Multiple sequence alignment - TraesCS2B01G204700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G204700 chr2B 100.000 4361 0 0 1 4361 184411259 184406899 0.000000e+00 8054.0
1 TraesCS2B01G204700 chr2B 99.004 803 8 0 3559 4361 572167232 572166430 0.000000e+00 1439.0
2 TraesCS2B01G204700 chr2B 92.088 594 43 4 1 593 619748156 619748746 0.000000e+00 833.0
3 TraesCS2B01G204700 chr2B 100.000 149 0 0 1568 1716 184409619 184409471 4.300000e-70 276.0
4 TraesCS2B01G204700 chr2B 100.000 149 0 0 1641 1789 184409692 184409544 4.300000e-70 276.0
5 TraesCS2B01G204700 chr2B 100.000 113 0 0 2434 2546 49318577 49318689 4.420000e-50 209.0
6 TraesCS2B01G204700 chr2B 100.000 76 0 0 1568 1643 184409546 184409471 1.640000e-29 141.0
7 TraesCS2B01G204700 chr2B 100.000 76 0 0 1714 1789 184409692 184409617 1.640000e-29 141.0
8 TraesCS2B01G204700 chr4B 98.134 804 15 0 3558 4361 581074907 581075710 0.000000e+00 1402.0
9 TraesCS2B01G204700 chr4B 84.764 466 57 13 145 602 75637937 75637478 5.140000e-124 455.0
10 TraesCS2B01G204700 chr4B 97.076 171 5 0 2546 2716 235739644 235739814 5.520000e-74 289.0
11 TraesCS2B01G204700 chr4B 95.858 169 7 0 2546 2714 199056461 199056629 1.550000e-69 274.0
12 TraesCS2B01G204700 chr4B 93.605 172 11 0 2546 2717 225959258 225959429 1.560000e-64 257.0
13 TraesCS2B01G204700 chr4B 88.095 168 14 2 2264 2431 199056292 199056453 1.240000e-45 195.0
14 TraesCS2B01G204700 chr4B 86.022 186 18 4 2249 2432 235739458 235739637 4.450000e-45 193.0
15 TraesCS2B01G204700 chr2D 90.223 941 54 9 2546 3481 130842702 130841795 0.000000e+00 1194.0
16 TraesCS2B01G204700 chr2D 90.650 738 43 8 1714 2432 130843439 130842709 0.000000e+00 957.0
17 TraesCS2B01G204700 chr2D 83.459 1064 62 44 614 1643 130844339 130843356 0.000000e+00 885.0
18 TraesCS2B01G204700 chr2D 88.095 84 2 1 1641 1716 130843439 130843356 4.640000e-15 93.5
19 TraesCS2B01G204700 chr2A 88.518 749 50 22 1714 2430 136951639 136950895 0.000000e+00 874.0
20 TraesCS2B01G204700 chr2A 83.878 949 50 39 739 1643 136952449 136951560 0.000000e+00 809.0
21 TraesCS2B01G204700 chr2A 87.431 724 51 14 2851 3559 136950138 136949440 0.000000e+00 797.0
22 TraesCS2B01G204700 chr2A 92.130 216 17 0 1997 2212 350240069 350239854 5.480000e-79 305.0
23 TraesCS2B01G204700 chr2A 88.745 231 16 4 2206 2432 350230730 350230506 1.550000e-69 274.0
24 TraesCS2B01G204700 chr2A 93.413 167 11 0 2546 2712 136950886 136950720 9.370000e-62 248.0
25 TraesCS2B01G204700 chr2A 97.436 117 3 0 2546 2662 350230499 350230383 2.660000e-47 200.0
26 TraesCS2B01G204700 chr2A 93.750 80 1 1 1641 1716 136951639 136951560 2.760000e-22 117.0
27 TraesCS2B01G204700 chr3B 97.561 410 10 0 3560 3969 785362086 785362495 0.000000e+00 702.0
28 TraesCS2B01G204700 chr3B 98.485 396 6 0 3966 4361 785375045 785375440 0.000000e+00 699.0
29 TraesCS2B01G204700 chr3B 89.849 463 43 4 131 592 16323881 16324340 3.760000e-165 592.0
30 TraesCS2B01G204700 chr3B 89.677 465 42 6 140 602 657803742 657804202 4.860000e-164 588.0
31 TraesCS2B01G204700 chr3B 85.931 462 56 8 133 592 699176435 699176889 6.560000e-133 484.0
32 TraesCS2B01G204700 chr3B 84.583 480 61 11 131 601 581095485 581095960 8.540000e-127 464.0
33 TraesCS2B01G204700 chr3B 77.731 238 44 6 2006 2237 540476684 540476450 2.120000e-28 137.0
34 TraesCS2B01G204700 chr3B 84.397 141 18 2 2 142 699176452 699176588 7.610000e-28 135.0
35 TraesCS2B01G204700 chr3A 88.036 443 43 4 1994 2432 34887003 34887439 2.330000e-142 516.0
36 TraesCS2B01G204700 chr3A 92.982 171 7 1 2546 2716 34887446 34887611 1.210000e-60 244.0
37 TraesCS2B01G204700 chr3A 99.138 116 1 0 2434 2549 372455706 372455591 4.420000e-50 209.0
38 TraesCS2B01G204700 chr3A 76.891 238 46 6 2006 2237 535727591 535727825 4.580000e-25 126.0
39 TraesCS2B01G204700 chr7B 83.422 561 68 14 4 549 238381294 238381844 8.420000e-137 497.0
40 TraesCS2B01G204700 chr7B 83.051 472 64 12 131 592 714380355 714379890 8.730000e-112 414.0
41 TraesCS2B01G204700 chr1B 85.333 450 62 4 144 592 502077913 502078359 3.070000e-126 462.0
42 TraesCS2B01G204700 chr7A 90.462 325 19 5 2113 2432 590184952 590185269 6.750000e-113 418.0
43 TraesCS2B01G204700 chr7A 95.055 182 7 2 2546 2727 590185276 590185455 7.140000e-73 285.0
44 TraesCS2B01G204700 chr7A 100.000 113 0 0 2434 2546 546640113 546640225 4.420000e-50 209.0
45 TraesCS2B01G204700 chr7A 95.238 126 5 1 2425 2549 734289042 734288917 9.570000e-47 198.0
46 TraesCS2B01G204700 chr5D 100.000 113 0 0 2434 2546 303929139 303929251 4.420000e-50 209.0
47 TraesCS2B01G204700 chr5A 100.000 113 0 0 2434 2546 608862228 608862340 4.420000e-50 209.0
48 TraesCS2B01G204700 chrUn 99.115 113 1 0 2434 2546 50586933 50587045 2.060000e-48 204.0
49 TraesCS2B01G204700 chrUn 99.115 113 1 0 2434 2546 243391320 243391432 2.060000e-48 204.0
50 TraesCS2B01G204700 chrUn 98.276 116 2 0 2434 2549 278339264 278339149 2.060000e-48 204.0
51 TraesCS2B01G204700 chr3D 78.151 238 43 6 2006 2237 414637785 414637551 4.550000e-30 143.0
52 TraesCS2B01G204700 chr6B 84.397 141 20 1 2 142 470912710 470912848 2.120000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G204700 chr2B 184406899 184411259 4360 True 1777.600 8054 100.00000 1 4361 5 chr2B.!!$R2 4360
1 TraesCS2B01G204700 chr2B 572166430 572167232 802 True 1439.000 1439 99.00400 3559 4361 1 chr2B.!!$R1 802
2 TraesCS2B01G204700 chr2B 619748156 619748746 590 False 833.000 833 92.08800 1 593 1 chr2B.!!$F2 592
3 TraesCS2B01G204700 chr4B 581074907 581075710 803 False 1402.000 1402 98.13400 3558 4361 1 chr4B.!!$F2 803
4 TraesCS2B01G204700 chr2D 130841795 130844339 2544 True 782.375 1194 88.10675 614 3481 4 chr2D.!!$R1 2867
5 TraesCS2B01G204700 chr2A 136949440 136952449 3009 True 569.000 874 89.39800 739 3559 5 chr2A.!!$R2 2820
6 TraesCS2B01G204700 chr3A 34887003 34887611 608 False 380.000 516 90.50900 1994 2716 2 chr3A.!!$F2 722
7 TraesCS2B01G204700 chr7B 238381294 238381844 550 False 497.000 497 83.42200 4 549 1 chr7B.!!$F1 545
8 TraesCS2B01G204700 chr7A 590184952 590185455 503 False 351.500 418 92.75850 2113 2727 2 chr7A.!!$F2 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 406 0.036294 GAAAGAACTGGAGGGACCCG 60.036 60.0 4.40 0.00 38.00 5.28 F
1638 1711 0.242825 CTGTCAGCAAGGTGCCAATG 59.757 55.0 0.00 0.00 46.52 2.82 F
2445 2703 0.109039 GTTGAGTGACGAGGCTCCTC 60.109 60.0 9.32 10.01 39.55 3.71 F
2458 2716 0.179150 GCTCCTCTGACGTACTGCAG 60.179 60.0 13.48 13.48 0.00 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1622 1695 0.178967 TTCCATTGGCACCTTGCTGA 60.179 50.0 0.00 0.0 44.28 4.26 R
3331 4055 0.107752 GCCAGGAAGAAGAGGAGCAG 60.108 60.0 0.00 0.0 0.00 4.24 R
3341 4065 0.252761 TCATGCGAATGCCAGGAAGA 59.747 50.0 0.00 0.0 41.78 2.87 R
3630 4367 0.802494 CCAAAATACCTCACGCGCTT 59.198 50.0 5.73 0.0 0.00 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
248 249 1.562783 GCTGTCCCTTCCTCACTACT 58.437 55.000 0.00 0.00 0.00 2.57
310 311 0.823460 CCGGATTTGGTGGATTTGGG 59.177 55.000 0.00 0.00 0.00 4.12
357 359 2.706834 GGGCGGTTTCGAAATGGGG 61.707 63.158 14.69 5.12 39.00 4.96
359 361 2.483288 CGGTTTCGAAATGGGGCG 59.517 61.111 14.69 0.00 39.00 6.13
386 388 2.038975 CGGAAGTGGGGAGGGAGA 59.961 66.667 0.00 0.00 0.00 3.71
404 406 0.036294 GAAAGAACTGGAGGGACCCG 60.036 60.000 4.40 0.00 38.00 5.28
561 576 4.461992 GCGTGTGCTTTTGTAAGACTAA 57.538 40.909 0.00 0.00 38.39 2.24
571 586 6.743172 GCTTTTGTAAGACTAATTAGCACAGC 59.257 38.462 12.54 8.07 32.92 4.40
574 589 6.037786 TGTAAGACTAATTAGCACAGCTGT 57.962 37.500 15.25 15.25 40.10 4.40
593 608 6.016610 CAGCTGTACTTTTTAGGTTTTAGGCA 60.017 38.462 5.25 0.00 0.00 4.75
594 609 6.548251 AGCTGTACTTTTTAGGTTTTAGGCAA 59.452 34.615 0.00 0.00 0.00 4.52
595 610 7.232737 AGCTGTACTTTTTAGGTTTTAGGCAAT 59.767 33.333 0.00 0.00 0.00 3.56
596 611 8.517056 GCTGTACTTTTTAGGTTTTAGGCAATA 58.483 33.333 0.00 0.00 0.00 1.90
607 622 7.092137 GGTTTTAGGCAATAATAAACCTCGT 57.908 36.000 0.00 0.00 42.67 4.18
608 623 8.212317 GGTTTTAGGCAATAATAAACCTCGTA 57.788 34.615 0.00 0.00 42.67 3.43
609 624 8.843262 GGTTTTAGGCAATAATAAACCTCGTAT 58.157 33.333 0.00 0.00 42.67 3.06
610 625 9.659830 GTTTTAGGCAATAATAAACCTCGTATG 57.340 33.333 0.00 0.00 33.60 2.39
611 626 8.967664 TTTAGGCAATAATAAACCTCGTATGT 57.032 30.769 0.00 0.00 33.60 2.29
626 641 8.345724 ACCTCGTATGTACTCTTTCTCTAAAA 57.654 34.615 0.00 0.00 0.00 1.52
627 642 8.242739 ACCTCGTATGTACTCTTTCTCTAAAAC 58.757 37.037 0.00 0.00 0.00 2.43
647 662 1.485066 CTAAACAGCCCGACCCATACT 59.515 52.381 0.00 0.00 0.00 2.12
653 668 2.368875 CAGCCCGACCCATACTATTCTT 59.631 50.000 0.00 0.00 0.00 2.52
659 674 5.761726 CCCGACCCATACTATTCTTTTTACC 59.238 44.000 0.00 0.00 0.00 2.85
660 675 5.464389 CCGACCCATACTATTCTTTTTACCG 59.536 44.000 0.00 0.00 0.00 4.02
663 678 6.053650 ACCCATACTATTCTTTTTACCGAGC 58.946 40.000 0.00 0.00 0.00 5.03
668 683 5.668471 ACTATTCTTTTTACCGAGCCCTAC 58.332 41.667 0.00 0.00 0.00 3.18
763 778 3.252284 CCCACAGGCCACAGGTCT 61.252 66.667 5.01 0.00 38.72 3.85
883 901 2.738521 CACCGAAGCACACTCCCG 60.739 66.667 0.00 0.00 0.00 5.14
885 903 4.680237 CCGAAGCACACTCCCGCA 62.680 66.667 0.00 0.00 0.00 5.69
886 904 3.414700 CGAAGCACACTCCCGCAC 61.415 66.667 0.00 0.00 0.00 5.34
887 905 3.050275 GAAGCACACTCCCGCACC 61.050 66.667 0.00 0.00 0.00 5.01
902 950 3.637273 ACCCCCGTTGCCACTCTC 61.637 66.667 0.00 0.00 0.00 3.20
904 952 4.760047 CCCCGTTGCCACTCTCCG 62.760 72.222 0.00 0.00 0.00 4.63
915 963 2.520741 CTCTCCGCTCCCCTCCTC 60.521 72.222 0.00 0.00 0.00 3.71
919 967 4.888325 CCGCTCCCCTCCTCCCAT 62.888 72.222 0.00 0.00 0.00 4.00
921 969 2.288643 GCTCCCCTCCTCCCATCT 59.711 66.667 0.00 0.00 0.00 2.90
955 1003 3.712907 CCCCTTCTTCCGCCGGAA 61.713 66.667 18.97 18.97 39.66 4.30
964 1012 3.691342 CCGCCGGAACTCTCCACA 61.691 66.667 5.05 0.00 42.58 4.17
972 1020 0.457681 GAACTCTCCACAGCGCTCTC 60.458 60.000 7.13 0.00 0.00 3.20
976 1024 2.036414 TCCACAGCGCTCTCCTCT 59.964 61.111 7.13 0.00 0.00 3.69
978 1026 2.508887 CACAGCGCTCTCCTCTGC 60.509 66.667 7.13 0.00 0.00 4.26
979 1027 2.679642 ACAGCGCTCTCCTCTGCT 60.680 61.111 7.13 0.00 38.43 4.24
980 1028 2.104729 CAGCGCTCTCCTCTGCTC 59.895 66.667 7.13 0.00 34.99 4.26
981 1029 3.146913 AGCGCTCTCCTCTGCTCC 61.147 66.667 2.64 0.00 30.37 4.70
982 1030 4.567385 GCGCTCTCCTCTGCTCCG 62.567 72.222 0.00 0.00 0.00 4.63
983 1031 3.898509 CGCTCTCCTCTGCTCCGG 61.899 72.222 0.00 0.00 0.00 5.14
984 1032 4.219999 GCTCTCCTCTGCTCCGGC 62.220 72.222 0.00 0.00 39.26 6.13
985 1033 3.535962 CTCTCCTCTGCTCCGGCC 61.536 72.222 0.00 0.00 37.74 6.13
1127 1176 0.613572 TCTTGGATTTTTCCCGGGCC 60.614 55.000 18.49 11.08 0.00 5.80
1171 1220 6.013842 GACTCCTTGTCTATTTTGTTTGGG 57.986 41.667 0.00 0.00 42.21 4.12
1172 1221 5.701224 ACTCCTTGTCTATTTTGTTTGGGA 58.299 37.500 0.00 0.00 0.00 4.37
1173 1222 6.133356 ACTCCTTGTCTATTTTGTTTGGGAA 58.867 36.000 0.00 0.00 0.00 3.97
1174 1223 6.265422 ACTCCTTGTCTATTTTGTTTGGGAAG 59.735 38.462 0.00 0.00 0.00 3.46
1175 1224 6.133356 TCCTTGTCTATTTTGTTTGGGAAGT 58.867 36.000 0.00 0.00 0.00 3.01
1176 1225 6.609616 TCCTTGTCTATTTTGTTTGGGAAGTT 59.390 34.615 0.00 0.00 0.00 2.66
1177 1226 7.125053 TCCTTGTCTATTTTGTTTGGGAAGTTT 59.875 33.333 0.00 0.00 0.00 2.66
1178 1227 7.224557 CCTTGTCTATTTTGTTTGGGAAGTTTG 59.775 37.037 0.00 0.00 0.00 2.93
1179 1228 7.411486 TGTCTATTTTGTTTGGGAAGTTTGA 57.589 32.000 0.00 0.00 0.00 2.69
1180 1229 7.262048 TGTCTATTTTGTTTGGGAAGTTTGAC 58.738 34.615 0.00 0.00 0.00 3.18
1181 1230 7.093727 TGTCTATTTTGTTTGGGAAGTTTGACA 60.094 33.333 0.00 0.00 0.00 3.58
1182 1231 7.926018 GTCTATTTTGTTTGGGAAGTTTGACAT 59.074 33.333 0.00 0.00 0.00 3.06
1183 1232 8.141268 TCTATTTTGTTTGGGAAGTTTGACATC 58.859 33.333 0.00 0.00 0.00 3.06
1184 1233 5.930837 TTTGTTTGGGAAGTTTGACATCT 57.069 34.783 0.00 0.00 0.00 2.90
1185 1234 4.916983 TGTTTGGGAAGTTTGACATCTG 57.083 40.909 0.00 0.00 0.00 2.90
1186 1235 3.636300 TGTTTGGGAAGTTTGACATCTGG 59.364 43.478 0.00 0.00 0.00 3.86
1187 1236 3.874383 TTGGGAAGTTTGACATCTGGA 57.126 42.857 0.00 0.00 0.00 3.86
1188 1237 3.423539 TGGGAAGTTTGACATCTGGAG 57.576 47.619 0.00 0.00 0.00 3.86
1189 1238 2.087646 GGGAAGTTTGACATCTGGAGC 58.912 52.381 0.00 0.00 0.00 4.70
1190 1239 2.087646 GGAAGTTTGACATCTGGAGCC 58.912 52.381 0.00 0.00 0.00 4.70
1198 1247 4.148825 ATCTGGAGCCGTCGGTGC 62.149 66.667 13.94 5.81 0.00 5.01
1221 1270 0.320771 TCTTCAGCTTCTTCGGTGCC 60.321 55.000 0.00 0.00 32.68 5.01
1244 1293 1.547820 TCTAGAGCCACTGCACTTCTG 59.452 52.381 0.00 0.00 39.29 3.02
1253 1302 4.318332 CCACTGCACTTCTGTTCTTCATA 58.682 43.478 0.00 0.00 0.00 2.15
1257 1306 7.365741 CACTGCACTTCTGTTCTTCATATTTT 58.634 34.615 0.00 0.00 0.00 1.82
1258 1307 7.864379 CACTGCACTTCTGTTCTTCATATTTTT 59.136 33.333 0.00 0.00 0.00 1.94
1287 1336 2.099141 GCAGAATGGTGTAGCACTGA 57.901 50.000 0.00 0.00 35.86 3.41
1293 1342 4.162888 AGAATGGTGTAGCACTGATGATGA 59.837 41.667 0.00 0.00 34.40 2.92
1304 1353 9.481340 GTAGCACTGATGATGATTCTTGTTATA 57.519 33.333 0.00 0.00 0.00 0.98
1305 1354 8.969260 AGCACTGATGATGATTCTTGTTATAA 57.031 30.769 0.00 0.00 0.00 0.98
1306 1355 9.570468 AGCACTGATGATGATTCTTGTTATAAT 57.430 29.630 0.00 0.00 0.00 1.28
1307 1356 9.608617 GCACTGATGATGATTCTTGTTATAATG 57.391 33.333 0.00 0.00 0.00 1.90
1318 1373 9.941664 GATTCTTGTTATAATGTTCATCAGTGG 57.058 33.333 0.00 0.00 0.00 4.00
1319 1374 7.320443 TCTTGTTATAATGTTCATCAGTGGC 57.680 36.000 0.00 0.00 0.00 5.01
1351 1406 6.349115 GCTTGAAAGATCAAAAGATCTGCTCA 60.349 38.462 8.60 11.08 44.64 4.26
1352 1407 7.628794 GCTTGAAAGATCAAAAGATCTGCTCAT 60.629 37.037 15.50 0.00 44.64 2.90
1353 1408 7.317842 TGAAAGATCAAAAGATCTGCTCATC 57.682 36.000 8.60 0.00 40.72 2.92
1354 1409 7.110810 TGAAAGATCAAAAGATCTGCTCATCT 58.889 34.615 8.60 0.00 40.72 2.90
1357 1412 6.891388 AGATCAAAAGATCTGCTCATCTTCT 58.109 36.000 7.16 2.42 41.45 2.85
1422 1480 6.271488 TGGCTATGATTTCTCACCTTTTTG 57.729 37.500 0.00 0.00 33.22 2.44
1520 1593 6.490040 TCTTCTTCCATCTTCACGGAATTTTT 59.510 34.615 0.00 0.00 40.46 1.94
1578 1651 9.823647 TTCCAAAAGTAAATAAAAGCATTCACA 57.176 25.926 0.00 0.00 0.00 3.58
1612 1685 6.708054 CAGGAGCATATATTCCGTTCTTTCTT 59.292 38.462 0.00 0.00 38.54 2.52
1613 1686 7.227512 CAGGAGCATATATTCCGTTCTTTCTTT 59.772 37.037 0.00 0.00 38.54 2.52
1614 1687 7.442666 AGGAGCATATATTCCGTTCTTTCTTTC 59.557 37.037 0.00 0.00 38.54 2.62
1615 1688 7.442666 GGAGCATATATTCCGTTCTTTCTTTCT 59.557 37.037 0.00 0.00 0.00 2.52
1616 1689 8.738645 AGCATATATTCCGTTCTTTCTTTCTT 57.261 30.769 0.00 0.00 0.00 2.52
1617 1690 9.178758 AGCATATATTCCGTTCTTTCTTTCTTT 57.821 29.630 0.00 0.00 0.00 2.52
1618 1691 9.226345 GCATATATTCCGTTCTTTCTTTCTTTG 57.774 33.333 0.00 0.00 0.00 2.77
1619 1692 9.226345 CATATATTCCGTTCTTTCTTTCTTTGC 57.774 33.333 0.00 0.00 0.00 3.68
1620 1693 5.774498 ATTCCGTTCTTTCTTTCTTTGCT 57.226 34.783 0.00 0.00 0.00 3.91
1621 1694 4.552166 TCCGTTCTTTCTTTCTTTGCTG 57.448 40.909 0.00 0.00 0.00 4.41
1622 1695 3.945285 TCCGTTCTTTCTTTCTTTGCTGT 59.055 39.130 0.00 0.00 0.00 4.40
1623 1696 4.035208 TCCGTTCTTTCTTTCTTTGCTGTC 59.965 41.667 0.00 0.00 0.00 3.51
1624 1697 4.201910 CCGTTCTTTCTTTCTTTGCTGTCA 60.202 41.667 0.00 0.00 0.00 3.58
1625 1698 4.966366 CGTTCTTTCTTTCTTTGCTGTCAG 59.034 41.667 0.00 0.00 0.00 3.51
1626 1699 4.558538 TCTTTCTTTCTTTGCTGTCAGC 57.441 40.909 18.32 18.32 42.82 4.26
1635 1708 2.595463 GCTGTCAGCAAGGTGCCA 60.595 61.111 20.16 0.00 46.52 4.92
1636 1709 2.195567 GCTGTCAGCAAGGTGCCAA 61.196 57.895 20.16 0.00 46.52 4.52
1637 1710 1.530013 GCTGTCAGCAAGGTGCCAAT 61.530 55.000 20.16 0.00 46.52 3.16
1638 1711 0.242825 CTGTCAGCAAGGTGCCAATG 59.757 55.000 0.00 0.00 46.52 2.82
1639 1712 1.180456 TGTCAGCAAGGTGCCAATGG 61.180 55.000 0.00 0.00 46.52 3.16
1640 1713 0.895100 GTCAGCAAGGTGCCAATGGA 60.895 55.000 2.05 0.00 46.52 3.41
1641 1714 0.178967 TCAGCAAGGTGCCAATGGAA 60.179 50.000 2.05 0.00 46.52 3.53
1642 1715 0.680618 CAGCAAGGTGCCAATGGAAA 59.319 50.000 2.05 0.00 46.52 3.13
1643 1716 0.971386 AGCAAGGTGCCAATGGAAAG 59.029 50.000 2.05 0.00 46.52 2.62
1644 1717 0.671472 GCAAGGTGCCAATGGAAAGC 60.671 55.000 2.05 0.00 37.42 3.51
1645 1718 0.680618 CAAGGTGCCAATGGAAAGCA 59.319 50.000 2.05 0.00 0.00 3.91
1646 1719 1.276989 CAAGGTGCCAATGGAAAGCAT 59.723 47.619 2.05 0.00 39.04 3.79
1647 1720 1.648116 AGGTGCCAATGGAAAGCATT 58.352 45.000 2.05 0.00 39.04 3.56
1648 1721 1.551883 AGGTGCCAATGGAAAGCATTC 59.448 47.619 2.05 0.00 39.04 2.67
1649 1722 1.275856 GGTGCCAATGGAAAGCATTCA 59.724 47.619 2.05 0.00 39.04 2.57
1650 1723 2.340337 GTGCCAATGGAAAGCATTCAC 58.660 47.619 2.05 0.00 39.04 3.18
1651 1724 1.969208 TGCCAATGGAAAGCATTCACA 59.031 42.857 2.05 0.04 37.29 3.58
1652 1725 2.367894 TGCCAATGGAAAGCATTCACAA 59.632 40.909 2.05 0.00 37.29 3.33
1653 1726 2.738314 GCCAATGGAAAGCATTCACAAC 59.262 45.455 2.05 0.00 37.29 3.32
1654 1727 3.328505 CCAATGGAAAGCATTCACAACC 58.671 45.455 3.82 0.00 37.29 3.77
1655 1728 3.007182 CCAATGGAAAGCATTCACAACCT 59.993 43.478 3.82 0.00 37.29 3.50
1656 1729 4.503643 CCAATGGAAAGCATTCACAACCTT 60.504 41.667 3.82 0.00 37.29 3.50
1657 1730 4.961438 ATGGAAAGCATTCACAACCTTT 57.039 36.364 3.82 0.00 37.29 3.11
1658 1731 6.222389 CAATGGAAAGCATTCACAACCTTTA 58.778 36.000 3.82 0.00 37.29 1.85
1659 1732 6.610075 ATGGAAAGCATTCACAACCTTTAT 57.390 33.333 3.82 0.00 37.29 1.40
1660 1733 6.024552 TGGAAAGCATTCACAACCTTTATC 57.975 37.500 3.82 0.00 37.29 1.75
1661 1734 5.538053 TGGAAAGCATTCACAACCTTTATCA 59.462 36.000 3.82 0.00 37.29 2.15
1662 1735 6.095377 GGAAAGCATTCACAACCTTTATCAG 58.905 40.000 3.82 0.00 37.29 2.90
1663 1736 6.095377 GAAAGCATTCACAACCTTTATCAGG 58.905 40.000 0.00 0.00 40.98 3.86
1664 1737 6.071952 GAAAGCATTCACAACCTTTATCAGGA 60.072 38.462 0.00 0.00 39.11 3.86
1665 1738 7.839611 GAAAGCATTCACAACCTTTATCAGGAG 60.840 40.741 0.00 0.00 39.11 3.69
1679 1752 8.190888 CTTTATCAGGAGCATATATTCCGTTC 57.809 38.462 0.00 0.00 38.54 3.95
1680 1753 7.482169 TTATCAGGAGCATATATTCCGTTCT 57.518 36.000 0.00 0.00 38.54 3.01
1681 1754 5.808366 TCAGGAGCATATATTCCGTTCTT 57.192 39.130 0.00 0.00 38.54 2.52
1682 1755 6.174720 TCAGGAGCATATATTCCGTTCTTT 57.825 37.500 0.00 0.00 38.54 2.52
1683 1756 6.223852 TCAGGAGCATATATTCCGTTCTTTC 58.776 40.000 0.00 0.00 38.54 2.62
1684 1757 6.042093 TCAGGAGCATATATTCCGTTCTTTCT 59.958 38.462 0.00 0.00 38.54 2.52
1685 1758 6.708054 CAGGAGCATATATTCCGTTCTTTCTT 59.292 38.462 0.00 0.00 38.54 2.52
1686 1759 7.227512 CAGGAGCATATATTCCGTTCTTTCTTT 59.772 37.037 0.00 0.00 38.54 2.52
1687 1760 7.442666 AGGAGCATATATTCCGTTCTTTCTTTC 59.557 37.037 0.00 0.00 38.54 2.62
1688 1761 7.442666 GGAGCATATATTCCGTTCTTTCTTTCT 59.557 37.037 0.00 0.00 0.00 2.52
1689 1762 8.738645 AGCATATATTCCGTTCTTTCTTTCTT 57.261 30.769 0.00 0.00 0.00 2.52
1690 1763 9.178758 AGCATATATTCCGTTCTTTCTTTCTTT 57.821 29.630 0.00 0.00 0.00 2.52
1691 1764 9.226345 GCATATATTCCGTTCTTTCTTTCTTTG 57.774 33.333 0.00 0.00 0.00 2.77
1692 1765 9.226345 CATATATTCCGTTCTTTCTTTCTTTGC 57.774 33.333 0.00 0.00 0.00 3.68
1693 1766 5.774498 ATTCCGTTCTTTCTTTCTTTGCT 57.226 34.783 0.00 0.00 0.00 3.91
1694 1767 4.552166 TCCGTTCTTTCTTTCTTTGCTG 57.448 40.909 0.00 0.00 0.00 4.41
1695 1768 3.945285 TCCGTTCTTTCTTTCTTTGCTGT 59.055 39.130 0.00 0.00 0.00 4.40
1696 1769 4.035208 TCCGTTCTTTCTTTCTTTGCTGTC 59.965 41.667 0.00 0.00 0.00 3.51
1697 1770 4.201910 CCGTTCTTTCTTTCTTTGCTGTCA 60.202 41.667 0.00 0.00 0.00 3.58
1698 1771 4.966366 CGTTCTTTCTTTCTTTGCTGTCAG 59.034 41.667 0.00 0.00 0.00 3.51
1699 1772 4.558538 TCTTTCTTTCTTTGCTGTCAGC 57.441 40.909 18.32 18.32 42.82 4.26
1708 1781 2.595463 GCTGTCAGCAAGGTGCCA 60.595 61.111 20.16 0.00 46.52 4.92
1709 1782 2.195567 GCTGTCAGCAAGGTGCCAA 61.196 57.895 20.16 0.00 46.52 4.52
1710 1783 1.530013 GCTGTCAGCAAGGTGCCAAT 61.530 55.000 20.16 0.00 46.52 3.16
1711 1784 0.242825 CTGTCAGCAAGGTGCCAATG 59.757 55.000 0.00 0.00 46.52 2.82
1712 1785 1.180456 TGTCAGCAAGGTGCCAATGG 61.180 55.000 0.00 0.00 46.52 3.16
1713 1786 0.895100 GTCAGCAAGGTGCCAATGGA 60.895 55.000 2.05 0.00 46.52 3.41
1714 1787 0.178967 TCAGCAAGGTGCCAATGGAA 60.179 50.000 2.05 0.00 46.52 3.53
1715 1788 0.680618 CAGCAAGGTGCCAATGGAAA 59.319 50.000 2.05 0.00 46.52 3.13
1716 1789 0.971386 AGCAAGGTGCCAATGGAAAG 59.029 50.000 2.05 0.00 46.52 2.62
1717 1790 0.671472 GCAAGGTGCCAATGGAAAGC 60.671 55.000 2.05 0.00 37.42 3.51
1718 1791 0.680618 CAAGGTGCCAATGGAAAGCA 59.319 50.000 2.05 0.00 0.00 3.91
1719 1792 1.276989 CAAGGTGCCAATGGAAAGCAT 59.723 47.619 2.05 0.00 39.04 3.79
1720 1793 1.648116 AGGTGCCAATGGAAAGCATT 58.352 45.000 2.05 0.00 39.04 3.56
1721 1794 1.551883 AGGTGCCAATGGAAAGCATTC 59.448 47.619 2.05 0.00 39.04 2.67
1722 1795 1.275856 GGTGCCAATGGAAAGCATTCA 59.724 47.619 2.05 0.00 39.04 2.57
1723 1796 2.340337 GTGCCAATGGAAAGCATTCAC 58.660 47.619 2.05 0.00 39.04 3.18
1724 1797 1.969208 TGCCAATGGAAAGCATTCACA 59.031 42.857 2.05 0.04 37.29 3.58
1725 1798 2.367894 TGCCAATGGAAAGCATTCACAA 59.632 40.909 2.05 0.00 37.29 3.33
1726 1799 2.738314 GCCAATGGAAAGCATTCACAAC 59.262 45.455 2.05 0.00 37.29 3.32
1727 1800 3.328505 CCAATGGAAAGCATTCACAACC 58.671 45.455 3.82 0.00 37.29 3.77
1728 1801 3.007182 CCAATGGAAAGCATTCACAACCT 59.993 43.478 3.82 0.00 37.29 3.50
1729 1802 4.503643 CCAATGGAAAGCATTCACAACCTT 60.504 41.667 3.82 0.00 37.29 3.50
1730 1803 4.961438 ATGGAAAGCATTCACAACCTTT 57.039 36.364 3.82 0.00 37.29 3.11
1731 1804 6.222389 CAATGGAAAGCATTCACAACCTTTA 58.778 36.000 3.82 0.00 37.29 1.85
1732 1805 6.610075 ATGGAAAGCATTCACAACCTTTAT 57.390 33.333 3.82 0.00 37.29 1.40
1733 1806 6.024552 TGGAAAGCATTCACAACCTTTATC 57.975 37.500 3.82 0.00 37.29 1.75
1734 1807 5.538053 TGGAAAGCATTCACAACCTTTATCA 59.462 36.000 3.82 0.00 37.29 2.15
1735 1808 6.095377 GGAAAGCATTCACAACCTTTATCAG 58.905 40.000 3.82 0.00 37.29 2.90
1736 1809 6.095377 GAAAGCATTCACAACCTTTATCAGG 58.905 40.000 0.00 0.00 40.98 3.86
1737 1810 6.071952 GAAAGCATTCACAACCTTTATCAGGA 60.072 38.462 0.00 0.00 39.11 3.86
1738 1811 7.839611 GAAAGCATTCACAACCTTTATCAGGAG 60.840 40.741 0.00 0.00 39.11 3.69
1816 2028 0.984230 TTCTCGCCCATCCTTTCTGT 59.016 50.000 0.00 0.00 0.00 3.41
1825 2037 4.819088 GCCCATCCTTTCTGTTCTTATCTC 59.181 45.833 0.00 0.00 0.00 2.75
1850 2062 3.132646 TGCTGCTTTTGTCACATTCCTTT 59.867 39.130 0.00 0.00 0.00 3.11
1878 2099 7.959651 CCATAATTTCAAGAGAAGAAACTGACG 59.040 37.037 0.00 0.00 37.76 4.35
1925 2168 4.390909 ACGCCTGTGTTTAATTGCTAGTAC 59.609 41.667 0.00 0.00 0.00 2.73
1926 2169 4.630069 CGCCTGTGTTTAATTGCTAGTACT 59.370 41.667 0.00 0.00 0.00 2.73
1927 2170 5.220416 CGCCTGTGTTTAATTGCTAGTACTC 60.220 44.000 0.00 0.00 0.00 2.59
1933 2176 5.486063 TGTTTAATTGCTAGTACTCCTCCCA 59.514 40.000 0.00 0.00 0.00 4.37
1946 2193 0.394899 CCTCCCAGCCATTTGACCTC 60.395 60.000 0.00 0.00 0.00 3.85
2286 2540 1.544246 GCCCACCGTTTAGATTTTGCT 59.456 47.619 0.00 0.00 0.00 3.91
2336 2590 0.233332 GACTGTCGTTGAGCAACTGC 59.767 55.000 11.16 0.00 39.08 4.40
2369 2623 3.058224 GTGGACTGTGCAATGGTCTTTAC 60.058 47.826 2.79 7.71 0.00 2.01
2378 2632 5.932303 GTGCAATGGTCTTTACTGTAGAAGA 59.068 40.000 0.00 7.76 0.00 2.87
2432 2690 4.572389 GTCAGTGTCACATTTCAGTTGAGT 59.428 41.667 5.62 0.00 0.00 3.41
2433 2691 4.571984 TCAGTGTCACATTTCAGTTGAGTG 59.428 41.667 5.62 0.00 0.00 3.51
2436 2694 4.120646 GTCACATTTCAGTTGAGTGACG 57.879 45.455 13.75 0.00 46.23 4.35
2438 2696 4.051237 TCACATTTCAGTTGAGTGACGAG 58.949 43.478 0.00 0.00 34.59 4.18
2439 2697 3.185188 CACATTTCAGTTGAGTGACGAGG 59.815 47.826 0.00 0.00 32.14 4.63
2440 2698 1.865865 TTTCAGTTGAGTGACGAGGC 58.134 50.000 0.00 0.00 0.00 4.70
2441 2699 1.040646 TTCAGTTGAGTGACGAGGCT 58.959 50.000 0.00 0.00 0.00 4.58
2442 2700 0.598562 TCAGTTGAGTGACGAGGCTC 59.401 55.000 3.87 3.87 0.00 4.70
2443 2701 0.389166 CAGTTGAGTGACGAGGCTCC 60.389 60.000 9.32 0.00 0.00 4.70
2444 2702 0.540830 AGTTGAGTGACGAGGCTCCT 60.541 55.000 9.32 0.00 0.00 3.69
2445 2703 0.109039 GTTGAGTGACGAGGCTCCTC 60.109 60.000 9.32 10.01 39.55 3.71
2446 2704 0.251386 TTGAGTGACGAGGCTCCTCT 60.251 55.000 9.32 1.95 40.69 3.69
2447 2705 0.962855 TGAGTGACGAGGCTCCTCTG 60.963 60.000 9.32 9.55 40.69 3.35
2448 2706 0.678366 GAGTGACGAGGCTCCTCTGA 60.678 60.000 9.32 0.00 40.69 3.27
2449 2707 0.963355 AGTGACGAGGCTCCTCTGAC 60.963 60.000 9.32 2.69 40.69 3.51
2450 2708 2.041115 TGACGAGGCTCCTCTGACG 61.041 63.158 9.32 4.08 40.69 4.35
2451 2709 2.034376 ACGAGGCTCCTCTGACGT 59.966 61.111 9.32 4.69 40.69 4.34
2452 2710 0.743701 GACGAGGCTCCTCTGACGTA 60.744 60.000 9.32 0.00 40.69 3.57
2453 2711 1.025647 ACGAGGCTCCTCTGACGTAC 61.026 60.000 9.32 0.00 40.69 3.67
2454 2712 0.745128 CGAGGCTCCTCTGACGTACT 60.745 60.000 9.32 0.00 40.69 2.73
2455 2713 0.736053 GAGGCTCCTCTGACGTACTG 59.264 60.000 2.15 0.00 39.80 2.74
2456 2714 1.139947 GGCTCCTCTGACGTACTGC 59.860 63.158 0.00 0.00 0.00 4.40
2457 2715 1.595993 GGCTCCTCTGACGTACTGCA 61.596 60.000 0.00 0.00 0.00 4.41
2458 2716 0.179150 GCTCCTCTGACGTACTGCAG 60.179 60.000 13.48 13.48 0.00 4.41
2459 2717 0.453793 CTCCTCTGACGTACTGCAGG 59.546 60.000 19.93 2.38 33.05 4.85
2460 2718 0.965866 TCCTCTGACGTACTGCAGGG 60.966 60.000 19.93 9.39 33.05 4.45
2461 2719 1.153745 CTCTGACGTACTGCAGGGC 60.154 63.158 19.93 9.18 33.05 5.19
2462 2720 2.507102 CTGACGTACTGCAGGGCG 60.507 66.667 23.98 23.98 0.00 6.13
2463 2721 4.735132 TGACGTACTGCAGGGCGC 62.735 66.667 25.03 19.20 42.89 6.53
2478 2736 3.357079 CGCAGTTGGGCCACTGAC 61.357 66.667 28.71 17.09 46.29 3.51
2479 2737 2.203337 GCAGTTGGGCCACTGACA 60.203 61.111 28.71 5.60 46.29 3.58
2480 2738 2.263741 GCAGTTGGGCCACTGACAG 61.264 63.158 28.71 15.14 46.29 3.51
2481 2739 1.601759 CAGTTGGGCCACTGACAGG 60.602 63.158 23.45 7.08 46.29 4.00
2482 2740 2.078665 AGTTGGGCCACTGACAGGT 61.079 57.895 5.23 0.00 0.00 4.00
2483 2741 1.898574 GTTGGGCCACTGACAGGTG 60.899 63.158 5.23 2.99 37.00 4.00
2489 2747 4.704833 CACTGACAGGTGGGCCCG 62.705 72.222 19.37 4.81 38.74 6.13
2490 2748 4.954118 ACTGACAGGTGGGCCCGA 62.954 66.667 19.37 3.06 38.74 5.14
2491 2749 3.636231 CTGACAGGTGGGCCCGAA 61.636 66.667 19.37 0.00 38.74 4.30
2492 2750 3.172106 TGACAGGTGGGCCCGAAA 61.172 61.111 19.37 0.00 38.74 3.46
2493 2751 2.359975 GACAGGTGGGCCCGAAAG 60.360 66.667 19.37 10.07 38.74 2.62
2494 2752 4.660938 ACAGGTGGGCCCGAAAGC 62.661 66.667 19.37 9.80 38.74 3.51
2495 2753 4.659172 CAGGTGGGCCCGAAAGCA 62.659 66.667 19.37 0.00 38.74 3.91
2496 2754 3.897122 AGGTGGGCCCGAAAGCAA 61.897 61.111 19.37 0.00 38.74 3.91
2497 2755 3.373565 GGTGGGCCCGAAAGCAAG 61.374 66.667 19.37 0.00 0.00 4.01
2498 2756 2.597510 GTGGGCCCGAAAGCAAGT 60.598 61.111 19.37 0.00 0.00 3.16
2499 2757 2.197324 TGGGCCCGAAAGCAAGTT 59.803 55.556 19.37 0.00 0.00 2.66
2500 2758 2.199652 TGGGCCCGAAAGCAAGTTG 61.200 57.895 19.37 0.00 0.00 3.16
2501 2759 2.650778 GGCCCGAAAGCAAGTTGG 59.349 61.111 4.75 0.00 0.00 3.77
2502 2760 2.049156 GCCCGAAAGCAAGTTGGC 60.049 61.111 4.75 0.00 0.00 4.52
2503 2761 2.650778 CCCGAAAGCAAGTTGGCC 59.349 61.111 4.75 0.00 0.00 5.36
2504 2762 2.650778 CCGAAAGCAAGTTGGCCC 59.349 61.111 0.00 0.00 0.00 5.80
2505 2763 2.199652 CCGAAAGCAAGTTGGCCCA 61.200 57.895 0.00 0.00 0.00 5.36
2506 2764 1.007387 CGAAAGCAAGTTGGCCCAC 60.007 57.895 0.00 0.00 0.00 4.61
2507 2765 1.367471 GAAAGCAAGTTGGCCCACC 59.633 57.895 2.72 0.00 0.00 4.61
2508 2766 1.075301 AAAGCAAGTTGGCCCACCT 60.075 52.632 2.72 0.00 36.63 4.00
2509 2767 1.402107 AAAGCAAGTTGGCCCACCTG 61.402 55.000 2.72 1.84 36.63 4.00
2510 2768 2.521708 GCAAGTTGGCCCACCTGT 60.522 61.111 2.72 0.00 36.63 4.00
2511 2769 2.564721 GCAAGTTGGCCCACCTGTC 61.565 63.158 2.72 0.00 36.63 3.51
2512 2770 1.152777 CAAGTTGGCCCACCTGTCA 60.153 57.895 2.72 0.00 36.63 3.58
2513 2771 1.151450 AAGTTGGCCCACCTGTCAG 59.849 57.895 2.72 0.00 36.63 3.51
2514 2772 1.645402 AAGTTGGCCCACCTGTCAGT 61.645 55.000 2.72 0.00 36.63 3.41
2515 2773 1.898574 GTTGGCCCACCTGTCAGTG 60.899 63.158 0.00 0.00 36.63 3.66
2516 2774 2.075566 TTGGCCCACCTGTCAGTGA 61.076 57.895 0.00 0.00 40.34 3.41
2517 2775 2.032681 GGCCCACCTGTCAGTGAC 59.967 66.667 16.68 16.68 40.34 3.67
2518 2776 2.032681 GCCCACCTGTCAGTGACC 59.967 66.667 20.43 3.45 40.34 4.02
2519 2777 2.750350 CCCACCTGTCAGTGACCC 59.250 66.667 20.43 0.00 40.34 4.46
2520 2778 2.146724 CCCACCTGTCAGTGACCCA 61.147 63.158 20.43 1.94 40.34 4.51
2521 2779 1.705002 CCCACCTGTCAGTGACCCAA 61.705 60.000 20.43 1.10 40.34 4.12
2522 2780 0.535102 CCACCTGTCAGTGACCCAAC 60.535 60.000 20.43 0.00 40.34 3.77
2523 2781 0.469917 CACCTGTCAGTGACCCAACT 59.530 55.000 20.43 0.00 40.34 3.16
2525 2783 0.886490 CCTGTCAGTGACCCAACTGC 60.886 60.000 20.43 0.00 45.93 4.40
2526 2784 1.224069 CTGTCAGTGACCCAACTGCG 61.224 60.000 20.43 0.00 45.93 5.18
2527 2785 2.280797 TCAGTGACCCAACTGCGC 60.281 61.111 0.00 0.00 45.93 6.09
2528 2786 3.357079 CAGTGACCCAACTGCGCC 61.357 66.667 4.18 0.00 41.05 6.53
2529 2787 4.643387 AGTGACCCAACTGCGCCC 62.643 66.667 4.18 0.00 0.00 6.13
2530 2788 4.643387 GTGACCCAACTGCGCCCT 62.643 66.667 4.18 0.00 0.00 5.19
2531 2789 4.641645 TGACCCAACTGCGCCCTG 62.642 66.667 4.18 0.00 0.00 4.45
2541 2799 4.735132 GCGCCCTGCAGTACGTCA 62.735 66.667 21.94 0.00 45.45 4.35
2542 2800 2.507102 CGCCCTGCAGTACGTCAG 60.507 66.667 13.81 9.54 0.00 3.51
2657 2915 7.534239 GTGTGTTTATCAAAGCTTTACTAGTGC 59.466 37.037 12.25 0.00 0.00 4.40
2705 2963 9.907576 CTATTTCTCTAAACGTTCTGCAAATAG 57.092 33.333 0.00 11.90 0.00 1.73
2834 3104 8.553459 AATTGTGTGTCAAGTAGATCCTTAAG 57.447 34.615 0.00 0.00 39.55 1.85
2927 3651 1.524482 CTGCTCCTACCCCTCAAGC 59.476 63.158 0.00 0.00 0.00 4.01
3024 3748 5.039333 GCTGCATTTTTAGAACCAGCATAG 58.961 41.667 5.64 0.00 43.66 2.23
3042 3766 1.927895 AGTCGTCGAATCAGGATTGC 58.072 50.000 0.00 0.00 0.00 3.56
3050 3774 3.055458 TCGAATCAGGATTGCTAACCACA 60.055 43.478 0.00 0.00 0.00 4.17
3215 3939 4.016706 GGGGACGGACACCACCAG 62.017 72.222 0.00 0.00 42.69 4.00
3216 3940 3.239253 GGGACGGACACCACCAGT 61.239 66.667 0.00 0.00 0.00 4.00
3226 3950 4.096003 CCACCAGTGGGGCTACGG 62.096 72.222 15.21 0.00 46.81 4.02
3227 3951 4.096003 CACCAGTGGGGCTACGGG 62.096 72.222 15.21 9.24 42.05 5.28
3309 4033 2.358737 CACACAAGGTCCCGAGCC 60.359 66.667 0.00 0.00 0.00 4.70
3310 4034 4.003788 ACACAAGGTCCCGAGCCG 62.004 66.667 0.00 0.00 0.00 5.52
3311 4035 4.003788 CACAAGGTCCCGAGCCGT 62.004 66.667 0.00 0.00 0.00 5.68
3312 4036 2.283388 ACAAGGTCCCGAGCCGTA 60.283 61.111 0.00 0.00 0.00 4.02
3313 4037 2.348888 ACAAGGTCCCGAGCCGTAG 61.349 63.158 0.00 0.00 0.00 3.51
3314 4038 2.050350 CAAGGTCCCGAGCCGTAGA 61.050 63.158 0.00 0.00 0.00 2.59
3341 4065 3.080121 CCTCGCCCTGCTCCTCTT 61.080 66.667 0.00 0.00 0.00 2.85
3385 4115 1.543941 GATCGCTCGCTCACATTCGG 61.544 60.000 0.00 0.00 0.00 4.30
3388 4118 2.125552 CTCGCTCACATTCGGCCA 60.126 61.111 2.24 0.00 0.00 5.36
3451 4182 4.384647 GGCTAGTCTGATCCAAGGACAAAT 60.385 45.833 0.00 0.00 32.98 2.32
3498 4235 3.503748 GGTGTCATCCTGTCCAAAAGAAG 59.496 47.826 0.00 0.00 0.00 2.85
3504 4241 6.000219 TCATCCTGTCCAAAAGAAGAAGAAG 59.000 40.000 0.00 0.00 0.00 2.85
3522 4259 4.797743 AGAAGAAGAAAAACCCTGCTTCT 58.202 39.130 7.40 7.40 46.64 2.85
3531 4268 2.278332 ACCCTGCTTCTTTCTTGTCC 57.722 50.000 0.00 0.00 0.00 4.02
3630 4367 0.838554 TCATCGGGGTTGGGAGAACA 60.839 55.000 0.00 0.00 0.00 3.18
3664 4401 0.753867 TTTGGCACAGTGGTCTACGA 59.246 50.000 1.84 0.00 42.39 3.43
3677 4414 9.095065 ACAGTGGTCTACGAATAATTTAATGTC 57.905 33.333 0.00 0.00 0.00 3.06
3738 4475 1.000396 ACGGCCGTTAGAGGGTAGT 60.000 57.895 28.70 0.00 0.00 2.73
3800 4537 1.170919 CGGAGGGATGACGTATCGGT 61.171 60.000 0.00 0.00 36.62 4.69
3892 4629 0.323908 AGAGGAAGGCAGAGTAGCGT 60.324 55.000 0.00 0.00 34.64 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 143 1.134640 ACTACAACCGCAACACACAGA 60.135 47.619 0.00 0.00 0.00 3.41
291 292 0.823460 CCCAAATCCACCAAATCCGG 59.177 55.000 0.00 0.00 0.00 5.14
310 311 2.115291 GGAGCGCACCCATTTCCTC 61.115 63.158 13.51 0.00 0.00 3.71
340 342 2.882132 CCCCATTTCGAAACCGCC 59.118 61.111 13.81 0.00 0.00 6.13
357 359 3.839432 CTTCCGTCTCCTCCCCGC 61.839 72.222 0.00 0.00 0.00 6.13
359 361 2.359967 CCACTTCCGTCTCCTCCCC 61.360 68.421 0.00 0.00 0.00 4.81
369 371 1.198759 TTTCTCCCTCCCCACTTCCG 61.199 60.000 0.00 0.00 0.00 4.30
384 386 1.363246 GGGTCCCTCCAGTTCTTTCT 58.637 55.000 0.00 0.00 38.11 2.52
386 388 2.067197 CGGGTCCCTCCAGTTCTTT 58.933 57.895 6.29 0.00 38.11 2.52
549 564 6.934645 ACAGCTGTGCTAATTAGTCTTACAAA 59.065 34.615 20.97 0.00 36.40 2.83
550 565 6.464222 ACAGCTGTGCTAATTAGTCTTACAA 58.536 36.000 20.97 1.06 36.40 2.41
561 576 6.238648 ACCTAAAAAGTACAGCTGTGCTAAT 58.761 36.000 33.50 23.46 40.09 1.73
596 611 8.968969 AGAGAAAGAGTACATACGAGGTTTATT 58.031 33.333 0.00 0.00 0.00 1.40
597 612 8.522542 AGAGAAAGAGTACATACGAGGTTTAT 57.477 34.615 0.00 0.00 0.00 1.40
598 613 7.934855 AGAGAAAGAGTACATACGAGGTTTA 57.065 36.000 0.00 0.00 0.00 2.01
599 614 6.837471 AGAGAAAGAGTACATACGAGGTTT 57.163 37.500 0.00 0.00 0.00 3.27
600 615 7.934855 TTAGAGAAAGAGTACATACGAGGTT 57.065 36.000 0.00 0.00 0.00 3.50
601 616 7.934855 TTTAGAGAAAGAGTACATACGAGGT 57.065 36.000 0.00 0.00 0.00 3.85
602 617 8.460428 AGTTTTAGAGAAAGAGTACATACGAGG 58.540 37.037 0.00 0.00 0.00 4.63
609 624 9.257651 GCTGTTTAGTTTTAGAGAAAGAGTACA 57.742 33.333 0.00 0.00 0.00 2.90
610 625 8.710551 GGCTGTTTAGTTTTAGAGAAAGAGTAC 58.289 37.037 0.00 0.00 0.00 2.73
611 626 7.876582 GGGCTGTTTAGTTTTAGAGAAAGAGTA 59.123 37.037 0.00 0.00 0.00 2.59
612 627 6.711194 GGGCTGTTTAGTTTTAGAGAAAGAGT 59.289 38.462 0.00 0.00 0.00 3.24
626 641 1.208776 GTATGGGTCGGGCTGTTTAGT 59.791 52.381 0.00 0.00 0.00 2.24
627 642 1.485066 AGTATGGGTCGGGCTGTTTAG 59.515 52.381 0.00 0.00 0.00 1.85
647 662 4.685924 CGTAGGGCTCGGTAAAAAGAATA 58.314 43.478 0.00 0.00 0.00 1.75
653 668 0.538118 ATGCGTAGGGCTCGGTAAAA 59.462 50.000 0.00 0.00 44.05 1.52
659 674 2.871427 GCGAAATGCGTAGGGCTCG 61.871 63.158 0.00 0.00 44.05 5.03
660 675 3.014856 GCGAAATGCGTAGGGCTC 58.985 61.111 0.00 0.00 44.05 4.70
689 704 1.005748 GTTTTGCCTGCCTGCCTTC 60.006 57.895 0.00 0.00 0.00 3.46
692 707 2.341176 CAGTTTTGCCTGCCTGCC 59.659 61.111 0.00 0.00 0.00 4.85
702 717 0.667993 TGCTCCCTTTCGCAGTTTTG 59.332 50.000 0.00 0.00 0.00 2.44
703 718 1.398692 TTGCTCCCTTTCGCAGTTTT 58.601 45.000 0.00 0.00 37.46 2.43
704 719 1.338020 CTTTGCTCCCTTTCGCAGTTT 59.662 47.619 0.00 0.00 37.46 2.66
705 720 0.954452 CTTTGCTCCCTTTCGCAGTT 59.046 50.000 0.00 0.00 37.46 3.16
711 726 0.961753 CACCACCTTTGCTCCCTTTC 59.038 55.000 0.00 0.00 0.00 2.62
763 778 2.224549 CCTTTTTGTATCAACGGTCGCA 59.775 45.455 0.00 0.00 0.00 5.10
858 875 3.422303 TGCTTCGGTGTGCGATGC 61.422 61.111 0.00 0.00 37.15 3.91
870 887 3.050275 GGTGCGGGAGTGTGCTTC 61.050 66.667 0.00 0.00 0.00 3.86
885 903 3.637273 GAGAGTGGCAACGGGGGT 61.637 66.667 0.00 0.00 42.51 4.95
886 904 4.410400 GGAGAGTGGCAACGGGGG 62.410 72.222 0.00 0.00 42.51 5.40
887 905 4.760047 CGGAGAGTGGCAACGGGG 62.760 72.222 0.00 0.00 42.51 5.73
890 908 2.811317 GAGCGGAGAGTGGCAACG 60.811 66.667 0.00 0.00 42.51 4.10
891 909 2.435059 GGAGCGGAGAGTGGCAAC 60.435 66.667 0.00 0.00 0.00 4.17
895 913 3.151022 GAGGGGAGCGGAGAGTGG 61.151 72.222 0.00 0.00 0.00 4.00
897 915 3.351885 AGGAGGGGAGCGGAGAGT 61.352 66.667 0.00 0.00 0.00 3.24
902 950 4.888325 ATGGGAGGAGGGGAGCGG 62.888 72.222 0.00 0.00 0.00 5.52
904 952 1.841103 GAGATGGGAGGAGGGGAGC 60.841 68.421 0.00 0.00 0.00 4.70
955 1003 2.347322 GGAGAGCGCTGTGGAGAGT 61.347 63.158 18.48 0.00 0.00 3.24
964 1012 3.146913 GGAGCAGAGGAGAGCGCT 61.147 66.667 11.27 11.27 37.44 5.92
972 1020 3.080121 AGAAGGCCGGAGCAGAGG 61.080 66.667 5.05 0.00 42.56 3.69
976 1024 3.393970 CTGGAGAAGGCCGGAGCA 61.394 66.667 5.05 0.00 42.56 4.26
978 1026 3.080121 AGCTGGAGAAGGCCGGAG 61.080 66.667 5.05 0.00 36.35 4.63
979 1027 3.077556 GAGCTGGAGAAGGCCGGA 61.078 66.667 5.05 0.00 36.35 5.14
980 1028 4.521062 CGAGCTGGAGAAGGCCGG 62.521 72.222 0.00 0.00 37.37 6.13
982 1030 4.847444 GGCGAGCTGGAGAAGGCC 62.847 72.222 0.00 0.00 0.00 5.19
983 1031 3.397613 ATGGCGAGCTGGAGAAGGC 62.398 63.158 0.00 0.00 0.00 4.35
984 1032 1.523258 CATGGCGAGCTGGAGAAGG 60.523 63.158 0.00 0.00 0.00 3.46
985 1033 1.523258 CCATGGCGAGCTGGAGAAG 60.523 63.158 0.00 0.00 34.24 2.85
1127 1176 7.170658 GGAGTCTTTGCTTATTATAGACTGCTG 59.829 40.741 12.78 0.00 45.28 4.41
1168 1217 2.553028 GCTCCAGATGTCAAACTTCCCA 60.553 50.000 0.00 0.00 0.00 4.37
1169 1218 2.087646 GCTCCAGATGTCAAACTTCCC 58.912 52.381 0.00 0.00 0.00 3.97
1170 1219 2.087646 GGCTCCAGATGTCAAACTTCC 58.912 52.381 0.00 0.00 0.00 3.46
1171 1220 1.734465 CGGCTCCAGATGTCAAACTTC 59.266 52.381 0.00 0.00 0.00 3.01
1172 1221 1.072331 ACGGCTCCAGATGTCAAACTT 59.928 47.619 0.00 0.00 0.00 2.66
1173 1222 0.687354 ACGGCTCCAGATGTCAAACT 59.313 50.000 0.00 0.00 0.00 2.66
1174 1223 1.079503 GACGGCTCCAGATGTCAAAC 58.920 55.000 0.00 0.00 0.00 2.93
1175 1224 0.389817 CGACGGCTCCAGATGTCAAA 60.390 55.000 0.00 0.00 0.00 2.69
1176 1225 1.215382 CGACGGCTCCAGATGTCAA 59.785 57.895 0.00 0.00 0.00 3.18
1177 1226 2.710902 CCGACGGCTCCAGATGTCA 61.711 63.158 0.00 0.00 0.00 3.58
1178 1227 2.105128 CCGACGGCTCCAGATGTC 59.895 66.667 0.00 0.00 0.00 3.06
1179 1228 2.680352 ACCGACGGCTCCAGATGT 60.680 61.111 15.39 0.00 0.00 3.06
1180 1229 2.202797 CACCGACGGCTCCAGATG 60.203 66.667 15.39 0.00 0.00 2.90
1181 1230 4.148825 GCACCGACGGCTCCAGAT 62.149 66.667 15.39 0.00 0.00 2.90
1183 1232 4.379243 AAGCACCGACGGCTCCAG 62.379 66.667 15.39 0.00 41.66 3.86
1184 1233 4.373116 GAAGCACCGACGGCTCCA 62.373 66.667 15.39 0.00 41.66 3.86
1185 1234 3.991536 GAGAAGCACCGACGGCTCC 62.992 68.421 15.39 2.02 41.66 4.70
1186 1235 2.493907 AAGAGAAGCACCGACGGCTC 62.494 60.000 15.39 11.94 41.66 4.70
1187 1236 2.493907 GAAGAGAAGCACCGACGGCT 62.494 60.000 15.39 2.80 45.15 5.52
1188 1237 2.048127 AAGAGAAGCACCGACGGC 60.048 61.111 15.39 0.00 0.00 5.68
1189 1238 0.734253 CTGAAGAGAAGCACCGACGG 60.734 60.000 13.61 13.61 0.00 4.79
1190 1239 1.347817 GCTGAAGAGAAGCACCGACG 61.348 60.000 0.00 0.00 40.52 5.12
1198 1247 2.992543 CACCGAAGAAGCTGAAGAGAAG 59.007 50.000 0.00 0.00 0.00 2.85
1221 1270 0.894141 AGTGCAGTGGCTCTAGACAG 59.106 55.000 0.00 0.00 41.75 3.51
1258 1307 3.565307 ACACCATTCTGCTGGAGAAAAA 58.435 40.909 15.62 0.00 44.11 1.94
1259 1308 3.228188 ACACCATTCTGCTGGAGAAAA 57.772 42.857 15.62 0.00 44.11 2.29
1260 1309 2.957402 ACACCATTCTGCTGGAGAAA 57.043 45.000 15.62 0.00 44.11 2.52
1261 1310 2.355108 GCTACACCATTCTGCTGGAGAA 60.355 50.000 14.07 14.07 45.03 2.87
1262 1311 1.208052 GCTACACCATTCTGCTGGAGA 59.792 52.381 0.00 0.00 39.73 3.71
1263 1312 1.065926 TGCTACACCATTCTGCTGGAG 60.066 52.381 0.00 0.00 39.73 3.86
1264 1313 0.983467 TGCTACACCATTCTGCTGGA 59.017 50.000 0.00 0.00 39.73 3.86
1269 1318 3.865446 TCATCAGTGCTACACCATTCTG 58.135 45.455 0.00 0.00 34.49 3.02
1270 1319 4.162888 TCATCATCAGTGCTACACCATTCT 59.837 41.667 0.00 0.00 34.49 2.40
1276 1325 5.583854 ACAAGAATCATCATCAGTGCTACAC 59.416 40.000 0.00 0.00 34.10 2.90
1281 1330 9.608617 CATTATAACAAGAATCATCATCAGTGC 57.391 33.333 0.00 0.00 0.00 4.40
1293 1342 8.408601 GCCACTGATGAACATTATAACAAGAAT 58.591 33.333 0.00 0.00 0.00 2.40
1304 1353 6.066690 AGCATAATAGCCACTGATGAACATT 58.933 36.000 0.00 0.00 34.23 2.71
1305 1354 5.628130 AGCATAATAGCCACTGATGAACAT 58.372 37.500 0.00 0.00 34.23 2.71
1306 1355 5.039920 AGCATAATAGCCACTGATGAACA 57.960 39.130 0.00 0.00 34.23 3.18
1307 1356 5.528690 TCAAGCATAATAGCCACTGATGAAC 59.471 40.000 0.00 0.00 34.23 3.18
1318 1373 9.962783 ATCTTTTGATCTTTCAAGCATAATAGC 57.037 29.630 0.00 0.00 42.60 2.97
1422 1480 2.403561 AGTGGGAGAAGGGAATCTAGC 58.596 52.381 0.00 0.00 0.00 3.42
1618 1691 1.530013 ATTGGCACCTTGCTGACAGC 61.530 55.000 20.86 20.86 44.28 4.40
1619 1692 0.242825 CATTGGCACCTTGCTGACAG 59.757 55.000 0.00 0.00 44.28 3.51
1620 1693 1.180456 CCATTGGCACCTTGCTGACA 61.180 55.000 0.00 0.00 44.28 3.58
1621 1694 0.895100 TCCATTGGCACCTTGCTGAC 60.895 55.000 0.00 0.00 44.28 3.51
1622 1695 0.178967 TTCCATTGGCACCTTGCTGA 60.179 50.000 0.00 0.00 44.28 4.26
1623 1696 0.680618 TTTCCATTGGCACCTTGCTG 59.319 50.000 0.00 0.00 44.28 4.41
1624 1697 0.971386 CTTTCCATTGGCACCTTGCT 59.029 50.000 0.00 0.00 44.28 3.91
1625 1698 0.671472 GCTTTCCATTGGCACCTTGC 60.671 55.000 0.00 0.00 44.08 4.01
1626 1699 0.680618 TGCTTTCCATTGGCACCTTG 59.319 50.000 0.00 0.00 0.00 3.61
1627 1700 1.648116 ATGCTTTCCATTGGCACCTT 58.352 45.000 0.00 0.00 38.83 3.50
1628 1701 1.551883 GAATGCTTTCCATTGGCACCT 59.448 47.619 0.00 0.00 44.02 4.00
1629 1702 1.275856 TGAATGCTTTCCATTGGCACC 59.724 47.619 9.63 0.00 44.02 5.01
1630 1703 2.288948 TGTGAATGCTTTCCATTGGCAC 60.289 45.455 9.63 0.00 44.02 5.01
1631 1704 1.969208 TGTGAATGCTTTCCATTGGCA 59.031 42.857 9.63 0.00 44.02 4.92
1632 1705 2.738314 GTTGTGAATGCTTTCCATTGGC 59.262 45.455 9.63 0.00 44.02 4.52
1633 1706 3.007182 AGGTTGTGAATGCTTTCCATTGG 59.993 43.478 9.63 0.00 44.02 3.16
1634 1707 4.261578 AGGTTGTGAATGCTTTCCATTG 57.738 40.909 9.63 0.00 44.02 2.82
1635 1708 4.961438 AAGGTTGTGAATGCTTTCCATT 57.039 36.364 9.63 0.00 46.57 3.16
1636 1709 4.961438 AAAGGTTGTGAATGCTTTCCAT 57.039 36.364 9.63 0.00 35.06 3.41
1637 1710 5.538053 TGATAAAGGTTGTGAATGCTTTCCA 59.462 36.000 9.63 4.98 0.00 3.53
1638 1711 6.024552 TGATAAAGGTTGTGAATGCTTTCC 57.975 37.500 9.63 2.64 0.00 3.13
1639 1712 6.095377 CCTGATAAAGGTTGTGAATGCTTTC 58.905 40.000 5.41 5.41 41.74 2.62
1640 1713 6.029346 CCTGATAAAGGTTGTGAATGCTTT 57.971 37.500 0.00 0.00 41.74 3.51
1641 1714 5.649782 CCTGATAAAGGTTGTGAATGCTT 57.350 39.130 0.00 0.00 41.74 3.91
1654 1727 8.037758 AGAACGGAATATATGCTCCTGATAAAG 58.962 37.037 2.65 0.00 0.00 1.85
1655 1728 7.907389 AGAACGGAATATATGCTCCTGATAAA 58.093 34.615 2.65 0.00 0.00 1.40
1656 1729 7.482169 AGAACGGAATATATGCTCCTGATAA 57.518 36.000 2.65 0.00 0.00 1.75
1657 1730 7.482169 AAGAACGGAATATATGCTCCTGATA 57.518 36.000 2.65 0.00 0.00 2.15
1658 1731 6.365970 AAGAACGGAATATATGCTCCTGAT 57.634 37.500 2.65 0.00 0.00 2.90
1659 1732 5.808366 AAGAACGGAATATATGCTCCTGA 57.192 39.130 2.65 0.00 0.00 3.86
1660 1733 6.226787 AGAAAGAACGGAATATATGCTCCTG 58.773 40.000 2.65 0.00 0.00 3.86
1661 1734 6.426646 AGAAAGAACGGAATATATGCTCCT 57.573 37.500 2.65 0.00 0.00 3.69
1662 1735 7.442666 AGAAAGAAAGAACGGAATATATGCTCC 59.557 37.037 0.00 0.00 0.00 4.70
1663 1736 8.371770 AGAAAGAAAGAACGGAATATATGCTC 57.628 34.615 0.00 0.00 0.00 4.26
1664 1737 8.738645 AAGAAAGAAAGAACGGAATATATGCT 57.261 30.769 0.00 0.00 0.00 3.79
1665 1738 9.226345 CAAAGAAAGAAAGAACGGAATATATGC 57.774 33.333 0.00 0.00 0.00 3.14
1666 1739 9.226345 GCAAAGAAAGAAAGAACGGAATATATG 57.774 33.333 0.00 0.00 0.00 1.78
1667 1740 9.178758 AGCAAAGAAAGAAAGAACGGAATATAT 57.821 29.630 0.00 0.00 0.00 0.86
1668 1741 8.450964 CAGCAAAGAAAGAAAGAACGGAATATA 58.549 33.333 0.00 0.00 0.00 0.86
1669 1742 7.040409 ACAGCAAAGAAAGAAAGAACGGAATAT 60.040 33.333 0.00 0.00 0.00 1.28
1670 1743 6.262273 ACAGCAAAGAAAGAAAGAACGGAATA 59.738 34.615 0.00 0.00 0.00 1.75
1671 1744 5.067805 ACAGCAAAGAAAGAAAGAACGGAAT 59.932 36.000 0.00 0.00 0.00 3.01
1672 1745 4.398044 ACAGCAAAGAAAGAAAGAACGGAA 59.602 37.500 0.00 0.00 0.00 4.30
1673 1746 3.945285 ACAGCAAAGAAAGAAAGAACGGA 59.055 39.130 0.00 0.00 0.00 4.69
1674 1747 4.201910 TGACAGCAAAGAAAGAAAGAACGG 60.202 41.667 0.00 0.00 0.00 4.44
1675 1748 4.908736 TGACAGCAAAGAAAGAAAGAACG 58.091 39.130 0.00 0.00 0.00 3.95
1676 1749 4.737279 GCTGACAGCAAAGAAAGAAAGAAC 59.263 41.667 22.62 0.00 41.89 3.01
1677 1750 4.925068 GCTGACAGCAAAGAAAGAAAGAA 58.075 39.130 22.62 0.00 41.89 2.52
1678 1751 4.558538 GCTGACAGCAAAGAAAGAAAGA 57.441 40.909 22.62 0.00 41.89 2.52
1691 1764 1.530013 ATTGGCACCTTGCTGACAGC 61.530 55.000 20.86 20.86 44.28 4.40
1692 1765 0.242825 CATTGGCACCTTGCTGACAG 59.757 55.000 0.00 0.00 44.28 3.51
1693 1766 1.180456 CCATTGGCACCTTGCTGACA 61.180 55.000 0.00 0.00 44.28 3.58
1694 1767 0.895100 TCCATTGGCACCTTGCTGAC 60.895 55.000 0.00 0.00 44.28 3.51
1695 1768 0.178967 TTCCATTGGCACCTTGCTGA 60.179 50.000 0.00 0.00 44.28 4.26
1696 1769 0.680618 TTTCCATTGGCACCTTGCTG 59.319 50.000 0.00 0.00 44.28 4.41
1697 1770 0.971386 CTTTCCATTGGCACCTTGCT 59.029 50.000 0.00 0.00 44.28 3.91
1698 1771 0.671472 GCTTTCCATTGGCACCTTGC 60.671 55.000 0.00 0.00 44.08 4.01
1699 1772 0.680618 TGCTTTCCATTGGCACCTTG 59.319 50.000 0.00 0.00 0.00 3.61
1700 1773 1.648116 ATGCTTTCCATTGGCACCTT 58.352 45.000 0.00 0.00 38.83 3.50
1701 1774 1.551883 GAATGCTTTCCATTGGCACCT 59.448 47.619 0.00 0.00 44.02 4.00
1702 1775 1.275856 TGAATGCTTTCCATTGGCACC 59.724 47.619 9.63 0.00 44.02 5.01
1703 1776 2.288948 TGTGAATGCTTTCCATTGGCAC 60.289 45.455 9.63 0.00 44.02 5.01
1704 1777 1.969208 TGTGAATGCTTTCCATTGGCA 59.031 42.857 9.63 0.00 44.02 4.92
1705 1778 2.738314 GTTGTGAATGCTTTCCATTGGC 59.262 45.455 9.63 0.00 44.02 4.52
1706 1779 3.007182 AGGTTGTGAATGCTTTCCATTGG 59.993 43.478 9.63 0.00 44.02 3.16
1707 1780 4.261578 AGGTTGTGAATGCTTTCCATTG 57.738 40.909 9.63 0.00 44.02 2.82
1708 1781 4.961438 AAGGTTGTGAATGCTTTCCATT 57.039 36.364 9.63 0.00 46.57 3.16
1709 1782 4.961438 AAAGGTTGTGAATGCTTTCCAT 57.039 36.364 9.63 0.00 35.06 3.41
1710 1783 5.538053 TGATAAAGGTTGTGAATGCTTTCCA 59.462 36.000 9.63 4.98 0.00 3.53
1711 1784 6.024552 TGATAAAGGTTGTGAATGCTTTCC 57.975 37.500 9.63 2.64 0.00 3.13
1712 1785 6.095377 CCTGATAAAGGTTGTGAATGCTTTC 58.905 40.000 5.41 5.41 41.74 2.62
1713 1786 6.029346 CCTGATAAAGGTTGTGAATGCTTT 57.971 37.500 0.00 0.00 41.74 3.51
1714 1787 5.649782 CCTGATAAAGGTTGTGAATGCTT 57.350 39.130 0.00 0.00 41.74 3.91
1727 1800 8.037758 AGAACGGAATATATGCTCCTGATAAAG 58.962 37.037 2.65 0.00 0.00 1.85
1728 1801 7.907389 AGAACGGAATATATGCTCCTGATAAA 58.093 34.615 2.65 0.00 0.00 1.40
1729 1802 7.482169 AGAACGGAATATATGCTCCTGATAA 57.518 36.000 2.65 0.00 0.00 1.75
1730 1803 7.482169 AAGAACGGAATATATGCTCCTGATA 57.518 36.000 2.65 0.00 0.00 2.15
1731 1804 6.365970 AAGAACGGAATATATGCTCCTGAT 57.634 37.500 2.65 0.00 0.00 2.90
1732 1805 5.808366 AAGAACGGAATATATGCTCCTGA 57.192 39.130 2.65 0.00 0.00 3.86
1733 1806 6.226787 AGAAAGAACGGAATATATGCTCCTG 58.773 40.000 2.65 0.00 0.00 3.86
1734 1807 6.426646 AGAAAGAACGGAATATATGCTCCT 57.573 37.500 2.65 0.00 0.00 3.69
1735 1808 7.442666 AGAAAGAAAGAACGGAATATATGCTCC 59.557 37.037 0.00 0.00 0.00 4.70
1736 1809 8.371770 AGAAAGAAAGAACGGAATATATGCTC 57.628 34.615 0.00 0.00 0.00 4.26
1737 1810 8.738645 AAGAAAGAAAGAACGGAATATATGCT 57.261 30.769 0.00 0.00 0.00 3.79
1738 1811 9.226345 CAAAGAAAGAAAGAACGGAATATATGC 57.774 33.333 0.00 0.00 0.00 3.14
1739 1812 9.226345 GCAAAGAAAGAAAGAACGGAATATATG 57.774 33.333 0.00 0.00 0.00 1.78
1740 1813 9.178758 AGCAAAGAAAGAAAGAACGGAATATAT 57.821 29.630 0.00 0.00 0.00 0.86
1741 1814 8.450964 CAGCAAAGAAAGAAAGAACGGAATATA 58.549 33.333 0.00 0.00 0.00 0.86
1742 1815 7.040409 ACAGCAAAGAAAGAAAGAACGGAATAT 60.040 33.333 0.00 0.00 0.00 1.28
1743 1816 6.262273 ACAGCAAAGAAAGAAAGAACGGAATA 59.738 34.615 0.00 0.00 0.00 1.75
1744 1817 5.067805 ACAGCAAAGAAAGAAAGAACGGAAT 59.932 36.000 0.00 0.00 0.00 3.01
1745 1818 4.398044 ACAGCAAAGAAAGAAAGAACGGAA 59.602 37.500 0.00 0.00 0.00 4.30
1746 1819 3.945285 ACAGCAAAGAAAGAAAGAACGGA 59.055 39.130 0.00 0.00 0.00 4.69
1747 1820 4.201910 TGACAGCAAAGAAAGAAAGAACGG 60.202 41.667 0.00 0.00 0.00 4.44
1748 1821 4.908736 TGACAGCAAAGAAAGAAAGAACG 58.091 39.130 0.00 0.00 0.00 3.95
1749 1822 4.737279 GCTGACAGCAAAGAAAGAAAGAAC 59.263 41.667 22.62 0.00 41.89 3.01
1816 2028 3.334583 AAAGCAGCACGGAGATAAGAA 57.665 42.857 0.00 0.00 0.00 2.52
1825 2037 0.311790 ATGTGACAAAAGCAGCACGG 59.688 50.000 0.00 0.00 34.12 4.94
1850 2062 7.448161 TCAGTTTCTTCTCTTGAAATTATGGCA 59.552 33.333 0.00 0.00 36.10 4.92
1878 2099 1.172812 AGGAAAGCTGGTGCGTTTCC 61.173 55.000 16.57 16.57 45.69 3.13
1925 2168 0.394899 GGTCAAATGGCTGGGAGGAG 60.395 60.000 0.00 0.00 0.00 3.69
1926 2169 0.846427 AGGTCAAATGGCTGGGAGGA 60.846 55.000 0.00 0.00 0.00 3.71
1927 2170 0.394899 GAGGTCAAATGGCTGGGAGG 60.395 60.000 0.00 0.00 0.00 4.30
1957 2204 2.799412 CAAGATCAGTTATCAGCGGAGC 59.201 50.000 0.00 0.00 43.36 4.70
1958 2205 3.388308 CCAAGATCAGTTATCAGCGGAG 58.612 50.000 0.00 0.00 37.03 4.63
1962 2209 2.290093 GCAGCCAAGATCAGTTATCAGC 59.710 50.000 0.00 0.00 37.03 4.26
2286 2540 0.690192 TCTTGAACCGGAATGCAGGA 59.310 50.000 9.46 3.30 33.18 3.86
2369 2623 4.704540 ACCAGAGTGACAGATCTTCTACAG 59.295 45.833 0.00 0.00 0.00 2.74
2378 2632 8.001875 ACAGTAATATAGACCAGAGTGACAGAT 58.998 37.037 0.00 0.00 0.00 2.90
2432 2690 2.041115 CGTCAGAGGAGCCTCGTCA 61.041 63.158 16.09 0.00 46.90 4.35
2433 2691 0.743701 TACGTCAGAGGAGCCTCGTC 60.744 60.000 10.69 6.30 46.90 4.20
2435 2693 0.745128 AGTACGTCAGAGGAGCCTCG 60.745 60.000 10.69 6.49 46.90 4.63
2436 2694 0.736053 CAGTACGTCAGAGGAGCCTC 59.264 60.000 8.50 8.50 43.03 4.70
2438 2696 1.139947 GCAGTACGTCAGAGGAGCC 59.860 63.158 0.00 0.00 0.00 4.70
2439 2697 0.179150 CTGCAGTACGTCAGAGGAGC 60.179 60.000 5.25 0.00 32.26 4.70
2440 2698 0.453793 CCTGCAGTACGTCAGAGGAG 59.546 60.000 13.81 0.00 32.26 3.69
2441 2699 0.965866 CCCTGCAGTACGTCAGAGGA 60.966 60.000 13.81 0.00 32.26 3.71
2442 2700 1.513158 CCCTGCAGTACGTCAGAGG 59.487 63.158 13.81 12.06 32.26 3.69
2443 2701 1.153745 GCCCTGCAGTACGTCAGAG 60.154 63.158 13.81 6.74 32.26 3.35
2444 2702 2.970639 GCCCTGCAGTACGTCAGA 59.029 61.111 13.81 0.00 32.26 3.27
2445 2703 2.507102 CGCCCTGCAGTACGTCAG 60.507 66.667 13.81 9.54 0.00 3.51
2446 2704 4.735132 GCGCCCTGCAGTACGTCA 62.735 66.667 21.94 0.00 45.45 4.35
2461 2719 3.357079 GTCAGTGGCCCAACTGCG 61.357 66.667 16.60 0.00 45.93 5.18
2462 2720 2.203337 TGTCAGTGGCCCAACTGC 60.203 61.111 16.60 12.53 45.93 4.40
2464 2722 2.078665 ACCTGTCAGTGGCCCAACT 61.079 57.895 0.00 0.00 0.00 3.16
2465 2723 1.898574 CACCTGTCAGTGGCCCAAC 60.899 63.158 0.00 0.00 33.95 3.77
2466 2724 2.515398 CACCTGTCAGTGGCCCAA 59.485 61.111 0.00 0.00 33.95 4.12
2472 2730 4.704833 CGGGCCCACCTGTCAGTG 62.705 72.222 24.92 0.00 37.57 3.66
2473 2731 4.954118 TCGGGCCCACCTGTCAGT 62.954 66.667 24.92 0.00 43.58 3.41
2474 2732 3.190738 TTTCGGGCCCACCTGTCAG 62.191 63.158 24.92 1.98 43.58 3.51
2475 2733 3.172106 TTTCGGGCCCACCTGTCA 61.172 61.111 24.92 0.00 43.58 3.58
2476 2734 2.359975 CTTTCGGGCCCACCTGTC 60.360 66.667 24.92 0.00 43.58 3.51
2477 2735 4.660938 GCTTTCGGGCCCACCTGT 62.661 66.667 24.92 0.00 43.58 4.00
2478 2736 4.659172 TGCTTTCGGGCCCACCTG 62.659 66.667 24.92 10.12 44.63 4.00
2479 2737 3.868200 CTTGCTTTCGGGCCCACCT 62.868 63.158 24.92 0.00 36.97 4.00
2480 2738 3.373565 CTTGCTTTCGGGCCCACC 61.374 66.667 24.92 4.81 0.00 4.61
2481 2739 2.200337 AACTTGCTTTCGGGCCCAC 61.200 57.895 24.92 5.64 0.00 4.61
2482 2740 2.197324 AACTTGCTTTCGGGCCCA 59.803 55.556 24.92 6.15 0.00 5.36
2483 2741 2.650778 CAACTTGCTTTCGGGCCC 59.349 61.111 13.57 13.57 0.00 5.80
2484 2742 2.650778 CCAACTTGCTTTCGGGCC 59.349 61.111 0.00 0.00 0.00 5.80
2485 2743 2.049156 GCCAACTTGCTTTCGGGC 60.049 61.111 0.00 0.00 0.00 6.13
2486 2744 2.650778 GGCCAACTTGCTTTCGGG 59.349 61.111 0.00 0.00 0.00 5.14
2487 2745 2.199652 TGGGCCAACTTGCTTTCGG 61.200 57.895 2.13 0.00 0.00 4.30
2488 2746 1.007387 GTGGGCCAACTTGCTTTCG 60.007 57.895 8.40 0.00 0.00 3.46
2489 2747 1.115326 AGGTGGGCCAACTTGCTTTC 61.115 55.000 21.01 0.00 37.19 2.62
2490 2748 1.075301 AGGTGGGCCAACTTGCTTT 60.075 52.632 21.01 0.00 37.19 3.51
2491 2749 1.833934 CAGGTGGGCCAACTTGCTT 60.834 57.895 24.60 0.00 37.19 3.91
2492 2750 2.203538 CAGGTGGGCCAACTTGCT 60.204 61.111 24.60 0.00 37.19 3.91
2493 2751 2.521708 ACAGGTGGGCCAACTTGC 60.522 61.111 24.60 0.90 37.19 4.01
2494 2752 1.152777 TGACAGGTGGGCCAACTTG 60.153 57.895 24.60 20.50 37.19 3.16
2495 2753 1.151450 CTGACAGGTGGGCCAACTT 59.849 57.895 24.60 13.86 37.19 2.66
2496 2754 2.078665 ACTGACAGGTGGGCCAACT 61.079 57.895 21.01 21.01 37.19 3.16
2497 2755 1.898574 CACTGACAGGTGGGCCAAC 60.899 63.158 15.52 15.52 37.19 3.77
2498 2756 2.075566 TCACTGACAGGTGGGCCAA 61.076 57.895 8.40 0.00 37.75 4.52
2499 2757 2.447572 TCACTGACAGGTGGGCCA 60.448 61.111 0.00 0.00 37.75 5.36
2500 2758 2.032681 GTCACTGACAGGTGGGCC 59.967 66.667 7.51 0.00 37.75 5.80
2501 2759 2.032681 GGTCACTGACAGGTGGGC 59.967 66.667 11.34 0.00 37.75 5.36
2502 2760 1.705002 TTGGGTCACTGACAGGTGGG 61.705 60.000 11.34 0.00 37.75 4.61
2503 2761 0.535102 GTTGGGTCACTGACAGGTGG 60.535 60.000 11.34 0.00 37.75 4.61
2504 2762 0.469917 AGTTGGGTCACTGACAGGTG 59.530 55.000 11.34 3.26 38.44 4.00
2505 2763 0.469917 CAGTTGGGTCACTGACAGGT 59.530 55.000 11.34 0.00 46.29 4.00
2506 2764 0.886490 GCAGTTGGGTCACTGACAGG 60.886 60.000 11.34 0.00 46.29 4.00
2507 2765 1.224069 CGCAGTTGGGTCACTGACAG 61.224 60.000 11.34 0.00 46.29 3.51
2508 2766 1.227527 CGCAGTTGGGTCACTGACA 60.228 57.895 11.34 0.00 46.29 3.58
2509 2767 2.607892 GCGCAGTTGGGTCACTGAC 61.608 63.158 0.30 0.00 46.29 3.51
2510 2768 2.280797 GCGCAGTTGGGTCACTGA 60.281 61.111 0.30 0.00 46.29 3.41
2511 2769 3.357079 GGCGCAGTTGGGTCACTG 61.357 66.667 10.83 0.00 46.15 3.66
2512 2770 4.643387 GGGCGCAGTTGGGTCACT 62.643 66.667 10.83 0.00 33.95 3.41
2513 2771 4.643387 AGGGCGCAGTTGGGTCAC 62.643 66.667 10.83 0.00 33.95 3.67
2514 2772 4.641645 CAGGGCGCAGTTGGGTCA 62.642 66.667 10.83 0.00 33.95 4.02
2524 2782 4.735132 TGACGTACTGCAGGGCGC 62.735 66.667 25.03 19.20 42.89 6.53
2525 2783 2.507102 CTGACGTACTGCAGGGCG 60.507 66.667 23.98 23.98 0.00 6.13
2526 2784 2.125512 CCTGACGTACTGCAGGGC 60.126 66.667 19.93 9.18 46.24 5.19
2529 2787 2.579201 CCCCCTGACGTACTGCAG 59.421 66.667 13.48 13.48 0.00 4.41
2543 2801 2.875672 GCAATTTCCTTTTCTTGCCCCC 60.876 50.000 0.00 0.00 38.39 5.40
2544 2802 2.426522 GCAATTTCCTTTTCTTGCCCC 58.573 47.619 0.00 0.00 38.39 5.80
2572 2830 3.906720 TTGCAAGTATGGAGGGAGTAC 57.093 47.619 0.00 0.00 0.00 2.73
2657 2915 8.912787 ATAGACACGACAGTTTTACTCATAAG 57.087 34.615 0.00 0.00 0.00 1.73
2729 2987 9.686683 ATCAGTAGCACTTAAGTATCCAAAATT 57.313 29.630 8.04 0.00 0.00 1.82
2803 3073 8.870879 GGATCTACTTGACACACAATTAAGTAC 58.129 37.037 0.00 0.00 37.88 2.73
2834 3104 8.897752 ACTCAAGAATCCAAATAGAAATAGCAC 58.102 33.333 0.00 0.00 0.00 4.40
2873 3595 3.979101 TGTGAGCAAGACCATGATACA 57.021 42.857 0.00 0.00 0.00 2.29
2874 3596 3.003068 GCATGTGAGCAAGACCATGATAC 59.997 47.826 0.00 0.00 37.47 2.24
2927 3651 5.867716 AGAAGTAACAATGTAGTACCTTGCG 59.132 40.000 15.71 0.00 28.56 4.85
2966 3690 5.909477 CAATCGGTTGGTATTGGAGTAGTA 58.091 41.667 0.00 0.00 30.93 1.82
3024 3748 1.927895 AGCAATCCTGATTCGACGAC 58.072 50.000 0.00 0.00 0.00 4.34
3042 3766 7.012327 TGTGATGAAGAAAGAAACTGTGGTTAG 59.988 37.037 0.00 0.00 34.90 2.34
3050 3774 5.220931 GCACTGTGTGATGAAGAAAGAAACT 60.221 40.000 9.86 0.00 35.23 2.66
3177 3901 4.856801 CCGGTTCCTCCCATGCCG 62.857 72.222 0.00 0.00 41.82 5.69
3220 3944 4.710167 AAACCCGGTGCCCGTAGC 62.710 66.667 11.85 0.00 46.80 3.58
3221 3945 2.744709 CAAACCCGGTGCCCGTAG 60.745 66.667 11.85 6.22 46.80 3.51
3222 3946 4.332591 CCAAACCCGGTGCCCGTA 62.333 66.667 11.85 0.00 46.80 4.02
3294 4018 2.558554 CTACGGCTCGGGACCTTGTG 62.559 65.000 0.00 0.00 0.00 3.33
3295 4019 2.283388 TACGGCTCGGGACCTTGT 60.283 61.111 0.00 0.00 0.00 3.16
3309 4033 1.439644 GAGGAAGGCAGGCTCTACG 59.560 63.158 0.00 0.00 0.00 3.51
3310 4034 1.439644 CGAGGAAGGCAGGCTCTAC 59.560 63.158 0.00 0.00 0.00 2.59
3311 4035 2.427245 GCGAGGAAGGCAGGCTCTA 61.427 63.158 0.00 0.00 0.00 2.43
3312 4036 3.780173 GCGAGGAAGGCAGGCTCT 61.780 66.667 0.00 0.00 0.00 4.09
3313 4037 4.847444 GGCGAGGAAGGCAGGCTC 62.847 72.222 0.00 0.00 36.61 4.70
3331 4055 0.107752 GCCAGGAAGAAGAGGAGCAG 60.108 60.000 0.00 0.00 0.00 4.24
3341 4065 0.252761 TCATGCGAATGCCAGGAAGA 59.747 50.000 0.00 0.00 41.78 2.87
3385 4115 3.082548 GGTTTCTTTCTTCTACCCTGGC 58.917 50.000 0.00 0.00 0.00 4.85
3388 4118 2.638363 AGCGGTTTCTTTCTTCTACCCT 59.362 45.455 0.00 0.00 0.00 4.34
3423 4153 1.365633 GGATCAGACTAGCCCTGCG 59.634 63.158 7.63 0.00 0.00 5.18
3451 4182 9.565090 CCTTCAGATATATCAGGTTTTTCATCA 57.435 33.333 15.08 0.00 0.00 3.07
3498 4235 5.300539 AGAAGCAGGGTTTTTCTTCTTCTTC 59.699 40.000 0.00 0.00 41.56 2.87
3504 4241 5.521906 AGAAAGAAGCAGGGTTTTTCTTC 57.478 39.130 11.78 0.00 39.52 2.87
3522 4259 2.226330 CCATTGACACCGGACAAGAAA 58.774 47.619 9.46 0.00 32.49 2.52
3531 4268 1.153978 GTGCATGCCATTGACACCG 60.154 57.895 16.68 0.00 0.00 4.94
3630 4367 0.802494 CCAAAATACCTCACGCGCTT 59.198 50.000 5.73 0.00 0.00 4.68
3664 4401 6.322201 CCCACTGCTCCTGACATTAAATTATT 59.678 38.462 0.00 0.00 0.00 1.40
3677 4414 2.667418 CCACTCCCACTGCTCCTG 59.333 66.667 0.00 0.00 0.00 3.86
3892 4629 1.323271 GCGTCCACCATCTCCTCTCA 61.323 60.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.