00 0.00 3.02
2097 9586 1.303317 GGTGGCGTTGATGAAGGGT 60.303 57.895 0.00 0.00 0.00 4.34
2149 9638 1.313812 TTGCGGTGTTTGGTTCGGTT 61.314 50.000 0.00 0.00 0.00 4.44
2152 9641 1.096386 CGGTGTTTGGTTCGGTTGGA 61.096 55.000 0.00 0.00 0.00 3.53
2161 9650 5.379732 TTGGTTCGGTTGGAAAATATGTC 57.620 39.130 0.00 0.00 36.14 3.06
2185 9674 6.014669 TCCCAATTTGTTCTTTTGTAGGATGG 60.015 38.462 0.00 0.00 0.00 3.51
2188 9677 8.096414 CCAATTTGTTCTTTTGTAGGATGGAAT 58.904 33.333 0.00 0.00 0.00 3.01
2231 9720 8.904099 AAAGACAAATAATAATACTCCCTCCG 57.096 34.615 0.00 0.00 0.00 4.63
2232 9721 7.613551 AGACAAATAATAATACTCCCTCCGT 57.386 36.000 0.00 0.00 0.00 4.69
2233 9722 8.030913 AGACAAATAATAATACTCCCTCCGTT 57.969 34.615 0.00 0.00 0.00 4.44
2234 9723 8.491958 AGACAAATAATAATACTCCCTCCGTTT 58.508 33.333 0.00 0.00 0.00 3.60
2235 9724 8.672823 ACAAATAATAATACTCCCTCCGTTTC 57.327 34.615 0.00 0.00 0.00 2.78
2236 9725 8.491958 ACAAATAATAATACTCCCTCCGTTTCT 58.508 33.333 0.00 0.00 0.00 2.52
2237 9726 9.991906 CAAATAATAATACTCCCTCCGTTTCTA 57.008 33.333 0.00 0.00 0.00 2.10
2245 9734 8.904099 ATACTCCCTCCGTTTCTAAATATTTG 57.096 34.615 11.05 1.65 0.00 2.32
2246 9735 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
2247 9736 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
2248 9737 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
2249 9738 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
2250 9739 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
2251 9740 8.182227 CCCTCCGTTTCTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
2252 9741 8.947115 CCTCCGTTTCTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
2276 9765 9.909644 TCTAGAGATTTTAACAAGTGACTACAC 57.090 33.333 0.00 0.00 46.24 2.90
2290 9779 5.802064 GTGACTACACACGAAACAAAATGA 58.198 37.500 0.00 0.00 45.32 2.57
2291 9780 5.901884 GTGACTACACACGAAACAAAATGAG 59.098 40.000 0.00 0.00 45.32 2.90
2292 9781 5.583061 TGACTACACACGAAACAAAATGAGT 59.417 36.000 0.00 0.00 0.00 3.41
2293 9782 5.806286 ACTACACACGAAACAAAATGAGTG 58.194 37.500 0.00 0.00 35.89 3.51
2294 9783 4.955925 ACACACGAAACAAAATGAGTGA 57.044 36.364 0.00 0.00 34.16 3.41
2295 9784 5.303747 ACACACGAAACAAAATGAGTGAA 57.696 34.783 0.00 0.00 34.16 3.18
2296 9785 5.890334 ACACACGAAACAAAATGAGTGAAT 58.110 33.333 0.00 0.00 34.16 2.57
2297 9786 5.971202 ACACACGAAACAAAATGAGTGAATC 59.029 36.000 0.00 0.00 34.16 2.52
2298 9787 6.183360 ACACACGAAACAAAATGAGTGAATCT 60.183 34.615 0.00 0.00 34.16 2.40
2299 9788 7.011950 ACACACGAAACAAAATGAGTGAATCTA 59.988 33.333 0.00 0.00 34.16 1.98
2300 9789 7.321271 CACACGAAACAAAATGAGTGAATCTAC 59.679 37.037 0.00 0.00 34.16 2.59
2301 9790 7.011950 ACACGAAACAAAATGAGTGAATCTACA 59.988 33.333 0.00 0.00 34.16 2.74
2302 9791 7.321271 CACGAAACAAAATGAGTGAATCTACAC 59.679 37.037 0.00 0.00 40.60 2.90
2322 9811 9.967346 TCTACACTCTAAAATATGTCTACATGC 57.033 33.333 5.85 0.00 37.15 4.06
2323 9812 9.750125 CTACACTCTAAAATATGTCTACATGCA 57.250 33.333 5.85 0.00 37.15 3.96
2325 9814 9.265901 ACACTCTAAAATATGTCTACATGCATC 57.734 33.333 0.00 0.00 37.15 3.91
2326 9815 8.715998 CACTCTAAAATATGTCTACATGCATCC 58.284 37.037 0.00 0.00 37.15 3.51
2327 9816 7.600375 ACTCTAAAATATGTCTACATGCATCCG 59.400 37.037 0.00 0.00 37.15 4.18
2328 9817 7.441836 TCTAAAATATGTCTACATGCATCCGT 58.558 34.615 0.00 0.00 37.15 4.69
2329 9818 8.581578 TCTAAAATATGTCTACATGCATCCGTA 58.418 33.333 0.00 0.00 37.15 4.02
2330 9819 9.371136 CTAAAATATGTCTACATGCATCCGTAT 57.629 33.333 0.00 0.00 37.15 3.06
2331 9820 7.601073 AAATATGTCTACATGCATCCGTATG 57.399 36.000 0.00 0.00 40.73 2.39
2333 9822 4.400529 TGTCTACATGCATCCGTATGTT 57.599 40.909 0.00 0.00 44.98 2.71
2334 9823 4.119136 TGTCTACATGCATCCGTATGTTG 58.881 43.478 0.00 0.85 44.98 3.33
2335 9824 4.119862 GTCTACATGCATCCGTATGTTGT 58.880 43.478 0.00 0.00 44.98 3.32
2336 9825 4.025730 GTCTACATGCATCCGTATGTTGTG 60.026 45.833 0.00 0.35 44.98 3.33
2337 9826 2.710377 ACATGCATCCGTATGTTGTGT 58.290 42.857 0.00 0.00 44.98 3.72
2338 9827 2.677836 ACATGCATCCGTATGTTGTGTC 59.322 45.455 0.00 0.00 44.98 3.67
2339 9828 1.732941 TGCATCCGTATGTTGTGTCC 58.267 50.000 0.00 0.00 35.38 4.02
2340 9829 1.002544 TGCATCCGTATGTTGTGTCCA 59.997 47.619 0.00 0.00 35.38 4.02
2341 9830 2.288666 GCATCCGTATGTTGTGTCCAT 58.711 47.619 0.00 0.00 35.38 3.41
2342 9831 2.682856 GCATCCGTATGTTGTGTCCATT 59.317 45.455 0.00 0.00 35.38 3.16
2343 9832 3.128589 GCATCCGTATGTTGTGTCCATTT 59.871 43.478 0.00 0.00 35.38 2.32
2344 9833 4.334203 GCATCCGTATGTTGTGTCCATTTA 59.666 41.667 0.00 0.00 35.38 1.40
2345 9834 5.163703 GCATCCGTATGTTGTGTCCATTTAA 60.164 40.000 0.00 0.00 35.38 1.52
2346 9835 6.623986 GCATCCGTATGTTGTGTCCATTTAAA 60.624 38.462 0.00 0.00 35.38 1.52
2347 9836 6.879276 TCCGTATGTTGTGTCCATTTAAAA 57.121 33.333 0.00 0.00 0.00 1.52
2348 9837 7.455641 TCCGTATGTTGTGTCCATTTAAAAT 57.544 32.000 0.00 0.00 0.00 1.82
2349 9838 7.309177 TCCGTATGTTGTGTCCATTTAAAATG 58.691 34.615 0.00 0.00 0.00 2.32
2350 9839 6.034470 CCGTATGTTGTGTCCATTTAAAATGC 59.966 38.462 0.00 0.00 0.00 3.56
2351 9840 6.034470 CGTATGTTGTGTCCATTTAAAATGCC 59.966 38.462 0.00 0.00 0.00 4.40
2352 9841 5.543507 TGTTGTGTCCATTTAAAATGCCT 57.456 34.783 0.00 0.00 0.00 4.75
2353 9842 6.656632 TGTTGTGTCCATTTAAAATGCCTA 57.343 33.333 0.00 0.00 0.00 3.93
2354 9843 6.686630 TGTTGTGTCCATTTAAAATGCCTAG 58.313 36.000 0.00 0.00 0.00 3.02
2355 9844 6.491745 TGTTGTGTCCATTTAAAATGCCTAGA 59.508 34.615 0.00 0.00 0.00 2.43
2356 9845 7.014711 TGTTGTGTCCATTTAAAATGCCTAGAA 59.985 33.333 0.00 0.00 0.00 2.10
2357 9846 7.531857 TGTGTCCATTTAAAATGCCTAGAAA 57.468 32.000 0.00 0.00 0.00 2.52
2358 9847 7.601856 TGTGTCCATTTAAAATGCCTAGAAAG 58.398 34.615 0.00 0.00 0.00 2.62
2359 9848 7.450014 TGTGTCCATTTAAAATGCCTAGAAAGA 59.550 33.333 0.00 0.00 0.00 2.52
2360 9849 7.755373 GTGTCCATTTAAAATGCCTAGAAAGAC 59.245 37.037 0.00 0.00 0.00 3.01
2361 9850 7.450014 TGTCCATTTAAAATGCCTAGAAAGACA 59.550 33.333 0.00 0.00 0.00 3.41
2362 9851 8.303876 GTCCATTTAAAATGCCTAGAAAGACAA 58.696 33.333 0.00 0.00 0.00 3.18
2363 9852 8.865090 TCCATTTAAAATGCCTAGAAAGACAAA 58.135 29.630 0.00 0.00 0.00 2.83
2364 9853 9.657419 CCATTTAAAATGCCTAGAAAGACAAAT 57.343 29.630 0.00 0.00 0.00 2.32
2370 9859 9.657419 AAAATGCCTAGAAAGACAAATATTTGG 57.343 29.630 27.43 12.85 42.34 3.28
2371 9860 6.773976 TGCCTAGAAAGACAAATATTTGGG 57.226 37.500 27.43 18.18 42.34 4.12
2372 9861 6.489603 TGCCTAGAAAGACAAATATTTGGGA 58.510 36.000 27.43 8.88 42.34 4.37
2373 9862 6.951198 TGCCTAGAAAGACAAATATTTGGGAA 59.049 34.615 27.43 11.57 42.34 3.97
2374 9863 7.093945 TGCCTAGAAAGACAAATATTTGGGAAC 60.094 37.037 27.43 16.80 42.34 3.62
2375 9864 7.472543 CCTAGAAAGACAAATATTTGGGAACG 58.527 38.462 27.43 6.31 42.34 3.95
2376 9865 6.267496 AGAAAGACAAATATTTGGGAACGG 57.733 37.500 27.43 5.66 42.34 4.44
2377 9866 6.007703 AGAAAGACAAATATTTGGGAACGGA 58.992 36.000 27.43 0.00 42.34 4.69
2378 9867 5.897377 AAGACAAATATTTGGGAACGGAG 57.103 39.130 27.43 4.34 42.34 4.63
2379 9868 4.270008 AGACAAATATTTGGGAACGGAGG 58.730 43.478 27.43 3.68 42.34 4.30
2380 9869 4.018779 AGACAAATATTTGGGAACGGAGGA 60.019 41.667 27.43 0.00 42.34 3.71
2381 9870 4.668636 ACAAATATTTGGGAACGGAGGAA 58.331 39.130 27.43 0.00 42.34 3.36
2382 9871 4.705023 ACAAATATTTGGGAACGGAGGAAG 59.295 41.667 27.43 2.64 42.34 3.46
2383 9872 4.586306 AATATTTGGGAACGGAGGAAGT 57.414 40.909 0.00 0.00 0.00 3.01
2384 9873 5.703730 AATATTTGGGAACGGAGGAAGTA 57.296 39.130 0.00 0.00 0.00 2.24
2385 9874 3.629142 ATTTGGGAACGGAGGAAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
2386 9875 2.019807 TTGGGAACGGAGGAAGTAGT 57.980 50.000 0.00 0.00 0.00 2.73
2387 9876 2.905415 TGGGAACGGAGGAAGTAGTA 57.095 50.000 0.00 0.00 0.00 1.82
2388 9877 2.450476 TGGGAACGGAGGAAGTAGTAC 58.550 52.381 0.00 0.00 0.00 2.73
2389 9878 2.225091 TGGGAACGGAGGAAGTAGTACA 60.225 50.000 2.52 0.00 0.00 2.90
2390 9879 2.827921 GGGAACGGAGGAAGTAGTACAA 59.172 50.000 2.52 0.00 0.00 2.41
2391 9880 3.259123 GGGAACGGAGGAAGTAGTACAAA 59.741 47.826 2.52 0.00 0.00 2.83
2392 9881 4.262592 GGGAACGGAGGAAGTAGTACAAAA 60.263 45.833 2.52 0.00 0.00 2.44
2393 9882 4.687948 GGAACGGAGGAAGTAGTACAAAAC 59.312 45.833 2.52 0.00 0.00 2.43
2394 9883 4.942761 ACGGAGGAAGTAGTACAAAACA 57.057 40.909 2.52 0.00 0.00 2.83
2395 9884 4.625028 ACGGAGGAAGTAGTACAAAACAC 58.375 43.478 2.52 0.00 0.00 3.32
2396 9885 4.099881 ACGGAGGAAGTAGTACAAAACACA 59.900 41.667 2.52 0.00 0.00 3.72
2397 9886 5.051816 CGGAGGAAGTAGTACAAAACACAA 58.948 41.667 2.52 0.00 0.00 3.33
2398 9887 5.050567 CGGAGGAAGTAGTACAAAACACAAC 60.051 44.000 2.52 0.00 0.00 3.32
2399 9888 6.053650 GGAGGAAGTAGTACAAAACACAACT 58.946 40.000 2.52 0.00 0.00 3.16
2400 9889 7.212274 GGAGGAAGTAGTACAAAACACAACTA 58.788 38.462 2.52 0.00 0.00 2.24
2401 9890 7.876582 GGAGGAAGTAGTACAAAACACAACTAT 59.123 37.037 2.52 0.00 0.00 2.12
2402 9891 9.918630 GAGGAAGTAGTACAAAACACAACTATA 57.081 33.333 2.52 0.00 0.00 1.31
2403 9892 9.702494 AGGAAGTAGTACAAAACACAACTATAC 57.298 33.333 2.52 0.00 0.00 1.47
2404 9893 8.929746 GGAAGTAGTACAAAACACAACTATACC 58.070 37.037 2.52 0.00 0.00 2.73
2405 9894 9.480053 GAAGTAGTACAAAACACAACTATACCA 57.520 33.333 2.52 0.00 0.00 3.25
2406 9895 9.835389 AAGTAGTACAAAACACAACTATACCAA 57.165 29.630 2.52 0.00 0.00 3.67
2407 9896 9.264719 AGTAGTACAAAACACAACTATACCAAC 57.735 33.333 2.52 0.00 0.00 3.77
2408 9897 9.044150 GTAGTACAAAACACAACTATACCAACA 57.956 33.333 0.00 0.00 0.00 3.33
2409 9898 8.685838 AGTACAAAACACAACTATACCAACAT 57.314 30.769 0.00 0.00 0.00 2.71
2410 9899 9.127277 AGTACAAAACACAACTATACCAACATT 57.873 29.630 0.00 0.00 0.00 2.71
2413 9902 8.354426 ACAAAACACAACTATACCAACATTACC 58.646 33.333 0.00 0.00 0.00 2.85
2414 9903 6.730960 AACACAACTATACCAACATTACCG 57.269 37.500 0.00 0.00 0.00 4.02
2415 9904 6.040209 ACACAACTATACCAACATTACCGA 57.960 37.500 0.00 0.00 0.00 4.69
2416 9905 6.103997 ACACAACTATACCAACATTACCGAG 58.896 40.000 0.00 0.00 0.00 4.63
2417 9906 6.103997 CACAACTATACCAACATTACCGAGT 58.896 40.000 0.00 0.00 0.00 4.18
2418 9907 6.035650 CACAACTATACCAACATTACCGAGTG 59.964 42.308 0.00 0.00 0.00 3.51
2419 9908 4.690122 ACTATACCAACATTACCGAGTGC 58.310 43.478 0.00 0.00 0.00 4.40
2420 9909 2.389962 TACCAACATTACCGAGTGCC 57.610 50.000 0.00 0.00 0.00 5.01
2421 9910 0.322187 ACCAACATTACCGAGTGCCC 60.322 55.000 0.00 0.00 0.00 5.36
2422 9911 0.035439 CCAACATTACCGAGTGCCCT 60.035 55.000 0.00 0.00 0.00 5.19
2423 9912 1.208535 CCAACATTACCGAGTGCCCTA 59.791 52.381 0.00 0.00 0.00 3.53
2424 9913 2.277084 CAACATTACCGAGTGCCCTAC 58.723 52.381 0.00 0.00 0.00 3.18
2425 9914 1.861982 ACATTACCGAGTGCCCTACT 58.138 50.000 0.00 0.00 44.02 2.57
2434 9923 2.559381 AGTGCCCTACTCTCCTGAAT 57.441 50.000 0.00 0.00 33.17 2.57
2435 9924 3.689872 AGTGCCCTACTCTCCTGAATA 57.310 47.619 0.00 0.00 33.17 1.75
2436 9925 4.206244 AGTGCCCTACTCTCCTGAATAT 57.794 45.455 0.00 0.00 33.17 1.28
2437 9926 4.561752 AGTGCCCTACTCTCCTGAATATT 58.438 43.478 0.00 0.00 33.17 1.28
2438 9927 4.346418 AGTGCCCTACTCTCCTGAATATTG 59.654 45.833 0.00 0.00 33.17 1.90
2439 9928 4.345257 GTGCCCTACTCTCCTGAATATTGA 59.655 45.833 0.00 0.00 0.00 2.57
2440 9929 4.345257 TGCCCTACTCTCCTGAATATTGAC 59.655 45.833 0.00 0.00 0.00 3.18
2441 9930 4.591072 GCCCTACTCTCCTGAATATTGACT 59.409 45.833 0.00 0.00 0.00 3.41
2442 9931 5.510520 GCCCTACTCTCCTGAATATTGACTG 60.511 48.000 0.00 0.00 0.00 3.51
2443 9932 5.835819 CCCTACTCTCCTGAATATTGACTGA 59.164 44.000 0.00 0.00 0.00 3.41
2444 9933 6.015519 CCCTACTCTCCTGAATATTGACTGAG 60.016 46.154 0.00 0.00 0.00 3.35
2445 9934 6.775142 CCTACTCTCCTGAATATTGACTGAGA 59.225 42.308 0.00 0.00 0.00 3.27
2446 9935 7.451255 CCTACTCTCCTGAATATTGACTGAGAT 59.549 40.741 0.00 0.00 0.00 2.75
2447 9936 7.053316 ACTCTCCTGAATATTGACTGAGATG 57.947 40.000 0.00 0.00 0.00 2.90
2448 9937 5.851720 TCTCCTGAATATTGACTGAGATGC 58.148 41.667 0.00 0.00 0.00 3.91
2449 9938 5.364735 TCTCCTGAATATTGACTGAGATGCA 59.635 40.000 0.00 0.00 0.00 3.96
2450 9939 5.363101 TCCTGAATATTGACTGAGATGCAC 58.637 41.667 0.00 0.00 0.00 4.57
2451 9940 5.104817 TCCTGAATATTGACTGAGATGCACA 60.105 40.000 0.00 0.00 0.00 4.57
2452 9941 5.007430 CCTGAATATTGACTGAGATGCACAC 59.993 44.000 0.00 0.00 0.00 3.82
2453 9942 5.737860 TGAATATTGACTGAGATGCACACT 58.262 37.500 0.00 0.00 0.00 3.55
2454 9943 5.583457 TGAATATTGACTGAGATGCACACTG 59.417 40.000 0.00 0.00 0.00 3.66
2455 9944 2.174363 TTGACTGAGATGCACACTGG 57.826 50.000 0.00 0.00 0.00 4.00
2456 9945 0.321034 TGACTGAGATGCACACTGGC 60.321 55.000 0.00 0.00 0.00 4.85
2471 9960 3.796764 TGGCACAGTGAACACATCA 57.203 47.368 4.15 0.00 35.05 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.797546 GCTGCAGTGAAGCTCCGC 61.798 66.667 16.52 0.00 37.69 5.54
23 24 3.485431 CGCTGCAGTGAAGCTCCG 61.485 66.667 22.94 6.57 38.57 4.63
25 26 1.080230 TCTCGCTGCAGTGAAGCTC 60.080 57.895 28.59 3.30 38.57 4.09
78 79 4.096003 CGGAGCACCCCCATCGTT 62.096 66.667 0.00 0.00 0.00 3.85
272 281 0.179189 CCAGCAGAAATTTCGTCGCC 60.179 55.000 19.90 7.30 0.00 5.54
342 355 4.855715 TCTCTCGTCATGGGATACAATC 57.144 45.455 0.00 0.00 39.74 2.67
343 356 5.614324 TTTCTCTCGTCATGGGATACAAT 57.386 39.130 0.00 0.00 39.74 2.71
392 410 2.103263 CCCAACCTTATCTTCTCCCTCG 59.897 54.545 0.00 0.00 0.00 4.63
423 442 3.884774 GTGCAGGTCCACCCACCA 61.885 66.667 0.00 0.00 39.16 4.17
477 505 4.306600 GAAAATGTTCAAAATCAGCCGGT 58.693 39.130 1.90 0.00 33.61 5.28
490 518 8.718734 ACAGACGTATTTTAGAGGAAAATGTTC 58.281 33.333 5.69 0.00 45.44 3.18
571 599 9.920946 AATATTGCTACTTCCTCCATTCTTAAA 57.079 29.630 0.00 0.00 0.00 1.52
572 600 9.920946 AAATATTGCTACTTCCTCCATTCTTAA 57.079 29.630 0.00 0.00 0.00 1.85
573 601 9.342308 CAAATATTGCTACTTCCTCCATTCTTA 57.658 33.333 0.00 0.00 0.00 2.10
574 602 8.055181 TCAAATATTGCTACTTCCTCCATTCTT 58.945 33.333 0.00 0.00 0.00 2.52
575 603 7.577303 TCAAATATTGCTACTTCCTCCATTCT 58.423 34.615 0.00 0.00 0.00 2.40
576 604 7.807977 TCAAATATTGCTACTTCCTCCATTC 57.192 36.000 0.00 0.00 0.00 2.67
577 605 8.773033 AATCAAATATTGCTACTTCCTCCATT 57.227 30.769 0.00 0.00 0.00 3.16
578 606 8.000709 TGAATCAAATATTGCTACTTCCTCCAT 58.999 33.333 0.00 0.00 0.00 3.41
579 607 7.345691 TGAATCAAATATTGCTACTTCCTCCA 58.654 34.615 0.00 0.00 0.00 3.86
580 608 7.807977 TGAATCAAATATTGCTACTTCCTCC 57.192 36.000 0.00 0.00 0.00 4.30
602 630 9.905713 AGGCTAACAATTAACTCAGAATTATGA 57.094 29.630 2.26 2.26 0.00 2.15
603 631 9.941664 CAGGCTAACAATTAACTCAGAATTATG 57.058 33.333 0.00 0.00 0.00 1.90
604 632 9.686683 ACAGGCTAACAATTAACTCAGAATTAT 57.313 29.630 0.00 0.00 0.00 1.28
605 633 9.515226 AACAGGCTAACAATTAACTCAGAATTA 57.485 29.630 0.00 0.00 0.00 1.40
606 634 8.409358 AACAGGCTAACAATTAACTCAGAATT 57.591 30.769 0.00 0.00 0.00 2.17
611 639 8.685838 AGTTTAACAGGCTAACAATTAACTCA 57.314 30.769 0.00 0.00 0.00 3.41
637 665 0.824109 CCAGAGCCATACGAACCTGA 59.176 55.000 0.00 0.00 0.00 3.86
642 670 2.192664 TTTTGCCAGAGCCATACGAA 57.807 45.000 0.00 0.00 38.69 3.85
644 672 3.181397 CAATTTTTGCCAGAGCCATACG 58.819 45.455 0.00 0.00 38.69 3.06
647 675 3.181452 ACAACAATTTTTGCCAGAGCCAT 60.181 39.130 4.23 0.00 38.69 4.40
649 677 2.837498 ACAACAATTTTTGCCAGAGCC 58.163 42.857 4.23 0.00 38.69 4.70
654 682 7.148188 TGCTGAAATAAACAACAATTTTTGCCA 60.148 29.630 4.23 0.00 0.00 4.92
663 691 7.432869 ACAAGCTATGCTGAAATAAACAACAA 58.567 30.769 0.00 0.00 39.62 2.83
668 696 8.298030 ACAAAACAAGCTATGCTGAAATAAAC 57.702 30.769 0.00 0.00 39.62 2.01
673 702 5.900425 TGAACAAAACAAGCTATGCTGAAA 58.100 33.333 0.00 0.00 39.62 2.69
676 705 5.042593 TGTTGAACAAAACAAGCTATGCTG 58.957 37.500 0.00 0.00 39.62 4.41
677 706 5.043248 GTGTTGAACAAAACAAGCTATGCT 58.957 37.500 0.00 0.00 41.52 3.79
682 711 4.021544 TCCAAGTGTTGAACAAAACAAGCT 60.022 37.500 0.00 0.00 41.52 3.74
695 724 3.790820 CGAAACATTGTGTCCAAGTGTTG 59.209 43.478 1.31 0.00 34.98 3.33
699 728 3.541632 AGACGAAACATTGTGTCCAAGT 58.458 40.909 1.31 0.00 33.17 3.16
708 737 3.248363 TCAGCTGTGAAGACGAAACATTG 59.752 43.478 14.67 0.00 0.00 2.82
711 740 2.201732 GTCAGCTGTGAAGACGAAACA 58.798 47.619 14.67 0.00 33.27 2.83
746 775 2.029828 GGCAGGTATGATCGTACAGGAG 60.030 54.545 23.27 12.22 0.00 3.69
748 777 1.000955 GGGCAGGTATGATCGTACAGG 59.999 57.143 23.27 16.06 0.00 4.00
749 778 1.964223 AGGGCAGGTATGATCGTACAG 59.036 52.381 23.27 16.62 0.00 2.74
752 781 0.679505 GCAGGGCAGGTATGATCGTA 59.320 55.000 0.00 0.00 0.00 3.43
756 785 1.146930 CGTGCAGGGCAGGTATGAT 59.853 57.895 0.00 0.00 40.08 2.45
817 888 2.869801 GTCGGATGTGTGTGTTTCTGAA 59.130 45.455 0.00 0.00 0.00 3.02
829 900 1.073964 CTGCAGTTCTGTCGGATGTG 58.926 55.000 5.25 0.00 0.00 3.21
834 905 3.238108 ACTTATCTGCAGTTCTGTCGG 57.762 47.619 14.67 0.29 0.00 4.79
835 906 5.236655 TCTACTTATCTGCAGTTCTGTCG 57.763 43.478 14.67 5.86 0.00 4.35
843 914 7.840342 AGTTTGTTCATCTACTTATCTGCAG 57.160 36.000 7.63 7.63 0.00 4.41
878 949 1.024579 GCGTGGGGACAATGTACAGG 61.025 60.000 0.33 0.00 46.06 4.00
885 956 2.713531 AAAGGCAGCGTGGGGACAAT 62.714 55.000 0.00 0.00 46.06 2.71
886 957 2.920076 AAAAGGCAGCGTGGGGACAA 62.920 55.000 0.00 0.00 46.06 3.18
888 959 2.597510 AAAAGGCAGCGTGGGGAC 60.598 61.111 0.00 0.00 0.00 4.46
925 1000 2.642171 TTGTGGGAGAGATACCTGGT 57.358 50.000 4.05 4.05 0.00 4.00
930 1005 4.333926 GCAGTTTGATTGTGGGAGAGATAC 59.666 45.833 0.00 0.00 0.00 2.24
944 1019 1.531423 CTCTGGCAGTGCAGTTTGAT 58.469 50.000 18.61 0.00 0.00 2.57
981 1056 3.505680 CCATAGTGCTAGTCTGCTAGAGG 59.494 52.174 5.89 0.00 45.77 3.69
982 1057 3.057596 GCCATAGTGCTAGTCTGCTAGAG 60.058 52.174 5.89 0.00 45.77 2.43
988 1063 1.342819 GGGAGCCATAGTGCTAGTCTG 59.657 57.143 0.00 0.00 42.95 3.51
989 1064 1.062886 TGGGAGCCATAGTGCTAGTCT 60.063 52.381 0.00 0.00 42.95 3.24
990 1065 1.414158 TGGGAGCCATAGTGCTAGTC 58.586 55.000 0.00 0.00 42.95 2.59
991 1066 1.879575 TTGGGAGCCATAGTGCTAGT 58.120 50.000 0.00 0.00 42.95 2.57
992 1067 3.281727 TTTTGGGAGCCATAGTGCTAG 57.718 47.619 0.00 0.00 42.95 3.42
993 1068 3.010138 AGTTTTTGGGAGCCATAGTGCTA 59.990 43.478 0.00 0.00 42.95 3.49
994 1069 2.171003 GTTTTTGGGAGCCATAGTGCT 58.829 47.619 0.00 0.00 46.37 4.40
995 1070 2.164422 GAGTTTTTGGGAGCCATAGTGC 59.836 50.000 0.00 0.00 31.53 4.40
1008 1083 3.251972 GGAGGAAGACAGCTGAGTTTTTG 59.748 47.826 23.35 0.00 0.00 2.44
1063 1138 0.036388 TCAAGGATTCTCGCCACACC 60.036 55.000 0.00 0.00 0.00 4.16
1067 1142 0.826715 CTCCTCAAGGATTCTCGCCA 59.173 55.000 0.00 0.00 44.46 5.69
1115 1190 1.852309 TGGGAATATGTGGCACCTCAT 59.148 47.619 16.26 9.07 34.92 2.90
1116 1191 1.294041 TGGGAATATGTGGCACCTCA 58.706 50.000 16.26 1.79 0.00 3.86
1128 1203 3.454812 GTGGAAGCTCTACCTTGGGAATA 59.545 47.826 0.00 0.00 0.00 1.75
1151 1226 1.156803 AGGTGTACCTCCGGGAACA 59.843 57.895 0.00 0.00 44.77 3.18
1161 1236 0.392595 GCTTAGGTGGCAGGTGTACC 60.393 60.000 0.00 0.00 34.68 3.34
1438 3858 1.632589 GGCTTTGGGAAGTGGAACAT 58.367 50.000 0.00 0.00 44.52 2.71
1480 3901 2.197577 GAGGCGACAGTATTGAGAAGC 58.802 52.381 0.00 0.00 0.00 3.86
1637 5427 7.254252 CGTCTGTGATAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 0.00 2.75
1640 5430 5.586243 CCGTCTGTGATAGTCCATTTGAAAT 59.414 40.000 0.00 0.00 0.00 2.17
1642 5432 4.221924 TCCGTCTGTGATAGTCCATTTGAA 59.778 41.667 0.00 0.00 0.00 2.69
1644 5434 4.123497 TCCGTCTGTGATAGTCCATTTG 57.877 45.455 0.00 0.00 0.00 2.32
1645 5435 4.162320 ACATCCGTCTGTGATAGTCCATTT 59.838 41.667 0.00 0.00 0.00 2.32
1646 5436 3.706594 ACATCCGTCTGTGATAGTCCATT 59.293 43.478 0.00 0.00 0.00 3.16
1648 5438 2.735151 ACATCCGTCTGTGATAGTCCA 58.265 47.619 0.00 0.00 0.00 4.02
1649 5439 4.278669 ACATACATCCGTCTGTGATAGTCC 59.721 45.833 0.00 0.00 31.73 3.85
1650 5440 5.440234 ACATACATCCGTCTGTGATAGTC 57.560 43.478 0.00 0.00 31.73 2.59
1652 5442 6.204882 TGTCTACATACATCCGTCTGTGATAG 59.795 42.308 0.00 0.00 34.56 2.08
1655 5445 4.266714 TGTCTACATACATCCGTCTGTGA 58.733 43.478 0.00 0.00 34.56 3.58
1656 5446 4.632538 TGTCTACATACATCCGTCTGTG 57.367 45.455 0.00 0.00 34.56 3.66
1657 5447 6.954487 TTATGTCTACATACATCCGTCTGT 57.046 37.500 2.30 0.00 40.52 3.41
1658 5448 8.818141 AAATTATGTCTACATACATCCGTCTG 57.182 34.615 2.30 0.00 40.52 3.51
1690 5785 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1694 7220 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
1696 7222 5.794687 TTACATACGGAGCAAAATGAGTG 57.205 39.130 0.00 0.00 0.00 3.51
1698 7224 6.603237 TGATTACATACGGAGCAAAATGAG 57.397 37.500 0.00 0.00 0.00 2.90
1700 7226 9.897744 ATAAATGATTACATACGGAGCAAAATG 57.102 29.630 0.00 0.00 35.50 2.32
1757 7283 9.488762 TCGTATATTCAAATATACTCCCTCCAT 57.511 33.333 21.73 0.00 45.86 3.41
1758 7284 8.888836 TCGTATATTCAAATATACTCCCTCCA 57.111 34.615 21.73 4.08 45.86 3.86
1759 7285 9.186837 TCTCGTATATTCAAATATACTCCCTCC 57.813 37.037 21.73 4.05 45.86 4.30
1824 7591 7.177216 AGGAATCATGCATACTTTTCAAGTGAA 59.823 33.333 0.00 0.00 42.84 3.18
1886 7657 5.288804 ACGTTTTGTCAATGGGAAAATGAG 58.711 37.500 13.17 4.39 32.36 2.90
1988 9015 5.518848 TGATGCAACTCAAAAATGACAGT 57.481 34.783 0.00 0.00 0.00 3.55
1989 9016 5.108141 CGTTGATGCAACTCAAAAATGACAG 60.108 40.000 4.34 0.00 41.62 3.51
2078 9550 2.046285 CCCTTCATCAACGCCACCC 61.046 63.158 0.00 0.00 0.00 4.61
2085 9557 1.586154 CCCGCACACCCTTCATCAAC 61.586 60.000 0.00 0.00 0.00 3.18
2086 9558 1.303236 CCCGCACACCCTTCATCAA 60.303 57.895 0.00 0.00 0.00 2.57
2087 9559 2.220586 TCCCGCACACCCTTCATCA 61.221 57.895 0.00 0.00 0.00 3.07
2088 9560 1.745489 GTCCCGCACACCCTTCATC 60.745 63.158 0.00 0.00 0.00 2.92
2089 9561 2.351276 GTCCCGCACACCCTTCAT 59.649 61.111 0.00 0.00 0.00 2.57
2091 9563 2.764637 AATGGTCCCGCACACCCTTC 62.765 60.000 0.00 0.00 32.24 3.46
2094 9566 1.468506 AAAAATGGTCCCGCACACCC 61.469 55.000 0.00 0.00 32.24 4.61
2114 9603 7.209471 ACACCGCAATTCAGATTAACTTAAA 57.791 32.000 0.00 0.00 0.00 1.52
2115 9604 6.811253 ACACCGCAATTCAGATTAACTTAA 57.189 33.333 0.00 0.00 0.00 1.85
2118 9607 5.460646 CAAACACCGCAATTCAGATTAACT 58.539 37.500 0.00 0.00 0.00 2.24
2126 9615 1.268794 CGAACCAAACACCGCAATTCA 60.269 47.619 0.00 0.00 0.00 2.57
2133 9622 1.096386 TCCAACCGAACCAAACACCG 61.096 55.000 0.00 0.00 0.00 4.94
2149 9638 7.552050 AGAACAAATTGGGACATATTTTCCA 57.448 32.000 0.00 0.00 39.30 3.53
2152 9641 9.625747 ACAAAAGAACAAATTGGGACATATTTT 57.374 25.926 0.00 0.00 39.30 1.82
2161 9650 6.014669 TCCATCCTACAAAAGAACAAATTGGG 60.015 38.462 0.00 0.00 0.00 4.12
2210 9699 8.491958 AGAAACGGAGGGAGTATTATTATTTGT 58.508 33.333 0.00 0.00 0.00 2.83
2211 9700 8.904099 AGAAACGGAGGGAGTATTATTATTTG 57.096 34.615 0.00 0.00 0.00 2.32
2223 9712 7.048512 AGACAAATATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
2224 9713 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
2225 9714 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
2226 9715 8.947115 AGAAAGACAAATATTTAGAAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
2250 9739 9.909644 GTGTAGTCACTTGTTAAAATCTCTAGA 57.090 33.333 0.00 0.00 40.98 2.43
2251 9740 9.692749 TGTGTAGTCACTTGTTAAAATCTCTAG 57.307 33.333 0.00 0.00 44.14 2.43
2252 9741 9.472361 GTGTGTAGTCACTTGTTAAAATCTCTA 57.528 33.333 0.00 0.00 44.14 2.43
2253 9742 7.169308 CGTGTGTAGTCACTTGTTAAAATCTCT 59.831 37.037 0.00 0.00 44.14 3.10
2254 9743 7.168637 TCGTGTGTAGTCACTTGTTAAAATCTC 59.831 37.037 0.00 0.00 44.14 2.75
2255 9744 6.982141 TCGTGTGTAGTCACTTGTTAAAATCT 59.018 34.615 0.00 0.00 44.14 2.40
2256 9745 7.169035 TCGTGTGTAGTCACTTGTTAAAATC 57.831 36.000 0.00 0.00 44.14 2.17
2257 9746 7.542534 TTCGTGTGTAGTCACTTGTTAAAAT 57.457 32.000 0.00 0.00 44.14 1.82
2258 9747 6.964741 TTCGTGTGTAGTCACTTGTTAAAA 57.035 33.333 0.00 0.00 44.14 1.52
2259 9748 6.368243 TGTTTCGTGTGTAGTCACTTGTTAAA 59.632 34.615 0.00 0.00 44.14 1.52
2260 9749 5.868258 TGTTTCGTGTGTAGTCACTTGTTAA 59.132 36.000 0.00 0.00 44.14 2.01
2261 9750 5.409211 TGTTTCGTGTGTAGTCACTTGTTA 58.591 37.500 0.00 0.00 44.14 2.41
2262 9751 4.247258 TGTTTCGTGTGTAGTCACTTGTT 58.753 39.130 0.00 0.00 44.14 2.83
2263 9752 3.852286 TGTTTCGTGTGTAGTCACTTGT 58.148 40.909 0.00 0.00 44.14 3.16
2264 9753 4.850859 TTGTTTCGTGTGTAGTCACTTG 57.149 40.909 0.00 0.00 44.14 3.16
2265 9754 5.866335 TTTTGTTTCGTGTGTAGTCACTT 57.134 34.783 0.00 0.00 44.14 3.16
2266 9755 5.583061 TCATTTTGTTTCGTGTGTAGTCACT 59.417 36.000 0.00 0.00 44.14 3.41
2267 9756 5.802064 TCATTTTGTTTCGTGTGTAGTCAC 58.198 37.500 0.00 0.00 44.08 3.67
2268 9757 5.583061 ACTCATTTTGTTTCGTGTGTAGTCA 59.417 36.000 0.00 0.00 0.00 3.41
2269 9758 5.901884 CACTCATTTTGTTTCGTGTGTAGTC 59.098 40.000 0.00 0.00 0.00 2.59
2270 9759 5.583061 TCACTCATTTTGTTTCGTGTGTAGT 59.417 36.000 0.00 0.00 0.00 2.73
2271 9760 6.043327 TCACTCATTTTGTTTCGTGTGTAG 57.957 37.500 0.00 0.00 0.00 2.74
2272 9761 6.424176 TTCACTCATTTTGTTTCGTGTGTA 57.576 33.333 0.00 0.00 0.00 2.90
2273 9762 4.955925 TCACTCATTTTGTTTCGTGTGT 57.044 36.364 0.00 0.00 0.00 3.72
2274 9763 6.201517 AGATTCACTCATTTTGTTTCGTGTG 58.798 36.000 0.00 0.00 0.00 3.82
2275 9764 6.377327 AGATTCACTCATTTTGTTTCGTGT 57.623 33.333 0.00 0.00 0.00 4.49
2276 9765 7.321271 GTGTAGATTCACTCATTTTGTTTCGTG 59.679 37.037 0.00 0.00 35.68 4.35
2277 9766 7.226720 AGTGTAGATTCACTCATTTTGTTTCGT 59.773 33.333 0.00 0.00 44.07 3.85
2278 9767 7.576236 AGTGTAGATTCACTCATTTTGTTTCG 58.424 34.615 0.00 0.00 44.07 3.46
2296 9785 9.967346 GCATGTAGACATATTTTAGAGTGTAGA 57.033 33.333 0.00 0.00 34.26 2.59
2297 9786 9.750125 TGCATGTAGACATATTTTAGAGTGTAG 57.250 33.333 0.00 0.00 34.26 2.74
2299 9788 9.265901 GATGCATGTAGACATATTTTAGAGTGT 57.734 33.333 2.46 0.00 34.26 3.55
2300 9789 8.715998 GGATGCATGTAGACATATTTTAGAGTG 58.284 37.037 2.46 0.00 34.26 3.51
2301 9790 7.600375 CGGATGCATGTAGACATATTTTAGAGT 59.400 37.037 2.46 0.00 34.26 3.24
2302 9791 7.600375 ACGGATGCATGTAGACATATTTTAGAG 59.400 37.037 2.46 0.00 34.26 2.43
2303 9792 7.441836 ACGGATGCATGTAGACATATTTTAGA 58.558 34.615 2.46 0.00 34.26 2.10
2304 9793 7.658179 ACGGATGCATGTAGACATATTTTAG 57.342 36.000 2.46 0.00 34.26 1.85
2305 9794 9.150348 CATACGGATGCATGTAGACATATTTTA 57.850 33.333 2.46 0.00 34.26 1.52
2306 9795 7.661437 ACATACGGATGCATGTAGACATATTTT 59.339 33.333 7.78 0.00 36.43 1.82
2307 9796 7.161404 ACATACGGATGCATGTAGACATATTT 58.839 34.615 7.78 0.00 36.43 1.40
2308 9797 6.701340 ACATACGGATGCATGTAGACATATT 58.299 36.000 7.78 0.00 36.43 1.28
2309 9798 6.286240 ACATACGGATGCATGTAGACATAT 57.714 37.500 7.78 0.00 36.43 1.78
2310 9799 5.722021 ACATACGGATGCATGTAGACATA 57.278 39.130 7.78 0.00 36.43 2.29
2311 9800 4.607293 ACATACGGATGCATGTAGACAT 57.393 40.909 7.78 0.00 36.43 3.06
2312 9801 4.119136 CAACATACGGATGCATGTAGACA 58.881 43.478 7.78 0.00 36.43 3.41
2313 9802 4.025730 CACAACATACGGATGCATGTAGAC 60.026 45.833 16.73 0.00 35.39 2.59
2314 9803 4.119136 CACAACATACGGATGCATGTAGA 58.881 43.478 16.73 0.00 35.39 2.59
2315 9804 3.871006 ACACAACATACGGATGCATGTAG 59.129 43.478 16.73 13.72 35.39 2.74
2316 9805 3.867857 ACACAACATACGGATGCATGTA 58.132 40.909 16.73 0.83 35.39 2.29
2317 9806 2.677836 GACACAACATACGGATGCATGT 59.322 45.455 7.78 10.69 37.06 3.21
2318 9807 2.032054 GGACACAACATACGGATGCATG 59.968 50.000 7.78 9.99 36.43 4.06
2319 9808 2.288666 GGACACAACATACGGATGCAT 58.711 47.619 7.78 0.00 36.43 3.96
2320 9809 1.002544 TGGACACAACATACGGATGCA 59.997 47.619 7.78 0.00 36.43 3.96
2321 9810 1.732941 TGGACACAACATACGGATGC 58.267 50.000 7.78 0.00 36.43 3.91
2322 9811 4.963276 AAATGGACACAACATACGGATG 57.037 40.909 5.94 5.94 39.16 3.51
2323 9812 7.455641 TTTTAAATGGACACAACATACGGAT 57.544 32.000 0.00 0.00 0.00 4.18
2324 9813 6.879276 TTTTAAATGGACACAACATACGGA 57.121 33.333 0.00 0.00 0.00 4.69
2325 9814 6.034470 GCATTTTAAATGGACACAACATACGG 59.966 38.462 17.89 0.00 0.00 4.02
2326 9815 6.034470 GGCATTTTAAATGGACACAACATACG 59.966 38.462 17.89 0.00 0.00 3.06
2327 9816 7.096551 AGGCATTTTAAATGGACACAACATAC 58.903 34.615 17.89 0.00 0.00 2.39
2328 9817 7.238486 AGGCATTTTAAATGGACACAACATA 57.762 32.000 17.89 0.00 0.00 2.29
2329 9818 6.112927 AGGCATTTTAAATGGACACAACAT 57.887 33.333 17.89 0.00 0.00 2.71
2330 9819 5.543507 AGGCATTTTAAATGGACACAACA 57.456 34.783 17.89 0.00 0.00 3.33
2331 9820 6.919721 TCTAGGCATTTTAAATGGACACAAC 58.080 36.000 17.89 1.13 0.00 3.32
2332 9821 7.531857 TTCTAGGCATTTTAAATGGACACAA 57.468 32.000 17.89 0.00 0.00 3.33
2333 9822 7.450014 TCTTTCTAGGCATTTTAAATGGACACA 59.550 33.333 17.89 0.00 0.00 3.72
2334 9823 7.755373 GTCTTTCTAGGCATTTTAAATGGACAC 59.245 37.037 17.89 2.75 0.00 3.67
2335 9824 7.450014 TGTCTTTCTAGGCATTTTAAATGGACA 59.550 33.333 17.89 15.51 29.10 4.02
2336 9825 7.826690 TGTCTTTCTAGGCATTTTAAATGGAC 58.173 34.615 17.89 13.56 29.10 4.02
2337 9826 8.415950 TTGTCTTTCTAGGCATTTTAAATGGA 57.584 30.769 17.89 5.27 35.56 3.41
2338 9827 9.657419 ATTTGTCTTTCTAGGCATTTTAAATGG 57.343 29.630 17.89 3.11 35.56 3.16
2344 9833 9.657419 CCAAATATTTGTCTTTCTAGGCATTTT 57.343 29.630 23.24 0.00 35.56 1.82
2345 9834 8.260114 CCCAAATATTTGTCTTTCTAGGCATTT 58.740 33.333 23.24 0.00 35.56 2.32
2346 9835 7.619302 TCCCAAATATTTGTCTTTCTAGGCATT 59.381 33.333 23.24 0.00 35.56 3.56
2347 9836 7.125391 TCCCAAATATTTGTCTTTCTAGGCAT 58.875 34.615 23.24 0.00 35.56 4.40
2348 9837 6.489603 TCCCAAATATTTGTCTTTCTAGGCA 58.510 36.000 23.24 5.94 36.45 4.75
2349 9838 7.258441 GTTCCCAAATATTTGTCTTTCTAGGC 58.742 38.462 23.24 3.57 36.45 3.93
2350 9839 7.415206 CCGTTCCCAAATATTTGTCTTTCTAGG 60.415 40.741 23.24 15.51 36.45 3.02
2351 9840 7.335924 TCCGTTCCCAAATATTTGTCTTTCTAG 59.664 37.037 23.24 8.23 36.45 2.43
2352 9841 7.169591 TCCGTTCCCAAATATTTGTCTTTCTA 58.830 34.615 23.24 5.03 36.45 2.10
2353 9842 6.007703 TCCGTTCCCAAATATTTGTCTTTCT 58.992 36.000 23.24 0.00 36.45 2.52
2354 9843 6.262193 TCCGTTCCCAAATATTTGTCTTTC 57.738 37.500 23.24 10.84 36.45 2.62
2355 9844 5.185056 CCTCCGTTCCCAAATATTTGTCTTT 59.815 40.000 23.24 0.00 36.45 2.52
2356 9845 4.705023 CCTCCGTTCCCAAATATTTGTCTT 59.295 41.667 23.24 0.00 36.45 3.01
2357 9846 4.018779 TCCTCCGTTCCCAAATATTTGTCT 60.019 41.667 23.24 0.00 36.45 3.41
2358 9847 4.266714 TCCTCCGTTCCCAAATATTTGTC 58.733 43.478 23.24 11.68 36.45 3.18
2359 9848 4.310022 TCCTCCGTTCCCAAATATTTGT 57.690 40.909 23.24 0.00 36.45 2.83
2360 9849 4.705023 ACTTCCTCCGTTCCCAAATATTTG 59.295 41.667 19.40 19.40 37.90 2.32
2361 9850 4.930696 ACTTCCTCCGTTCCCAAATATTT 58.069 39.130 0.00 0.00 0.00 1.40
2362 9851 4.586306 ACTTCCTCCGTTCCCAAATATT 57.414 40.909 0.00 0.00 0.00 1.28
2363 9852 4.720273 ACTACTTCCTCCGTTCCCAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
2364 9853 4.098894 ACTACTTCCTCCGTTCCCAAATA 58.901 43.478 0.00 0.00 0.00 1.40
2365 9854 2.910977 ACTACTTCCTCCGTTCCCAAAT 59.089 45.455 0.00 0.00 0.00 2.32
2366 9855 2.332117 ACTACTTCCTCCGTTCCCAAA 58.668 47.619 0.00 0.00 0.00 3.28
2367 9856 2.019807 ACTACTTCCTCCGTTCCCAA 57.980 50.000 0.00 0.00 0.00 4.12
2368 9857 2.225091 TGTACTACTTCCTCCGTTCCCA 60.225 50.000 0.00 0.00 0.00 4.37
2369 9858 2.450476 TGTACTACTTCCTCCGTTCCC 58.550 52.381 0.00 0.00 0.00 3.97
2370 9859 4.525912 TTTGTACTACTTCCTCCGTTCC 57.474 45.455 0.00 0.00 0.00 3.62
2371 9860 5.176406 GTGTTTTGTACTACTTCCTCCGTTC 59.824 44.000 0.00 0.00 0.00 3.95
2372 9861 5.052481 GTGTTTTGTACTACTTCCTCCGTT 58.948 41.667 0.00 0.00 0.00 4.44
2373 9862 4.099881 TGTGTTTTGTACTACTTCCTCCGT 59.900 41.667 0.00 0.00 0.00 4.69
2374 9863 4.624015 TGTGTTTTGTACTACTTCCTCCG 58.376 43.478 0.00 0.00 0.00 4.63
2375 9864 6.053650 AGTTGTGTTTTGTACTACTTCCTCC 58.946 40.000 0.00 0.00 31.71 4.30
2376 9865 8.828688 ATAGTTGTGTTTTGTACTACTTCCTC 57.171 34.615 0.00 0.00 36.04 3.71
2377 9866 9.702494 GTATAGTTGTGTTTTGTACTACTTCCT 57.298 33.333 0.00 0.00 36.04 3.36
2378 9867 8.929746 GGTATAGTTGTGTTTTGTACTACTTCC 58.070 37.037 0.00 0.00 36.04 3.46
2379 9868 9.480053 TGGTATAGTTGTGTTTTGTACTACTTC 57.520 33.333 0.00 0.00 36.04 3.01
2380 9869 9.835389 TTGGTATAGTTGTGTTTTGTACTACTT 57.165 29.630 0.00 0.00 36.04 2.24
2381 9870 9.264719 GTTGGTATAGTTGTGTTTTGTACTACT 57.735 33.333 0.00 0.00 37.72 2.57
2382 9871 9.044150 TGTTGGTATAGTTGTGTTTTGTACTAC 57.956 33.333 0.00 0.00 0.00 2.73
2383 9872 9.781633 ATGTTGGTATAGTTGTGTTTTGTACTA 57.218 29.630 0.00 0.00 0.00 1.82
2384 9873 8.685838 ATGTTGGTATAGTTGTGTTTTGTACT 57.314 30.769 0.00 0.00 0.00 2.73
2387 9876 8.354426 GGTAATGTTGGTATAGTTGTGTTTTGT 58.646 33.333 0.00 0.00 0.00 2.83
2388 9877 7.535940 CGGTAATGTTGGTATAGTTGTGTTTTG 59.464 37.037 0.00 0.00 0.00 2.44
2389 9878 7.444792 TCGGTAATGTTGGTATAGTTGTGTTTT 59.555 33.333 0.00 0.00 0.00 2.43
2390 9879 6.935771 TCGGTAATGTTGGTATAGTTGTGTTT 59.064 34.615 0.00 0.00 0.00 2.83
2391 9880 6.465948 TCGGTAATGTTGGTATAGTTGTGTT 58.534 36.000 0.00 0.00 0.00 3.32
2392 9881 6.040209 TCGGTAATGTTGGTATAGTTGTGT 57.960 37.500 0.00 0.00 0.00 3.72
2393 9882 6.035650 CACTCGGTAATGTTGGTATAGTTGTG 59.964 42.308 0.00 0.00 0.00 3.33
2394 9883 6.103997 CACTCGGTAATGTTGGTATAGTTGT 58.896 40.000 0.00 0.00 0.00 3.32
2395 9884 5.006358 GCACTCGGTAATGTTGGTATAGTTG 59.994 44.000 0.00 0.00 0.00 3.16
2396 9885 5.114081 GCACTCGGTAATGTTGGTATAGTT 58.886 41.667 0.00 0.00 0.00 2.24
2397 9886 4.442472 GGCACTCGGTAATGTTGGTATAGT 60.442 45.833 0.00 0.00 0.00 2.12
2398 9887 4.056050 GGCACTCGGTAATGTTGGTATAG 58.944 47.826 0.00 0.00 0.00 1.31
2399 9888 3.181463 GGGCACTCGGTAATGTTGGTATA 60.181 47.826 0.00 0.00 0.00 1.47
2400 9889 2.420967 GGGCACTCGGTAATGTTGGTAT 60.421 50.000 0.00 0.00 0.00 2.73
2401 9890 1.065998 GGGCACTCGGTAATGTTGGTA 60.066 52.381 0.00 0.00 0.00 3.25
2402 9891 0.322187 GGGCACTCGGTAATGTTGGT 60.322 55.000 0.00 0.00 0.00 3.67
2403 9892 0.035439 AGGGCACTCGGTAATGTTGG 60.035 55.000 0.00 0.00 0.00 3.77
2404 9893 2.093658 AGTAGGGCACTCGGTAATGTTG 60.094 50.000 0.00 0.00 28.33 3.33
2405 9894 2.167900 GAGTAGGGCACTCGGTAATGTT 59.832 50.000 0.00 0.00 44.19 2.71
2406 9895 1.755380 GAGTAGGGCACTCGGTAATGT 59.245 52.381 0.00 0.00 44.19 2.71
2407 9896 2.510768 GAGTAGGGCACTCGGTAATG 57.489 55.000 0.00 0.00 44.19 1.90
2415 9904 2.559381 ATTCAGGAGAGTAGGGCACT 57.441 50.000 0.00 0.00 41.47 4.40
2416 9905 4.345257 TCAATATTCAGGAGAGTAGGGCAC 59.655 45.833 0.00 0.00 0.00 5.01
2417 9906 4.345257 GTCAATATTCAGGAGAGTAGGGCA 59.655 45.833 0.00 0.00 0.00 5.36
2418 9907 4.591072 AGTCAATATTCAGGAGAGTAGGGC 59.409 45.833 0.00 0.00 0.00 5.19
2419 9908 5.835819 TCAGTCAATATTCAGGAGAGTAGGG 59.164 44.000 0.00 0.00 0.00 3.53
2420 9909 6.775142 TCTCAGTCAATATTCAGGAGAGTAGG 59.225 42.308 0.00 0.00 0.00 3.18
2421 9910 7.815840 TCTCAGTCAATATTCAGGAGAGTAG 57.184 40.000 0.00 0.00 0.00 2.57
2422 9911 7.255766 GCATCTCAGTCAATATTCAGGAGAGTA 60.256 40.741 9.92 0.00 33.89 2.59
2423 9912 6.462768 GCATCTCAGTCAATATTCAGGAGAGT 60.463 42.308 9.92 0.00 33.89 3.24
2424 9913 5.927689 GCATCTCAGTCAATATTCAGGAGAG 59.072 44.000 9.92 0.00 33.89 3.20
2425 9914 5.364735 TGCATCTCAGTCAATATTCAGGAGA 59.635 40.000 7.64 7.64 34.77 3.71
2426 9915 5.466058 GTGCATCTCAGTCAATATTCAGGAG 59.534 44.000 0.00 0.00 0.00 3.69
2427 9916 5.104817 TGTGCATCTCAGTCAATATTCAGGA 60.105 40.000 0.00 0.00 0.00 3.86
2428 9917 5.007430 GTGTGCATCTCAGTCAATATTCAGG 59.993 44.000 0.00 0.00 0.00 3.86
2429 9918 5.816258 AGTGTGCATCTCAGTCAATATTCAG 59.184 40.000 0.00 0.00 0.00 3.02
2430 9919 5.583457 CAGTGTGCATCTCAGTCAATATTCA 59.417 40.000 0.00 0.00 0.00 2.57
2431 9920 5.007430 CCAGTGTGCATCTCAGTCAATATTC 59.993 44.000 0.00 0.00 0.00 1.75
2432 9921 4.880120 CCAGTGTGCATCTCAGTCAATATT 59.120 41.667 0.00 0.00 0.00 1.28
2433 9922 4.449131 CCAGTGTGCATCTCAGTCAATAT 58.551 43.478 0.00 0.00 0.00 1.28
2434 9923 3.865446 CCAGTGTGCATCTCAGTCAATA 58.135 45.455 0.00 0.00 0.00 1.90
2435 9924 2.708051 CCAGTGTGCATCTCAGTCAAT 58.292 47.619 0.00 0.00 0.00 2.57
2436 9925 1.879372 GCCAGTGTGCATCTCAGTCAA 60.879 52.381 0.00 0.00 0.00 3.18
2437 9926 0.321034 GCCAGTGTGCATCTCAGTCA 60.321 55.000 0.00 0.00 0.00 3.41
2438 9927 0.321034 TGCCAGTGTGCATCTCAGTC 60.321 55.000 0.00 0.00 36.04 3.51
2439 9928 0.604780 GTGCCAGTGTGCATCTCAGT 60.605 55.000 9.13 0.00 44.30 3.41
2440 9929 0.604511 TGTGCCAGTGTGCATCTCAG 60.605 55.000 9.13 0.00 44.30 3.35
2441 9930 0.604511 CTGTGCCAGTGTGCATCTCA 60.605 55.000 9.13 3.37 44.30 3.27
2442 9931 0.604780 ACTGTGCCAGTGTGCATCTC 60.605 55.000 9.13 0.00 43.63 2.75
2443 9932 1.453235 ACTGTGCCAGTGTGCATCT 59.547 52.632 9.13 0.00 43.63 2.90
2444 9933 4.069869 ACTGTGCCAGTGTGCATC 57.930 55.556 9.13 5.00 43.63 3.91
2451 9940 1.134128 TGATGTGTTCACTGTGCCAGT 60.134 47.619 2.12 2.38 46.51 4.00
2452 9941 1.596603 TGATGTGTTCACTGTGCCAG 58.403 50.000 2.12 1.16 37.52 4.85
2453 9942 3.796764 TGATGTGTTCACTGTGCCA 57.203 47.368 2.12 0.00 0.00 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.