Multiple sequence alignment - TraesCS2B01G204300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G204300 chr2B 100.000 3617 0 0 1 3617 184136102 184132486 0.000000e+00 6680.0
1 TraesCS2B01G204300 chr2B 94.991 1677 58 13 99 1770 403417612 403419267 0.000000e+00 2608.0
2 TraesCS2B01G204300 chr2B 96.396 222 8 0 3396 3617 598384244 598384465 2.050000e-97 366.0
3 TraesCS2B01G204300 chr2B 95.946 222 8 1 3396 3617 598391125 598391345 3.430000e-95 359.0
4 TraesCS2B01G204300 chr2B 96.078 102 3 1 1196 1296 403418794 403418895 8.030000e-37 165.0
5 TraesCS2B01G204300 chr5B 94.926 2779 109 12 641 3395 239398951 239396181 0.000000e+00 4322.0
6 TraesCS2B01G204300 chr5B 91.129 372 30 3 95 464 239414345 239413975 5.390000e-138 501.0
7 TraesCS2B01G204300 chr5B 96.396 222 8 0 3396 3617 389875730 389875509 2.050000e-97 366.0
8 TraesCS2B01G204300 chr5B 95.139 144 7 0 500 643 239413747 239413604 1.010000e-55 228.0
9 TraesCS2B01G204300 chr5B 97.059 102 2 1 1196 1296 239398296 239398195 1.730000e-38 171.0
10 TraesCS2B01G204300 chr1D 84.471 747 85 9 1927 2656 50907016 50907748 0.000000e+00 708.0
11 TraesCS2B01G204300 chr1D 95.000 140 7 0 3256 3395 452341567 452341706 1.690000e-53 220.0
12 TraesCS2B01G204300 chr1D 83.237 173 19 5 1590 1762 50906772 50906934 2.250000e-32 150.0
13 TraesCS2B01G204300 chr1A 92.562 484 26 4 1420 1897 49968522 49969001 0.000000e+00 686.0
14 TraesCS2B01G204300 chr1A 86.379 580 63 2 2093 2656 49970302 49970881 1.430000e-173 619.0
15 TraesCS2B01G204300 chr1A 89.340 197 17 2 1894 2089 49969078 49969271 1.000000e-60 244.0
16 TraesCS2B01G204300 chr1A 95.000 140 7 0 3256 3395 547254459 547254598 1.690000e-53 220.0
17 TraesCS2B01G204300 chr1B 87.049 610 63 2 2063 2656 72028665 72028056 0.000000e+00 675.0
18 TraesCS2B01G204300 chr1B 95.000 140 7 0 3256 3395 622187586 622187447 1.690000e-53 220.0
19 TraesCS2B01G204300 chr1B 78.393 361 43 12 1559 1892 72029097 72028745 6.120000e-48 202.0
20 TraesCS2B01G204300 chr4B 79.928 553 89 7 2121 2654 527113566 527113017 1.580000e-103 387.0
21 TraesCS2B01G204300 chr4B 96.818 220 7 0 3398 3617 486697260 486697479 5.710000e-98 368.0
22 TraesCS2B01G204300 chr4B 95.946 222 9 0 3396 3617 178792628 178792849 9.550000e-96 361.0
23 TraesCS2B01G204300 chr4B 95.946 222 9 0 3396 3617 178799966 178800187 9.550000e-96 361.0
24 TraesCS2B01G204300 chr4B 95.946 222 9 0 3396 3617 486689770 486689991 9.550000e-96 361.0
25 TraesCS2B01G204300 chr4D 79.529 552 93 5 2121 2654 428978647 428978098 3.410000e-100 375.0
26 TraesCS2B01G204300 chr3B 96.396 222 8 0 3396 3617 362729564 362729343 2.050000e-97 366.0
27 TraesCS2B01G204300 chr6A 88.065 310 34 2 987 1296 11784795 11784489 7.380000e-97 364.0
28 TraesCS2B01G204300 chr7B 95.946 222 9 0 3396 3617 163891754 163891533 9.550000e-96 361.0
29 TraesCS2B01G204300 chr6D 87.419 310 36 2 987 1296 10321598 10321292 1.600000e-93 353.0
30 TraesCS2B01G204300 chr6D 88.889 234 24 2 751 983 433909879 433909647 1.640000e-73 287.0
31 TraesCS2B01G204300 chr6B 86.262 313 37 4 987 1296 18854555 18854246 5.790000e-88 335.0
32 TraesCS2B01G204300 chr2D 87.967 241 25 4 746 983 618084047 618084286 7.650000e-72 281.0
33 TraesCS2B01G204300 chr2D 85.597 243 25 5 751 983 486322322 486322080 2.790000e-61 246.0
34 TraesCS2B01G204300 chr2D 88.976 127 13 1 751 876 486322478 486322352 4.840000e-34 156.0
35 TraesCS2B01G204300 chr4A 87.395 238 28 2 984 1221 740175979 740176214 4.600000e-69 272.0
36 TraesCS2B01G204300 chr4A 89.474 76 5 3 911 985 740175781 740175854 3.850000e-15 93.5
37 TraesCS2B01G204300 chr4A 86.842 76 7 3 911 985 739758481 739758554 8.320000e-12 82.4
38 TraesCS2B01G204300 chr7D 77.193 342 55 16 630 957 497579541 497579209 1.030000e-40 178.0
39 TraesCS2B01G204300 chr7D 94.286 70 4 0 2752 2821 60219318 60219249 1.370000e-19 108.0
40 TraesCS2B01G204300 chr7D 95.745 47 1 1 95 140 616764204 616764158 1.390000e-09 75.0
41 TraesCS2B01G204300 chr3D 76.744 344 50 18 630 957 55090397 55090726 8.030000e-37 165.0
42 TraesCS2B01G204300 chr3D 95.745 47 1 1 95 140 606628284 606628330 1.390000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G204300 chr2B 184132486 184136102 3616 True 6680.000000 6680 100.0000 1 3617 1 chr2B.!!$R1 3616
1 TraesCS2B01G204300 chr2B 403417612 403419267 1655 False 1386.500000 2608 95.5345 99 1770 2 chr2B.!!$F3 1671
2 TraesCS2B01G204300 chr5B 239396181 239398951 2770 True 2246.500000 4322 95.9925 641 3395 2 chr5B.!!$R2 2754
3 TraesCS2B01G204300 chr5B 239413604 239414345 741 True 364.500000 501 93.1340 95 643 2 chr5B.!!$R3 548
4 TraesCS2B01G204300 chr1D 50906772 50907748 976 False 429.000000 708 83.8540 1590 2656 2 chr1D.!!$F2 1066
5 TraesCS2B01G204300 chr1A 49968522 49970881 2359 False 516.333333 686 89.4270 1420 2656 3 chr1A.!!$F2 1236
6 TraesCS2B01G204300 chr1B 72028056 72029097 1041 True 438.500000 675 82.7210 1559 2656 2 chr1B.!!$R2 1097
7 TraesCS2B01G204300 chr4B 527113017 527113566 549 True 387.000000 387 79.9280 2121 2654 1 chr4B.!!$R1 533
8 TraesCS2B01G204300 chr4D 428978098 428978647 549 True 375.000000 375 79.5290 2121 2654 1 chr4D.!!$R1 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
289 291 0.037975 CCTTTTGCATGGACCAGCAC 60.038 55.0 15.50 1.84 41.05 4.40 F
963 1167 0.323178 CATGGTGCCCTGAGCTCTTT 60.323 55.0 16.19 0.00 44.23 2.52 F
2373 3723 0.035152 AATCCTCAATCAGCGTGGCA 60.035 50.0 0.00 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1305 1511 2.616376 CACACCAGTCCAATTTCGACAA 59.384 45.455 5.46 0.0 32.41 3.18 R
2507 3872 1.136305 GGTAGTCATCGGTTAGCTGCA 59.864 52.381 1.02 0.0 0.00 4.41 R
3538 4908 0.035439 CAATGGTGGCCCGAACTAGT 60.035 55.000 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.888934 CTGGTTGGTCAAAGATGTTTCG 58.111 45.455 0.00 0.00 0.00 3.46
22 23 3.283751 TGGTTGGTCAAAGATGTTTCGT 58.716 40.909 0.00 0.00 0.00 3.85
23 24 3.066064 TGGTTGGTCAAAGATGTTTCGTG 59.934 43.478 0.00 0.00 0.00 4.35
24 25 3.550030 GGTTGGTCAAAGATGTTTCGTGG 60.550 47.826 0.00 0.00 0.00 4.94
25 26 3.201353 TGGTCAAAGATGTTTCGTGGA 57.799 42.857 0.00 0.00 0.00 4.02
26 27 3.138304 TGGTCAAAGATGTTTCGTGGAG 58.862 45.455 0.00 0.00 0.00 3.86
27 28 2.095718 GGTCAAAGATGTTTCGTGGAGC 60.096 50.000 0.00 0.00 0.00 4.70
28 29 2.095718 GTCAAAGATGTTTCGTGGAGCC 60.096 50.000 0.00 0.00 0.00 4.70
29 30 1.200020 CAAAGATGTTTCGTGGAGCCC 59.800 52.381 0.00 0.00 0.00 5.19
30 31 0.673644 AAGATGTTTCGTGGAGCCCG 60.674 55.000 0.00 0.00 0.00 6.13
31 32 1.375523 GATGTTTCGTGGAGCCCGT 60.376 57.895 0.00 0.00 0.00 5.28
32 33 0.108520 GATGTTTCGTGGAGCCCGTA 60.109 55.000 0.00 0.00 0.00 4.02
33 34 0.539986 ATGTTTCGTGGAGCCCGTAT 59.460 50.000 0.00 0.00 0.00 3.06
34 35 0.390603 TGTTTCGTGGAGCCCGTATG 60.391 55.000 0.00 0.00 0.00 2.39
35 36 0.390735 GTTTCGTGGAGCCCGTATGT 60.391 55.000 0.00 0.00 0.00 2.29
36 37 0.108520 TTTCGTGGAGCCCGTATGTC 60.109 55.000 0.00 0.00 0.00 3.06
37 38 1.252215 TTCGTGGAGCCCGTATGTCA 61.252 55.000 0.00 0.00 0.00 3.58
38 39 1.226974 CGTGGAGCCCGTATGTCAG 60.227 63.158 0.00 0.00 0.00 3.51
39 40 1.144057 GTGGAGCCCGTATGTCAGG 59.856 63.158 0.00 0.00 0.00 3.86
43 44 4.157120 GCCCGTATGTCAGGCCGT 62.157 66.667 0.00 0.00 41.00 5.68
44 45 2.788640 GCCCGTATGTCAGGCCGTA 61.789 63.158 0.00 0.00 41.00 4.02
45 46 1.817881 CCCGTATGTCAGGCCGTAA 59.182 57.895 0.00 0.00 0.00 3.18
46 47 0.391597 CCCGTATGTCAGGCCGTAAT 59.608 55.000 0.00 0.00 0.00 1.89
47 48 1.614903 CCCGTATGTCAGGCCGTAATA 59.385 52.381 0.00 0.00 0.00 0.98
48 49 2.608752 CCCGTATGTCAGGCCGTAATAC 60.609 54.545 0.00 4.06 0.00 1.89
49 50 2.034939 CCGTATGTCAGGCCGTAATACA 59.965 50.000 16.18 10.08 0.00 2.29
50 51 3.305813 CCGTATGTCAGGCCGTAATACAT 60.306 47.826 16.18 14.85 35.16 2.29
51 52 3.673338 CGTATGTCAGGCCGTAATACATG 59.327 47.826 16.61 0.00 33.15 3.21
52 53 3.838244 ATGTCAGGCCGTAATACATGT 57.162 42.857 2.69 2.69 29.93 3.21
53 54 3.173668 TGTCAGGCCGTAATACATGTC 57.826 47.619 0.00 0.00 0.00 3.06
54 55 2.159014 TGTCAGGCCGTAATACATGTCC 60.159 50.000 0.00 0.00 0.00 4.02
55 56 2.112190 TCAGGCCGTAATACATGTCCA 58.888 47.619 0.00 0.00 0.00 4.02
56 57 2.102420 TCAGGCCGTAATACATGTCCAG 59.898 50.000 0.00 0.00 0.00 3.86
57 58 2.116238 AGGCCGTAATACATGTCCAGT 58.884 47.619 0.00 0.00 0.00 4.00
58 59 2.102588 AGGCCGTAATACATGTCCAGTC 59.897 50.000 0.00 0.00 0.00 3.51
59 60 2.480845 GCCGTAATACATGTCCAGTCC 58.519 52.381 0.00 0.00 0.00 3.85
60 61 2.805657 GCCGTAATACATGTCCAGTCCC 60.806 54.545 0.00 0.00 0.00 4.46
61 62 2.432874 CCGTAATACATGTCCAGTCCCA 59.567 50.000 0.00 0.00 0.00 4.37
62 63 3.071023 CCGTAATACATGTCCAGTCCCAT 59.929 47.826 0.00 0.00 0.00 4.00
63 64 4.307432 CGTAATACATGTCCAGTCCCATC 58.693 47.826 0.00 0.00 0.00 3.51
64 65 4.202212 CGTAATACATGTCCAGTCCCATCA 60.202 45.833 0.00 0.00 0.00 3.07
65 66 3.845781 ATACATGTCCAGTCCCATCAC 57.154 47.619 0.00 0.00 0.00 3.06
66 67 0.620556 ACATGTCCAGTCCCATCACC 59.379 55.000 0.00 0.00 0.00 4.02
67 68 0.462581 CATGTCCAGTCCCATCACCG 60.463 60.000 0.00 0.00 0.00 4.94
68 69 1.626356 ATGTCCAGTCCCATCACCGG 61.626 60.000 0.00 0.00 0.00 5.28
69 70 2.121832 TCCAGTCCCATCACCGGT 59.878 61.111 0.00 0.00 0.00 5.28
70 71 2.268920 CCAGTCCCATCACCGGTG 59.731 66.667 29.26 29.26 0.00 4.94
71 72 2.436646 CAGTCCCATCACCGGTGC 60.437 66.667 30.25 14.51 0.00 5.01
72 73 2.927856 AGTCCCATCACCGGTGCA 60.928 61.111 30.25 18.56 0.00 4.57
73 74 2.272146 GTCCCATCACCGGTGCAT 59.728 61.111 30.25 19.95 0.00 3.96
74 75 1.378514 GTCCCATCACCGGTGCATT 60.379 57.895 30.25 13.94 0.00 3.56
75 76 0.965363 GTCCCATCACCGGTGCATTT 60.965 55.000 30.25 11.31 0.00 2.32
76 77 0.251564 TCCCATCACCGGTGCATTTT 60.252 50.000 30.25 8.74 0.00 1.82
77 78 0.173255 CCCATCACCGGTGCATTTTC 59.827 55.000 30.25 0.00 0.00 2.29
78 79 1.176527 CCATCACCGGTGCATTTTCT 58.823 50.000 30.25 4.96 0.00 2.52
79 80 1.133025 CCATCACCGGTGCATTTTCTC 59.867 52.381 30.25 0.00 0.00 2.87
80 81 1.086696 ATCACCGGTGCATTTTCTCG 58.913 50.000 30.25 1.83 0.00 4.04
81 82 0.953471 TCACCGGTGCATTTTCTCGG 60.953 55.000 30.25 1.23 45.42 4.63
82 83 2.332654 ACCGGTGCATTTTCTCGGC 61.333 57.895 6.12 0.00 43.96 5.54
83 84 2.485122 CGGTGCATTTTCTCGGCC 59.515 61.111 0.00 0.00 0.00 6.13
84 85 2.331893 CGGTGCATTTTCTCGGCCA 61.332 57.895 2.24 0.00 0.00 5.36
85 86 1.508088 GGTGCATTTTCTCGGCCAG 59.492 57.895 2.24 0.00 0.00 4.85
86 87 1.153958 GTGCATTTTCTCGGCCAGC 60.154 57.895 2.24 0.00 0.00 4.85
87 88 2.342650 TGCATTTTCTCGGCCAGCC 61.343 57.895 2.24 0.00 0.00 4.85
88 89 2.048603 GCATTTTCTCGGCCAGCCT 61.049 57.895 2.24 0.00 0.00 4.58
89 90 0.748005 GCATTTTCTCGGCCAGCCTA 60.748 55.000 2.24 0.00 0.00 3.93
90 91 1.972872 CATTTTCTCGGCCAGCCTAT 58.027 50.000 2.24 0.00 0.00 2.57
91 92 2.301346 CATTTTCTCGGCCAGCCTATT 58.699 47.619 2.24 0.00 0.00 1.73
92 93 3.476552 CATTTTCTCGGCCAGCCTATTA 58.523 45.455 2.24 0.00 0.00 0.98
93 94 3.857157 TTTTCTCGGCCAGCCTATTAT 57.143 42.857 2.24 0.00 0.00 1.28
167 168 3.126831 GCGAGATGAATCTGGTTCGAAT 58.873 45.455 0.00 0.00 39.80 3.34
278 279 2.523902 CTGGGCCACCCTTTTGCA 60.524 61.111 0.00 0.00 45.70 4.08
289 291 0.037975 CCTTTTGCATGGACCAGCAC 60.038 55.000 15.50 1.84 41.05 4.40
341 343 2.196595 CAGAGAAGGGGTGGGATACAA 58.803 52.381 0.00 0.00 39.74 2.41
343 345 1.913419 GAGAAGGGGTGGGATACAACA 59.087 52.381 0.00 0.00 39.06 3.33
347 349 1.286248 GGGGTGGGATACAACACTCT 58.714 55.000 0.00 0.00 37.18 3.24
356 358 5.487488 TGGGATACAACACTCTTCCAGTAAT 59.513 40.000 0.00 0.00 39.74 1.89
448 453 1.229209 TCCTCTTTCTCCCGTGCCT 60.229 57.895 0.00 0.00 0.00 4.75
489 494 2.125512 CCTCTTTCTCCCGTGCCG 60.126 66.667 0.00 0.00 0.00 5.69
491 496 4.388499 TCTTTCTCCCGTGCCGCC 62.388 66.667 0.00 0.00 0.00 6.13
514 711 1.541672 CCTCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
528 725 2.197324 CTCCTCCTCCTCCTCCCG 59.803 72.222 0.00 0.00 0.00 5.14
532 729 3.336568 TCCTCCTCCTCCCGACGT 61.337 66.667 0.00 0.00 0.00 4.34
661 858 1.612395 CCTCCTCTGCGCTTCCTCTT 61.612 60.000 9.73 0.00 0.00 2.85
678 875 1.276421 TCTTGAAGTACCCTCTGCTGC 59.724 52.381 0.00 0.00 0.00 5.25
679 876 0.324943 TTGAAGTACCCTCTGCTGCC 59.675 55.000 0.00 0.00 0.00 4.85
680 877 1.153549 GAAGTACCCTCTGCTGCCG 60.154 63.158 0.00 0.00 0.00 5.69
681 878 3.316573 AAGTACCCTCTGCTGCCGC 62.317 63.158 0.00 0.00 0.00 6.53
705 909 1.885388 CGTCCTTCGTGTGTTGCCA 60.885 57.895 0.00 0.00 34.52 4.92
725 929 4.404073 GCCAGTGAGATTTCCTTCTCTCTA 59.596 45.833 5.91 0.00 41.99 2.43
741 945 3.621558 TCTCTATTGCTCTCTTCCACGA 58.378 45.455 0.00 0.00 0.00 4.35
744 948 3.954258 TCTATTGCTCTCTTCCACGATCA 59.046 43.478 0.00 0.00 0.00 2.92
746 950 3.616956 TTGCTCTCTTCCACGATCATT 57.383 42.857 0.00 0.00 0.00 2.57
823 1027 1.226491 CGGGTACACGAACTAGGCG 60.226 63.158 13.52 5.82 35.47 5.52
887 1091 1.267121 GGTTGAGTACAGCTCCCAGA 58.733 55.000 0.00 0.00 43.48 3.86
963 1167 0.323178 CATGGTGCCCTGAGCTCTTT 60.323 55.000 16.19 0.00 44.23 2.52
1052 1256 7.973048 AGGTGAGTGTATTTTAGATACCTGA 57.027 36.000 0.00 0.00 34.91 3.86
1053 1257 8.554490 AGGTGAGTGTATTTTAGATACCTGAT 57.446 34.615 0.00 0.00 34.91 2.90
1169 1375 7.148255 TGCAATTGTTAATAGCCTTAGACAGTG 60.148 37.037 7.40 0.00 0.00 3.66
1305 1511 6.269769 TGGAAGGCCTTGACAAAAATATTCTT 59.730 34.615 26.25 0.00 34.31 2.52
1370 1576 3.181461 ACATGCCATCTTCCACTAGCTAC 60.181 47.826 0.00 0.00 0.00 3.58
1555 1766 6.649973 TCCACTGCATTTTTATGAAATTGTGG 59.350 34.615 16.42 16.42 35.99 4.17
1687 1900 7.227314 TGTCCAGCTATATCATTTCAATGTCAC 59.773 37.037 0.00 0.00 37.65 3.67
1808 2046 7.927048 TCAGCTAATCAATTTCATGAGTGATG 58.073 34.615 15.41 6.49 33.56 3.07
1859 2100 2.905736 TGATTCTGATGTGGTGTGAGGA 59.094 45.455 0.00 0.00 0.00 3.71
2003 2325 4.925054 GGAAAATGCACTACTACGTACACA 59.075 41.667 0.00 0.00 0.00 3.72
2014 2336 1.909376 ACGTACACATCTAGCTTGCG 58.091 50.000 0.00 0.00 0.00 4.85
2016 2338 2.259618 CGTACACATCTAGCTTGCGTT 58.740 47.619 0.00 0.00 0.00 4.84
2187 3536 8.515414 GTTGGAGTAAGTTGCTATTCTTCAAAT 58.485 33.333 0.00 0.00 0.00 2.32
2195 3544 6.491403 AGTTGCTATTCTTCAAATGACCTGTT 59.509 34.615 0.00 0.00 0.00 3.16
2373 3723 0.035152 AATCCTCAATCAGCGTGGCA 60.035 50.000 0.00 0.00 0.00 4.92
2415 3765 5.364157 GGGACCATTCACTTATCTCTACAGT 59.636 44.000 0.00 0.00 0.00 3.55
2439 3789 2.883574 CGCCCACATAACTACGAAAGA 58.116 47.619 0.00 0.00 0.00 2.52
2493 3858 7.011994 TGATATATTCATCCAAGGGCAACAAT 58.988 34.615 0.00 0.00 39.74 2.71
2533 3898 1.830279 AACCGATGACTACCTCGACA 58.170 50.000 0.00 0.00 36.54 4.35
2559 3924 1.398390 GACGGCATGCGAAGAATTCTT 59.602 47.619 20.60 20.60 44.75 2.52
2606 3971 2.417719 GCTCTTCAAGTTCCGTGACAT 58.582 47.619 0.00 0.00 0.00 3.06
2742 4108 4.211502 GGGTGCCAATGCGGATGC 62.212 66.667 0.00 0.00 41.78 3.91
2756 4122 2.301577 GGATGCCGATGCTACCTATC 57.698 55.000 0.00 0.00 38.71 2.08
2764 4130 4.166523 CCGATGCTACCTATCGTATGTTG 58.833 47.826 0.00 0.00 44.30 3.33
2765 4131 4.082949 CCGATGCTACCTATCGTATGTTGA 60.083 45.833 0.00 0.00 44.30 3.18
2767 4133 6.183360 CCGATGCTACCTATCGTATGTTGATA 60.183 42.308 0.00 0.00 44.30 2.15
2768 4134 7.418408 CGATGCTACCTATCGTATGTTGATAT 58.582 38.462 0.00 0.00 41.71 1.63
2769 4135 7.915923 CGATGCTACCTATCGTATGTTGATATT 59.084 37.037 0.00 0.00 41.71 1.28
2773 4139 9.850628 GCTACCTATCGTATGTTGATATTAACA 57.149 33.333 14.66 14.66 43.93 2.41
2878 4248 3.012518 GTGCATATCCTCTGTTGTGCTT 58.987 45.455 0.00 0.00 31.69 3.91
2907 4277 7.988937 TCCCTAGATAATTTGGAGCATTGTAT 58.011 34.615 0.00 0.00 0.00 2.29
2955 4325 8.816640 ACTTAATTTAATGGCAGTTGTGAAAG 57.183 30.769 0.00 0.00 0.00 2.62
3003 4373 4.122776 ACTTCATTAGTAGCTGGCATTCG 58.877 43.478 0.00 0.00 34.56 3.34
3019 4389 8.028938 GCTGGCATTCGGTAATTAATATGAAAT 58.971 33.333 0.00 0.00 0.00 2.17
3063 4433 3.365472 AGAAAGTGTGCCCTGTTTTTCT 58.635 40.909 0.00 0.00 31.92 2.52
3073 4443 5.938125 GTGCCCTGTTTTTCTCAGATAACTA 59.062 40.000 2.81 0.00 35.20 2.24
3079 4449 8.930760 CCTGTTTTTCTCAGATAACTACTTCTG 58.069 37.037 2.81 0.00 40.58 3.02
3171 4541 9.619316 TGAACTATTGTTGTGTTAATGCATTAC 57.381 29.630 18.70 10.97 36.39 1.89
3228 4598 4.462132 TGTCTGCCAAATAATTGCTTGCTA 59.538 37.500 0.00 0.00 35.10 3.49
3364 4734 2.912956 TGGAGGTCAAACTAGCATTCCT 59.087 45.455 0.00 0.00 0.00 3.36
3385 4755 0.535102 CAGGACAGACCGCCACTTTT 60.535 55.000 0.00 0.00 44.74 2.27
3395 4765 1.535462 CCGCCACTTTTCGTCATTTCT 59.465 47.619 0.00 0.00 0.00 2.52
3396 4766 2.574322 CGCCACTTTTCGTCATTTCTG 58.426 47.619 0.00 0.00 0.00 3.02
3397 4767 2.032030 CGCCACTTTTCGTCATTTCTGT 60.032 45.455 0.00 0.00 0.00 3.41
3398 4768 3.555518 GCCACTTTTCGTCATTTCTGTC 58.444 45.455 0.00 0.00 0.00 3.51
3399 4769 3.003275 GCCACTTTTCGTCATTTCTGTCA 59.997 43.478 0.00 0.00 0.00 3.58
3400 4770 4.776743 CCACTTTTCGTCATTTCTGTCAG 58.223 43.478 0.00 0.00 0.00 3.51
3401 4771 4.511454 CCACTTTTCGTCATTTCTGTCAGA 59.489 41.667 0.00 0.00 0.00 3.27
3402 4772 5.180117 CCACTTTTCGTCATTTCTGTCAGAT 59.820 40.000 2.68 0.00 0.00 2.90
3403 4773 6.293626 CCACTTTTCGTCATTTCTGTCAGATT 60.294 38.462 2.68 0.00 0.00 2.40
3404 4774 7.134815 CACTTTTCGTCATTTCTGTCAGATTT 58.865 34.615 2.68 0.00 0.00 2.17
3405 4775 7.112565 CACTTTTCGTCATTTCTGTCAGATTTG 59.887 37.037 2.68 4.92 0.00 2.32
3406 4776 5.611796 TTCGTCATTTCTGTCAGATTTGG 57.388 39.130 2.68 0.00 0.00 3.28
3407 4777 4.002982 TCGTCATTTCTGTCAGATTTGGG 58.997 43.478 2.68 1.89 0.00 4.12
3408 4778 3.127548 CGTCATTTCTGTCAGATTTGGGG 59.872 47.826 2.68 0.00 0.00 4.96
3409 4779 4.082125 GTCATTTCTGTCAGATTTGGGGT 58.918 43.478 2.68 0.00 0.00 4.95
3410 4780 4.524328 GTCATTTCTGTCAGATTTGGGGTT 59.476 41.667 2.68 0.00 0.00 4.11
3411 4781 4.766891 TCATTTCTGTCAGATTTGGGGTTC 59.233 41.667 2.68 0.00 0.00 3.62
3412 4782 4.453480 TTTCTGTCAGATTTGGGGTTCT 57.547 40.909 2.68 0.00 0.00 3.01
3413 4783 3.423539 TCTGTCAGATTTGGGGTTCTG 57.576 47.619 0.00 0.00 40.58 3.02
3414 4784 2.040278 TCTGTCAGATTTGGGGTTCTGG 59.960 50.000 0.00 0.00 39.84 3.86
3415 4785 1.177401 GTCAGATTTGGGGTTCTGGC 58.823 55.000 0.00 0.00 39.84 4.85
3416 4786 0.776810 TCAGATTTGGGGTTCTGGCA 59.223 50.000 0.00 0.00 39.84 4.92
3417 4787 1.180029 CAGATTTGGGGTTCTGGCAG 58.820 55.000 8.58 8.58 36.53 4.85
3418 4788 1.075601 AGATTTGGGGTTCTGGCAGA 58.924 50.000 14.43 14.43 0.00 4.26
3419 4789 1.177401 GATTTGGGGTTCTGGCAGAC 58.823 55.000 18.55 12.25 0.00 3.51
3420 4790 0.251787 ATTTGGGGTTCTGGCAGACC 60.252 55.000 18.55 20.08 0.00 3.85
3421 4791 2.366153 TTTGGGGTTCTGGCAGACCC 62.366 60.000 31.08 31.08 41.84 4.46
3422 4792 2.936032 GGGGTTCTGGCAGACCCT 60.936 66.667 34.14 0.00 36.46 4.34
3423 4793 1.615424 GGGGTTCTGGCAGACCCTA 60.615 63.158 34.14 16.11 36.46 3.53
3424 4794 0.988678 GGGGTTCTGGCAGACCCTAT 60.989 60.000 34.14 0.00 36.46 2.57
3425 4795 1.694693 GGGGTTCTGGCAGACCCTATA 60.695 57.143 34.14 15.19 36.46 1.31
3426 4796 1.694696 GGGTTCTGGCAGACCCTATAG 59.305 57.143 31.34 3.59 34.66 1.31
3427 4797 2.679082 GGTTCTGGCAGACCCTATAGA 58.321 52.381 22.55 0.20 33.59 1.98
3428 4798 3.243724 GGTTCTGGCAGACCCTATAGAT 58.756 50.000 22.55 0.00 33.59 1.98
3429 4799 3.648545 GGTTCTGGCAGACCCTATAGATT 59.351 47.826 22.55 0.00 33.59 2.40
3430 4800 4.262678 GGTTCTGGCAGACCCTATAGATTC 60.263 50.000 22.55 0.00 33.59 2.52
3431 4801 3.157881 TCTGGCAGACCCTATAGATTCG 58.842 50.000 14.43 0.00 33.59 3.34
3432 4802 3.157881 CTGGCAGACCCTATAGATTCGA 58.842 50.000 9.42 0.00 33.59 3.71
3433 4803 3.572642 TGGCAGACCCTATAGATTCGAA 58.427 45.455 0.00 0.00 33.59 3.71
3434 4804 3.321111 TGGCAGACCCTATAGATTCGAAC 59.679 47.826 0.00 0.00 33.59 3.95
3435 4805 3.321111 GGCAGACCCTATAGATTCGAACA 59.679 47.826 0.00 0.00 0.00 3.18
3436 4806 4.299978 GCAGACCCTATAGATTCGAACAC 58.700 47.826 0.00 0.00 0.00 3.32
3437 4807 4.038162 GCAGACCCTATAGATTCGAACACT 59.962 45.833 0.00 5.95 0.00 3.55
3438 4808 5.524284 CAGACCCTATAGATTCGAACACTG 58.476 45.833 0.00 0.00 0.00 3.66
3439 4809 4.585162 AGACCCTATAGATTCGAACACTGG 59.415 45.833 0.00 3.66 0.00 4.00
3440 4810 3.641906 ACCCTATAGATTCGAACACTGGG 59.358 47.826 18.22 18.22 37.08 4.45
3441 4811 3.006967 CCCTATAGATTCGAACACTGGGG 59.993 52.174 0.00 12.11 0.00 4.96
3442 4812 3.641906 CCTATAGATTCGAACACTGGGGT 59.358 47.826 0.00 0.00 0.00 4.95
3444 4814 0.321653 AGATTCGAACACTGGGGTGC 60.322 55.000 0.00 0.00 46.57 5.01
3445 4815 1.635663 GATTCGAACACTGGGGTGCG 61.636 60.000 0.00 0.00 46.57 5.34
3446 4816 4.980805 TCGAACACTGGGGTGCGC 62.981 66.667 0.00 0.00 46.57 6.09
3456 4826 4.413800 GGGTGCGCGCGGAAATTT 62.414 61.111 33.06 0.00 0.00 1.82
3457 4827 3.171911 GGTGCGCGCGGAAATTTG 61.172 61.111 33.06 0.13 0.00 2.32
3458 4828 3.171911 GTGCGCGCGGAAATTTGG 61.172 61.111 33.06 0.00 0.00 3.28
3461 4831 4.114997 CGCGCGGAAATTTGGCCT 62.115 61.111 24.84 0.00 0.00 5.19
3462 4832 2.261361 GCGCGGAAATTTGGCCTT 59.739 55.556 8.83 0.00 0.00 4.35
3463 4833 1.805539 GCGCGGAAATTTGGCCTTC 60.806 57.895 8.83 0.00 0.00 3.46
3464 4834 1.883021 CGCGGAAATTTGGCCTTCT 59.117 52.632 3.32 0.00 0.00 2.85
3465 4835 0.456653 CGCGGAAATTTGGCCTTCTG 60.457 55.000 3.32 5.54 0.00 3.02
3466 4836 0.603065 GCGGAAATTTGGCCTTCTGT 59.397 50.000 3.32 0.00 31.68 3.41
3467 4837 1.402852 GCGGAAATTTGGCCTTCTGTC 60.403 52.381 3.32 0.00 31.68 3.51
3468 4838 2.162681 CGGAAATTTGGCCTTCTGTCT 58.837 47.619 3.32 0.00 0.00 3.41
3469 4839 3.343617 CGGAAATTTGGCCTTCTGTCTA 58.656 45.455 3.32 0.00 0.00 2.59
3470 4840 3.127030 CGGAAATTTGGCCTTCTGTCTAC 59.873 47.826 3.32 0.00 0.00 2.59
3471 4841 3.444034 GGAAATTTGGCCTTCTGTCTACC 59.556 47.826 3.32 0.00 0.00 3.18
3472 4842 4.336280 GAAATTTGGCCTTCTGTCTACCT 58.664 43.478 3.32 0.00 0.00 3.08
3473 4843 2.859165 TTTGGCCTTCTGTCTACCTG 57.141 50.000 3.32 0.00 0.00 4.00
3474 4844 0.324943 TTGGCCTTCTGTCTACCTGC 59.675 55.000 3.32 0.00 0.00 4.85
3475 4845 0.835971 TGGCCTTCTGTCTACCTGCA 60.836 55.000 3.32 0.00 0.00 4.41
3476 4846 0.391793 GGCCTTCTGTCTACCTGCAC 60.392 60.000 0.00 0.00 0.00 4.57
3477 4847 0.610687 GCCTTCTGTCTACCTGCACT 59.389 55.000 0.00 0.00 0.00 4.40
3478 4848 1.002544 GCCTTCTGTCTACCTGCACTT 59.997 52.381 0.00 0.00 0.00 3.16
3479 4849 2.933056 GCCTTCTGTCTACCTGCACTTC 60.933 54.545 0.00 0.00 0.00 3.01
3480 4850 2.600731 CTTCTGTCTACCTGCACTTCG 58.399 52.381 0.00 0.00 0.00 3.79
3481 4851 0.243907 TCTGTCTACCTGCACTTCGC 59.756 55.000 0.00 0.00 42.89 4.70
3482 4852 0.737715 CTGTCTACCTGCACTTCGCC 60.738 60.000 0.00 0.00 41.33 5.54
3483 4853 1.805945 GTCTACCTGCACTTCGCCG 60.806 63.158 0.00 0.00 41.33 6.46
3484 4854 3.188786 CTACCTGCACTTCGCCGC 61.189 66.667 0.00 0.00 41.33 6.53
3485 4855 4.752879 TACCTGCACTTCGCCGCC 62.753 66.667 0.00 0.00 41.33 6.13
3488 4858 4.093952 CTGCACTTCGCCGCCTTG 62.094 66.667 0.00 0.00 41.33 3.61
3491 4861 2.434185 CACTTCGCCGCCTTGCTA 60.434 61.111 0.00 0.00 0.00 3.49
3492 4862 2.125512 ACTTCGCCGCCTTGCTAG 60.126 61.111 0.00 0.00 0.00 3.42
3493 4863 2.892425 CTTCGCCGCCTTGCTAGG 60.892 66.667 10.15 10.15 45.02 3.02
3494 4864 3.371097 CTTCGCCGCCTTGCTAGGA 62.371 63.158 19.07 0.00 45.05 2.94
3495 4865 2.650813 CTTCGCCGCCTTGCTAGGAT 62.651 60.000 19.07 0.00 45.05 3.24
3496 4866 2.644555 TTCGCCGCCTTGCTAGGATC 62.645 60.000 19.07 4.71 45.05 3.36
3497 4867 2.825264 GCCGCCTTGCTAGGATCT 59.175 61.111 19.07 0.00 45.05 2.75
3498 4868 1.806461 CGCCGCCTTGCTAGGATCTA 61.806 60.000 19.07 0.00 45.05 1.98
3499 4869 0.393077 GCCGCCTTGCTAGGATCTAA 59.607 55.000 19.07 0.00 45.05 2.10
3500 4870 1.606737 GCCGCCTTGCTAGGATCTAAG 60.607 57.143 19.07 0.33 45.05 2.18
3501 4871 1.606737 CCGCCTTGCTAGGATCTAAGC 60.607 57.143 19.07 11.48 45.05 3.09
3502 4872 1.342819 CGCCTTGCTAGGATCTAAGCT 59.657 52.381 19.07 0.00 45.05 3.74
3503 4873 2.558795 CGCCTTGCTAGGATCTAAGCTA 59.441 50.000 19.07 10.90 45.05 3.32
3504 4874 3.612955 CGCCTTGCTAGGATCTAAGCTAC 60.613 52.174 19.07 0.00 45.05 3.58
3505 4875 3.612955 GCCTTGCTAGGATCTAAGCTACG 60.613 52.174 19.07 7.99 45.05 3.51
3506 4876 3.821600 CCTTGCTAGGATCTAAGCTACGA 59.178 47.826 8.73 0.00 45.05 3.43
3507 4877 4.278669 CCTTGCTAGGATCTAAGCTACGAA 59.721 45.833 8.73 6.03 45.05 3.85
3508 4878 5.221263 CCTTGCTAGGATCTAAGCTACGAAA 60.221 44.000 8.73 5.76 45.05 3.46
3509 4879 5.440234 TGCTAGGATCTAAGCTACGAAAG 57.560 43.478 17.05 0.00 39.53 2.62
3510 4880 4.278669 TGCTAGGATCTAAGCTACGAAAGG 59.721 45.833 17.05 0.00 39.53 3.11
3511 4881 4.321378 GCTAGGATCTAAGCTACGAAAGGG 60.321 50.000 11.21 0.00 35.80 3.95
3512 4882 3.912248 AGGATCTAAGCTACGAAAGGGA 58.088 45.455 0.00 0.00 0.00 4.20
3513 4883 4.287552 AGGATCTAAGCTACGAAAGGGAA 58.712 43.478 0.00 0.00 0.00 3.97
3514 4884 4.099727 AGGATCTAAGCTACGAAAGGGAAC 59.900 45.833 0.00 0.00 0.00 3.62
3515 4885 4.142004 GGATCTAAGCTACGAAAGGGAACA 60.142 45.833 0.00 0.00 0.00 3.18
3516 4886 4.877378 TCTAAGCTACGAAAGGGAACAA 57.123 40.909 0.00 0.00 0.00 2.83
3517 4887 4.563061 TCTAAGCTACGAAAGGGAACAAC 58.437 43.478 0.00 0.00 0.00 3.32
3518 4888 2.922740 AGCTACGAAAGGGAACAACA 57.077 45.000 0.00 0.00 0.00 3.33
3519 4889 2.490991 AGCTACGAAAGGGAACAACAC 58.509 47.619 0.00 0.00 0.00 3.32
3520 4890 2.158871 AGCTACGAAAGGGAACAACACA 60.159 45.455 0.00 0.00 0.00 3.72
3521 4891 2.614983 GCTACGAAAGGGAACAACACAA 59.385 45.455 0.00 0.00 0.00 3.33
3522 4892 3.303791 GCTACGAAAGGGAACAACACAAG 60.304 47.826 0.00 0.00 0.00 3.16
3523 4893 2.993937 ACGAAAGGGAACAACACAAGA 58.006 42.857 0.00 0.00 0.00 3.02
3524 4894 2.943033 ACGAAAGGGAACAACACAAGAG 59.057 45.455 0.00 0.00 0.00 2.85
3525 4895 3.202906 CGAAAGGGAACAACACAAGAGA 58.797 45.455 0.00 0.00 0.00 3.10
3526 4896 3.002348 CGAAAGGGAACAACACAAGAGAC 59.998 47.826 0.00 0.00 0.00 3.36
3527 4897 3.644966 AAGGGAACAACACAAGAGACA 57.355 42.857 0.00 0.00 0.00 3.41
3528 4898 2.919228 AGGGAACAACACAAGAGACAC 58.081 47.619 0.00 0.00 0.00 3.67
3529 4899 2.238646 AGGGAACAACACAAGAGACACA 59.761 45.455 0.00 0.00 0.00 3.72
3530 4900 2.614057 GGGAACAACACAAGAGACACAG 59.386 50.000 0.00 0.00 0.00 3.66
3531 4901 2.614057 GGAACAACACAAGAGACACAGG 59.386 50.000 0.00 0.00 0.00 4.00
3532 4902 2.332063 ACAACACAAGAGACACAGGG 57.668 50.000 0.00 0.00 0.00 4.45
3533 4903 1.559682 ACAACACAAGAGACACAGGGT 59.440 47.619 0.00 0.00 0.00 4.34
3534 4904 2.026262 ACAACACAAGAGACACAGGGTT 60.026 45.455 0.00 0.00 0.00 4.11
3535 4905 3.016736 CAACACAAGAGACACAGGGTTT 58.983 45.455 0.00 0.00 0.00 3.27
3536 4906 4.196193 CAACACAAGAGACACAGGGTTTA 58.804 43.478 0.00 0.00 0.00 2.01
3537 4907 4.706842 ACACAAGAGACACAGGGTTTAT 57.293 40.909 0.00 0.00 0.00 1.40
3538 4908 5.818678 ACACAAGAGACACAGGGTTTATA 57.181 39.130 0.00 0.00 0.00 0.98
3539 4909 5.548406 ACACAAGAGACACAGGGTTTATAC 58.452 41.667 0.00 0.00 0.00 1.47
3540 4910 5.307196 ACACAAGAGACACAGGGTTTATACT 59.693 40.000 0.00 0.00 0.00 2.12
3541 4911 6.495872 ACACAAGAGACACAGGGTTTATACTA 59.504 38.462 0.00 0.00 0.00 1.82
3542 4912 7.036220 CACAAGAGACACAGGGTTTATACTAG 58.964 42.308 0.00 0.00 0.00 2.57
3543 4913 6.724905 ACAAGAGACACAGGGTTTATACTAGT 59.275 38.462 0.00 0.00 0.00 2.57
3544 4914 7.234988 ACAAGAGACACAGGGTTTATACTAGTT 59.765 37.037 0.00 0.00 0.00 2.24
3545 4915 7.407393 AGAGACACAGGGTTTATACTAGTTC 57.593 40.000 0.00 0.00 0.00 3.01
3546 4916 6.095160 AGAGACACAGGGTTTATACTAGTTCG 59.905 42.308 0.00 0.00 0.00 3.95
3547 4917 5.126707 AGACACAGGGTTTATACTAGTTCGG 59.873 44.000 0.00 0.00 0.00 4.30
3548 4918 4.161001 ACACAGGGTTTATACTAGTTCGGG 59.839 45.833 0.00 0.00 0.00 5.14
3549 4919 3.133542 ACAGGGTTTATACTAGTTCGGGC 59.866 47.826 0.00 0.00 0.00 6.13
3550 4920 2.702478 AGGGTTTATACTAGTTCGGGCC 59.298 50.000 0.00 0.00 0.00 5.80
3551 4921 2.435437 GGGTTTATACTAGTTCGGGCCA 59.565 50.000 4.39 0.00 0.00 5.36
3552 4922 3.461061 GGTTTATACTAGTTCGGGCCAC 58.539 50.000 4.39 0.00 0.00 5.01
3553 4923 3.461061 GTTTATACTAGTTCGGGCCACC 58.539 50.000 4.39 0.00 0.00 4.61
3554 4924 2.457813 TATACTAGTTCGGGCCACCA 57.542 50.000 4.39 0.00 36.13 4.17
3555 4925 1.802553 ATACTAGTTCGGGCCACCAT 58.197 50.000 4.39 0.00 36.13 3.55
3556 4926 1.575419 TACTAGTTCGGGCCACCATT 58.425 50.000 4.39 0.00 36.13 3.16
3557 4927 0.035439 ACTAGTTCGGGCCACCATTG 60.035 55.000 4.39 0.00 36.13 2.82
3558 4928 0.035439 CTAGTTCGGGCCACCATTGT 60.035 55.000 4.39 0.00 36.13 2.71
3559 4929 0.322098 TAGTTCGGGCCACCATTGTG 60.322 55.000 4.39 0.00 42.39 3.33
3584 4954 8.260270 GGTGTAATACCCTACTTTAGTTTGTG 57.740 38.462 0.00 0.00 44.15 3.33
3585 4955 7.335171 GGTGTAATACCCTACTTTAGTTTGTGG 59.665 40.741 0.00 0.00 44.15 4.17
3586 4956 7.879677 GTGTAATACCCTACTTTAGTTTGTGGT 59.120 37.037 0.00 0.00 0.00 4.16
3587 4957 7.879160 TGTAATACCCTACTTTAGTTTGTGGTG 59.121 37.037 0.00 0.00 0.00 4.17
3588 4958 4.783560 ACCCTACTTTAGTTTGTGGTGT 57.216 40.909 0.00 0.00 0.00 4.16
3589 4959 4.457466 ACCCTACTTTAGTTTGTGGTGTG 58.543 43.478 0.00 0.00 0.00 3.82
3590 4960 3.818773 CCCTACTTTAGTTTGTGGTGTGG 59.181 47.826 0.00 0.00 0.00 4.17
3591 4961 4.457466 CCTACTTTAGTTTGTGGTGTGGT 58.543 43.478 0.00 0.00 0.00 4.16
3592 4962 4.274950 CCTACTTTAGTTTGTGGTGTGGTG 59.725 45.833 0.00 0.00 0.00 4.17
3593 4963 3.020984 ACTTTAGTTTGTGGTGTGGTGG 58.979 45.455 0.00 0.00 0.00 4.61
3594 4964 3.283751 CTTTAGTTTGTGGTGTGGTGGA 58.716 45.455 0.00 0.00 0.00 4.02
3595 4965 3.586470 TTAGTTTGTGGTGTGGTGGAT 57.414 42.857 0.00 0.00 0.00 3.41
3596 4966 2.452600 AGTTTGTGGTGTGGTGGATT 57.547 45.000 0.00 0.00 0.00 3.01
3597 4967 2.031120 AGTTTGTGGTGTGGTGGATTG 58.969 47.619 0.00 0.00 0.00 2.67
3598 4968 0.749649 TTTGTGGTGTGGTGGATTGC 59.250 50.000 0.00 0.00 0.00 3.56
3599 4969 1.112315 TTGTGGTGTGGTGGATTGCC 61.112 55.000 0.00 0.00 0.00 4.52
3600 4970 1.228552 GTGGTGTGGTGGATTGCCT 60.229 57.895 0.00 0.00 34.31 4.75
3601 4971 1.074775 TGGTGTGGTGGATTGCCTC 59.925 57.895 0.00 0.00 34.31 4.70
3602 4972 1.380302 GGTGTGGTGGATTGCCTCT 59.620 57.895 0.00 0.00 34.31 3.69
3603 4973 0.251341 GGTGTGGTGGATTGCCTCTT 60.251 55.000 0.00 0.00 34.31 2.85
3604 4974 0.883833 GTGTGGTGGATTGCCTCTTG 59.116 55.000 0.00 0.00 34.31 3.02
3605 4975 0.251297 TGTGGTGGATTGCCTCTTGG 60.251 55.000 0.00 0.00 34.31 3.61
3606 4976 0.967380 GTGGTGGATTGCCTCTTGGG 60.967 60.000 0.00 0.00 38.36 4.12
3616 4986 3.963733 CCTCTTGGGCTGATGTTGA 57.036 52.632 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.315191 ACGAAACATCTTTGACCAACCAG 59.685 43.478 0.00 0.00 0.00 4.00
1 2 3.066064 CACGAAACATCTTTGACCAACCA 59.934 43.478 0.00 0.00 0.00 3.67
2 3 3.550030 CCACGAAACATCTTTGACCAACC 60.550 47.826 0.00 0.00 0.00 3.77
3 4 3.314080 TCCACGAAACATCTTTGACCAAC 59.686 43.478 0.00 0.00 0.00 3.77
4 5 3.546724 TCCACGAAACATCTTTGACCAA 58.453 40.909 0.00 0.00 0.00 3.67
5 6 3.138304 CTCCACGAAACATCTTTGACCA 58.862 45.455 0.00 0.00 0.00 4.02
6 7 2.095718 GCTCCACGAAACATCTTTGACC 60.096 50.000 0.00 0.00 0.00 4.02
7 8 2.095718 GGCTCCACGAAACATCTTTGAC 60.096 50.000 0.00 0.00 0.00 3.18
8 9 2.151202 GGCTCCACGAAACATCTTTGA 58.849 47.619 0.00 0.00 0.00 2.69
9 10 1.200020 GGGCTCCACGAAACATCTTTG 59.800 52.381 0.00 0.00 0.00 2.77
10 11 1.534729 GGGCTCCACGAAACATCTTT 58.465 50.000 0.00 0.00 0.00 2.52
11 12 0.673644 CGGGCTCCACGAAACATCTT 60.674 55.000 0.00 0.00 0.00 2.40
12 13 1.079127 CGGGCTCCACGAAACATCT 60.079 57.895 0.00 0.00 0.00 2.90
13 14 0.108520 TACGGGCTCCACGAAACATC 60.109 55.000 0.00 0.00 34.93 3.06
14 15 0.539986 ATACGGGCTCCACGAAACAT 59.460 50.000 0.00 0.00 34.93 2.71
15 16 0.390603 CATACGGGCTCCACGAAACA 60.391 55.000 0.00 0.00 34.93 2.83
16 17 0.390735 ACATACGGGCTCCACGAAAC 60.391 55.000 0.00 0.00 34.93 2.78
17 18 0.108520 GACATACGGGCTCCACGAAA 60.109 55.000 0.00 0.00 34.93 3.46
18 19 1.252215 TGACATACGGGCTCCACGAA 61.252 55.000 0.00 0.00 34.93 3.85
19 20 1.663379 CTGACATACGGGCTCCACGA 61.663 60.000 0.00 0.00 34.93 4.35
20 21 1.226974 CTGACATACGGGCTCCACG 60.227 63.158 0.00 0.00 37.36 4.94
21 22 1.144057 CCTGACATACGGGCTCCAC 59.856 63.158 0.00 0.00 38.29 4.02
22 23 3.628989 CCTGACATACGGGCTCCA 58.371 61.111 0.00 0.00 38.29 3.86
28 29 2.034939 TGTATTACGGCCTGACATACGG 59.965 50.000 0.00 0.00 0.00 4.02
29 30 3.358707 TGTATTACGGCCTGACATACG 57.641 47.619 0.00 0.00 0.00 3.06
30 31 4.628074 ACATGTATTACGGCCTGACATAC 58.372 43.478 0.00 2.85 0.00 2.39
31 32 4.262292 GGACATGTATTACGGCCTGACATA 60.262 45.833 0.00 0.00 0.00 2.29
32 33 3.494398 GGACATGTATTACGGCCTGACAT 60.494 47.826 0.00 0.00 0.00 3.06
33 34 2.159014 GGACATGTATTACGGCCTGACA 60.159 50.000 0.00 0.00 0.00 3.58
34 35 2.159014 TGGACATGTATTACGGCCTGAC 60.159 50.000 0.00 0.00 0.00 3.51
35 36 2.102420 CTGGACATGTATTACGGCCTGA 59.898 50.000 0.00 0.00 0.00 3.86
36 37 2.158957 ACTGGACATGTATTACGGCCTG 60.159 50.000 0.00 0.40 0.00 4.85
37 38 2.102588 GACTGGACATGTATTACGGCCT 59.897 50.000 0.00 0.00 0.00 5.19
38 39 2.480845 GACTGGACATGTATTACGGCC 58.519 52.381 0.00 0.00 0.00 6.13
39 40 2.480845 GGACTGGACATGTATTACGGC 58.519 52.381 0.00 0.00 0.00 5.68
40 41 2.432874 TGGGACTGGACATGTATTACGG 59.567 50.000 0.00 0.00 0.00 4.02
41 42 3.812156 TGGGACTGGACATGTATTACG 57.188 47.619 0.00 0.00 0.00 3.18
42 43 5.057149 GTGATGGGACTGGACATGTATTAC 58.943 45.833 0.00 0.00 0.00 1.89
43 44 4.102524 GGTGATGGGACTGGACATGTATTA 59.897 45.833 0.00 0.00 0.00 0.98
44 45 3.117888 GGTGATGGGACTGGACATGTATT 60.118 47.826 0.00 0.00 0.00 1.89
45 46 2.439507 GGTGATGGGACTGGACATGTAT 59.560 50.000 0.00 0.00 0.00 2.29
46 47 1.837439 GGTGATGGGACTGGACATGTA 59.163 52.381 0.00 0.00 0.00 2.29
47 48 0.620556 GGTGATGGGACTGGACATGT 59.379 55.000 0.00 0.00 0.00 3.21
48 49 0.462581 CGGTGATGGGACTGGACATG 60.463 60.000 0.00 0.00 0.00 3.21
49 50 1.626356 CCGGTGATGGGACTGGACAT 61.626 60.000 0.00 0.00 44.26 3.06
50 51 2.290287 CCGGTGATGGGACTGGACA 61.290 63.158 0.00 0.00 44.26 4.02
51 52 2.291043 ACCGGTGATGGGACTGGAC 61.291 63.158 6.12 0.00 44.26 4.02
52 53 2.121832 ACCGGTGATGGGACTGGA 59.878 61.111 6.12 0.00 44.26 3.86
53 54 2.268920 CACCGGTGATGGGACTGG 59.731 66.667 31.31 0.00 46.57 4.00
54 55 2.436646 GCACCGGTGATGGGACTG 60.437 66.667 38.30 8.81 0.00 3.51
55 56 1.852157 AATGCACCGGTGATGGGACT 61.852 55.000 38.30 11.08 0.00 3.85
56 57 0.965363 AAATGCACCGGTGATGGGAC 60.965 55.000 38.30 19.13 0.00 4.46
57 58 0.251564 AAAATGCACCGGTGATGGGA 60.252 50.000 38.30 13.10 0.00 4.37
58 59 0.173255 GAAAATGCACCGGTGATGGG 59.827 55.000 38.30 12.09 0.00 4.00
59 60 1.133025 GAGAAAATGCACCGGTGATGG 59.867 52.381 38.30 12.52 0.00 3.51
60 61 1.202065 CGAGAAAATGCACCGGTGATG 60.202 52.381 38.30 13.01 0.00 3.07
61 62 1.086696 CGAGAAAATGCACCGGTGAT 58.913 50.000 38.30 23.67 0.00 3.06
62 63 0.953471 CCGAGAAAATGCACCGGTGA 60.953 55.000 38.30 22.50 35.83 4.02
63 64 1.501741 CCGAGAAAATGCACCGGTG 59.498 57.895 30.66 30.66 35.83 4.94
64 65 2.332654 GCCGAGAAAATGCACCGGT 61.333 57.895 0.00 0.00 41.95 5.28
65 66 2.485122 GCCGAGAAAATGCACCGG 59.515 61.111 0.00 0.00 42.74 5.28
66 67 2.257286 CTGGCCGAGAAAATGCACCG 62.257 60.000 0.00 0.00 0.00 4.94
67 68 1.508088 CTGGCCGAGAAAATGCACC 59.492 57.895 0.00 0.00 0.00 5.01
68 69 1.153958 GCTGGCCGAGAAAATGCAC 60.154 57.895 0.00 0.00 0.00 4.57
69 70 2.342650 GGCTGGCCGAGAAAATGCA 61.343 57.895 0.00 0.00 0.00 3.96
70 71 0.748005 TAGGCTGGCCGAGAAAATGC 60.748 55.000 5.93 0.00 41.95 3.56
71 72 1.972872 ATAGGCTGGCCGAGAAAATG 58.027 50.000 5.93 0.00 41.95 2.32
72 73 2.736670 AATAGGCTGGCCGAGAAAAT 57.263 45.000 5.93 0.00 41.95 1.82
73 74 3.857157 ATAATAGGCTGGCCGAGAAAA 57.143 42.857 5.93 0.00 41.95 2.29
74 75 5.012664 TCAATATAATAGGCTGGCCGAGAAA 59.987 40.000 5.93 0.00 41.95 2.52
75 76 4.530553 TCAATATAATAGGCTGGCCGAGAA 59.469 41.667 5.93 0.00 41.95 2.87
76 77 4.093743 TCAATATAATAGGCTGGCCGAGA 58.906 43.478 5.93 0.00 41.95 4.04
77 78 4.471904 TCAATATAATAGGCTGGCCGAG 57.528 45.455 5.93 0.00 41.95 4.63
78 79 4.041075 TGTTCAATATAATAGGCTGGCCGA 59.959 41.667 5.93 0.97 41.95 5.54
79 80 4.323417 TGTTCAATATAATAGGCTGGCCG 58.677 43.478 5.93 0.00 41.95 6.13
80 81 9.627123 TTATATGTTCAATATAATAGGCTGGCC 57.373 33.333 3.00 3.00 0.00 5.36
108 109 1.229643 GGCGGGTACTCTAGGAGGT 59.770 63.158 0.00 0.00 33.35 3.85
278 279 1.303074 CACTGCAGTGCTGGTCCAT 60.303 57.895 32.39 0.00 39.39 3.41
289 291 2.633657 GTGGAACGCACACTGCAG 59.366 61.111 13.48 13.48 45.36 4.41
341 343 4.650131 GGCTAGGTATTACTGGAAGAGTGT 59.350 45.833 0.00 0.00 37.43 3.55
343 345 4.224762 GGGCTAGGTATTACTGGAAGAGT 58.775 47.826 0.00 0.00 37.43 3.24
347 349 1.690352 GCGGGCTAGGTATTACTGGAA 59.310 52.381 0.00 0.00 0.00 3.53
356 358 2.756691 TCGCTTGCGGGCTAGGTA 60.757 61.111 15.10 0.00 0.00 3.08
448 453 3.760035 GTGAGGAGAAGCGGCGGA 61.760 66.667 9.78 0.00 0.00 5.54
498 503 0.996762 GGAGGAGGAGGAGGAGGAGA 60.997 65.000 0.00 0.00 0.00 3.71
514 711 2.517402 CGTCGGGAGGAGGAGGAG 60.517 72.222 0.00 0.00 32.22 3.69
528 725 3.484547 CCCAACCGCGCTAACGTC 61.485 66.667 5.56 0.00 42.83 4.34
532 729 1.448893 GATGACCCAACCGCGCTAA 60.449 57.895 5.56 0.00 0.00 3.09
661 858 1.888436 CGGCAGCAGAGGGTACTTCA 61.888 60.000 0.00 0.00 0.00 3.02
680 877 3.470567 CACGAAGGACGAGCACGC 61.471 66.667 2.62 0.00 45.77 5.34
681 878 2.050351 ACACGAAGGACGAGCACG 60.050 61.111 0.76 0.76 45.77 5.34
682 879 0.874607 AACACACGAAGGACGAGCAC 60.875 55.000 0.00 0.00 45.77 4.40
683 880 0.874175 CAACACACGAAGGACGAGCA 60.874 55.000 0.00 0.00 45.77 4.26
684 881 1.853319 CAACACACGAAGGACGAGC 59.147 57.895 0.00 0.00 45.77 5.03
705 909 6.383726 AGCAATAGAGAGAAGGAAATCTCACT 59.616 38.462 8.82 8.82 46.73 3.41
725 929 3.834489 ATGATCGTGGAAGAGAGCAAT 57.166 42.857 0.00 0.00 36.33 3.56
746 950 3.392616 AGAGGAGCAGTGAGGAAGAAAAA 59.607 43.478 0.00 0.00 0.00 1.94
887 1091 0.400975 GCTGGCATCTCCTCCATGAT 59.599 55.000 0.00 0.00 35.26 2.45
963 1167 5.011227 GCCACCAAACCCTAAAACAATTAGA 59.989 40.000 0.00 0.00 0.00 2.10
1119 1325 7.467811 GCAGGAGAACAATATCAATGTAACCAG 60.468 40.741 0.00 0.00 0.00 4.00
1134 1340 6.350110 GGCTATTAACAATTGCAGGAGAACAA 60.350 38.462 5.05 0.00 40.64 2.83
1169 1375 5.820423 ACTTTTAAATTTCCAGTTGGCCAAC 59.180 36.000 36.62 36.62 41.45 3.77
1305 1511 2.616376 CACACCAGTCCAATTTCGACAA 59.384 45.455 5.46 0.00 32.41 3.18
1370 1576 3.983044 AGGCCTTCCAGTAAGTTGTAG 57.017 47.619 0.00 0.00 32.89 2.74
1585 1796 7.945033 TTTTACAGAAAAGAATGGCATCAAC 57.055 32.000 0.00 0.00 30.89 3.18
1687 1900 2.643551 ACCATGCGAACCTAAATCTGG 58.356 47.619 0.00 0.00 0.00 3.86
1929 2250 5.665360 TGGTTCCCATGATCTATGAAGTGTA 59.335 40.000 0.00 0.00 39.21 2.90
2003 2325 4.568359 CAGTATGTGAAACGCAAGCTAGAT 59.432 41.667 0.00 0.00 42.39 1.98
2099 3448 8.243961 TGACAAATTGGAAAATCCTACAGAAA 57.756 30.769 0.00 0.00 37.46 2.52
2149 3498 5.063880 ACTTACTCCAACAATGTCAACCTC 58.936 41.667 0.00 0.00 0.00 3.85
2195 3544 2.698797 ACTCCTTCGTTTCTCCAAGACA 59.301 45.455 0.00 0.00 0.00 3.41
2373 3723 1.210478 CCCATGGGAGAATCACTCGTT 59.790 52.381 28.27 0.00 41.12 3.85
2415 3765 1.750206 TCGTAGTTATGTGGGCGCTTA 59.250 47.619 7.64 0.00 0.00 3.09
2439 3789 4.219288 GCCTTGAAAATGGTCATGTCTCTT 59.781 41.667 0.00 0.00 0.00 2.85
2493 3858 2.936928 CTGCACAATGTGGAGCTCA 58.063 52.632 21.22 6.24 44.15 4.26
2507 3872 1.136305 GGTAGTCATCGGTTAGCTGCA 59.864 52.381 1.02 0.00 0.00 4.41
2533 3898 3.657448 TTCGCATGCCGTCGGTCAT 62.657 57.895 13.15 13.58 38.35 3.06
2559 3924 1.990799 CTTCTCGATACCGTGCAACA 58.009 50.000 0.00 0.00 35.74 3.33
2606 3971 4.785346 ACCCGAGGTTATCAGTAGTAGA 57.215 45.455 0.00 0.00 27.29 2.59
2704 4070 6.256104 CACCCATGTATGTTGCAATATTTGTG 59.744 38.462 14.25 9.88 0.00 3.33
2750 4116 9.653287 CCATGTTAATATCAACATACGATAGGT 57.347 33.333 3.83 0.00 45.18 3.08
2756 4122 7.331934 CCTCCTCCATGTTAATATCAACATACG 59.668 40.741 3.83 0.00 45.18 3.06
2764 4130 4.973168 TGTGCCTCCTCCATGTTAATATC 58.027 43.478 0.00 0.00 0.00 1.63
2765 4131 5.589367 ATGTGCCTCCTCCATGTTAATAT 57.411 39.130 0.00 0.00 0.00 1.28
2767 4133 3.959495 ATGTGCCTCCTCCATGTTAAT 57.041 42.857 0.00 0.00 0.00 1.40
2768 4134 4.165950 ACATATGTGCCTCCTCCATGTTAA 59.834 41.667 7.78 0.00 0.00 2.01
2769 4135 3.716353 ACATATGTGCCTCCTCCATGTTA 59.284 43.478 7.78 0.00 0.00 2.41
2770 4136 2.511218 ACATATGTGCCTCCTCCATGTT 59.489 45.455 7.78 0.00 0.00 2.71
2771 4137 2.130193 ACATATGTGCCTCCTCCATGT 58.870 47.619 7.78 0.00 0.00 3.21
2773 4139 3.053395 ACAAACATATGTGCCTCCTCCAT 60.053 43.478 9.63 0.00 30.82 3.41
2774 4140 2.308570 ACAAACATATGTGCCTCCTCCA 59.691 45.455 9.63 0.00 30.82 3.86
2775 4141 3.004752 ACAAACATATGTGCCTCCTCC 57.995 47.619 9.63 0.00 30.82 4.30
2776 4142 4.009675 TCAACAAACATATGTGCCTCCTC 58.990 43.478 9.63 0.00 32.81 3.71
2777 4143 4.032960 TCAACAAACATATGTGCCTCCT 57.967 40.909 9.63 0.00 32.81 3.69
2778 4144 4.989279 ATCAACAAACATATGTGCCTCC 57.011 40.909 9.63 0.00 32.81 4.30
2878 4248 4.968719 TGCTCCAAATTATCTAGGGAGACA 59.031 41.667 10.02 4.94 46.38 3.41
2935 4305 5.806654 ACCTTTCACAACTGCCATTAAAT 57.193 34.783 0.00 0.00 0.00 1.40
3019 4389 5.636123 TCTGGGCCTAACTTTCACAAATAA 58.364 37.500 4.53 0.00 0.00 1.40
3101 4471 9.632638 AATGAAGCTTATTGTACAATCCTACAT 57.367 29.630 24.00 17.86 32.50 2.29
3102 4472 8.892723 CAATGAAGCTTATTGTACAATCCTACA 58.107 33.333 24.00 16.65 32.30 2.74
3108 4478 9.793252 GTGAATCAATGAAGCTTATTGTACAAT 57.207 29.630 23.80 23.80 36.97 2.71
3140 4510 8.690840 GCATTAACACAACAATAGTTCAGTTTC 58.309 33.333 0.00 0.00 35.28 2.78
3143 4513 7.270757 TGCATTAACACAACAATAGTTCAGT 57.729 32.000 0.00 0.00 35.28 3.41
3151 4521 7.656412 TGACTGTAATGCATTAACACAACAAT 58.344 30.769 20.46 6.09 0.00 2.71
3152 4522 7.032377 TGACTGTAATGCATTAACACAACAA 57.968 32.000 20.46 3.43 0.00 2.83
3171 4541 4.697352 CCACAAGGTCTTTAAGGATGACTG 59.303 45.833 0.00 0.00 0.00 3.51
3252 4622 3.550437 ATGAACAGGTCATGAGCCTAC 57.450 47.619 20.92 10.82 45.69 3.18
3327 4697 0.394216 TCCATTCGGACCATTGCCAG 60.394 55.000 0.00 0.00 35.91 4.85
3364 4734 3.311110 GTGGCGGTCTGTCCTGGA 61.311 66.667 0.00 0.00 0.00 3.86
3385 4755 4.002982 CCCAAATCTGACAGAAATGACGA 58.997 43.478 9.70 0.00 0.00 4.20
3395 4765 1.547675 GCCAGAACCCCAAATCTGACA 60.548 52.381 4.43 0.00 44.64 3.58
3396 4766 1.177401 GCCAGAACCCCAAATCTGAC 58.823 55.000 4.43 0.00 44.64 3.51
3397 4767 0.776810 TGCCAGAACCCCAAATCTGA 59.223 50.000 4.43 0.00 44.64 3.27
3398 4768 1.180029 CTGCCAGAACCCCAAATCTG 58.820 55.000 0.00 0.00 42.15 2.90
3399 4769 1.075601 TCTGCCAGAACCCCAAATCT 58.924 50.000 0.00 0.00 0.00 2.40
3400 4770 1.177401 GTCTGCCAGAACCCCAAATC 58.823 55.000 0.00 0.00 0.00 2.17
3401 4771 0.251787 GGTCTGCCAGAACCCCAAAT 60.252 55.000 0.00 0.00 34.09 2.32
3402 4772 1.152830 GGTCTGCCAGAACCCCAAA 59.847 57.895 0.00 0.00 34.09 3.28
3403 4773 2.840753 GGGTCTGCCAGAACCCCAA 61.841 63.158 18.54 0.00 46.52 4.12
3404 4774 3.256960 GGGTCTGCCAGAACCCCA 61.257 66.667 18.54 0.00 46.52 4.96
3408 4778 4.559704 CGAATCTATAGGGTCTGCCAGAAC 60.560 50.000 0.00 0.00 36.17 3.01
3409 4779 3.574396 CGAATCTATAGGGTCTGCCAGAA 59.426 47.826 0.00 0.00 36.17 3.02
3410 4780 3.157881 CGAATCTATAGGGTCTGCCAGA 58.842 50.000 0.00 0.00 36.17 3.86
3411 4781 3.157881 TCGAATCTATAGGGTCTGCCAG 58.842 50.000 0.00 0.00 36.17 4.85
3412 4782 3.238788 TCGAATCTATAGGGTCTGCCA 57.761 47.619 0.00 0.00 36.17 4.92
3413 4783 3.321111 TGTTCGAATCTATAGGGTCTGCC 59.679 47.826 0.00 0.00 0.00 4.85
3414 4784 4.038162 AGTGTTCGAATCTATAGGGTCTGC 59.962 45.833 0.00 0.00 0.00 4.26
3415 4785 5.508153 CCAGTGTTCGAATCTATAGGGTCTG 60.508 48.000 0.00 0.00 0.00 3.51
3416 4786 4.585162 CCAGTGTTCGAATCTATAGGGTCT 59.415 45.833 0.00 0.00 0.00 3.85
3417 4787 4.262079 CCCAGTGTTCGAATCTATAGGGTC 60.262 50.000 0.00 0.00 0.00 4.46
3418 4788 3.641906 CCCAGTGTTCGAATCTATAGGGT 59.358 47.826 0.00 0.00 0.00 4.34
3419 4789 3.006967 CCCCAGTGTTCGAATCTATAGGG 59.993 52.174 0.00 8.59 0.00 3.53
3420 4790 3.641906 ACCCCAGTGTTCGAATCTATAGG 59.358 47.826 0.00 1.85 0.00 2.57
3421 4791 4.621991 CACCCCAGTGTTCGAATCTATAG 58.378 47.826 0.00 0.00 39.30 1.31
3422 4792 3.181469 GCACCCCAGTGTTCGAATCTATA 60.181 47.826 0.00 0.00 46.35 1.31
3423 4793 2.420129 GCACCCCAGTGTTCGAATCTAT 60.420 50.000 0.00 0.00 46.35 1.98
3424 4794 1.066430 GCACCCCAGTGTTCGAATCTA 60.066 52.381 0.00 0.00 46.35 1.98
3425 4795 0.321653 GCACCCCAGTGTTCGAATCT 60.322 55.000 0.00 0.15 46.35 2.40
3426 4796 1.635663 CGCACCCCAGTGTTCGAATC 61.636 60.000 0.00 0.00 46.35 2.52
3427 4797 1.671054 CGCACCCCAGTGTTCGAAT 60.671 57.895 0.00 0.00 46.35 3.34
3428 4798 2.280524 CGCACCCCAGTGTTCGAA 60.281 61.111 0.00 0.00 46.35 3.71
3429 4799 4.980805 GCGCACCCCAGTGTTCGA 62.981 66.667 0.30 0.00 46.35 3.71
3439 4809 4.413800 AAATTTCCGCGCGCACCC 62.414 61.111 32.61 0.72 0.00 4.61
3440 4810 3.171911 CAAATTTCCGCGCGCACC 61.172 61.111 32.61 1.16 0.00 5.01
3441 4811 3.171911 CCAAATTTCCGCGCGCAC 61.172 61.111 32.61 2.05 0.00 5.34
3444 4814 3.625082 AAGGCCAAATTTCCGCGCG 62.625 57.895 25.67 25.67 0.00 6.86
3445 4815 1.805539 GAAGGCCAAATTTCCGCGC 60.806 57.895 5.01 0.00 0.00 6.86
3446 4816 0.456653 CAGAAGGCCAAATTTCCGCG 60.457 55.000 5.01 0.00 0.00 6.46
3447 4817 0.603065 ACAGAAGGCCAAATTTCCGC 59.397 50.000 5.01 0.00 0.00 5.54
3448 4818 2.162681 AGACAGAAGGCCAAATTTCCG 58.837 47.619 5.01 0.00 0.00 4.30
3449 4819 3.444034 GGTAGACAGAAGGCCAAATTTCC 59.556 47.826 5.01 0.00 0.00 3.13
3450 4820 4.156739 CAGGTAGACAGAAGGCCAAATTTC 59.843 45.833 5.01 0.00 0.00 2.17
3451 4821 4.082125 CAGGTAGACAGAAGGCCAAATTT 58.918 43.478 5.01 0.00 0.00 1.82
3452 4822 3.690460 CAGGTAGACAGAAGGCCAAATT 58.310 45.455 5.01 0.00 0.00 1.82
3453 4823 2.619074 GCAGGTAGACAGAAGGCCAAAT 60.619 50.000 5.01 0.00 0.00 2.32
3454 4824 1.271379 GCAGGTAGACAGAAGGCCAAA 60.271 52.381 5.01 0.00 0.00 3.28
3455 4825 0.324943 GCAGGTAGACAGAAGGCCAA 59.675 55.000 5.01 0.00 0.00 4.52
3456 4826 0.835971 TGCAGGTAGACAGAAGGCCA 60.836 55.000 5.01 0.00 0.00 5.36
3457 4827 0.391793 GTGCAGGTAGACAGAAGGCC 60.392 60.000 0.00 0.00 0.00 5.19
3458 4828 0.610687 AGTGCAGGTAGACAGAAGGC 59.389 55.000 0.00 0.00 0.00 4.35
3459 4829 2.672478 CGAAGTGCAGGTAGACAGAAGG 60.672 54.545 0.00 0.00 0.00 3.46
3460 4830 2.600731 CGAAGTGCAGGTAGACAGAAG 58.399 52.381 0.00 0.00 0.00 2.85
3461 4831 1.336887 GCGAAGTGCAGGTAGACAGAA 60.337 52.381 0.00 0.00 45.45 3.02
3462 4832 0.243907 GCGAAGTGCAGGTAGACAGA 59.756 55.000 0.00 0.00 45.45 3.41
3463 4833 2.743195 GCGAAGTGCAGGTAGACAG 58.257 57.895 0.00 0.00 45.45 3.51
3464 4834 4.988065 GCGAAGTGCAGGTAGACA 57.012 55.556 0.00 0.00 45.45 3.41
3474 4844 2.434185 TAGCAAGGCGGCGAAGTG 60.434 61.111 12.98 5.31 39.27 3.16
3475 4845 2.125512 CTAGCAAGGCGGCGAAGT 60.126 61.111 12.98 0.00 39.27 3.01
3476 4846 2.650813 ATCCTAGCAAGGCGGCGAAG 62.651 60.000 12.98 0.00 43.31 3.79
3477 4847 2.644555 GATCCTAGCAAGGCGGCGAA 62.645 60.000 12.98 0.00 43.31 4.70
3478 4848 3.151958 GATCCTAGCAAGGCGGCGA 62.152 63.158 12.98 0.00 43.31 5.54
3479 4849 1.806461 TAGATCCTAGCAAGGCGGCG 61.806 60.000 0.51 0.51 43.31 6.46
3480 4850 0.393077 TTAGATCCTAGCAAGGCGGC 59.607 55.000 0.00 0.00 43.31 6.53
3481 4851 1.606737 GCTTAGATCCTAGCAAGGCGG 60.607 57.143 10.83 0.00 43.31 6.13
3482 4852 1.342819 AGCTTAGATCCTAGCAAGGCG 59.657 52.381 16.39 0.00 43.31 5.52
3483 4853 3.612955 CGTAGCTTAGATCCTAGCAAGGC 60.613 52.174 16.39 5.19 43.31 4.35
3484 4854 3.821600 TCGTAGCTTAGATCCTAGCAAGG 59.178 47.826 16.39 6.88 45.21 3.61
3485 4855 5.440234 TTCGTAGCTTAGATCCTAGCAAG 57.560 43.478 16.39 8.70 39.85 4.01
3486 4856 5.221263 CCTTTCGTAGCTTAGATCCTAGCAA 60.221 44.000 16.39 2.43 39.85 3.91
3487 4857 4.278669 CCTTTCGTAGCTTAGATCCTAGCA 59.721 45.833 16.39 3.18 39.85 3.49
3488 4858 4.321378 CCCTTTCGTAGCTTAGATCCTAGC 60.321 50.000 8.27 8.27 37.66 3.42
3489 4859 5.071370 TCCCTTTCGTAGCTTAGATCCTAG 58.929 45.833 0.00 0.00 0.00 3.02
3490 4860 5.057843 TCCCTTTCGTAGCTTAGATCCTA 57.942 43.478 0.00 0.00 0.00 2.94
3491 4861 3.912248 TCCCTTTCGTAGCTTAGATCCT 58.088 45.455 0.00 0.00 0.00 3.24
3492 4862 4.142004 TGTTCCCTTTCGTAGCTTAGATCC 60.142 45.833 0.00 0.00 0.00 3.36
3493 4863 5.007385 TGTTCCCTTTCGTAGCTTAGATC 57.993 43.478 0.00 0.00 0.00 2.75
3494 4864 5.176592 GTTGTTCCCTTTCGTAGCTTAGAT 58.823 41.667 0.00 0.00 0.00 1.98
3495 4865 4.039488 TGTTGTTCCCTTTCGTAGCTTAGA 59.961 41.667 0.00 0.00 0.00 2.10
3496 4866 4.151867 GTGTTGTTCCCTTTCGTAGCTTAG 59.848 45.833 0.00 0.00 0.00 2.18
3497 4867 4.060205 GTGTTGTTCCCTTTCGTAGCTTA 58.940 43.478 0.00 0.00 0.00 3.09
3498 4868 2.876550 GTGTTGTTCCCTTTCGTAGCTT 59.123 45.455 0.00 0.00 0.00 3.74
3499 4869 2.158871 TGTGTTGTTCCCTTTCGTAGCT 60.159 45.455 0.00 0.00 0.00 3.32
3500 4870 2.215196 TGTGTTGTTCCCTTTCGTAGC 58.785 47.619 0.00 0.00 0.00 3.58
3501 4871 4.124238 TCTTGTGTTGTTCCCTTTCGTAG 58.876 43.478 0.00 0.00 0.00 3.51
3502 4872 4.124238 CTCTTGTGTTGTTCCCTTTCGTA 58.876 43.478 0.00 0.00 0.00 3.43
3503 4873 2.943033 CTCTTGTGTTGTTCCCTTTCGT 59.057 45.455 0.00 0.00 0.00 3.85
3504 4874 3.002348 GTCTCTTGTGTTGTTCCCTTTCG 59.998 47.826 0.00 0.00 0.00 3.46
3505 4875 3.945285 TGTCTCTTGTGTTGTTCCCTTTC 59.055 43.478 0.00 0.00 0.00 2.62
3506 4876 3.694566 GTGTCTCTTGTGTTGTTCCCTTT 59.305 43.478 0.00 0.00 0.00 3.11
3507 4877 3.279434 GTGTCTCTTGTGTTGTTCCCTT 58.721 45.455 0.00 0.00 0.00 3.95
3508 4878 2.238646 TGTGTCTCTTGTGTTGTTCCCT 59.761 45.455 0.00 0.00 0.00 4.20
3509 4879 2.614057 CTGTGTCTCTTGTGTTGTTCCC 59.386 50.000 0.00 0.00 0.00 3.97
3510 4880 2.614057 CCTGTGTCTCTTGTGTTGTTCC 59.386 50.000 0.00 0.00 0.00 3.62
3511 4881 2.614057 CCCTGTGTCTCTTGTGTTGTTC 59.386 50.000 0.00 0.00 0.00 3.18
3512 4882 2.026262 ACCCTGTGTCTCTTGTGTTGTT 60.026 45.455 0.00 0.00 0.00 2.83
3513 4883 1.559682 ACCCTGTGTCTCTTGTGTTGT 59.440 47.619 0.00 0.00 0.00 3.32
3514 4884 2.332063 ACCCTGTGTCTCTTGTGTTG 57.668 50.000 0.00 0.00 0.00 3.33
3515 4885 3.366052 AAACCCTGTGTCTCTTGTGTT 57.634 42.857 0.00 0.00 0.00 3.32
3516 4886 4.706842 ATAAACCCTGTGTCTCTTGTGT 57.293 40.909 0.00 0.00 0.00 3.72
3517 4887 5.794894 AGTATAAACCCTGTGTCTCTTGTG 58.205 41.667 0.00 0.00 0.00 3.33
3518 4888 6.724905 ACTAGTATAAACCCTGTGTCTCTTGT 59.275 38.462 0.00 0.00 0.00 3.16
3519 4889 7.171630 ACTAGTATAAACCCTGTGTCTCTTG 57.828 40.000 0.00 0.00 0.00 3.02
3520 4890 7.362747 CGAACTAGTATAAACCCTGTGTCTCTT 60.363 40.741 0.00 0.00 0.00 2.85
3521 4891 6.095160 CGAACTAGTATAAACCCTGTGTCTCT 59.905 42.308 0.00 0.00 0.00 3.10
3522 4892 6.264088 CGAACTAGTATAAACCCTGTGTCTC 58.736 44.000 0.00 0.00 0.00 3.36
3523 4893 5.126707 CCGAACTAGTATAAACCCTGTGTCT 59.873 44.000 0.00 0.00 0.00 3.41
3524 4894 5.346522 CCGAACTAGTATAAACCCTGTGTC 58.653 45.833 0.00 0.00 0.00 3.67
3525 4895 4.161001 CCCGAACTAGTATAAACCCTGTGT 59.839 45.833 0.00 0.00 0.00 3.72
3526 4896 4.690122 CCCGAACTAGTATAAACCCTGTG 58.310 47.826 0.00 0.00 0.00 3.66
3527 4897 3.133542 GCCCGAACTAGTATAAACCCTGT 59.866 47.826 0.00 0.00 0.00 4.00
3528 4898 3.493873 GGCCCGAACTAGTATAAACCCTG 60.494 52.174 0.00 0.00 0.00 4.45
3529 4899 2.702478 GGCCCGAACTAGTATAAACCCT 59.298 50.000 0.00 0.00 0.00 4.34
3530 4900 2.435437 TGGCCCGAACTAGTATAAACCC 59.565 50.000 0.00 0.00 0.00 4.11
3531 4901 3.461061 GTGGCCCGAACTAGTATAAACC 58.539 50.000 0.00 0.00 0.00 3.27
3532 4902 3.118665 TGGTGGCCCGAACTAGTATAAAC 60.119 47.826 0.00 0.00 0.00 2.01
3533 4903 3.106054 TGGTGGCCCGAACTAGTATAAA 58.894 45.455 0.00 0.00 0.00 1.40
3534 4904 2.749600 TGGTGGCCCGAACTAGTATAA 58.250 47.619 0.00 0.00 0.00 0.98
3535 4905 2.457813 TGGTGGCCCGAACTAGTATA 57.542 50.000 0.00 0.00 0.00 1.47
3536 4906 1.802553 ATGGTGGCCCGAACTAGTAT 58.197 50.000 0.00 0.00 0.00 2.12
3537 4907 1.208535 CAATGGTGGCCCGAACTAGTA 59.791 52.381 0.00 0.00 0.00 1.82
3538 4908 0.035439 CAATGGTGGCCCGAACTAGT 60.035 55.000 0.00 0.00 0.00 2.57
3539 4909 0.035439 ACAATGGTGGCCCGAACTAG 60.035 55.000 0.00 0.00 0.00 2.57
3540 4910 0.322098 CACAATGGTGGCCCGAACTA 60.322 55.000 0.00 0.00 41.45 2.24
3541 4911 1.603455 CACAATGGTGGCCCGAACT 60.603 57.895 0.00 0.00 41.45 3.01
3542 4912 2.961768 CACAATGGTGGCCCGAAC 59.038 61.111 0.00 0.00 41.45 3.95
3560 4930 7.879677 ACCACAAACTAAAGTAGGGTATTACAC 59.120 37.037 0.00 0.00 0.00 2.90
3561 4931 7.879160 CACCACAAACTAAAGTAGGGTATTACA 59.121 37.037 0.00 0.00 0.00 2.41
3562 4932 7.879677 ACACCACAAACTAAAGTAGGGTATTAC 59.120 37.037 0.00 0.00 0.00 1.89
3563 4933 7.879160 CACACCACAAACTAAAGTAGGGTATTA 59.121 37.037 0.00 0.00 0.00 0.98
3564 4934 6.713450 CACACCACAAACTAAAGTAGGGTATT 59.287 38.462 0.00 0.00 0.00 1.89
3565 4935 6.235664 CACACCACAAACTAAAGTAGGGTAT 58.764 40.000 0.00 0.00 0.00 2.73
3566 4936 5.455040 CCACACCACAAACTAAAGTAGGGTA 60.455 44.000 0.00 0.00 0.00 3.69
3567 4937 4.457466 CACACCACAAACTAAAGTAGGGT 58.543 43.478 0.00 0.00 0.00 4.34
3568 4938 3.818773 CCACACCACAAACTAAAGTAGGG 59.181 47.826 0.00 0.00 0.00 3.53
3569 4939 4.274950 CACCACACCACAAACTAAAGTAGG 59.725 45.833 0.00 0.00 0.00 3.18
3570 4940 4.274950 CCACCACACCACAAACTAAAGTAG 59.725 45.833 0.00 0.00 0.00 2.57
3571 4941 4.080469 TCCACCACACCACAAACTAAAGTA 60.080 41.667 0.00 0.00 0.00 2.24
3572 4942 3.020984 CCACCACACCACAAACTAAAGT 58.979 45.455 0.00 0.00 0.00 2.66
3573 4943 3.283751 TCCACCACACCACAAACTAAAG 58.716 45.455 0.00 0.00 0.00 1.85
3574 4944 3.367646 TCCACCACACCACAAACTAAA 57.632 42.857 0.00 0.00 0.00 1.85
3575 4945 3.586470 ATCCACCACACCACAAACTAA 57.414 42.857 0.00 0.00 0.00 2.24
3576 4946 3.218453 CAATCCACCACACCACAAACTA 58.782 45.455 0.00 0.00 0.00 2.24
3577 4947 2.031120 CAATCCACCACACCACAAACT 58.969 47.619 0.00 0.00 0.00 2.66
3578 4948 1.537990 GCAATCCACCACACCACAAAC 60.538 52.381 0.00 0.00 0.00 2.93
3579 4949 0.749649 GCAATCCACCACACCACAAA 59.250 50.000 0.00 0.00 0.00 2.83
3580 4950 1.112315 GGCAATCCACCACACCACAA 61.112 55.000 0.00 0.00 0.00 3.33
3581 4951 1.530419 GGCAATCCACCACACCACA 60.530 57.895 0.00 0.00 0.00 4.17
3582 4952 1.228552 AGGCAATCCACCACACCAC 60.229 57.895 0.00 0.00 33.74 4.16
3583 4953 1.074775 GAGGCAATCCACCACACCA 59.925 57.895 0.00 0.00 33.74 4.17
3584 4954 0.251341 AAGAGGCAATCCACCACACC 60.251 55.000 0.00 0.00 33.74 4.16
3585 4955 0.883833 CAAGAGGCAATCCACCACAC 59.116 55.000 0.00 0.00 33.74 3.82
3586 4956 0.251297 CCAAGAGGCAATCCACCACA 60.251 55.000 0.00 0.00 33.74 4.17
3587 4957 0.967380 CCCAAGAGGCAATCCACCAC 60.967 60.000 0.00 0.00 33.74 4.16
3588 4958 1.383799 CCCAAGAGGCAATCCACCA 59.616 57.895 0.00 0.00 33.74 4.17
3589 4959 4.344237 CCCAAGAGGCAATCCACC 57.656 61.111 0.00 0.00 33.74 4.61
3598 4968 3.963733 TCAACATCAGCCCAAGAGG 57.036 52.632 0.00 0.00 39.47 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.