Multiple sequence alignment - TraesCS2B01G203900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G203900 chr2B 100.000 4478 0 0 1 4478 183318939 183314462 0.000000e+00 8270.0
1 TraesCS2B01G203900 chr2B 100.000 33 0 0 1 33 688415764 688415796 1.340000e-05 62.1
2 TraesCS2B01G203900 chr2A 91.655 2181 110 24 2331 4478 136165884 136163743 0.000000e+00 2953.0
3 TraesCS2B01G203900 chr2A 91.895 1937 116 21 387 2313 136167776 136165871 0.000000e+00 2669.0
4 TraesCS2B01G203900 chr2A 88.187 364 26 8 3535 3890 136162566 136162212 6.930000e-113 418.0
5 TraesCS2B01G203900 chr2A 100.000 137 0 0 266 402 136167929 136167793 2.070000e-63 254.0
6 TraesCS2B01G203900 chr2A 92.683 82 6 0 2564 2645 678165578 678165497 7.870000e-23 119.0
7 TraesCS2B01G203900 chr2A 97.143 35 0 1 1 34 16296973 16297007 1.740000e-04 58.4
8 TraesCS2B01G203900 chr2D 89.452 1934 109 41 183 2065 129963936 129962047 0.000000e+00 2353.0
9 TraesCS2B01G203900 chr2D 91.534 1571 85 19 2338 3888 129961976 129960434 0.000000e+00 2121.0
10 TraesCS2B01G203900 chr2D 95.178 394 13 2 4091 4478 129960028 129959635 6.360000e-173 617.0
11 TraesCS2B01G203900 chr2D 88.957 163 11 5 30 188 129964116 129963957 1.270000e-45 195.0
12 TraesCS2B01G203900 chr1B 81.481 459 56 14 1494 1926 3921902 3921447 2.560000e-92 350.0
13 TraesCS2B01G203900 chr7B 79.506 405 48 16 1494 1871 77188468 77188864 5.750000e-64 255.0
14 TraesCS2B01G203900 chr7B 92.683 82 6 0 2564 2645 684145600 684145681 7.870000e-23 119.0
15 TraesCS2B01G203900 chr5A 92.414 145 8 3 2894 3038 44953944 44954085 2.110000e-48 204.0
16 TraesCS2B01G203900 chr5A 91.724 145 9 3 2894 3038 528595143 528595002 9.830000e-47 198.0
17 TraesCS2B01G203900 chr7D 89.655 145 12 3 2894 3038 606445831 606445972 9.890000e-42 182.0
18 TraesCS2B01G203900 chr4B 77.907 258 28 12 1656 1884 623400019 623400276 2.810000e-27 134.0
19 TraesCS2B01G203900 chr4B 92.683 41 2 1 1 40 590422157 590422197 1.740000e-04 58.4
20 TraesCS2B01G203900 chr4B 92.500 40 1 2 1 39 143943895 143943857 6.260000e-04 56.5
21 TraesCS2B01G203900 chr5B 87.500 112 5 2 2893 3004 468631625 468631523 2.190000e-23 121.0
22 TraesCS2B01G203900 chr6B 92.683 82 6 0 2564 2645 63224004 63224085 7.870000e-23 119.0
23 TraesCS2B01G203900 chr6B 92.683 82 6 0 2564 2645 63255008 63255089 7.870000e-23 119.0
24 TraesCS2B01G203900 chr6B 92.500 40 1 2 1 39 146571173 146571135 6.260000e-04 56.5
25 TraesCS2B01G203900 chr4A 92.683 82 6 0 2564 2645 30408947 30409028 7.870000e-23 119.0
26 TraesCS2B01G203900 chr3A 92.683 82 6 0 2564 2645 33611675 33611756 7.870000e-23 119.0
27 TraesCS2B01G203900 chr1A 92.683 82 6 0 2564 2645 395489417 395489498 7.870000e-23 119.0
28 TraesCS2B01G203900 chr3D 94.872 39 1 1 1 39 607881265 607881228 4.840000e-05 60.2
29 TraesCS2B01G203900 chr3B 92.500 40 1 2 1 40 573618753 573618716 6.260000e-04 56.5
30 TraesCS2B01G203900 chr3B 92.500 40 2 1 1 40 603832927 603832965 6.260000e-04 56.5
31 TraesCS2B01G203900 chr1D 92.500 40 1 2 1 39 364437354 364437316 6.260000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G203900 chr2B 183314462 183318939 4477 True 8270.0 8270 100.00000 1 4478 1 chr2B.!!$R1 4477
1 TraesCS2B01G203900 chr2A 136162212 136167929 5717 True 1573.5 2953 92.93425 266 4478 4 chr2A.!!$R2 4212
2 TraesCS2B01G203900 chr2D 129959635 129964116 4481 True 1321.5 2353 91.28025 30 4478 4 chr2D.!!$R1 4448

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 716 0.449388 GATTTCCGTCTGCTGCCTTG 59.551 55.0 0.00 0.0 0.0 3.61 F
1517 1600 0.682209 CTGCAGGAGTTGGAATGGGG 60.682 60.0 5.57 0.0 0.0 4.96 F
2180 2303 0.392336 TGTTTGAATTGGTGGGCTGC 59.608 50.0 0.00 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2148 2271 0.183971 TCAAACAATCCCACGGTGGT 59.816 50.0 24.7 5.41 35.17 4.16 R
3080 3206 0.106335 TTTGGTTGGGTCGCTTCGTA 59.894 50.0 0.0 0.00 0.00 3.43 R
3559 3706 0.393077 ACCTGAACGAACCAGTCCAG 59.607 55.0 0.0 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.939929 TCATCTAAATGAGTTCTAGCAAAACTG 58.060 33.333 0.32 0.00 36.98 3.16
124 125 7.288852 TGGATTTCACCCTTTTGTTTCTCAATA 59.711 33.333 0.00 0.00 35.84 1.90
125 126 7.598869 GGATTTCACCCTTTTGTTTCTCAATAC 59.401 37.037 0.00 0.00 35.84 1.89
129 130 4.522789 ACCCTTTTGTTTCTCAATACGCAT 59.477 37.500 0.00 0.00 35.84 4.73
133 134 6.183359 CCTTTTGTTTCTCAATACGCATTTCG 60.183 38.462 0.00 0.00 38.89 3.46
147 148 3.310774 CGCATTTCGAGTTTGGATCTGAT 59.689 43.478 0.00 0.00 41.67 2.90
148 149 4.201851 CGCATTTCGAGTTTGGATCTGATT 60.202 41.667 0.00 0.00 41.67 2.57
150 151 5.514204 GCATTTCGAGTTTGGATCTGATTTG 59.486 40.000 0.00 0.00 0.00 2.32
151 152 6.623549 GCATTTCGAGTTTGGATCTGATTTGA 60.624 38.462 0.00 0.00 0.00 2.69
152 153 6.486253 TTTCGAGTTTGGATCTGATTTGAG 57.514 37.500 0.00 0.00 0.00 3.02
163 168 6.045955 GGATCTGATTTGAGAGTTGTAGTCC 58.954 44.000 0.00 0.00 0.00 3.85
164 169 5.407407 TCTGATTTGAGAGTTGTAGTCCC 57.593 43.478 0.00 0.00 0.00 4.46
168 173 6.542821 TGATTTGAGAGTTGTAGTCCCATTT 58.457 36.000 0.00 0.00 0.00 2.32
172 177 6.928348 TGAGAGTTGTAGTCCCATTTCTTA 57.072 37.500 0.00 0.00 0.00 2.10
174 179 7.331026 TGAGAGTTGTAGTCCCATTTCTTATG 58.669 38.462 0.00 0.00 0.00 1.90
188 193 9.090692 CCCATTTCTTATGAACATTCACATTTC 57.909 33.333 0.00 0.00 40.49 2.17
225 259 0.759959 TTTGAAGCACCGGGAGTACA 59.240 50.000 6.32 0.00 0.00 2.90
233 267 2.737679 GCACCGGGAGTACACATAGAAC 60.738 54.545 6.32 0.00 0.00 3.01
234 268 1.747355 ACCGGGAGTACACATAGAACG 59.253 52.381 6.32 0.00 0.00 3.95
240 274 4.202441 GGAGTACACATAGAACGGGAGTA 58.798 47.826 0.00 0.00 46.69 2.59
241 275 4.036144 GGAGTACACATAGAACGGGAGTAC 59.964 50.000 0.00 0.00 46.69 2.73
253 287 1.342774 CGGGAGTACCTACTTTCCCCT 60.343 57.143 9.43 0.00 37.16 4.79
254 288 2.117051 GGGAGTACCTACTTTCCCCTG 58.883 57.143 4.58 0.00 35.41 4.45
259 293 0.845102 ACCTACTTTCCCCTGGGGTG 60.845 60.000 30.69 22.46 44.74 4.61
449 515 0.876342 CATTCCGCCTCTACCGCTTC 60.876 60.000 0.00 0.00 0.00 3.86
497 563 4.399395 TGCCTGCTTCTCCTGCCG 62.399 66.667 0.00 0.00 0.00 5.69
499 565 2.125350 CCTGCTTCTCCTGCCGAC 60.125 66.667 0.00 0.00 0.00 4.79
501 567 2.922503 TGCTTCTCCTGCCGACCA 60.923 61.111 0.00 0.00 0.00 4.02
594 669 2.689471 TGCTGCTGTGTGAGTTTTGATT 59.311 40.909 0.00 0.00 0.00 2.57
595 670 3.130869 TGCTGCTGTGTGAGTTTTGATTT 59.869 39.130 0.00 0.00 0.00 2.17
596 671 4.114794 GCTGCTGTGTGAGTTTTGATTTT 58.885 39.130 0.00 0.00 0.00 1.82
597 672 4.026310 GCTGCTGTGTGAGTTTTGATTTTG 60.026 41.667 0.00 0.00 0.00 2.44
598 673 5.321959 TGCTGTGTGAGTTTTGATTTTGA 57.678 34.783 0.00 0.00 0.00 2.69
599 674 5.904941 TGCTGTGTGAGTTTTGATTTTGAT 58.095 33.333 0.00 0.00 0.00 2.57
640 715 0.678048 GGATTTCCGTCTGCTGCCTT 60.678 55.000 0.00 0.00 0.00 4.35
641 716 0.449388 GATTTCCGTCTGCTGCCTTG 59.551 55.000 0.00 0.00 0.00 3.61
643 718 2.680974 TTTCCGTCTGCTGCCTTGCT 62.681 55.000 0.00 0.00 0.00 3.91
644 719 2.670934 CCGTCTGCTGCCTTGCTT 60.671 61.111 0.00 0.00 0.00 3.91
645 720 2.684843 CCGTCTGCTGCCTTGCTTC 61.685 63.158 0.00 0.00 0.00 3.86
646 721 1.670406 CGTCTGCTGCCTTGCTTCT 60.670 57.895 0.00 0.00 0.00 2.85
647 722 1.633852 CGTCTGCTGCCTTGCTTCTC 61.634 60.000 0.00 0.00 0.00 2.87
648 723 1.002868 TCTGCTGCCTTGCTTCTCC 60.003 57.895 0.00 0.00 0.00 3.71
649 724 2.034687 TGCTGCCTTGCTTCTCCC 59.965 61.111 0.00 0.00 0.00 4.30
721 796 6.053632 TGCAACTAGTATATGCATATGCCT 57.946 37.500 26.21 22.00 44.52 4.75
722 797 6.475504 TGCAACTAGTATATGCATATGCCTT 58.524 36.000 26.21 14.45 44.52 4.35
782 861 2.663852 CCGACGAAACGCCCAACT 60.664 61.111 0.00 0.00 0.00 3.16
783 862 2.549282 CGACGAAACGCCCAACTG 59.451 61.111 0.00 0.00 0.00 3.16
804 883 9.226345 CAACTGTAAGAGTTTCTTTTGATTCAC 57.774 33.333 0.00 0.00 42.70 3.18
812 891 5.104982 AGTTTCTTTTGATTCACAAGCCCAA 60.105 36.000 7.54 0.00 39.77 4.12
813 892 5.350504 TTCTTTTGATTCACAAGCCCAAA 57.649 34.783 7.54 0.00 39.77 3.28
814 893 4.692228 TCTTTTGATTCACAAGCCCAAAC 58.308 39.130 7.54 0.00 39.77 2.93
815 894 4.405358 TCTTTTGATTCACAAGCCCAAACT 59.595 37.500 7.54 0.00 39.77 2.66
816 895 3.731652 TTGATTCACAAGCCCAAACTG 57.268 42.857 0.00 0.00 34.20 3.16
817 896 2.665165 TGATTCACAAGCCCAAACTGT 58.335 42.857 0.00 0.00 0.00 3.55
818 897 2.361757 TGATTCACAAGCCCAAACTGTG 59.638 45.455 0.00 0.00 0.00 3.66
824 903 1.109323 AAGCCCAAACTGTGTGCTCC 61.109 55.000 0.00 0.00 0.00 4.70
830 909 3.244422 CCCAAACTGTGTGCTCCTAGTTA 60.244 47.826 0.00 0.00 33.37 2.24
837 916 2.352960 GTGTGCTCCTAGTTATTGCAGC 59.647 50.000 0.00 0.00 34.15 5.25
839 918 3.450817 TGTGCTCCTAGTTATTGCAGCTA 59.549 43.478 0.00 0.00 34.15 3.32
840 919 4.081142 TGTGCTCCTAGTTATTGCAGCTAA 60.081 41.667 0.00 0.00 34.15 3.09
841 920 4.509600 GTGCTCCTAGTTATTGCAGCTAAG 59.490 45.833 0.00 0.00 34.15 2.18
843 922 5.104941 TGCTCCTAGTTATTGCAGCTAAGAA 60.105 40.000 0.00 0.00 0.00 2.52
845 924 6.484977 GCTCCTAGTTATTGCAGCTAAGAATT 59.515 38.462 0.00 0.00 0.00 2.17
846 925 7.519649 GCTCCTAGTTATTGCAGCTAAGAATTG 60.520 40.741 0.00 0.00 0.00 2.32
848 927 6.261826 CCTAGTTATTGCAGCTAAGAATTGCT 59.738 38.462 0.00 0.00 40.54 3.91
850 929 7.020914 AGTTATTGCAGCTAAGAATTGCTAC 57.979 36.000 0.00 0.00 37.81 3.58
851 930 6.825721 AGTTATTGCAGCTAAGAATTGCTACT 59.174 34.615 0.00 0.00 37.81 2.57
852 931 7.987458 AGTTATTGCAGCTAAGAATTGCTACTA 59.013 33.333 0.00 0.00 37.81 1.82
918 997 4.994471 TGCTCTGCGCCCACTGTG 62.994 66.667 4.18 0.00 38.05 3.66
954 1037 5.421693 TCCTTATTTGGTGATGATTTGTGGG 59.578 40.000 0.00 0.00 0.00 4.61
955 1038 3.615224 ATTTGGTGATGATTTGTGGGC 57.385 42.857 0.00 0.00 0.00 5.36
979 1062 7.009540 GGCAGATTTTTCCTGTTTGATAAATCG 59.990 37.037 9.63 7.35 42.51 3.34
1098 1181 1.674221 CCGCTAGCTTTGCAAGAGTCT 60.674 52.381 13.93 5.35 0.00 3.24
1107 1190 1.181741 TGCAAGAGTCTCTGACCGCT 61.182 55.000 2.28 0.00 32.18 5.52
1161 1244 3.007323 GTTCCTAGTGGCCGGGGT 61.007 66.667 2.18 0.00 0.00 4.95
1162 1245 1.686800 GTTCCTAGTGGCCGGGGTA 60.687 63.158 2.18 0.00 0.00 3.69
1163 1246 1.052694 GTTCCTAGTGGCCGGGGTAT 61.053 60.000 2.18 0.00 0.00 2.73
1164 1247 1.052124 TTCCTAGTGGCCGGGGTATG 61.052 60.000 2.18 0.00 0.00 2.39
1165 1248 2.426023 CTAGTGGCCGGGGTATGC 59.574 66.667 2.18 0.00 0.00 3.14
1166 1249 2.041301 TAGTGGCCGGGGTATGCT 60.041 61.111 2.18 0.00 0.00 3.79
1167 1250 2.383245 CTAGTGGCCGGGGTATGCTG 62.383 65.000 2.18 0.00 0.00 4.41
1260 1343 3.260740 TGTTTCGGTGTTTGTAACGACT 58.739 40.909 0.00 0.00 34.82 4.18
1379 1462 1.145571 TGCTTAACCCTGAACCTGGT 58.854 50.000 0.00 0.00 36.06 4.00
1418 1501 3.059097 AGGGAGGTATCTTGGCATCATT 58.941 45.455 0.00 0.00 0.00 2.57
1463 1546 7.618019 TTGGGTACTAGATAATGCTGATCTT 57.382 36.000 0.00 0.00 35.30 2.40
1466 1549 6.459066 GGTACTAGATAATGCTGATCTTGCA 58.541 40.000 14.38 14.38 44.95 4.08
1517 1600 0.682209 CTGCAGGAGTTGGAATGGGG 60.682 60.000 5.57 0.00 0.00 4.96
1535 1618 2.519302 GCTGTTGGTGCAGTGGGT 60.519 61.111 0.00 0.00 38.65 4.51
1640 1723 0.746063 CTGCTGAAAAGGGTGTTGCA 59.254 50.000 0.00 0.00 0.00 4.08
1730 1813 6.106673 ACCTTTCAAATCGACTACAGTATGG 58.893 40.000 0.00 0.00 43.62 2.74
1743 1826 5.994054 ACTACAGTATGGCAATTGCTCTATG 59.006 40.000 28.42 21.20 43.62 2.23
1801 1910 1.754803 AGCATTGAATCCATGCACCAG 59.245 47.619 19.38 0.00 43.25 4.00
1803 1912 1.411246 CATTGAATCCATGCACCAGGG 59.589 52.381 0.00 0.00 36.56 4.45
1848 1957 9.980780 TGTTTTCTTATTTTGCTAAAACAAAGC 57.019 25.926 8.70 0.00 43.32 3.51
1877 1986 5.211174 ACACTTGAGTTAGAACCCAGTAC 57.789 43.478 0.00 0.00 0.00 2.73
1907 2016 2.462301 TGGGACAGGCATTCTGACA 58.538 52.632 0.00 0.00 46.18 3.58
1942 2051 6.183360 CGAACCTTAGTCCGGTTTCTAATTTC 60.183 42.308 0.00 12.37 44.41 2.17
1946 2055 6.403309 CCTTAGTCCGGTTTCTAATTTCAAGC 60.403 42.308 0.00 0.00 0.00 4.01
1960 2069 1.609208 TCAAGCCTGGTTGAGAAAGC 58.391 50.000 7.63 0.00 32.54 3.51
1965 2074 1.683385 GCCTGGTTGAGAAAGCACTTT 59.317 47.619 0.00 0.00 35.14 2.66
2043 2161 3.459598 TGCTATGGCCCTGAAAGTAATCT 59.540 43.478 0.00 0.00 37.74 2.40
2068 2188 5.412904 GGTTAGGATTCTTTGTGGTTGAGAG 59.587 44.000 0.00 0.00 0.00 3.20
2073 2193 5.473504 GGATTCTTTGTGGTTGAGAGCTAAA 59.526 40.000 0.00 0.00 0.00 1.85
2169 2292 1.892474 CCACCGTGGGATTGTTTGAAT 59.108 47.619 9.99 0.00 32.67 2.57
2180 2303 0.392336 TGTTTGAATTGGTGGGCTGC 59.608 50.000 0.00 0.00 0.00 5.25
2203 2326 3.302156 CGCCATTTTCACGGTTGTTTTTC 60.302 43.478 0.00 0.00 0.00 2.29
2217 2340 7.486870 ACGGTTGTTTTTCTGTTAATTGTCTTC 59.513 33.333 0.00 0.00 0.00 2.87
2279 2403 7.607607 TGACATAATTCATACAGTCTTGCTTGT 59.392 33.333 0.00 0.00 0.00 3.16
2303 2427 3.694043 TGTGGTATTTCAGCTGCACTA 57.306 42.857 9.47 0.00 0.00 2.74
2304 2428 4.014569 TGTGGTATTTCAGCTGCACTAA 57.985 40.909 9.47 0.77 0.00 2.24
2305 2429 4.393834 TGTGGTATTTCAGCTGCACTAAA 58.606 39.130 9.47 4.68 0.00 1.85
2306 2430 4.824537 TGTGGTATTTCAGCTGCACTAAAA 59.175 37.500 9.47 4.27 0.00 1.52
2307 2431 5.476599 TGTGGTATTTCAGCTGCACTAAAAT 59.523 36.000 9.47 11.79 0.00 1.82
2308 2432 6.015519 TGTGGTATTTCAGCTGCACTAAAATT 60.016 34.615 9.47 0.00 0.00 1.82
2309 2433 6.868339 GTGGTATTTCAGCTGCACTAAAATTT 59.132 34.615 9.47 0.00 0.00 1.82
2310 2434 6.867816 TGGTATTTCAGCTGCACTAAAATTTG 59.132 34.615 9.47 0.00 0.00 2.32
2311 2435 6.868339 GGTATTTCAGCTGCACTAAAATTTGT 59.132 34.615 9.47 0.00 0.00 2.83
2312 2436 7.384932 GGTATTTCAGCTGCACTAAAATTTGTT 59.615 33.333 9.47 0.00 0.00 2.83
2313 2437 7.790823 ATTTCAGCTGCACTAAAATTTGTTT 57.209 28.000 9.47 0.00 0.00 2.83
2314 2438 7.608308 TTTCAGCTGCACTAAAATTTGTTTT 57.392 28.000 9.47 0.00 0.00 2.43
2315 2439 7.608308 TTCAGCTGCACTAAAATTTGTTTTT 57.392 28.000 9.47 0.00 40.59 1.94
2391 2515 3.119637 CCGACCCTTTAATTTCGCATTGT 60.120 43.478 0.00 0.00 0.00 2.71
2476 2600 3.000727 GTCAATTGTTGAGTCCTACCCG 58.999 50.000 5.13 0.00 41.01 5.28
2569 2693 3.562176 GGTTGAGGAATGTCCCTGTGATT 60.562 47.826 0.00 0.00 37.19 2.57
2674 2798 3.734735 GGTTCGACTATATTTCGGCACTC 59.265 47.826 6.59 0.00 37.09 3.51
2687 2811 0.687354 GGCACTCCCTCTTTCAGACA 59.313 55.000 0.00 0.00 0.00 3.41
2733 2857 7.939039 TCTTGATGAGGTTATTTGTCTCACTTT 59.061 33.333 0.00 0.00 39.89 2.66
2743 2867 1.270518 TGTCTCACTTTGCTGCCTCTC 60.271 52.381 0.00 0.00 0.00 3.20
2773 2899 5.470047 ACTCTTGTCTTGGTAGTGTAAGG 57.530 43.478 0.00 0.00 0.00 2.69
2775 2901 5.010820 ACTCTTGTCTTGGTAGTGTAAGGTC 59.989 44.000 0.00 0.00 0.00 3.85
2977 3103 2.959507 AGGATAACAAAATTGGCGGC 57.040 45.000 0.00 0.00 0.00 6.53
2983 3109 0.891904 ACAAAATTGGCGGCGTACCT 60.892 50.000 9.37 0.00 0.00 3.08
2999 3125 3.623203 CGTACCTGTAGTAGAAGGTCCCA 60.623 52.174 7.59 0.00 43.52 4.37
3000 3126 3.555117 ACCTGTAGTAGAAGGTCCCAA 57.445 47.619 0.00 0.00 43.52 4.12
3080 3206 7.693969 CCTGACTTATTTTCTGATTTCAGGT 57.306 36.000 7.68 0.00 42.63 4.00
3097 3223 1.005867 GTACGAAGCGACCCAACCA 60.006 57.895 0.00 0.00 0.00 3.67
3112 3238 5.349690 ACCCAACCAAATGATTTATTCCCT 58.650 37.500 0.00 0.00 0.00 4.20
3113 3239 5.425217 ACCCAACCAAATGATTTATTCCCTC 59.575 40.000 0.00 0.00 0.00 4.30
3117 3244 6.780457 ACCAAATGATTTATTCCCTCTGTG 57.220 37.500 0.00 0.00 0.00 3.66
3132 3267 5.043248 CCCTCTGTGTTTTTGTGAAATGTC 58.957 41.667 0.00 0.00 0.00 3.06
3154 3301 8.893219 TGTCTCTAATGATATGTTTGATCCAC 57.107 34.615 0.00 0.00 0.00 4.02
3155 3302 8.485392 TGTCTCTAATGATATGTTTGATCCACA 58.515 33.333 0.00 0.00 0.00 4.17
3162 3309 2.291209 TGTTTGATCCACACAGGCAT 57.709 45.000 0.00 0.00 37.29 4.40
3342 3489 2.489073 GGATGGTGACTTTGAGGTGGTT 60.489 50.000 0.00 0.00 0.00 3.67
3447 3594 0.543174 AGAAGCTCGAGGACAAGGGT 60.543 55.000 15.58 0.00 0.00 4.34
3485 3632 1.537397 AGAACAGCTGAGCCCTCCA 60.537 57.895 23.35 0.00 0.00 3.86
3559 3706 3.680458 GGTTAGTGAGCAAGTCTTGTAGC 59.320 47.826 14.03 0.00 0.00 3.58
3596 3743 3.124636 CAGGTTGCGGTGTTTATACAGTC 59.875 47.826 0.00 0.00 34.24 3.51
3638 3785 3.891366 AGGCATTTCAGTGCTTTGTTAGT 59.109 39.130 0.00 0.00 44.45 2.24
3650 3797 4.638421 TGCTTTGTTAGTGTGTGCTTTAGT 59.362 37.500 0.00 0.00 0.00 2.24
3665 3812 4.037690 GCTTTAGTTTGTCAACTGCTGTG 58.962 43.478 0.00 0.00 43.54 3.66
3734 3881 0.654683 GCAGTGGCGATTCTGTGATC 59.345 55.000 0.00 0.00 34.57 2.92
3742 3889 5.000591 TGGCGATTCTGTGATCTGTAAAAA 58.999 37.500 0.00 0.00 0.00 1.94
3747 3894 6.516355 CGATTCTGTGATCTGTAAAAACGTTG 59.484 38.462 0.00 0.00 0.00 4.10
3762 3909 2.656192 CGTTGACGTACCAAAGGTTG 57.344 50.000 0.00 0.00 37.09 3.77
3788 3940 5.489792 AATCTGTCATGTGTACCTCTGTT 57.510 39.130 0.00 0.00 0.00 3.16
3856 4010 2.564721 GCAGGTGTGGGCAGGTTTC 61.565 63.158 0.00 0.00 0.00 2.78
3894 4049 7.202526 TGAGCTAGCAATATAATGTTTTTGCC 58.797 34.615 18.83 0.00 44.21 4.52
3936 4091 9.278978 TCAATGTTATTTGTTGCTCACTTAGTA 57.721 29.630 0.00 0.00 0.00 1.82
3943 4098 5.039480 TGTTGCTCACTTAGTACGACTAC 57.961 43.478 0.00 0.00 28.93 2.73
3946 4101 4.321718 TGCTCACTTAGTACGACTACAGT 58.678 43.478 0.00 0.00 28.93 3.55
3951 4106 7.571983 GCTCACTTAGTACGACTACAGTACAAA 60.572 40.741 8.86 0.00 44.92 2.83
3986 4141 5.933617 TGAGGGACAAATAATGGATCAGAG 58.066 41.667 0.00 0.00 0.00 3.35
4122 4566 2.974489 CTTTGCCCACTGCGCTGAG 61.974 63.158 21.92 13.11 45.60 3.35
4319 4763 6.264292 GTCCATTCTCTAAGATCTGCTGAGTA 59.736 42.308 15.16 9.38 0.00 2.59
4369 4818 9.733219 GAAATAGTAGTAGTACTCACAACATCC 57.267 37.037 13.60 0.00 40.23 3.51
4370 4819 8.818622 AATAGTAGTAGTACTCACAACATCCA 57.181 34.615 13.60 0.00 40.23 3.41
4390 4839 3.430862 GCCCGAGCATGACGCAAA 61.431 61.111 0.00 0.00 46.13 3.68
4402 4851 0.240945 GACGCAAATGGTCACCAAGG 59.759 55.000 0.00 0.00 36.95 3.61
4451 4900 4.675029 CGGAACCAGGACGGCGTT 62.675 66.667 16.19 0.00 39.03 4.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.939929 CAGTTTTGCTAGAACTCATTTAGATGA 58.060 33.333 0.00 0.00 39.92 2.92
3 4 8.939929 TCAGTTTTGCTAGAACTCATTTAGATG 58.060 33.333 0.00 0.00 35.26 2.90
4 5 9.507329 TTCAGTTTTGCTAGAACTCATTTAGAT 57.493 29.630 0.00 0.00 35.26 1.98
5 6 8.902540 TTCAGTTTTGCTAGAACTCATTTAGA 57.097 30.769 0.00 0.00 35.26 2.10
124 125 2.416547 CAGATCCAAACTCGAAATGCGT 59.583 45.455 0.00 0.00 41.80 5.24
125 126 2.672874 TCAGATCCAAACTCGAAATGCG 59.327 45.455 0.00 0.00 42.69 4.73
129 130 6.230472 TCTCAAATCAGATCCAAACTCGAAA 58.770 36.000 0.00 0.00 0.00 3.46
133 134 6.429385 ACAACTCTCAAATCAGATCCAAACTC 59.571 38.462 0.00 0.00 0.00 3.01
147 148 6.187727 AGAAATGGGACTACAACTCTCAAA 57.812 37.500 0.00 0.00 0.00 2.69
148 149 5.825593 AGAAATGGGACTACAACTCTCAA 57.174 39.130 0.00 0.00 0.00 3.02
150 151 7.556844 TCATAAGAAATGGGACTACAACTCTC 58.443 38.462 0.00 0.00 0.00 3.20
151 152 7.496346 TCATAAGAAATGGGACTACAACTCT 57.504 36.000 0.00 0.00 0.00 3.24
152 153 7.606456 TGTTCATAAGAAATGGGACTACAACTC 59.394 37.037 0.00 0.00 35.08 3.01
163 168 9.865321 AGAAATGTGAATGTTCATAAGAAATGG 57.135 29.630 0.00 0.00 39.73 3.16
198 203 3.133003 TCCCGGTGCTTCAAATTCAAAAA 59.867 39.130 0.00 0.00 0.00 1.94
210 240 1.480954 CTATGTGTACTCCCGGTGCTT 59.519 52.381 0.00 0.00 0.00 3.91
225 259 4.516652 AGTAGGTACTCCCGTTCTATGT 57.483 45.455 0.00 0.00 41.75 2.29
233 267 1.117994 GGGGAAAGTAGGTACTCCCG 58.882 60.000 8.98 0.00 39.86 5.14
234 268 2.117051 CAGGGGAAAGTAGGTACTCCC 58.883 57.143 7.01 7.01 41.75 4.30
497 563 2.432628 CGACTTGCGGGAGTGGTC 60.433 66.667 0.00 0.00 36.03 4.02
594 669 1.610363 TTGCAACCTACCGCATCAAA 58.390 45.000 0.00 0.00 38.10 2.69
595 670 1.610363 TTTGCAACCTACCGCATCAA 58.390 45.000 0.00 0.00 38.10 2.57
596 671 1.832883 ATTTGCAACCTACCGCATCA 58.167 45.000 0.00 0.00 38.10 3.07
597 672 2.939460 AATTTGCAACCTACCGCATC 57.061 45.000 0.00 0.00 38.10 3.91
598 673 3.761752 ACTAAATTTGCAACCTACCGCAT 59.238 39.130 0.00 0.00 38.10 4.73
599 674 3.057876 CACTAAATTTGCAACCTACCGCA 60.058 43.478 0.00 0.00 36.05 5.69
640 715 3.068691 CGGTCTCGGGGAGAAGCA 61.069 66.667 0.00 0.00 40.59 3.91
641 716 2.754658 TCGGTCTCGGGGAGAAGC 60.755 66.667 0.00 0.00 40.59 3.86
643 718 1.077644 CTCTCGGTCTCGGGGAGAA 60.078 63.158 0.00 0.00 40.59 2.87
644 719 2.590645 CTCTCGGTCTCGGGGAGA 59.409 66.667 0.00 0.00 38.14 3.71
645 720 2.517402 CCTCTCGGTCTCGGGGAG 60.517 72.222 0.00 0.00 37.49 4.30
646 721 4.816984 GCCTCTCGGTCTCGGGGA 62.817 72.222 0.00 0.00 37.49 4.81
647 722 4.824515 AGCCTCTCGGTCTCGGGG 62.825 72.222 0.00 0.00 37.49 5.73
648 723 3.213402 GAGCCTCTCGGTCTCGGG 61.213 72.222 0.00 0.00 38.44 5.14
649 724 2.124487 AGAGCCTCTCGGTCTCGG 60.124 66.667 0.00 0.00 46.54 4.63
716 791 3.659183 AACAGCTCATAAGGAAGGCAT 57.341 42.857 0.00 0.00 0.00 4.40
717 792 3.084039 CAAACAGCTCATAAGGAAGGCA 58.916 45.455 0.00 0.00 0.00 4.75
718 793 3.084786 ACAAACAGCTCATAAGGAAGGC 58.915 45.455 0.00 0.00 0.00 4.35
719 794 4.520492 ACAACAAACAGCTCATAAGGAAGG 59.480 41.667 0.00 0.00 0.00 3.46
720 795 5.695851 ACAACAAACAGCTCATAAGGAAG 57.304 39.130 0.00 0.00 0.00 3.46
721 796 7.592938 CATTACAACAAACAGCTCATAAGGAA 58.407 34.615 0.00 0.00 0.00 3.36
722 797 6.349280 GCATTACAACAAACAGCTCATAAGGA 60.349 38.462 0.00 0.00 0.00 3.36
782 861 7.915397 GCTTGTGAATCAAAAGAAACTCTTACA 59.085 33.333 16.85 0.00 35.27 2.41
783 862 7.379797 GGCTTGTGAATCAAAAGAAACTCTTAC 59.620 37.037 16.85 0.00 35.27 2.34
812 891 4.003648 GCAATAACTAGGAGCACACAGTT 58.996 43.478 0.00 5.28 35.50 3.16
813 892 3.007940 TGCAATAACTAGGAGCACACAGT 59.992 43.478 0.00 0.00 0.00 3.55
814 893 3.599343 TGCAATAACTAGGAGCACACAG 58.401 45.455 0.00 0.00 0.00 3.66
815 894 3.599343 CTGCAATAACTAGGAGCACACA 58.401 45.455 0.00 0.00 0.00 3.72
816 895 2.352960 GCTGCAATAACTAGGAGCACAC 59.647 50.000 0.00 0.00 46.75 3.82
817 896 2.632377 GCTGCAATAACTAGGAGCACA 58.368 47.619 0.00 0.00 46.75 4.57
824 903 7.256756 AGCAATTCTTAGCTGCAATAACTAG 57.743 36.000 1.02 0.00 40.13 2.57
830 909 7.814264 ATTAGTAGCAATTCTTAGCTGCAAT 57.186 32.000 1.02 0.00 44.47 3.56
882 961 6.935741 GAGCATCTAGAAGTAGTTCTCTGA 57.064 41.667 16.16 15.12 42.40 3.27
954 1037 7.542130 ACGATTTATCAAACAGGAAAAATCTGC 59.458 33.333 0.00 0.00 35.78 4.26
955 1038 8.970691 ACGATTTATCAAACAGGAAAAATCTG 57.029 30.769 0.00 0.00 38.16 2.90
979 1062 6.035327 GCCATTTCTACAGCAAATTGATGAAC 59.965 38.462 18.63 0.00 35.45 3.18
1098 1181 2.669569 GCAAAGGCAGCGGTCAGA 60.670 61.111 0.00 0.00 40.72 3.27
1107 1190 0.034767 CTGGGATCTGAGCAAAGGCA 60.035 55.000 0.00 0.00 44.61 4.75
1190 1273 7.714377 AGGCAGAAAGAATATACAGATTGAGTG 59.286 37.037 0.00 0.00 0.00 3.51
1228 1311 6.428465 ACAAACACCGAAACATATATGTGACA 59.572 34.615 18.94 0.00 41.61 3.58
1243 1326 2.867287 TCAGTCGTTACAAACACCGA 57.133 45.000 0.00 0.00 0.00 4.69
1244 1327 2.798283 ACATCAGTCGTTACAAACACCG 59.202 45.455 0.00 0.00 0.00 4.94
1260 1343 5.768164 TCACTACAGTACAGACAGAACATCA 59.232 40.000 0.00 0.00 0.00 3.07
1379 1462 3.565961 TTGCCAATCAGCCGGAGCA 62.566 57.895 5.05 0.00 43.56 4.26
1418 1501 3.037851 AGGATGATGGCTGAGTACTCA 57.962 47.619 23.80 23.80 38.06 3.41
1517 1600 3.297620 CCCACTGCACCAACAGCC 61.298 66.667 0.00 0.00 41.60 4.85
1640 1723 2.307098 AGCAGCAGTTACTCCATCCTTT 59.693 45.455 0.00 0.00 0.00 3.11
1730 1813 4.367386 AGCTTCAACATAGAGCAATTGC 57.633 40.909 23.05 23.05 42.49 3.56
1758 1841 8.386606 TGCTTGATCAACATAACAAAACAAAAC 58.613 29.630 3.38 0.00 0.00 2.43
1761 1844 8.549548 CAATGCTTGATCAACATAACAAAACAA 58.450 29.630 17.95 0.00 0.00 2.83
1762 1845 7.924947 TCAATGCTTGATCAACATAACAAAACA 59.075 29.630 17.95 0.00 34.08 2.83
1763 1846 8.296799 TCAATGCTTGATCAACATAACAAAAC 57.703 30.769 17.95 0.00 34.08 2.43
1801 1910 2.298411 TAAGTCGATTACGTTGCCCC 57.702 50.000 0.00 0.00 40.69 5.80
1803 1912 4.852609 ACATTAAGTCGATTACGTTGCC 57.147 40.909 0.00 0.00 40.69 4.52
1831 1940 5.604565 AGCTGAGCTTTGTTTTAGCAAAAT 58.395 33.333 0.00 0.00 41.11 1.82
1848 1957 5.164954 GGTTCTAACTCAAGTGTAGCTGAG 58.835 45.833 0.00 0.00 34.81 3.35
1877 1986 2.440409 CCTGTCCCATCTGGTTTTGAG 58.560 52.381 0.00 0.00 34.77 3.02
1942 2051 1.000938 GTGCTTTCTCAACCAGGCTTG 60.001 52.381 0.00 0.00 0.00 4.01
1946 2055 4.391405 AAAAAGTGCTTTCTCAACCAGG 57.609 40.909 0.00 0.00 31.45 4.45
1971 2080 4.380867 CCCCAATCACAAATTGACACTAGC 60.381 45.833 0.00 0.00 36.92 3.42
1981 2099 0.325577 GGAGGCCCCCAATCACAAAT 60.326 55.000 0.00 0.00 0.00 2.32
2043 2161 5.055265 TCAACCACAAAGAATCCTAACCA 57.945 39.130 0.00 0.00 0.00 3.67
2148 2271 0.183971 TCAAACAATCCCACGGTGGT 59.816 50.000 24.70 5.41 35.17 4.16
2149 2272 1.323412 TTCAAACAATCCCACGGTGG 58.677 50.000 20.41 20.41 37.25 4.61
2185 2308 8.710835 ATTAACAGAAAAACAACCGTGAAAAT 57.289 26.923 0.00 0.00 0.00 1.82
2203 2326 7.630924 ACAAAACGAGAGAAGACAATTAACAG 58.369 34.615 0.00 0.00 0.00 3.16
2242 2365 4.735369 TGAATTATGTCAGGTTGGTTGGT 58.265 39.130 0.00 0.00 0.00 3.67
2246 2369 6.721318 ACTGTATGAATTATGTCAGGTTGGT 58.279 36.000 0.00 0.00 0.00 3.67
2279 2403 3.253188 GTGCAGCTGAAATACCACAAAGA 59.747 43.478 20.43 0.00 0.00 2.52
2315 2439 9.796120 CAAATTTTAGTGTAGGTTCAGTCAAAA 57.204 29.630 0.00 0.00 0.00 2.44
2316 2440 8.962679 ACAAATTTTAGTGTAGGTTCAGTCAAA 58.037 29.630 0.00 0.00 0.00 2.69
2317 2441 8.514330 ACAAATTTTAGTGTAGGTTCAGTCAA 57.486 30.769 0.00 0.00 0.00 3.18
2318 2442 8.402472 CAACAAATTTTAGTGTAGGTTCAGTCA 58.598 33.333 0.00 0.00 0.00 3.41
2319 2443 7.378728 GCAACAAATTTTAGTGTAGGTTCAGTC 59.621 37.037 0.00 0.00 0.00 3.51
2320 2444 7.068226 AGCAACAAATTTTAGTGTAGGTTCAGT 59.932 33.333 0.00 0.00 0.00 3.41
2321 2445 7.425606 AGCAACAAATTTTAGTGTAGGTTCAG 58.574 34.615 0.00 0.00 0.00 3.02
2322 2446 7.341445 AGCAACAAATTTTAGTGTAGGTTCA 57.659 32.000 0.00 0.00 0.00 3.18
2323 2447 9.394477 CTTAGCAACAAATTTTAGTGTAGGTTC 57.606 33.333 0.00 0.00 0.00 3.62
2324 2448 8.357402 CCTTAGCAACAAATTTTAGTGTAGGTT 58.643 33.333 0.00 0.00 0.00 3.50
2325 2449 7.504574 ACCTTAGCAACAAATTTTAGTGTAGGT 59.495 33.333 0.00 0.00 30.36 3.08
2326 2450 7.882179 ACCTTAGCAACAAATTTTAGTGTAGG 58.118 34.615 0.00 0.00 0.00 3.18
2327 2451 9.744468 AAACCTTAGCAACAAATTTTAGTGTAG 57.256 29.630 0.00 0.00 0.00 2.74
2391 2515 9.083422 CAGGGTCTACAAGAGAAGATATTCATA 57.917 37.037 2.42 0.00 35.37 2.15
2476 2600 0.954452 CAGGCACAAAAGGAGACCAC 59.046 55.000 0.00 0.00 0.00 4.16
2569 2693 7.857456 TCTTAATAACTGGCTTATCAGGTTCA 58.143 34.615 0.00 0.00 38.98 3.18
2733 2857 4.090090 AGAGTTTAACTAGAGAGGCAGCA 58.910 43.478 0.00 0.00 0.00 4.41
2743 2867 8.142551 ACACTACCAAGACAAGAGTTTAACTAG 58.857 37.037 0.00 0.00 0.00 2.57
2773 2899 3.057174 CGGGATAGCACAGAGGATTAGAC 60.057 52.174 0.00 0.00 0.00 2.59
2775 2901 3.157881 TCGGGATAGCACAGAGGATTAG 58.842 50.000 0.00 0.00 0.00 1.73
2977 3103 2.948315 GGGACCTTCTACTACAGGTACG 59.052 54.545 0.00 0.00 44.32 3.67
2983 3109 4.495565 TCCTTTTGGGACCTTCTACTACA 58.504 43.478 0.00 0.00 39.58 2.74
2999 3125 3.118149 ACACTACCGACCAGTTTCCTTTT 60.118 43.478 0.00 0.00 0.00 2.27
3000 3126 2.436911 ACACTACCGACCAGTTTCCTTT 59.563 45.455 0.00 0.00 0.00 3.11
3010 3136 2.481449 CCTTATGCTCACACTACCGACC 60.481 54.545 0.00 0.00 0.00 4.79
3013 3139 1.754803 TCCCTTATGCTCACACTACCG 59.245 52.381 0.00 0.00 0.00 4.02
3080 3206 0.106335 TTTGGTTGGGTCGCTTCGTA 59.894 50.000 0.00 0.00 0.00 3.43
3097 3223 9.492973 CAAAAACACAGAGGGAATAAATCATTT 57.507 29.630 0.00 0.00 0.00 2.32
3112 3238 6.757897 AGAGACATTTCACAAAAACACAGA 57.242 33.333 0.00 0.00 0.00 3.41
3113 3239 8.961092 CATTAGAGACATTTCACAAAAACACAG 58.039 33.333 0.00 0.00 0.00 3.66
3132 3267 8.667076 TGTGTGGATCAAACATATCATTAGAG 57.333 34.615 4.02 0.00 0.00 2.43
3143 3290 2.161855 GATGCCTGTGTGGATCAAACA 58.838 47.619 0.00 0.00 38.35 2.83
3144 3291 2.440409 AGATGCCTGTGTGGATCAAAC 58.560 47.619 0.00 0.00 38.35 2.93
3154 3301 2.002586 CAAGACGGTAAGATGCCTGTG 58.997 52.381 0.00 0.00 0.00 3.66
3155 3302 1.066143 CCAAGACGGTAAGATGCCTGT 60.066 52.381 0.00 0.00 0.00 4.00
3162 3309 3.830178 TCATGAACTCCAAGACGGTAAGA 59.170 43.478 0.00 0.00 35.57 2.10
3447 3594 0.461870 CAACGGAGGAATCGGCATCA 60.462 55.000 0.00 0.00 0.00 3.07
3485 3632 2.417107 CGAGAGCTCAGCTGTTCTCAAT 60.417 50.000 28.14 16.60 39.88 2.57
3559 3706 0.393077 ACCTGAACGAACCAGTCCAG 59.607 55.000 0.00 0.00 0.00 3.86
3596 3743 1.979855 TGTCACCCCACACAGAATTG 58.020 50.000 0.00 0.00 0.00 2.32
3638 3785 4.674101 GCAGTTGACAAACTAAAGCACACA 60.674 41.667 0.00 0.00 45.07 3.72
3650 3797 1.672363 CTCAGCACAGCAGTTGACAAA 59.328 47.619 0.00 0.00 0.00 2.83
3665 3812 2.095252 GCGAACTCGGGAACTCAGC 61.095 63.158 0.69 0.00 40.23 4.26
3747 3894 2.460757 TAGGCAACCTTTGGTACGTC 57.539 50.000 0.00 0.00 33.12 4.34
3751 3898 4.042311 TGACAGATTAGGCAACCTTTGGTA 59.958 41.667 0.00 0.00 33.12 3.25
3757 3904 3.009473 ACACATGACAGATTAGGCAACCT 59.991 43.478 0.00 0.00 37.71 3.50
3759 3906 4.332819 GGTACACATGACAGATTAGGCAAC 59.667 45.833 0.00 0.00 0.00 4.17
3762 3909 4.100189 AGAGGTACACATGACAGATTAGGC 59.900 45.833 0.00 0.00 0.00 3.93
3788 3940 7.178573 AGACTATTGATTGATCGAGGAGGATA 58.821 38.462 0.00 0.00 0.00 2.59
3856 4010 4.517285 TGCTAGCTCAAGGATAAAACAGG 58.483 43.478 17.23 0.00 0.00 4.00
3894 4049 4.848357 ACATTGATCCAAGGGAGTAAGTG 58.152 43.478 0.00 0.00 34.05 3.16
3946 4101 9.575868 TTGTCCCTCAATTAGTACAATTTTGTA 57.424 29.630 0.00 0.00 42.35 2.41
3967 4122 9.482627 CTTAGTACTCTGATCCATTATTTGTCC 57.517 37.037 0.00 0.00 0.00 4.02
4082 4237 2.481276 GGCACTGTTGGTGGAACTTTTC 60.481 50.000 0.00 0.00 45.44 2.29
4134 4578 1.576356 GTGATCTCCGTCCTTGATGC 58.424 55.000 0.00 0.00 0.00 3.91
4336 4780 7.171337 GTGAGTACTACTACTATTTCCTCGAGG 59.829 44.444 26.32 26.32 32.96 4.63
4340 4784 8.954350 TGTTGTGAGTACTACTACTATTTCCTC 58.046 37.037 0.00 0.00 32.96 3.71
4369 4818 2.584418 CGTCATGCTCGGGCTCTG 60.584 66.667 9.62 6.44 39.59 3.35
4370 4819 4.521062 GCGTCATGCTCGGGCTCT 62.521 66.667 9.62 0.00 41.73 4.09
4390 4839 1.125093 TCGGACACCTTGGTGACCAT 61.125 55.000 29.86 10.37 38.70 3.55
4451 4900 1.103803 GCTCACCGTCTACCTCATCA 58.896 55.000 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.