Multiple sequence alignment - TraesCS2B01G204200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G204200 chr2B 100.000 6970 0 0 1 6970 184113202 184120171 0.000000e+00 12872.0
1 TraesCS2B01G204200 chr2B 94.779 747 31 3 5818 6562 403421263 403420523 0.000000e+00 1157.0
2 TraesCS2B01G204200 chr2B 86.630 718 66 13 5818 6519 249527584 249528287 0.000000e+00 767.0
3 TraesCS2B01G204200 chr2B 95.076 264 9 3 6708 6970 403420361 403420101 5.030000e-111 412.0
4 TraesCS2B01G204200 chr2B 86.686 338 23 12 6637 6970 249528430 249528749 8.600000e-94 355.0
5 TraesCS2B01G204200 chr2B 96.226 159 6 0 6526 6684 403420505 403420347 1.930000e-65 261.0
6 TraesCS2B01G204200 chr2B 79.562 274 30 10 2 270 164025076 164025328 9.290000e-39 172.0
7 TraesCS2B01G204200 chr2B 84.375 128 11 3 4509 4628 47546193 47546067 4.420000e-22 117.0
8 TraesCS2B01G204200 chr2B 90.769 65 5 1 5709 5773 179149898 179149835 1.250000e-12 86.1
9 TraesCS2B01G204200 chr2B 100.000 40 0 0 5780 5819 760746934 760746895 2.700000e-09 75.0
10 TraesCS2B01G204200 chr2A 92.546 4427 213 50 273 4663 136647678 136643333 0.000000e+00 6239.0
11 TraesCS2B01G204200 chr2A 91.436 1121 65 12 4656 5773 136642333 136641241 0.000000e+00 1509.0
12 TraesCS2B01G204200 chr2A 84.148 675 73 17 4708 5367 132264023 132263368 2.130000e-174 623.0
13 TraesCS2B01G204200 chr2A 85.000 600 59 18 5818 6417 413439598 413439030 1.300000e-161 580.0
14 TraesCS2B01G204200 chr2A 91.049 324 27 2 3347 3669 132266323 132266001 2.990000e-118 436.0
15 TraesCS2B01G204200 chr2A 87.634 186 15 6 6527 6710 413438896 413438717 7.080000e-50 209.0
16 TraesCS2B01G204200 chr2A 85.149 202 25 4 5575 5773 132261026 132260827 1.190000e-47 202.0
17 TraesCS2B01G204200 chr2A 89.147 129 14 0 5449 5577 132263330 132263202 2.010000e-35 161.0
18 TraesCS2B01G204200 chr2A 87.302 126 10 4 4509 4629 445715002 445714878 9.430000e-29 139.0
19 TraesCS2B01G204200 chr2A 81.538 130 16 7 3181 3305 132266447 132266321 4.450000e-17 100.0
20 TraesCS2B01G204200 chr2D 92.656 4303 204 42 274 4550 130723032 130727248 0.000000e+00 6093.0
21 TraesCS2B01G204200 chr2D 93.377 921 59 2 4854 5772 130727671 130728591 0.000000e+00 1362.0
22 TraesCS2B01G204200 chr2D 84.595 766 90 15 4870 5626 125735900 125735154 0.000000e+00 736.0
23 TraesCS2B01G204200 chr2D 86.625 643 36 23 3347 3980 125739468 125738867 0.000000e+00 665.0
24 TraesCS2B01G204200 chr2D 95.926 270 10 1 4588 4856 130727242 130727511 2.990000e-118 436.0
25 TraesCS2B01G204200 chr2D 92.537 67 4 1 3239 3305 125739531 125739466 2.070000e-15 95.3
26 TraesCS2B01G204200 chr2D 97.674 43 1 0 3301 3343 20772828 20772870 2.700000e-09 75.0
27 TraesCS2B01G204200 chr4D 89.729 701 57 2 5819 6519 500525397 500524712 0.000000e+00 881.0
28 TraesCS2B01G204200 chr4D 92.262 168 11 1 6805 6970 500523607 500523440 3.250000e-58 237.0
29 TraesCS2B01G204200 chr1D 89.047 703 54 4 5818 6519 468884450 468885130 0.000000e+00 850.0
30 TraesCS2B01G204200 chr1D 86.705 692 48 5 5819 6509 49515359 49516007 0.000000e+00 728.0
31 TraesCS2B01G204200 chr1D 86.596 470 32 18 6528 6970 468885209 468885674 2.260000e-134 490.0
32 TraesCS2B01G204200 chr1D 92.857 168 10 1 6805 6970 49517882 49518049 6.980000e-60 243.0
33 TraesCS2B01G204200 chr1D 97.674 43 1 0 3301 3343 85644513 85644471 2.700000e-09 75.0
34 TraesCS2B01G204200 chr5B 95.506 445 18 2 6526 6970 239259139 239259581 0.000000e+00 710.0
35 TraesCS2B01G204200 chr5B 92.994 471 27 3 6054 6519 239258596 239259065 0.000000e+00 682.0
36 TraesCS2B01G204200 chr5B 93.333 240 15 1 5818 6056 239257123 239257362 3.090000e-93 353.0
37 TraesCS2B01G204200 chr5B 88.043 276 27 5 5848 6118 137662314 137662040 8.720000e-84 322.0
38 TraesCS2B01G204200 chr5B 84.762 315 26 13 6668 6970 119420564 119420260 5.290000e-76 296.0
39 TraesCS2B01G204200 chr5B 80.000 275 27 10 2 270 28235013 28234761 2.000000e-40 178.0
40 TraesCS2B01G204200 chr5B 80.000 275 25 10 2 270 405533096 405533346 7.190000e-40 176.0
41 TraesCS2B01G204200 chr1B 85.070 710 68 22 5818 6518 46133677 46134357 0.000000e+00 689.0
42 TraesCS2B01G204200 chr1B 85.045 448 36 15 6526 6970 46134435 46134854 1.800000e-115 427.0
43 TraesCS2B01G204200 chr3B 86.057 459 57 7 5976 6432 737680955 737681408 2.920000e-133 486.0
44 TraesCS2B01G204200 chr3B 87.302 189 20 2 6527 6711 737681528 737681716 5.480000e-51 213.0
45 TraesCS2B01G204200 chr3B 86.667 150 12 7 125 269 479851259 479851113 7.240000e-35 159.0
46 TraesCS2B01G204200 chr3B 86.000 150 14 4 125 269 427962459 427962312 3.370000e-33 154.0
47 TraesCS2B01G204200 chr3B 88.983 118 9 3 2 116 171824899 171825015 7.290000e-30 143.0
48 TraesCS2B01G204200 chr3B 84.564 149 18 5 125 269 455026254 455026107 7.290000e-30 143.0
49 TraesCS2B01G204200 chr3D 87.781 401 40 5 6032 6431 598881019 598880627 1.770000e-125 460.0
50 TraesCS2B01G204200 chr3D 87.302 189 20 2 6527 6711 598880520 598880332 5.480000e-51 213.0
51 TraesCS2B01G204200 chr7B 96.703 273 6 1 1 270 632942803 632942531 1.070000e-122 451.0
52 TraesCS2B01G204200 chr7B 79.211 279 26 13 2 275 678657146 678656895 1.560000e-36 165.0
53 TraesCS2B01G204200 chr7B 81.457 151 17 7 4488 4629 68844233 68844381 5.710000e-21 113.0
54 TraesCS2B01G204200 chr7B 100.000 43 0 0 3301 3343 361569205 361569247 5.800000e-11 80.5
55 TraesCS2B01G204200 chr3A 89.931 288 27 1 6683 6970 20432875 20433160 3.070000e-98 370.0
56 TraesCS2B01G204200 chr3A 80.000 275 28 10 2 271 9129716 9129464 2.000000e-40 178.0
57 TraesCS2B01G204200 chr3A 84.615 130 11 5 4509 4630 463026034 463026162 3.410000e-23 121.0
58 TraesCS2B01G204200 chr3A 86.842 114 8 4 4509 4615 621323865 621323752 3.410000e-23 121.0
59 TraesCS2B01G204200 chr6B 80.144 277 29 10 2 273 708254191 708254446 4.290000e-42 183.0
60 TraesCS2B01G204200 chr6B 86.577 149 14 5 125 269 646437991 646438137 7.240000e-35 159.0
61 TraesCS2B01G204200 chr6B 84.564 149 17 6 125 269 166254463 166254317 7.290000e-30 143.0
62 TraesCS2B01G204200 chr6B 95.455 44 2 0 3300 3343 174971117 174971074 3.490000e-08 71.3
63 TraesCS2B01G204200 chr5A 79.562 274 30 12 2 270 266990382 266990130 9.290000e-39 172.0
64 TraesCS2B01G204200 chr4A 78.986 276 30 10 2 270 673787435 673787689 5.590000e-36 163.0
65 TraesCS2B01G204200 chr4A 82.738 168 21 7 117 278 11815562 11815397 7.290000e-30 143.0
66 TraesCS2B01G204200 chr1A 91.453 117 8 1 2 116 388183782 388183666 7.240000e-35 159.0
67 TraesCS2B01G204200 chr7D 84.892 139 13 5 4509 4639 93783199 93783337 4.390000e-27 134.0
68 TraesCS2B01G204200 chr7D 97.674 43 1 0 3301 3343 290544854 290544896 2.700000e-09 75.0
69 TraesCS2B01G204200 chr4B 85.496 131 10 3 4506 4628 381380183 381380054 2.040000e-25 128.0
70 TraesCS2B01G204200 chr6D 84.091 132 14 2 4504 4628 7565196 7565327 3.410000e-23 121.0
71 TraesCS2B01G204200 chr7A 95.833 48 1 1 3297 3343 510146122 510146075 7.500000e-10 76.8
72 TraesCS2B01G204200 chr7A 97.674 43 1 0 3301 3343 328987801 328987843 2.700000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G204200 chr2B 184113202 184120171 6969 False 12872.000000 12872 100.000000 1 6970 1 chr2B.!!$F2 6969
1 TraesCS2B01G204200 chr2B 403420101 403421263 1162 True 610.000000 1157 95.360333 5818 6970 3 chr2B.!!$R4 1152
2 TraesCS2B01G204200 chr2B 249527584 249528749 1165 False 561.000000 767 86.658000 5818 6970 2 chr2B.!!$F3 1152
3 TraesCS2B01G204200 chr2A 136641241 136647678 6437 True 3874.000000 6239 91.991000 273 5773 2 chr2A.!!$R3 5500
4 TraesCS2B01G204200 chr2A 413438717 413439598 881 True 394.500000 580 86.317000 5818 6710 2 chr2A.!!$R4 892
5 TraesCS2B01G204200 chr2A 132260827 132266447 5620 True 304.400000 623 86.206200 3181 5773 5 chr2A.!!$R2 2592
6 TraesCS2B01G204200 chr2D 130723032 130728591 5559 False 2630.333333 6093 93.986333 274 5772 3 chr2D.!!$F2 5498
7 TraesCS2B01G204200 chr2D 125735154 125739531 4377 True 498.766667 736 87.919000 3239 5626 3 chr2D.!!$R1 2387
8 TraesCS2B01G204200 chr4D 500523440 500525397 1957 True 559.000000 881 90.995500 5819 6970 2 chr4D.!!$R1 1151
9 TraesCS2B01G204200 chr1D 468884450 468885674 1224 False 670.000000 850 87.821500 5818 6970 2 chr1D.!!$F2 1152
10 TraesCS2B01G204200 chr1D 49515359 49518049 2690 False 485.500000 728 89.781000 5819 6970 2 chr1D.!!$F1 1151
11 TraesCS2B01G204200 chr5B 239257123 239259581 2458 False 581.666667 710 93.944333 5818 6970 3 chr5B.!!$F2 1152
12 TraesCS2B01G204200 chr1B 46133677 46134854 1177 False 558.000000 689 85.057500 5818 6970 2 chr1B.!!$F1 1152
13 TraesCS2B01G204200 chr3B 737680955 737681716 761 False 349.500000 486 86.679500 5976 6711 2 chr3B.!!$F2 735
14 TraesCS2B01G204200 chr3D 598880332 598881019 687 True 336.500000 460 87.541500 6032 6711 2 chr3D.!!$R1 679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 253 0.107831 CGGACCACCCTGTTCTCAAA 59.892 55.0 0.00 0.0 0.00 2.69 F
270 271 0.176680 AATGCTAGCTCCGTCACTGG 59.823 55.0 17.23 0.0 0.00 4.00 F
321 322 0.320771 GTCACCATGTCCGCTGAAGT 60.321 55.0 0.00 0.0 0.00 3.01 F
1027 1065 0.465460 GCCCCATAACATCCGCTCAA 60.465 55.0 0.00 0.0 0.00 3.02 F
1864 1907 0.035739 TCGTAGAAACAAGGCCACCC 59.964 55.0 5.01 0.0 0.00 4.61 F
2634 2686 2.969821 ATGCTGGGGTGAGTGTTTTA 57.030 45.0 0.00 0.0 0.00 1.52 F
3432 3494 0.037326 ACAGTGTGCAGGTATCACCG 60.037 55.0 0.00 0.0 44.90 4.94 F
4446 5819 0.953727 GAGTCAATGTGGCTGCACAA 59.046 50.0 0.50 0.0 38.69 3.33 F
5249 10225 0.690762 GGTTACAGCAGGAACTCCCA 59.309 55.0 4.01 0.0 34.60 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1056 1094 0.252197 ATTGGTGGAGTTAGCCGGTC 59.748 55.000 1.90 0.00 0.00 4.79 R
1493 1534 0.457443 TTTGGTGTTGCATTGCACGA 59.543 45.000 11.66 0.00 38.71 4.35 R
1697 1740 1.059584 TCCACAGCCCAAGTCTCCAA 61.060 55.000 0.00 0.00 0.00 3.53 R
2571 2623 2.952310 GGTCATATCTTTTGTGCCCTCC 59.048 50.000 0.00 0.00 0.00 4.30 R
3432 3494 1.013524 AAATGGTTCCAATTGCGCGC 61.014 50.000 27.26 27.26 0.00 6.86 R
4355 5725 2.779430 TGATACTGCCCAAGGTGATCAT 59.221 45.455 0.00 0.00 0.00 2.45 R
5249 10225 1.618343 ACCTGCCTTAAAATTGCGCTT 59.382 42.857 9.73 0.00 0.00 4.68 R
5666 12841 0.328258 CCTTTTCCATCTCCACGGGT 59.672 55.000 0.00 0.00 0.00 5.28 R
6841 16893 0.179103 AAGCACACAAGCAAACTGCC 60.179 50.000 0.00 0.00 46.52 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.787725 CGTAGCCCAGAAATATAGTCTTTTT 57.212 36.000 0.00 0.00 0.00 1.94
34 35 7.630924 CGTAGCCCAGAAATATAGTCTTTTTG 58.369 38.462 0.00 0.00 0.00 2.44
35 36 7.494625 CGTAGCCCAGAAATATAGTCTTTTTGA 59.505 37.037 0.00 0.00 0.00 2.69
36 37 9.174166 GTAGCCCAGAAATATAGTCTTTTTGAA 57.826 33.333 0.00 0.00 0.00 2.69
37 38 8.056407 AGCCCAGAAATATAGTCTTTTTGAAC 57.944 34.615 0.00 0.00 0.00 3.18
38 39 7.890655 AGCCCAGAAATATAGTCTTTTTGAACT 59.109 33.333 0.00 0.00 0.00 3.01
39 40 8.523658 GCCCAGAAATATAGTCTTTTTGAACTT 58.476 33.333 0.00 0.00 0.00 2.66
50 51 8.159344 AGTCTTTTTGAACTTCTCAAGGTATG 57.841 34.615 0.00 0.00 44.84 2.39
51 52 7.775561 AGTCTTTTTGAACTTCTCAAGGTATGT 59.224 33.333 0.00 0.00 44.84 2.29
52 53 9.052759 GTCTTTTTGAACTTCTCAAGGTATGTA 57.947 33.333 0.00 0.00 44.84 2.29
53 54 9.052759 TCTTTTTGAACTTCTCAAGGTATGTAC 57.947 33.333 0.00 0.00 44.84 2.90
54 55 8.974060 TTTTTGAACTTCTCAAGGTATGTACT 57.026 30.769 0.00 0.00 44.84 2.73
57 58 9.653287 TTTGAACTTCTCAAGGTATGTACTATG 57.347 33.333 0.00 0.00 44.84 2.23
58 59 7.265673 TGAACTTCTCAAGGTATGTACTATGC 58.734 38.462 0.00 0.00 0.00 3.14
59 60 7.124298 TGAACTTCTCAAGGTATGTACTATGCT 59.876 37.037 0.00 0.00 0.00 3.79
60 61 7.045126 ACTTCTCAAGGTATGTACTATGCTC 57.955 40.000 0.00 0.00 0.00 4.26
61 62 6.041069 ACTTCTCAAGGTATGTACTATGCTCC 59.959 42.308 0.00 0.00 0.00 4.70
62 63 5.454966 TCTCAAGGTATGTACTATGCTCCA 58.545 41.667 0.00 0.00 0.00 3.86
63 64 6.077993 TCTCAAGGTATGTACTATGCTCCAT 58.922 40.000 0.00 0.00 0.00 3.41
64 65 6.209589 TCTCAAGGTATGTACTATGCTCCATC 59.790 42.308 0.00 0.00 0.00 3.51
65 66 6.077993 TCAAGGTATGTACTATGCTCCATCT 58.922 40.000 0.00 0.00 0.00 2.90
66 67 7.238710 TCAAGGTATGTACTATGCTCCATCTA 58.761 38.462 0.00 0.00 0.00 1.98
67 68 7.394641 TCAAGGTATGTACTATGCTCCATCTAG 59.605 40.741 0.00 0.00 0.00 2.43
68 69 6.795590 AGGTATGTACTATGCTCCATCTAGT 58.204 40.000 0.00 0.00 0.00 2.57
69 70 7.929959 AGGTATGTACTATGCTCCATCTAGTA 58.070 38.462 0.00 0.00 0.00 1.82
70 71 8.561769 AGGTATGTACTATGCTCCATCTAGTAT 58.438 37.037 0.00 0.00 0.00 2.12
71 72 9.848710 GGTATGTACTATGCTCCATCTAGTATA 57.151 37.037 0.00 0.00 0.00 1.47
73 74 8.754991 ATGTACTATGCTCCATCTAGTATACC 57.245 38.462 0.00 0.00 0.00 2.73
74 75 7.696017 TGTACTATGCTCCATCTAGTATACCA 58.304 38.462 0.00 0.00 0.00 3.25
75 76 8.336987 TGTACTATGCTCCATCTAGTATACCAT 58.663 37.037 0.00 0.00 0.00 3.55
76 77 7.652524 ACTATGCTCCATCTAGTATACCATG 57.347 40.000 0.00 0.03 0.00 3.66
77 78 7.185565 ACTATGCTCCATCTAGTATACCATGT 58.814 38.462 0.00 0.00 0.00 3.21
78 79 8.336987 ACTATGCTCCATCTAGTATACCATGTA 58.663 37.037 0.00 0.00 0.00 2.29
79 80 7.652524 ATGCTCCATCTAGTATACCATGTAG 57.347 40.000 0.00 0.00 0.00 2.74
80 81 5.952347 TGCTCCATCTAGTATACCATGTAGG 59.048 44.000 0.00 0.00 45.67 3.18
81 82 5.163499 GCTCCATCTAGTATACCATGTAGGC 60.163 48.000 0.00 1.31 43.14 3.93
82 83 6.153942 TCCATCTAGTATACCATGTAGGCT 57.846 41.667 0.00 0.00 43.14 4.58
83 84 6.562228 TCCATCTAGTATACCATGTAGGCTT 58.438 40.000 0.00 0.00 43.14 4.35
84 85 6.663953 TCCATCTAGTATACCATGTAGGCTTC 59.336 42.308 0.00 0.00 43.14 3.86
85 86 6.665680 CCATCTAGTATACCATGTAGGCTTCT 59.334 42.308 0.00 0.00 43.14 2.85
86 87 7.179338 CCATCTAGTATACCATGTAGGCTTCTT 59.821 40.741 0.00 0.00 43.14 2.52
87 88 8.589338 CATCTAGTATACCATGTAGGCTTCTTT 58.411 37.037 0.00 0.00 43.14 2.52
88 89 9.824216 ATCTAGTATACCATGTAGGCTTCTTTA 57.176 33.333 0.00 0.00 43.14 1.85
89 90 9.824216 TCTAGTATACCATGTAGGCTTCTTTAT 57.176 33.333 0.00 0.00 43.14 1.40
90 91 9.862371 CTAGTATACCATGTAGGCTTCTTTATG 57.138 37.037 0.00 0.00 43.14 1.90
91 92 7.162082 AGTATACCATGTAGGCTTCTTTATGC 58.838 38.462 0.00 0.00 43.14 3.14
92 93 4.235079 ACCATGTAGGCTTCTTTATGCA 57.765 40.909 0.00 0.00 43.14 3.96
93 94 4.599041 ACCATGTAGGCTTCTTTATGCAA 58.401 39.130 0.00 0.00 43.14 4.08
94 95 5.016173 ACCATGTAGGCTTCTTTATGCAAA 58.984 37.500 0.00 0.00 43.14 3.68
95 96 5.480073 ACCATGTAGGCTTCTTTATGCAAAA 59.520 36.000 0.00 0.00 43.14 2.44
96 97 5.807011 CCATGTAGGCTTCTTTATGCAAAAC 59.193 40.000 0.00 0.00 0.00 2.43
97 98 6.350445 CCATGTAGGCTTCTTTATGCAAAACT 60.350 38.462 0.00 0.00 0.00 2.66
98 99 6.648879 TGTAGGCTTCTTTATGCAAAACTT 57.351 33.333 0.00 0.00 0.00 2.66
99 100 6.446318 TGTAGGCTTCTTTATGCAAAACTTG 58.554 36.000 0.00 0.00 0.00 3.16
100 101 4.886579 AGGCTTCTTTATGCAAAACTTGG 58.113 39.130 0.00 0.00 0.00 3.61
101 102 4.588528 AGGCTTCTTTATGCAAAACTTGGA 59.411 37.500 0.00 0.00 34.77 3.53
102 103 4.686091 GGCTTCTTTATGCAAAACTTGGAC 59.314 41.667 0.00 0.00 32.41 4.02
103 104 5.509670 GGCTTCTTTATGCAAAACTTGGACT 60.510 40.000 0.00 0.00 32.41 3.85
104 105 5.985530 GCTTCTTTATGCAAAACTTGGACTT 59.014 36.000 0.00 0.00 32.41 3.01
105 106 7.145323 GCTTCTTTATGCAAAACTTGGACTTA 58.855 34.615 0.00 0.00 32.41 2.24
106 107 7.651704 GCTTCTTTATGCAAAACTTGGACTTAA 59.348 33.333 0.00 0.00 32.41 1.85
107 108 9.696917 CTTCTTTATGCAAAACTTGGACTTAAT 57.303 29.630 0.00 0.00 32.41 1.40
109 110 9.474920 TCTTTATGCAAAACTTGGACTTAATTG 57.525 29.630 0.00 0.00 32.41 2.32
110 111 9.474920 CTTTATGCAAAACTTGGACTTAATTGA 57.525 29.630 0.00 0.00 32.41 2.57
111 112 9.474920 TTTATGCAAAACTTGGACTTAATTGAG 57.525 29.630 0.00 0.00 32.41 3.02
112 113 6.707440 TGCAAAACTTGGACTTAATTGAGA 57.293 33.333 3.94 0.00 0.00 3.27
113 114 7.106439 TGCAAAACTTGGACTTAATTGAGAA 57.894 32.000 3.94 0.00 0.00 2.87
114 115 7.725251 TGCAAAACTTGGACTTAATTGAGAAT 58.275 30.769 3.94 0.00 0.00 2.40
115 116 8.203485 TGCAAAACTTGGACTTAATTGAGAATT 58.797 29.630 3.94 0.00 34.90 2.17
116 117 9.691362 GCAAAACTTGGACTTAATTGAGAATTA 57.309 29.630 3.94 0.00 32.38 1.40
146 147 9.614792 AGACTTAGTTGAGAATTTTAGTGTGTT 57.385 29.630 0.00 0.00 0.00 3.32
153 154 9.997482 GTTGAGAATTTTAGTGTGTTTGTAAGA 57.003 29.630 0.00 0.00 0.00 2.10
154 155 9.997482 TTGAGAATTTTAGTGTGTTTGTAAGAC 57.003 29.630 0.00 0.00 0.00 3.01
155 156 8.617809 TGAGAATTTTAGTGTGTTTGTAAGACC 58.382 33.333 0.00 0.00 0.00 3.85
156 157 8.514330 AGAATTTTAGTGTGTTTGTAAGACCA 57.486 30.769 0.00 0.00 0.00 4.02
157 158 9.131791 AGAATTTTAGTGTGTTTGTAAGACCAT 57.868 29.630 0.00 0.00 0.00 3.55
165 166 9.959721 AGTGTGTTTGTAAGACCATATTAATCT 57.040 29.630 0.00 0.00 0.00 2.40
237 238 4.184439 TTTTTGGGAAGGGCGGAC 57.816 55.556 0.00 0.00 0.00 4.79
238 239 1.532078 TTTTTGGGAAGGGCGGACC 60.532 57.895 0.00 0.00 40.67 4.46
239 240 2.299727 TTTTTGGGAAGGGCGGACCA 62.300 55.000 0.92 0.00 43.89 4.02
240 241 2.987355 TTTTGGGAAGGGCGGACCAC 62.987 60.000 0.92 0.00 43.89 4.16
247 248 4.717313 GGGCGGACCACCCTGTTC 62.717 72.222 10.65 0.00 44.68 3.18
248 249 3.637273 GGCGGACCACCCTGTTCT 61.637 66.667 0.00 0.00 35.26 3.01
249 250 2.047179 GCGGACCACCCTGTTCTC 60.047 66.667 0.00 0.00 0.00 2.87
250 251 2.879233 GCGGACCACCCTGTTCTCA 61.879 63.158 0.00 0.00 0.00 3.27
251 252 1.752198 CGGACCACCCTGTTCTCAA 59.248 57.895 0.00 0.00 0.00 3.02
252 253 0.107831 CGGACCACCCTGTTCTCAAA 59.892 55.000 0.00 0.00 0.00 2.69
253 254 1.271379 CGGACCACCCTGTTCTCAAAT 60.271 52.381 0.00 0.00 0.00 2.32
254 255 2.162681 GGACCACCCTGTTCTCAAATG 58.837 52.381 0.00 0.00 0.00 2.32
255 256 1.541588 GACCACCCTGTTCTCAAATGC 59.458 52.381 0.00 0.00 0.00 3.56
256 257 1.145738 ACCACCCTGTTCTCAAATGCT 59.854 47.619 0.00 0.00 0.00 3.79
257 258 2.375174 ACCACCCTGTTCTCAAATGCTA 59.625 45.455 0.00 0.00 0.00 3.49
258 259 3.012518 CCACCCTGTTCTCAAATGCTAG 58.987 50.000 0.00 0.00 0.00 3.42
259 260 2.421424 CACCCTGTTCTCAAATGCTAGC 59.579 50.000 8.10 8.10 0.00 3.42
260 261 2.307098 ACCCTGTTCTCAAATGCTAGCT 59.693 45.455 17.23 0.00 0.00 3.32
261 262 2.941720 CCCTGTTCTCAAATGCTAGCTC 59.058 50.000 17.23 0.00 0.00 4.09
262 263 2.941720 CCTGTTCTCAAATGCTAGCTCC 59.058 50.000 17.23 0.00 0.00 4.70
263 264 2.606725 CTGTTCTCAAATGCTAGCTCCG 59.393 50.000 17.23 1.98 0.00 4.63
264 265 2.028112 TGTTCTCAAATGCTAGCTCCGT 60.028 45.455 17.23 0.00 0.00 4.69
265 266 2.586258 TCTCAAATGCTAGCTCCGTC 57.414 50.000 17.23 0.00 0.00 4.79
266 267 1.824852 TCTCAAATGCTAGCTCCGTCA 59.175 47.619 17.23 0.00 0.00 4.35
267 268 1.929836 CTCAAATGCTAGCTCCGTCAC 59.070 52.381 17.23 0.00 0.00 3.67
268 269 1.550524 TCAAATGCTAGCTCCGTCACT 59.449 47.619 17.23 0.00 0.00 3.41
269 270 1.662629 CAAATGCTAGCTCCGTCACTG 59.337 52.381 17.23 0.00 0.00 3.66
270 271 0.176680 AATGCTAGCTCCGTCACTGG 59.823 55.000 17.23 0.00 0.00 4.00
271 272 2.202810 GCTAGCTCCGTCACTGGC 60.203 66.667 7.70 0.00 33.09 4.85
284 285 1.832998 TCACTGGCTGCATCATCTACA 59.167 47.619 0.50 0.00 0.00 2.74
290 291 2.359848 GGCTGCATCATCTACATTTGCA 59.640 45.455 0.50 0.00 40.73 4.08
306 307 1.629013 TGCATCGTCTTCATCGTCAC 58.371 50.000 0.00 0.00 0.00 3.67
314 315 1.135112 TCTTCATCGTCACCATGTCCG 60.135 52.381 0.00 0.00 0.00 4.79
316 317 1.153568 CATCGTCACCATGTCCGCT 60.154 57.895 0.00 0.00 0.00 5.52
321 322 0.320771 GTCACCATGTCCGCTGAAGT 60.321 55.000 0.00 0.00 0.00 3.01
325 326 0.803768 CCATGTCCGCTGAAGTCGAG 60.804 60.000 0.00 0.00 0.00 4.04
366 367 2.593026 TGAAACCGAAAAGAAGGCCAT 58.407 42.857 5.01 0.00 0.00 4.40
377 378 1.001020 AAGGCCATTGATGACGCCA 60.001 52.632 5.01 0.00 44.18 5.69
379 380 2.774799 GGCCATTGATGACGCCACC 61.775 63.158 0.00 0.00 41.25 4.61
433 434 1.806542 CCGAATGGAGGGCATAATTCG 59.193 52.381 17.49 17.49 46.75 3.34
441 442 4.104102 TGGAGGGCATAATTCGTTTATCCT 59.896 41.667 0.00 0.00 30.73 3.24
446 447 5.221244 GGGCATAATTCGTTTATCCTGCTTT 60.221 40.000 0.00 0.00 0.00 3.51
522 527 4.895854 GCATGCGCTTTGGTGATT 57.104 50.000 9.73 0.00 34.30 2.57
524 529 1.135699 GCATGCGCTTTGGTGATTCG 61.136 55.000 9.73 0.00 34.30 3.34
531 536 3.002246 GCGCTTTGGTGATTCGATATCAA 59.998 43.478 0.00 0.43 0.00 2.57
533 538 4.518217 GCTTTGGTGATTCGATATCAACG 58.482 43.478 15.89 5.87 38.52 4.10
534 539 4.034048 GCTTTGGTGATTCGATATCAACGT 59.966 41.667 15.89 0.00 38.52 3.99
537 542 4.500127 TGGTGATTCGATATCAACGTGTT 58.500 39.130 15.89 0.00 38.52 3.32
539 544 6.100668 TGGTGATTCGATATCAACGTGTTTA 58.899 36.000 15.89 1.42 38.52 2.01
541 546 7.279090 TGGTGATTCGATATCAACGTGTTTATT 59.721 33.333 15.89 0.00 38.52 1.40
546 551 8.981370 TTCGATATCAACGTGTTTATTTATGC 57.019 30.769 3.12 0.00 0.00 3.14
547 552 7.569297 TCGATATCAACGTGTTTATTTATGCC 58.431 34.615 3.12 0.00 0.00 4.40
548 553 7.224949 TCGATATCAACGTGTTTATTTATGCCA 59.775 33.333 3.12 0.00 0.00 4.92
549 554 7.853437 CGATATCAACGTGTTTATTTATGCCAA 59.147 33.333 3.12 0.00 0.00 4.52
550 555 9.677567 GATATCAACGTGTTTATTTATGCCAAT 57.322 29.630 0.00 0.00 0.00 3.16
551 556 7.754069 ATCAACGTGTTTATTTATGCCAATG 57.246 32.000 0.00 0.00 0.00 2.82
552 557 6.682746 TCAACGTGTTTATTTATGCCAATGT 58.317 32.000 0.00 0.00 0.00 2.71
553 558 6.804295 TCAACGTGTTTATTTATGCCAATGTC 59.196 34.615 0.00 0.00 0.00 3.06
554 559 6.509418 ACGTGTTTATTTATGCCAATGTCT 57.491 33.333 0.00 0.00 0.00 3.41
555 560 7.618502 ACGTGTTTATTTATGCCAATGTCTA 57.381 32.000 0.00 0.00 0.00 2.59
637 668 2.657484 ATACATGGACGTCGGTCGCG 62.657 60.000 9.92 0.00 44.39 5.87
638 669 4.470170 CATGGACGTCGGTCGCGA 62.470 66.667 3.71 3.71 44.39 5.87
676 707 0.667453 TGATGCGTGCATGTTTGTGT 59.333 45.000 12.81 0.00 36.70 3.72
783 814 2.125188 GACCCAGCTCAGCTCAGC 60.125 66.667 0.00 0.00 36.40 4.26
914 945 3.587933 TTGCGTGCCACCGTTTCC 61.588 61.111 0.00 0.00 0.00 3.13
1027 1065 0.465460 GCCCCATAACATCCGCTCAA 60.465 55.000 0.00 0.00 0.00 3.02
1029 1067 1.308998 CCCATAACATCCGCTCAACC 58.691 55.000 0.00 0.00 0.00 3.77
1032 1070 1.670811 CATAACATCCGCTCAACCCAC 59.329 52.381 0.00 0.00 0.00 4.61
1033 1071 0.687920 TAACATCCGCTCAACCCACA 59.312 50.000 0.00 0.00 0.00 4.17
1035 1073 1.302431 CATCCGCTCAACCCACACA 60.302 57.895 0.00 0.00 0.00 3.72
1036 1074 1.302511 ATCCGCTCAACCCACACAC 60.303 57.895 0.00 0.00 0.00 3.82
1037 1075 1.768684 ATCCGCTCAACCCACACACT 61.769 55.000 0.00 0.00 0.00 3.55
1038 1076 1.961277 CCGCTCAACCCACACACTC 60.961 63.158 0.00 0.00 0.00 3.51
1039 1077 1.961277 CGCTCAACCCACACACTCC 60.961 63.158 0.00 0.00 0.00 3.85
1098 1136 3.385384 CGCTGCTCACCCTCTCCA 61.385 66.667 0.00 0.00 0.00 3.86
1327 1368 2.799978 GCAAACTGCCGTAATTTTGCTT 59.200 40.909 9.97 0.00 46.68 3.91
1335 1376 4.505922 TGCCGTAATTTTGCTTTTCTGTTG 59.494 37.500 0.00 0.00 0.00 3.33
1493 1534 2.030562 CCACGGCTTCGACAGGTT 59.969 61.111 0.00 0.00 37.63 3.50
1515 1557 2.287373 CGTGCAATGCAACACCAAATTT 59.713 40.909 10.44 0.00 41.47 1.82
1564 1606 2.614057 CCTGCAATGTCTAATTCCGGTC 59.386 50.000 0.00 0.00 0.00 4.79
1590 1633 1.072159 GGTGCTGCCACAAGAGTCT 59.928 57.895 0.00 0.00 43.88 3.24
1669 1712 6.702329 CAGTTCTTGTTTAGAGTGGAGGTAT 58.298 40.000 0.00 0.00 33.51 2.73
1697 1740 1.792757 TTTGCTGGAGGATGCTGGGT 61.793 55.000 0.00 0.00 0.00 4.51
1768 1811 1.266867 TGCCCTCACTCTGCTGCATA 61.267 55.000 1.31 0.00 0.00 3.14
1771 1814 1.604947 CCCTCACTCTGCTGCATATCG 60.605 57.143 1.31 0.00 0.00 2.92
1819 1862 1.472082 CCACAGTTGCAAGTTGTGACA 59.528 47.619 30.98 0.00 43.68 3.58
1826 1869 3.763097 TGCAAGTTGTGACAACTTCTG 57.237 42.857 33.65 26.63 38.32 3.02
1864 1907 0.035739 TCGTAGAAACAAGGCCACCC 59.964 55.000 5.01 0.00 0.00 4.61
1943 1987 6.283694 ACTGCTGGTGTACATGTAGATAATG 58.716 40.000 5.62 0.00 0.00 1.90
1979 2023 5.947566 AGTTCAGTTCCTACTTCCTAGTCTC 59.052 44.000 0.00 0.00 35.78 3.36
1982 2026 5.017490 CAGTTCCTACTTCCTAGTCTCCAA 58.983 45.833 0.00 0.00 35.78 3.53
2065 2109 5.474876 AGCTGCACAAAAACTAGCTTCTATT 59.525 36.000 1.02 0.00 41.60 1.73
2152 2196 6.183360 GCTTGCCTTTCCTTGTTTAAATATGC 60.183 38.462 0.00 0.00 0.00 3.14
2233 2277 8.938883 ACAGTGGTAATATCCTTACATCTTGAT 58.061 33.333 0.00 0.00 0.00 2.57
2368 2412 7.407337 CGGTACCAGCATTTTAAGAAATACTC 58.593 38.462 13.54 0.00 33.78 2.59
2402 2454 4.985538 TTCTTACCTAGCAGTCTAGCAC 57.014 45.455 0.00 0.00 40.73 4.40
2571 2623 3.312146 TCATTGGTGCAAGTGTATATGCG 59.688 43.478 0.00 0.00 45.47 4.73
2634 2686 2.969821 ATGCTGGGGTGAGTGTTTTA 57.030 45.000 0.00 0.00 0.00 1.52
2963 3015 5.519722 GCTACACGCTTGGCATTTTATAAT 58.480 37.500 0.00 0.00 35.14 1.28
3106 3158 6.646267 TCATACCTTTCTAGTATGCGGTTTT 58.354 36.000 6.12 0.00 44.39 2.43
3235 3296 7.852971 TGTGCAAGTACTTAACAAGTTAACT 57.147 32.000 16.86 1.12 42.81 2.24
3432 3494 0.037326 ACAGTGTGCAGGTATCACCG 60.037 55.000 0.00 0.00 44.90 4.94
3475 3538 9.697990 TTTAGTTTCCTCTTTACTTTTGGGTTA 57.302 29.630 0.00 0.00 0.00 2.85
3980 5339 7.006509 TGATTCAGAGTTTCCCTTTTTCTCAT 58.993 34.615 0.00 0.00 0.00 2.90
4047 5406 7.971183 ACTATCTGAAGTCTTTTGGTTCTTC 57.029 36.000 0.00 0.00 37.42 2.87
4172 5532 5.412526 TTTACACTAAAGAAACTGCCACG 57.587 39.130 0.00 0.00 0.00 4.94
4182 5542 1.734163 AACTGCCACGGTATAACTGC 58.266 50.000 0.00 0.00 0.00 4.40
4285 5645 2.903784 TGGGTCTCTAGCAAAGCTGTAA 59.096 45.455 1.04 0.00 40.10 2.41
4355 5725 1.596603 CATTCGTGCATATGCCTCCA 58.403 50.000 24.54 7.19 41.18 3.86
4399 5772 4.881850 ACTCCAGCCTAAATGTTTATTCGG 59.118 41.667 0.00 0.00 0.00 4.30
4446 5819 0.953727 GAGTCAATGTGGCTGCACAA 59.046 50.000 0.50 0.00 38.69 3.33
4462 8253 4.136796 TGCACAAGTTAAAGATGACAGCT 58.863 39.130 0.00 0.00 0.00 4.24
4583 8376 8.873215 ACATGTTTTAGTGTTAGATAGATCCG 57.127 34.615 0.00 0.00 0.00 4.18
4722 9522 7.363007 GGGTTAAGAAAAAGGATCATCAGGAAC 60.363 40.741 0.00 0.00 0.00 3.62
4919 9881 8.637196 ATGATATGTCATTCTCATTTGCTGAT 57.363 30.769 0.00 0.00 42.37 2.90
5103 10071 6.216456 GGGGAGAGGATGATGGAATTATTAGT 59.784 42.308 0.00 0.00 0.00 2.24
5139 10107 2.419673 TGTAAGTTTGCCTGATGATGCG 59.580 45.455 0.00 0.00 0.00 4.73
5249 10225 0.690762 GGTTACAGCAGGAACTCCCA 59.309 55.000 4.01 0.00 34.60 4.37
5306 10282 1.266178 TTCCTCATGTCGAGAAGCCA 58.734 50.000 0.00 0.00 45.45 4.75
5351 10327 3.006728 TTTCTCGGGGGCGATGGT 61.007 61.111 0.00 0.00 0.00 3.55
5371 10347 3.637273 GGACAAGGCGGACCAGGT 61.637 66.667 0.00 0.00 39.06 4.00
5388 10364 3.341823 CAGGTTTCTTCCCTGTCATCAG 58.658 50.000 0.00 0.00 43.73 2.90
5418 10395 3.554934 TCAACATGAGGTATGCCATTCC 58.445 45.455 1.54 0.00 40.59 3.01
5482 10476 1.588404 CATCGACGTCTTACATGCACC 59.412 52.381 14.70 0.00 0.00 5.01
5484 10478 1.708027 GACGTCTTACATGCACCGC 59.292 57.895 8.70 0.00 0.00 5.68
5487 10481 1.376683 GTCTTACATGCACCGCCCA 60.377 57.895 0.00 0.00 0.00 5.36
5565 10560 1.063469 GTAACATGTACATGGCGCACC 59.937 52.381 33.32 14.93 42.91 5.01
5640 12813 2.143122 GAGCAACCGAGTTGATCAACA 58.857 47.619 33.92 1.79 45.81 3.33
5644 12819 3.684788 GCAACCGAGTTGATCAACATACT 59.315 43.478 33.92 18.04 45.28 2.12
5657 12832 3.074687 TCAACATACTTACAGGCCCCAAA 59.925 43.478 0.00 0.00 0.00 3.28
5658 12833 4.023291 CAACATACTTACAGGCCCCAAAT 58.977 43.478 0.00 0.00 0.00 2.32
5666 12841 0.251742 CAGGCCCCAAATTCACCTCA 60.252 55.000 0.00 0.00 0.00 3.86
5700 12875 3.685272 GGAAAAGGTTGCACTAGACTAGC 59.315 47.826 9.52 0.00 0.00 3.42
5730 12906 4.500499 ACAGCTATTCAGAGGCAGAAAT 57.500 40.909 0.00 0.00 0.00 2.17
5740 12916 3.325293 GAGGCAGAAATGTGTCTCTGA 57.675 47.619 5.04 0.00 44.41 3.27
5773 12949 2.159170 CGTCAGCTCCTCTTCTTTAGGG 60.159 54.545 0.00 0.00 34.66 3.53
5775 12951 2.192263 CAGCTCCTCTTCTTTAGGGGT 58.808 52.381 0.00 0.00 45.67 4.95
5776 12952 2.093235 CAGCTCCTCTTCTTTAGGGGTG 60.093 54.545 0.00 0.00 45.67 4.61
5777 12953 1.909986 GCTCCTCTTCTTTAGGGGTGT 59.090 52.381 0.00 0.00 45.67 4.16
5778 12954 2.355209 GCTCCTCTTCTTTAGGGGTGTG 60.355 54.545 0.00 0.00 45.67 3.82
5779 12955 2.907042 CTCCTCTTCTTTAGGGGTGTGT 59.093 50.000 0.00 0.00 45.67 3.72
5780 12956 2.904434 TCCTCTTCTTTAGGGGTGTGTC 59.096 50.000 0.00 0.00 45.67 3.67
5781 12957 2.027100 CCTCTTCTTTAGGGGTGTGTCC 60.027 54.545 0.00 0.00 39.96 4.02
5782 12958 1.621814 TCTTCTTTAGGGGTGTGTCCG 59.378 52.381 0.00 0.00 37.00 4.79
5783 12959 0.688487 TTCTTTAGGGGTGTGTCCGG 59.312 55.000 0.00 0.00 37.00 5.14
5784 12960 0.178926 TCTTTAGGGGTGTGTCCGGA 60.179 55.000 0.00 0.00 37.00 5.14
5785 12961 0.909623 CTTTAGGGGTGTGTCCGGAT 59.090 55.000 7.81 0.00 37.00 4.18
5786 12962 0.906775 TTTAGGGGTGTGTCCGGATC 59.093 55.000 7.81 4.89 37.00 3.36
5787 12963 0.042131 TTAGGGGTGTGTCCGGATCT 59.958 55.000 7.81 0.00 37.00 2.75
5788 12964 0.396695 TAGGGGTGTGTCCGGATCTC 60.397 60.000 7.81 5.28 37.00 2.75
5789 12965 1.987855 GGGGTGTGTCCGGATCTCA 60.988 63.158 7.81 6.06 37.00 3.27
5790 12966 1.517832 GGGTGTGTCCGGATCTCAG 59.482 63.158 7.81 0.00 37.00 3.35
5791 12967 1.153549 GGTGTGTCCGGATCTCAGC 60.154 63.158 7.81 13.95 0.00 4.26
5792 12968 1.153549 GTGTGTCCGGATCTCAGCC 60.154 63.158 7.81 0.00 0.00 4.85
5810 12986 2.317609 CGAATATTCGGCCGCAGGG 61.318 63.158 26.61 1.25 45.64 4.45
5811 12987 2.709125 CGAATATTCGGCCGCAGGGA 62.709 60.000 26.61 0.00 45.64 4.20
5871 13047 5.902613 TTGAGCACTGAAATTAATCCTGG 57.097 39.130 0.00 0.00 0.00 4.45
6134 14568 2.492449 CTTTCTGGTCGAGCTCGCCA 62.492 60.000 34.31 34.31 40.97 5.69
6310 14750 8.563502 TGATCCTAGGTAGTTTTCCTAACTCTA 58.436 37.037 9.08 0.00 39.64 2.43
6541 15829 0.183492 TTTGCAGGGTGAGAAGCTGT 59.817 50.000 0.00 0.00 0.00 4.40
6704 16013 2.886523 TGCTGTTTGATGCTGCTACTTT 59.113 40.909 0.00 0.00 0.00 2.66
6763 16084 1.254975 TTGCTACTGCTCGTGGGCTA 61.255 55.000 0.00 0.00 40.48 3.93
6789 16110 5.073428 TGTACTTCAGAGAAAGAGAGAGCA 58.927 41.667 0.00 0.00 0.00 4.26
6841 16893 3.543680 ACCCTACTGTTCATCAATCCG 57.456 47.619 0.00 0.00 0.00 4.18
6880 16932 1.272781 GTCTAGCTAGCTTGCACACG 58.727 55.000 24.88 7.20 34.99 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.596082 TTTCTGGGCTACGCTTTTGC 59.404 50.000 0.00 0.00 43.23 3.68
3 4 4.900635 ATATTTCTGGGCTACGCTTTTG 57.099 40.909 0.00 0.00 0.00 2.44
5 6 5.070580 AGACTATATTTCTGGGCTACGCTTT 59.929 40.000 0.00 0.00 0.00 3.51
7 8 4.153411 AGACTATATTTCTGGGCTACGCT 58.847 43.478 0.00 0.00 0.00 5.07
8 9 4.522722 AGACTATATTTCTGGGCTACGC 57.477 45.455 0.00 0.00 0.00 4.42
9 10 7.494625 TCAAAAAGACTATATTTCTGGGCTACG 59.505 37.037 0.00 0.00 0.00 3.51
10 11 8.732746 TCAAAAAGACTATATTTCTGGGCTAC 57.267 34.615 0.00 0.00 0.00 3.58
11 12 9.174166 GTTCAAAAAGACTATATTTCTGGGCTA 57.826 33.333 0.00 0.00 0.00 3.93
13 14 8.056407 AGTTCAAAAAGACTATATTTCTGGGC 57.944 34.615 0.00 0.00 0.00 5.36
24 25 9.273016 CATACCTTGAGAAGTTCAAAAAGACTA 57.727 33.333 5.50 0.58 44.84 2.59
25 26 7.775561 ACATACCTTGAGAAGTTCAAAAAGACT 59.224 33.333 5.50 0.00 44.84 3.24
26 27 7.931275 ACATACCTTGAGAAGTTCAAAAAGAC 58.069 34.615 5.50 0.00 44.84 3.01
27 28 9.052759 GTACATACCTTGAGAAGTTCAAAAAGA 57.947 33.333 5.50 0.00 44.84 2.52
28 29 9.057089 AGTACATACCTTGAGAAGTTCAAAAAG 57.943 33.333 5.50 5.58 44.84 2.27
29 30 8.974060 AGTACATACCTTGAGAAGTTCAAAAA 57.026 30.769 5.50 0.00 44.84 1.94
31 32 9.653287 CATAGTACATACCTTGAGAAGTTCAAA 57.347 33.333 5.50 0.00 44.84 2.69
32 33 7.764443 GCATAGTACATACCTTGAGAAGTTCAA 59.236 37.037 5.50 0.00 43.40 2.69
33 34 7.124298 AGCATAGTACATACCTTGAGAAGTTCA 59.876 37.037 5.50 0.00 0.00 3.18
34 35 7.493367 AGCATAGTACATACCTTGAGAAGTTC 58.507 38.462 0.00 0.00 0.00 3.01
35 36 7.418025 GGAGCATAGTACATACCTTGAGAAGTT 60.418 40.741 0.00 0.00 0.00 2.66
36 37 6.041069 GGAGCATAGTACATACCTTGAGAAGT 59.959 42.308 0.00 0.00 0.00 3.01
37 38 6.040955 TGGAGCATAGTACATACCTTGAGAAG 59.959 42.308 0.00 0.00 0.00 2.85
38 39 5.897250 TGGAGCATAGTACATACCTTGAGAA 59.103 40.000 0.00 0.00 0.00 2.87
39 40 5.454966 TGGAGCATAGTACATACCTTGAGA 58.545 41.667 0.00 0.00 0.00 3.27
40 41 5.791336 TGGAGCATAGTACATACCTTGAG 57.209 43.478 0.00 0.00 0.00 3.02
41 42 6.077993 AGATGGAGCATAGTACATACCTTGA 58.922 40.000 0.00 0.00 0.00 3.02
42 43 6.352016 AGATGGAGCATAGTACATACCTTG 57.648 41.667 0.00 0.00 0.00 3.61
43 44 7.242359 ACTAGATGGAGCATAGTACATACCTT 58.758 38.462 0.00 0.00 0.00 3.50
44 45 6.795590 ACTAGATGGAGCATAGTACATACCT 58.204 40.000 0.00 0.00 0.00 3.08
45 46 8.754991 ATACTAGATGGAGCATAGTACATACC 57.245 38.462 0.00 0.00 35.45 2.73
47 48 9.848710 GGTATACTAGATGGAGCATAGTACATA 57.151 37.037 2.25 0.00 35.45 2.29
48 49 8.336987 TGGTATACTAGATGGAGCATAGTACAT 58.663 37.037 2.25 0.00 35.45 2.29
49 50 7.696017 TGGTATACTAGATGGAGCATAGTACA 58.304 38.462 2.25 0.00 35.45 2.90
50 51 8.625651 CATGGTATACTAGATGGAGCATAGTAC 58.374 40.741 2.25 0.00 35.45 2.73
51 52 8.336987 ACATGGTATACTAGATGGAGCATAGTA 58.663 37.037 2.25 0.00 36.67 1.82
52 53 7.185565 ACATGGTATACTAGATGGAGCATAGT 58.814 38.462 2.25 0.00 34.29 2.12
53 54 7.652524 ACATGGTATACTAGATGGAGCATAG 57.347 40.000 2.25 0.00 0.00 2.23
54 55 7.780271 CCTACATGGTATACTAGATGGAGCATA 59.220 40.741 13.01 0.57 0.00 3.14
55 56 6.609212 CCTACATGGTATACTAGATGGAGCAT 59.391 42.308 13.01 0.00 0.00 3.79
56 57 5.952347 CCTACATGGTATACTAGATGGAGCA 59.048 44.000 13.01 0.00 0.00 4.26
57 58 5.163499 GCCTACATGGTATACTAGATGGAGC 60.163 48.000 13.01 9.27 38.35 4.70
58 59 6.191315 AGCCTACATGGTATACTAGATGGAG 58.809 44.000 2.25 8.62 38.35 3.86
59 60 6.153942 AGCCTACATGGTATACTAGATGGA 57.846 41.667 2.25 0.00 38.35 3.41
60 61 6.665680 AGAAGCCTACATGGTATACTAGATGG 59.334 42.308 2.25 0.15 38.35 3.51
61 62 7.710676 AGAAGCCTACATGGTATACTAGATG 57.289 40.000 2.25 5.81 38.35 2.90
62 63 8.728596 AAAGAAGCCTACATGGTATACTAGAT 57.271 34.615 2.25 0.00 38.35 1.98
63 64 9.824216 ATAAAGAAGCCTACATGGTATACTAGA 57.176 33.333 2.25 0.00 38.35 2.43
64 65 9.862371 CATAAAGAAGCCTACATGGTATACTAG 57.138 37.037 2.25 0.00 38.35 2.57
65 66 8.311836 GCATAAAGAAGCCTACATGGTATACTA 58.688 37.037 2.25 0.00 38.35 1.82
66 67 7.162082 GCATAAAGAAGCCTACATGGTATACT 58.838 38.462 2.25 0.00 38.35 2.12
67 68 6.934645 TGCATAAAGAAGCCTACATGGTATAC 59.065 38.462 0.00 0.00 38.35 1.47
68 69 7.073457 TGCATAAAGAAGCCTACATGGTATA 57.927 36.000 0.00 0.00 38.35 1.47
69 70 5.940617 TGCATAAAGAAGCCTACATGGTAT 58.059 37.500 0.00 0.00 38.35 2.73
70 71 5.366482 TGCATAAAGAAGCCTACATGGTA 57.634 39.130 0.00 0.00 38.35 3.25
71 72 4.235079 TGCATAAAGAAGCCTACATGGT 57.765 40.909 0.00 0.00 38.35 3.55
72 73 5.581126 TTTGCATAAAGAAGCCTACATGG 57.419 39.130 0.00 0.00 39.35 3.66
73 74 6.624423 AGTTTTGCATAAAGAAGCCTACATG 58.376 36.000 0.00 0.00 0.00 3.21
74 75 6.840780 AGTTTTGCATAAAGAAGCCTACAT 57.159 33.333 0.00 0.00 0.00 2.29
75 76 6.446318 CAAGTTTTGCATAAAGAAGCCTACA 58.554 36.000 0.00 0.00 0.00 2.74
76 77 5.863935 CCAAGTTTTGCATAAAGAAGCCTAC 59.136 40.000 0.00 0.00 0.00 3.18
77 78 5.772672 TCCAAGTTTTGCATAAAGAAGCCTA 59.227 36.000 0.00 0.00 0.00 3.93
78 79 4.588528 TCCAAGTTTTGCATAAAGAAGCCT 59.411 37.500 0.00 0.00 0.00 4.58
79 80 4.686091 GTCCAAGTTTTGCATAAAGAAGCC 59.314 41.667 0.00 0.00 0.00 4.35
80 81 5.532557 AGTCCAAGTTTTGCATAAAGAAGC 58.467 37.500 0.00 0.00 0.00 3.86
81 82 9.696917 ATTAAGTCCAAGTTTTGCATAAAGAAG 57.303 29.630 0.00 0.00 0.00 2.85
83 84 9.474920 CAATTAAGTCCAAGTTTTGCATAAAGA 57.525 29.630 0.00 0.00 0.00 2.52
84 85 9.474920 TCAATTAAGTCCAAGTTTTGCATAAAG 57.525 29.630 0.00 0.00 0.00 1.85
85 86 9.474920 CTCAATTAAGTCCAAGTTTTGCATAAA 57.525 29.630 0.00 0.00 0.00 1.40
86 87 8.855110 TCTCAATTAAGTCCAAGTTTTGCATAA 58.145 29.630 0.00 0.00 0.00 1.90
87 88 8.402798 TCTCAATTAAGTCCAAGTTTTGCATA 57.597 30.769 0.00 0.00 0.00 3.14
88 89 7.288810 TCTCAATTAAGTCCAAGTTTTGCAT 57.711 32.000 0.00 0.00 0.00 3.96
89 90 6.707440 TCTCAATTAAGTCCAAGTTTTGCA 57.293 33.333 0.00 0.00 0.00 4.08
90 91 8.593492 AATTCTCAATTAAGTCCAAGTTTTGC 57.407 30.769 0.00 0.00 0.00 3.68
120 121 9.614792 AACACACTAAAATTCTCAACTAAGTCT 57.385 29.630 0.00 0.00 0.00 3.24
127 128 9.997482 TCTTACAAACACACTAAAATTCTCAAC 57.003 29.630 0.00 0.00 0.00 3.18
128 129 9.997482 GTCTTACAAACACACTAAAATTCTCAA 57.003 29.630 0.00 0.00 0.00 3.02
129 130 8.617809 GGTCTTACAAACACACTAAAATTCTCA 58.382 33.333 0.00 0.00 0.00 3.27
130 131 8.617809 TGGTCTTACAAACACACTAAAATTCTC 58.382 33.333 0.00 0.00 0.00 2.87
131 132 8.514330 TGGTCTTACAAACACACTAAAATTCT 57.486 30.769 0.00 0.00 0.00 2.40
139 140 9.959721 AGATTAATATGGTCTTACAAACACACT 57.040 29.630 0.00 0.00 0.00 3.55
220 221 1.532078 GGTCCGCCCTTCCCAAAAA 60.532 57.895 0.00 0.00 0.00 1.94
221 222 2.116556 GGTCCGCCCTTCCCAAAA 59.883 61.111 0.00 0.00 0.00 2.44
222 223 3.179339 TGGTCCGCCCTTCCCAAA 61.179 61.111 0.00 0.00 0.00 3.28
223 224 3.961414 GTGGTCCGCCCTTCCCAA 61.961 66.667 0.00 0.00 0.00 4.12
231 232 3.607370 GAGAACAGGGTGGTCCGCC 62.607 68.421 13.61 13.61 33.71 6.13
232 233 2.047179 GAGAACAGGGTGGTCCGC 60.047 66.667 0.00 0.00 33.71 5.54
233 234 0.107831 TTTGAGAACAGGGTGGTCCG 59.892 55.000 0.00 0.00 33.71 4.79
234 235 2.162681 CATTTGAGAACAGGGTGGTCC 58.837 52.381 0.00 0.00 33.71 4.46
235 236 1.541588 GCATTTGAGAACAGGGTGGTC 59.458 52.381 0.00 0.00 33.32 4.02
236 237 1.145738 AGCATTTGAGAACAGGGTGGT 59.854 47.619 0.00 0.00 0.00 4.16
237 238 1.915141 AGCATTTGAGAACAGGGTGG 58.085 50.000 0.00 0.00 0.00 4.61
238 239 2.421424 GCTAGCATTTGAGAACAGGGTG 59.579 50.000 10.63 0.00 0.00 4.61
239 240 2.307098 AGCTAGCATTTGAGAACAGGGT 59.693 45.455 18.83 0.00 0.00 4.34
240 241 2.941720 GAGCTAGCATTTGAGAACAGGG 59.058 50.000 18.83 0.00 0.00 4.45
241 242 2.941720 GGAGCTAGCATTTGAGAACAGG 59.058 50.000 18.83 0.00 0.00 4.00
242 243 2.606725 CGGAGCTAGCATTTGAGAACAG 59.393 50.000 18.83 0.00 0.00 3.16
243 244 2.028112 ACGGAGCTAGCATTTGAGAACA 60.028 45.455 18.83 0.00 0.00 3.18
244 245 2.605366 GACGGAGCTAGCATTTGAGAAC 59.395 50.000 18.83 0.00 0.00 3.01
245 246 2.233676 TGACGGAGCTAGCATTTGAGAA 59.766 45.455 18.83 0.00 0.00 2.87
246 247 1.824852 TGACGGAGCTAGCATTTGAGA 59.175 47.619 18.83 0.00 0.00 3.27
247 248 1.929836 GTGACGGAGCTAGCATTTGAG 59.070 52.381 18.83 4.39 0.00 3.02
248 249 1.550524 AGTGACGGAGCTAGCATTTGA 59.449 47.619 18.83 0.00 0.00 2.69
249 250 1.662629 CAGTGACGGAGCTAGCATTTG 59.337 52.381 18.83 6.11 0.00 2.32
250 251 1.406069 CCAGTGACGGAGCTAGCATTT 60.406 52.381 18.83 0.00 0.00 2.32
251 252 0.176680 CCAGTGACGGAGCTAGCATT 59.823 55.000 18.83 0.00 0.00 3.56
252 253 1.819229 CCAGTGACGGAGCTAGCAT 59.181 57.895 18.83 1.44 0.00 3.79
253 254 3.006756 GCCAGTGACGGAGCTAGCA 62.007 63.158 18.83 0.00 0.00 3.49
254 255 2.202810 GCCAGTGACGGAGCTAGC 60.203 66.667 6.62 6.62 0.00 3.42
255 256 1.140589 CAGCCAGTGACGGAGCTAG 59.859 63.158 0.00 0.00 33.33 3.42
256 257 3.006756 GCAGCCAGTGACGGAGCTA 62.007 63.158 0.00 0.00 33.33 3.32
257 258 4.385405 GCAGCCAGTGACGGAGCT 62.385 66.667 0.00 0.00 35.52 4.09
258 259 3.965539 ATGCAGCCAGTGACGGAGC 62.966 63.158 0.00 2.13 0.00 4.70
259 260 1.812922 GATGCAGCCAGTGACGGAG 60.813 63.158 0.00 0.00 0.00 4.63
260 261 1.902765 ATGATGCAGCCAGTGACGGA 61.903 55.000 0.00 0.00 0.00 4.69
261 262 1.434622 GATGATGCAGCCAGTGACGG 61.435 60.000 0.00 0.00 0.00 4.79
262 263 0.461516 AGATGATGCAGCCAGTGACG 60.462 55.000 0.00 0.00 0.00 4.35
263 264 2.208431 GTAGATGATGCAGCCAGTGAC 58.792 52.381 0.00 0.00 0.00 3.67
264 265 1.832998 TGTAGATGATGCAGCCAGTGA 59.167 47.619 0.00 0.00 0.00 3.41
265 266 2.320745 TGTAGATGATGCAGCCAGTG 57.679 50.000 0.00 0.00 0.00 3.66
266 267 3.572632 AATGTAGATGATGCAGCCAGT 57.427 42.857 0.00 0.00 0.00 4.00
267 268 3.550233 GCAAATGTAGATGATGCAGCCAG 60.550 47.826 0.00 0.00 37.00 4.85
268 269 2.359848 GCAAATGTAGATGATGCAGCCA 59.640 45.455 0.00 0.00 37.00 4.75
269 270 2.359848 TGCAAATGTAGATGATGCAGCC 59.640 45.455 0.00 0.00 41.67 4.85
270 271 3.703286 TGCAAATGTAGATGATGCAGC 57.297 42.857 8.88 0.00 41.67 5.25
284 285 3.062639 GTGACGATGAAGACGATGCAAAT 59.937 43.478 0.00 0.00 34.70 2.32
290 291 2.166459 ACATGGTGACGATGAAGACGAT 59.834 45.455 14.55 0.00 34.70 3.73
306 307 0.803768 CTCGACTTCAGCGGACATGG 60.804 60.000 0.00 0.00 0.00 3.66
314 315 1.215655 ACAACACGCTCGACTTCAGC 61.216 55.000 0.00 0.00 0.00 4.26
316 317 0.933047 CGACAACACGCTCGACTTCA 60.933 55.000 0.00 0.00 31.24 3.02
366 367 2.741985 CAGCGGTGGCGTCATCAA 60.742 61.111 6.74 0.00 46.35 2.57
394 395 4.451150 CAAGTAGAGGCCGCGGCA 62.451 66.667 46.88 27.90 44.11 5.69
407 408 2.677228 CCCTCCATTCGGCCAAGT 59.323 61.111 2.24 0.00 0.00 3.16
417 418 5.010282 GGATAAACGAATTATGCCCTCCAT 58.990 41.667 0.00 0.00 36.59 3.41
433 434 9.860898 AACAGAATCAATAAAAGCAGGATAAAC 57.139 29.630 0.00 0.00 0.00 2.01
441 442 7.665690 TGGCTAAAACAGAATCAATAAAAGCA 58.334 30.769 0.00 0.00 0.00 3.91
446 447 7.408756 AGCATGGCTAAAACAGAATCAATAA 57.591 32.000 0.00 0.00 36.99 1.40
510 515 4.518217 GTTGATATCGAATCACCAAAGCG 58.482 43.478 9.02 0.00 0.00 4.68
516 521 5.464965 AAACACGTTGATATCGAATCACC 57.535 39.130 9.02 3.47 0.00 4.02
522 527 7.224949 TGGCATAAATAAACACGTTGATATCGA 59.775 33.333 0.00 0.00 0.00 3.59
524 529 9.677567 ATTGGCATAAATAAACACGTTGATATC 57.322 29.630 0.00 0.00 0.00 1.63
531 536 6.509418 AGACATTGGCATAAATAAACACGT 57.491 33.333 0.00 0.00 0.00 4.49
533 538 9.801873 AACATAGACATTGGCATAAATAAACAC 57.198 29.630 0.00 0.00 0.00 3.32
600 617 3.193479 TGTATGTGGAGTGTGCTGAGTAG 59.807 47.826 0.00 0.00 0.00 2.57
601 618 3.161866 TGTATGTGGAGTGTGCTGAGTA 58.838 45.455 0.00 0.00 0.00 2.59
602 619 1.970640 TGTATGTGGAGTGTGCTGAGT 59.029 47.619 0.00 0.00 0.00 3.41
603 620 2.749280 TGTATGTGGAGTGTGCTGAG 57.251 50.000 0.00 0.00 0.00 3.35
604 621 2.355007 CCATGTATGTGGAGTGTGCTGA 60.355 50.000 0.00 0.00 42.02 4.26
605 622 2.011947 CCATGTATGTGGAGTGTGCTG 58.988 52.381 0.00 0.00 42.02 4.41
606 623 1.908619 TCCATGTATGTGGAGTGTGCT 59.091 47.619 0.00 0.00 43.20 4.40
607 624 2.401583 TCCATGTATGTGGAGTGTGC 57.598 50.000 0.00 0.00 43.20 4.57
724 755 1.669440 GAACCCTGTAGCACCGTCA 59.331 57.895 0.00 0.00 0.00 4.35
783 814 2.159128 ACACATCGATTCCTGAGCTGAG 60.159 50.000 0.00 0.00 0.00 3.35
784 815 1.827344 ACACATCGATTCCTGAGCTGA 59.173 47.619 0.00 0.00 0.00 4.26
785 816 2.200067 GACACATCGATTCCTGAGCTG 58.800 52.381 0.00 0.00 0.00 4.24
786 817 2.593346 GACACATCGATTCCTGAGCT 57.407 50.000 0.00 0.00 0.00 4.09
896 927 2.353030 GAAACGGTGGCACGCAAC 60.353 61.111 12.17 0.00 43.02 4.17
941 972 4.771356 GCTGCCGCTACGTCGACA 62.771 66.667 17.16 0.00 0.00 4.35
1027 1065 1.445942 CTCGTTGGAGTGTGTGGGT 59.554 57.895 0.00 0.00 35.48 4.51
1029 1067 2.310233 CGCTCGTTGGAGTGTGTGG 61.310 63.158 0.00 0.00 44.09 4.17
1056 1094 0.252197 ATTGGTGGAGTTAGCCGGTC 59.748 55.000 1.90 0.00 0.00 4.79
1295 1336 1.373570 GCAGTTTGCGGAGAAGCTAT 58.626 50.000 0.00 0.00 38.13 2.97
1327 1368 5.730550 ACTACGGCAGATTATCAACAGAAA 58.269 37.500 0.00 0.00 0.00 2.52
1335 1376 4.304939 GGGTGTTACTACGGCAGATTATC 58.695 47.826 0.00 0.00 0.00 1.75
1371 1412 2.500098 CTGGAGTGGGAATCGGTTAAGA 59.500 50.000 0.00 0.00 0.00 2.10
1374 1415 1.829222 GTCTGGAGTGGGAATCGGTTA 59.171 52.381 0.00 0.00 0.00 2.85
1493 1534 0.457443 TTTGGTGTTGCATTGCACGA 59.543 45.000 11.66 0.00 38.71 4.35
1564 1606 2.036098 TGGCAGCACCCCATTGAG 59.964 61.111 0.00 0.00 37.83 3.02
1590 1633 8.458843 GCTAAATGCATGGTAAAAGTAGAAGAA 58.541 33.333 0.00 0.00 42.31 2.52
1637 1680 7.360438 CCACTCTAAACAAGAACTGCATCTAAC 60.360 40.741 0.00 0.00 32.46 2.34
1669 1712 1.079825 TCCTCCAGCAAAGGGTAGGTA 59.920 52.381 0.00 0.00 34.46 3.08
1697 1740 1.059584 TCCACAGCCCAAGTCTCCAA 61.060 55.000 0.00 0.00 0.00 3.53
1754 1797 2.543641 CAACGATATGCAGCAGAGTGA 58.456 47.619 0.00 0.00 0.00 3.41
1768 1811 8.405531 CACAATTATAGAACCAATTCCAACGAT 58.594 33.333 0.00 0.00 35.18 3.73
1771 1814 7.547227 AGCACAATTATAGAACCAATTCCAAC 58.453 34.615 0.00 0.00 35.18 3.77
1803 1846 3.758554 AGAAGTTGTCACAACTTGCAACT 59.241 39.130 35.29 23.87 46.06 3.16
1805 1848 3.755905 TCAGAAGTTGTCACAACTTGCAA 59.244 39.130 35.29 19.04 40.27 4.08
1864 1907 3.060940 CGCGCTTAGACACAATATCACAG 60.061 47.826 5.56 0.00 0.00 3.66
1943 1987 3.686726 GGAACTGAACTCATCACATGGAC 59.313 47.826 0.00 0.00 33.47 4.02
1979 2023 7.086376 CACTCTGAATTAAACAGGACATTTGG 58.914 38.462 11.34 0.00 36.22 3.28
1982 2026 5.711976 CCCACTCTGAATTAAACAGGACATT 59.288 40.000 11.34 0.00 36.22 2.71
2065 2109 5.076873 CAGAAACCCAGTCCTTATTTTGGA 58.923 41.667 0.00 0.00 32.34 3.53
2128 2172 7.099120 AGCATATTTAAACAAGGAAAGGCAAG 58.901 34.615 0.00 0.00 0.00 4.01
2233 2277 7.356089 TCTCCAGAACTACACAAAGAGTTTA 57.644 36.000 0.00 0.00 36.04 2.01
2236 2280 5.046950 GGATCTCCAGAACTACACAAAGAGT 60.047 44.000 0.00 0.00 35.64 3.24
2368 2412 6.045955 GCTAGGTAAGAAATGAAGAGGACAG 58.954 44.000 0.00 0.00 0.00 3.51
2402 2454 8.299570 TCTTTAGTTTTTGGTACTACTCCTACG 58.700 37.037 0.00 0.00 0.00 3.51
2571 2623 2.952310 GGTCATATCTTTTGTGCCCTCC 59.048 50.000 0.00 0.00 0.00 4.30
2707 2759 6.471198 GGACACAAAAACTAAACAGTAACAGC 59.529 38.462 0.00 0.00 0.00 4.40
3148 3201 2.710760 ACACAACAACACGCATTTACG 58.289 42.857 0.00 0.00 39.50 3.18
3235 3296 2.559231 ACACATCAAATGCAGCATGACA 59.441 40.909 9.18 0.00 39.69 3.58
3333 3394 2.170607 GGGATGCAAAGCACTACCTCTA 59.829 50.000 0.00 0.00 43.04 2.43
3343 3404 7.609056 AGAAATATATGATTGGGATGCAAAGC 58.391 34.615 0.00 0.00 0.00 3.51
3432 3494 1.013524 AAATGGTTCCAATTGCGCGC 61.014 50.000 27.26 27.26 0.00 6.86
3653 3716 6.375174 AGCAACATTTAGCATATGTGAACAGA 59.625 34.615 4.29 0.00 36.41 3.41
4065 5424 2.935201 CTGAAGGAAGCACTATCAGCAC 59.065 50.000 0.00 0.00 32.05 4.40
4066 5425 3.257469 CTGAAGGAAGCACTATCAGCA 57.743 47.619 0.00 0.00 32.05 4.41
4172 5532 4.674281 AGCTCTGTAAGGCAGTTATACC 57.326 45.455 0.00 0.00 45.23 2.73
4253 5613 3.682718 GCTAGAGACCCATTTGCAGCTTA 60.683 47.826 0.00 0.00 0.00 3.09
4285 5645 6.378280 GGATCATAGGGTGAAAGTGATGTTTT 59.622 38.462 0.00 0.00 40.97 2.43
4355 5725 2.779430 TGATACTGCCCAAGGTGATCAT 59.221 45.455 0.00 0.00 0.00 2.45
4399 5772 4.214437 CGATGTTGCAGAAAGAACAAGAC 58.786 43.478 0.00 0.00 35.76 3.01
4446 5819 9.323985 GATGATCTTTAGCTGTCATCTTTAACT 57.676 33.333 14.92 0.00 42.17 2.24
4578 8371 9.745880 TGTCTTAGATTTGTCTAAATACGGATC 57.254 33.333 0.26 0.00 36.66 3.36
4900 9862 7.868906 TGATAATCAGCAAATGAGAATGACA 57.131 32.000 0.00 0.00 42.53 3.58
5016 9984 6.879458 AACAGGACACTGGTCAGAATTATTAC 59.121 38.462 4.84 0.00 42.11 1.89
5103 10071 8.134895 GGCAAACTTACATATGCTTGCTTATTA 58.865 33.333 18.46 0.00 39.25 0.98
5249 10225 1.618343 ACCTGCCTTAAAATTGCGCTT 59.382 42.857 9.73 0.00 0.00 4.68
5306 10282 3.590466 ATGCTTTGCCGCCTCCCTT 62.590 57.895 0.00 0.00 0.00 3.95
5351 10327 3.164977 TGGTCCGCCTTGTCCACA 61.165 61.111 0.00 0.00 35.27 4.17
5371 10347 2.909006 AGAGCTGATGACAGGGAAGAAA 59.091 45.455 0.00 0.00 43.62 2.52
5388 10364 3.550437 ACCTCATGTTGATACCAGAGC 57.450 47.619 0.00 0.00 0.00 4.09
5436 10413 3.695606 GCAGCAGGACGGTGGAGA 61.696 66.667 0.00 0.00 43.61 3.71
5482 10476 4.124351 CCTGCAGCACATTGGGCG 62.124 66.667 8.66 1.80 36.08 6.13
5484 10478 2.345760 GGTCCTGCAGCACATTGGG 61.346 63.158 10.57 0.00 0.00 4.12
5487 10481 2.360350 CGGGTCCTGCAGCACATT 60.360 61.111 10.57 0.00 0.00 2.71
5519 10513 3.541713 CGCTAGCCTGAGGGGTCC 61.542 72.222 9.66 0.00 43.01 4.46
5565 10560 1.130613 GCGAGCGTAAACAGCACAG 59.869 57.895 0.00 0.00 37.01 3.66
5640 12813 4.278310 GTGAATTTGGGGCCTGTAAGTAT 58.722 43.478 0.84 0.00 0.00 2.12
5644 12819 1.431243 AGGTGAATTTGGGGCCTGTAA 59.569 47.619 0.84 0.00 0.00 2.41
5657 12832 0.544357 TCTCCACGGGTGAGGTGAAT 60.544 55.000 0.00 0.00 37.60 2.57
5658 12833 0.544357 ATCTCCACGGGTGAGGTGAA 60.544 55.000 0.00 0.00 37.60 3.18
5666 12841 0.328258 CCTTTTCCATCTCCACGGGT 59.672 55.000 0.00 0.00 0.00 5.28
5700 12875 4.328440 CCTCTGAATAGCTGTTTGAGTTCG 59.672 45.833 18.44 6.83 0.00 3.95
5730 12906 0.877743 CGAGCAGAGTCAGAGACACA 59.122 55.000 0.00 0.00 34.60 3.72
5740 12916 2.983930 GCTGACGGACGAGCAGAGT 61.984 63.158 18.03 0.00 35.15 3.24
5773 12949 1.153549 GCTGAGATCCGGACACACC 60.154 63.158 6.12 1.26 0.00 4.16
5774 12950 1.153549 GGCTGAGATCCGGACACAC 60.154 63.158 6.12 3.42 0.00 3.82
5775 12951 2.710902 CGGCTGAGATCCGGACACA 61.711 63.158 6.12 6.59 42.99 3.72
5776 12952 1.945354 TTCGGCTGAGATCCGGACAC 61.945 60.000 6.12 3.95 46.43 3.67
5777 12953 1.043116 ATTCGGCTGAGATCCGGACA 61.043 55.000 6.12 0.00 46.43 4.02
5778 12954 0.959553 TATTCGGCTGAGATCCGGAC 59.040 55.000 6.12 0.11 46.43 4.79
5779 12955 1.924731 ATATTCGGCTGAGATCCGGA 58.075 50.000 6.61 6.61 46.43 5.14
5780 12956 2.611518 GAATATTCGGCTGAGATCCGG 58.388 52.381 0.00 0.00 46.43 5.14
5781 12957 2.254459 CGAATATTCGGCTGAGATCCG 58.746 52.381 26.61 0.52 46.30 4.18
5793 12969 0.534203 TTCCCTGCGGCCGAATATTC 60.534 55.000 33.48 10.79 0.00 1.75
5794 12970 0.818040 GTTCCCTGCGGCCGAATATT 60.818 55.000 33.48 0.00 0.00 1.28
5795 12971 1.227853 GTTCCCTGCGGCCGAATAT 60.228 57.895 33.48 0.00 0.00 1.28
5796 12972 2.188469 GTTCCCTGCGGCCGAATA 59.812 61.111 33.48 13.53 0.00 1.75
5802 12978 4.681978 ACACTCGTTCCCTGCGGC 62.682 66.667 0.00 0.00 0.00 6.53
5803 12979 2.709125 TTCACACTCGTTCCCTGCGG 62.709 60.000 0.00 0.00 0.00 5.69
5804 12980 0.878523 TTTCACACTCGTTCCCTGCG 60.879 55.000 0.00 0.00 0.00 5.18
5805 12981 1.523758 ATTTCACACTCGTTCCCTGC 58.476 50.000 0.00 0.00 0.00 4.85
5806 12982 4.537015 GAAAATTTCACACTCGTTCCCTG 58.463 43.478 0.11 0.00 0.00 4.45
5807 12983 3.568430 GGAAAATTTCACACTCGTTCCCT 59.432 43.478 8.09 0.00 0.00 4.20
5808 12984 3.316868 TGGAAAATTTCACACTCGTTCCC 59.683 43.478 8.09 0.00 33.58 3.97
5809 12985 4.561735 TGGAAAATTTCACACTCGTTCC 57.438 40.909 8.09 0.00 34.83 3.62
5810 12986 5.816919 TCTTGGAAAATTTCACACTCGTTC 58.183 37.500 8.09 0.00 0.00 3.95
5811 12987 5.828299 TCTTGGAAAATTTCACACTCGTT 57.172 34.783 8.09 0.00 0.00 3.85
5812 12988 7.687941 ATATCTTGGAAAATTTCACACTCGT 57.312 32.000 8.09 0.00 0.00 4.18
5813 12989 8.970691 AAATATCTTGGAAAATTTCACACTCG 57.029 30.769 8.09 0.00 0.00 4.18
5815 12991 9.918630 CAGAAATATCTTGGAAAATTTCACACT 57.081 29.630 8.09 0.00 39.63 3.55
5816 12992 9.912634 TCAGAAATATCTTGGAAAATTTCACAC 57.087 29.630 8.09 0.00 39.63 3.82
5871 13047 6.142259 TCCTCTACTCCCTCATAATCTACC 57.858 45.833 0.00 0.00 0.00 3.18
6043 13229 5.075493 AGGAGTAGGAGTAAAACGTGAAGA 58.925 41.667 0.00 0.00 0.00 2.87
6162 14596 0.976641 CCGCCTATTCCTATGGCTGA 59.023 55.000 0.00 0.00 44.09 4.26
6263 14702 5.445069 TCAAGGACTCACTGGAAAAATGAA 58.555 37.500 0.00 0.00 0.00 2.57
6323 14763 1.616865 AGGAATCGAACCAGAACGACA 59.383 47.619 13.17 0.00 41.17 4.35
6514 14974 4.524802 TCTCACCCTGCAAATATGGAAT 57.475 40.909 0.00 0.00 0.00 3.01
6541 15829 0.183492 AAGGCACAAGAAGGCAGTGA 59.817 50.000 0.00 0.00 35.33 3.41
6704 16013 2.481952 GCCAACAAACAGCAAACAACAA 59.518 40.909 0.00 0.00 0.00 2.83
6763 16084 5.636123 TCTCTCTTTCTCTGAAGTACAGGT 58.364 41.667 0.00 0.00 45.76 4.00
6841 16893 0.179103 AAGCACACAAGCAAACTGCC 60.179 50.000 0.00 0.00 46.52 4.85
6880 16932 2.109425 ATCACCCAGGAAAGTTACGC 57.891 50.000 0.00 0.00 0.00 4.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.