Multiple sequence alignment - TraesCS2B01G203800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G203800 chr2B 100.000 2789 0 0 1 2789 183312966 183315754 0.000000e+00 5151.0
1 TraesCS2B01G203800 chr2B 90.989 455 38 2 154 607 776065920 776065468 6.600000e-171 610.0
2 TraesCS2B01G203800 chr2B 92.365 406 30 1 203 607 183312352 183311947 6.700000e-161 577.0
3 TraesCS2B01G203800 chr2B 96.644 149 3 1 1 147 799052404 799052256 2.150000e-61 246.0
4 TraesCS2B01G203800 chr2B 89.130 92 10 0 729 820 636544305 636544214 6.310000e-22 115.0
5 TraesCS2B01G203800 chr2B 76.847 203 41 3 1104 1300 182936457 182936659 2.940000e-20 110.0
6 TraesCS2B01G203800 chr2A 90.877 1973 95 19 832 2787 136163110 136165014 0.000000e+00 2567.0
7 TraesCS2B01G203800 chr2A 85.912 795 78 8 886 1648 136160878 136161670 0.000000e+00 817.0
8 TraesCS2B01G203800 chr2A 89.693 456 43 3 154 607 558946032 558945579 1.860000e-161 579.0
9 TraesCS2B01G203800 chr2A 88.187 364 26 8 2085 2440 136162212 136162566 4.300000e-113 418.0
10 TraesCS2B01G203800 chr2A 96.599 147 1 4 3 147 642979588 642979732 9.980000e-60 241.0
11 TraesCS2B01G203800 chr2D 93.548 930 51 3 961 1884 129959102 129960028 0.000000e+00 1376.0
12 TraesCS2B01G203800 chr2D 92.210 706 28 5 2087 2789 129960434 129961115 0.000000e+00 974.0
13 TraesCS2B01G203800 chr2D 85.714 301 17 8 1 277 33316876 33316578 7.550000e-76 294.0
14 TraesCS2B01G203800 chr2D 83.249 197 27 4 1113 1303 136181509 136181313 2.860000e-40 176.0
15 TraesCS2B01G203800 chr2D 82.143 140 19 3 1104 1237 129799225 129799364 6.310000e-22 115.0
16 TraesCS2B01G203800 chr2D 79.630 162 27 2 1104 1259 129789304 129789465 8.170000e-21 111.0
17 TraesCS2B01G203800 chr2D 76.961 204 39 5 1104 1300 129353127 129353329 2.940000e-20 110.0
18 TraesCS2B01G203800 chr2D 88.571 70 4 3 744 811 551211109 551211176 6.400000e-12 82.4
19 TraesCS2B01G203800 chr5A 90.330 455 42 2 154 607 618282002 618282455 1.850000e-166 595.0
20 TraesCS2B01G203800 chr5A 90.610 213 16 2 608 820 510549677 510549469 2.120000e-71 279.0
21 TraesCS2B01G203800 chr4A 90.330 455 41 2 154 607 453032848 453032396 6.650000e-166 593.0
22 TraesCS2B01G203800 chr4A 91.017 423 32 5 187 607 453033629 453034047 1.450000e-157 566.0
23 TraesCS2B01G203800 chr4A 91.080 213 15 2 608 820 454761530 454761322 4.550000e-73 285.0
24 TraesCS2B01G203800 chr4A 96.644 149 1 4 1 147 453033034 453032888 7.720000e-61 244.0
25 TraesCS2B01G203800 chr7D 89.427 454 47 1 154 607 55405105 55404653 3.120000e-159 571.0
26 TraesCS2B01G203800 chr6B 90.632 427 38 2 187 613 136340619 136340195 1.450000e-157 566.0
27 TraesCS2B01G203800 chr4B 88.503 461 49 3 148 607 386221765 386222222 3.140000e-154 555.0
28 TraesCS2B01G203800 chr4B 95.973 149 2 4 1 147 386221585 386221731 3.590000e-59 239.0
29 TraesCS2B01G203800 chr4D 91.080 213 15 2 608 820 63144511 63144303 4.550000e-73 285.0
30 TraesCS2B01G203800 chr6D 96.644 149 2 2 1 147 77675441 77675294 7.720000e-61 244.0
31 TraesCS2B01G203800 chr1D 96.644 149 2 2 1 147 475210744 475210597 7.720000e-61 244.0
32 TraesCS2B01G203800 chr1D 91.860 86 7 0 726 811 321706948 321707033 1.360000e-23 121.0
33 TraesCS2B01G203800 chr1B 96.644 149 1 4 1 147 374850610 374850464 7.720000e-61 244.0
34 TraesCS2B01G203800 chr1B 83.871 124 14 6 699 820 430708381 430708262 2.270000e-21 113.0
35 TraesCS2B01G203800 chr6A 94.231 156 5 4 1 155 210790953 210790801 4.640000e-58 235.0
36 TraesCS2B01G203800 chr5B 90.217 92 9 0 729 820 478519902 478519811 1.360000e-23 121.0
37 TraesCS2B01G203800 chr3B 89.130 92 10 0 729 820 306547296 306547387 6.310000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G203800 chr2B 183312966 183315754 2788 False 5151.000000 5151 100.000000 1 2789 1 chr2B.!!$F2 2788
1 TraesCS2B01G203800 chr2A 136160878 136165014 4136 False 1267.333333 2567 88.325333 832 2787 3 chr2A.!!$F2 1955
2 TraesCS2B01G203800 chr2D 129959102 129961115 2013 False 1175.000000 1376 92.879000 961 2789 2 chr2D.!!$F5 1828
3 TraesCS2B01G203800 chr4A 453032396 453033034 638 True 418.500000 593 93.487000 1 607 2 chr4A.!!$R2 606
4 TraesCS2B01G203800 chr4B 386221585 386222222 637 False 397.000000 555 92.238000 1 607 2 chr4B.!!$F1 606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 867 0.035439 GGATGGAACTCGGCCTGAAA 60.035 55.0 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2513 4222 0.107017 CAAGGGTGATGCCGATTCCT 60.107 55.0 0.0 0.0 38.44 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 5.437289 AGCATTTCGAGAAACACATCAAA 57.563 34.783 0.00 0.00 32.51 2.69
180 215 1.683418 ATAAAGGACGACCCGCCTCC 61.683 60.000 0.00 0.00 40.87 4.30
195 230 1.545651 GCCTCCAACCTAACACAAGCT 60.546 52.381 0.00 0.00 0.00 3.74
201 236 1.797025 ACCTAACACAAGCTTCGCTC 58.203 50.000 0.00 0.00 38.25 5.03
208 243 2.046507 AAGCTTCGCTCTGGCCTG 60.047 61.111 3.32 2.92 38.25 4.85
256 291 1.308998 CAGGTCGCAGGTTTGAAACT 58.691 50.000 8.09 0.00 0.00 2.66
266 301 3.114647 TTTGAAACTTGGCGCGCGT 62.115 52.632 32.35 15.20 0.00 6.01
269 304 4.307908 AAACTTGGCGCGCGTGAC 62.308 61.111 32.35 23.65 0.00 3.67
274 309 2.982038 CTTGGCGCGCGTGACTTTTT 62.982 55.000 32.35 0.00 0.00 1.94
305 340 8.079809 ACTTTATTTATTTGTCCAGTTCGTTGG 58.920 33.333 0.00 0.00 39.70 3.77
330 365 7.148557 GGAAATTTTCAAACAAGTCCGAACAAA 60.149 33.333 11.09 0.00 0.00 2.83
331 366 7.841915 AATTTTCAAACAAGTCCGAACAAAT 57.158 28.000 0.00 0.00 0.00 2.32
406 442 6.068010 TGTGATTATGTATAAAGCAAGGGGG 58.932 40.000 0.00 0.00 0.00 5.40
411 447 5.932619 ATGTATAAAGCAAGGGGGTTTTC 57.067 39.130 0.00 0.00 44.39 2.29
455 491 1.418908 CCTGATAGACGGGCCCCAAT 61.419 60.000 18.66 0.62 38.29 3.16
456 492 1.348064 CTGATAGACGGGCCCCAATA 58.652 55.000 18.66 6.57 0.00 1.90
467 503 2.644798 GGGCCCCAATAGTCAGATACAT 59.355 50.000 12.23 0.00 0.00 2.29
513 549 7.268235 GCGTTTTAGCCTAATTTGCAAAAATTC 59.732 33.333 17.19 4.97 34.51 2.17
515 551 8.491950 GTTTTAGCCTAATTTGCAAAAATTCGA 58.508 29.630 17.19 0.00 34.51 3.71
607 643 5.701290 GTGGTACTTCTGTGCAATTAACTCT 59.299 40.000 0.00 0.00 0.00 3.24
608 644 6.204882 GTGGTACTTCTGTGCAATTAACTCTT 59.795 38.462 0.00 0.00 0.00 2.85
610 646 6.204882 GGTACTTCTGTGCAATTAACTCTTGT 59.795 38.462 0.00 0.00 0.00 3.16
611 647 6.699575 ACTTCTGTGCAATTAACTCTTGTT 57.300 33.333 0.00 0.00 39.98 2.83
612 648 6.498304 ACTTCTGTGCAATTAACTCTTGTTG 58.502 36.000 0.00 0.00 37.59 3.33
613 649 6.095440 ACTTCTGTGCAATTAACTCTTGTTGT 59.905 34.615 0.00 0.00 37.59 3.32
614 650 6.449635 TCTGTGCAATTAACTCTTGTTGTT 57.550 33.333 0.00 0.00 37.59 2.83
615 651 6.264832 TCTGTGCAATTAACTCTTGTTGTTG 58.735 36.000 0.00 0.00 37.59 3.33
617 653 5.804473 TGTGCAATTAACTCTTGTTGTTGTG 59.196 36.000 0.00 0.00 36.44 3.33
618 654 5.231991 GTGCAATTAACTCTTGTTGTTGTGG 59.768 40.000 0.00 0.00 36.44 4.17
619 655 5.105554 TGCAATTAACTCTTGTTGTTGTGGT 60.106 36.000 0.00 0.00 36.44 4.16
620 656 6.095580 TGCAATTAACTCTTGTTGTTGTGGTA 59.904 34.615 0.00 0.00 36.44 3.25
621 657 7.145323 GCAATTAACTCTTGTTGTTGTGGTAT 58.855 34.615 0.00 0.00 36.44 2.73
622 658 8.293867 GCAATTAACTCTTGTTGTTGTGGTATA 58.706 33.333 0.00 0.00 36.44 1.47
624 660 7.733402 TTAACTCTTGTTGTTGTGGTATACC 57.267 36.000 15.50 15.50 37.59 2.73
625 661 5.562298 ACTCTTGTTGTTGTGGTATACCT 57.438 39.130 22.41 0.00 36.82 3.08
626 662 5.305585 ACTCTTGTTGTTGTGGTATACCTG 58.694 41.667 22.41 1.36 36.82 4.00
627 663 5.163237 ACTCTTGTTGTTGTGGTATACCTGT 60.163 40.000 22.41 1.29 36.82 4.00
628 664 5.060506 TCTTGTTGTTGTGGTATACCTGTG 58.939 41.667 22.41 2.34 36.82 3.66
629 665 4.691326 TGTTGTTGTGGTATACCTGTGA 57.309 40.909 22.41 0.00 36.82 3.58
630 666 5.235850 TGTTGTTGTGGTATACCTGTGAT 57.764 39.130 22.41 0.00 36.82 3.06
631 667 5.000591 TGTTGTTGTGGTATACCTGTGATG 58.999 41.667 22.41 0.00 36.82 3.07
633 669 3.263170 TGTTGTGGTATACCTGTGATGCT 59.737 43.478 22.41 0.00 36.82 3.79
636 672 3.386726 TGTGGTATACCTGTGATGCTACC 59.613 47.826 22.41 0.00 36.82 3.18
637 673 3.641906 GTGGTATACCTGTGATGCTACCT 59.358 47.826 22.41 0.00 36.82 3.08
638 674 4.101119 GTGGTATACCTGTGATGCTACCTT 59.899 45.833 22.41 0.00 36.82 3.50
639 675 4.719773 TGGTATACCTGTGATGCTACCTTT 59.280 41.667 22.41 0.00 36.82 3.11
640 676 5.057149 GGTATACCTGTGATGCTACCTTTG 58.943 45.833 15.09 0.00 0.00 2.77
641 677 5.163343 GGTATACCTGTGATGCTACCTTTGA 60.163 44.000 15.09 0.00 0.00 2.69
642 678 5.636903 ATACCTGTGATGCTACCTTTGAT 57.363 39.130 0.00 0.00 0.00 2.57
643 679 3.614092 ACCTGTGATGCTACCTTTGATG 58.386 45.455 0.00 0.00 0.00 3.07
644 680 2.357009 CCTGTGATGCTACCTTTGATGC 59.643 50.000 0.00 0.00 0.00 3.91
645 681 2.357009 CTGTGATGCTACCTTTGATGCC 59.643 50.000 0.00 0.00 0.00 4.40
646 682 1.678101 GTGATGCTACCTTTGATGCCC 59.322 52.381 0.00 0.00 0.00 5.36
648 684 2.025037 TGATGCTACCTTTGATGCCCTT 60.025 45.455 0.00 0.00 0.00 3.95
649 685 1.838112 TGCTACCTTTGATGCCCTTG 58.162 50.000 0.00 0.00 0.00 3.61
666 702 4.940463 CCCTTGGCATGTCTAATTGAATG 58.060 43.478 0.00 0.00 0.00 2.67
667 703 4.646040 CCCTTGGCATGTCTAATTGAATGA 59.354 41.667 0.00 0.00 0.00 2.57
668 704 5.221185 CCCTTGGCATGTCTAATTGAATGAG 60.221 44.000 0.00 0.00 0.00 2.90
669 705 4.906065 TGGCATGTCTAATTGAATGAGC 57.094 40.909 0.00 0.00 0.00 4.26
670 706 4.529897 TGGCATGTCTAATTGAATGAGCT 58.470 39.130 0.00 0.00 0.00 4.09
671 707 4.337274 TGGCATGTCTAATTGAATGAGCTG 59.663 41.667 0.00 0.00 0.00 4.24
672 708 4.577693 GGCATGTCTAATTGAATGAGCTGA 59.422 41.667 0.00 0.00 0.00 4.26
673 709 5.505324 GGCATGTCTAATTGAATGAGCTGAC 60.505 44.000 0.00 0.00 0.00 3.51
674 710 5.296283 GCATGTCTAATTGAATGAGCTGACT 59.704 40.000 0.00 0.00 0.00 3.41
675 711 6.716438 CATGTCTAATTGAATGAGCTGACTG 58.284 40.000 0.00 0.00 0.00 3.51
701 737 1.715785 TTTTGCCAAAGGAGGAAGGG 58.284 50.000 0.00 0.00 0.00 3.95
702 738 0.856982 TTTGCCAAAGGAGGAAGGGA 59.143 50.000 0.00 0.00 0.00 4.20
703 739 0.405585 TTGCCAAAGGAGGAAGGGAG 59.594 55.000 0.00 0.00 0.00 4.30
704 740 0.772124 TGCCAAAGGAGGAAGGGAGT 60.772 55.000 0.00 0.00 0.00 3.85
705 741 1.286248 GCCAAAGGAGGAAGGGAGTA 58.714 55.000 0.00 0.00 0.00 2.59
706 742 1.633945 GCCAAAGGAGGAAGGGAGTAA 59.366 52.381 0.00 0.00 0.00 2.24
708 744 2.913617 CCAAAGGAGGAAGGGAGTAACT 59.086 50.000 0.00 0.00 0.00 2.24
710 746 3.562108 AAGGAGGAAGGGAGTAACTGA 57.438 47.619 0.00 0.00 0.00 3.41
711 747 3.108847 AGGAGGAAGGGAGTAACTGAG 57.891 52.381 0.00 0.00 0.00 3.35
712 748 1.483004 GGAGGAAGGGAGTAACTGAGC 59.517 57.143 0.00 0.00 0.00 4.26
713 749 1.135333 GAGGAAGGGAGTAACTGAGCG 59.865 57.143 0.00 0.00 0.00 5.03
714 750 0.460459 GGAAGGGAGTAACTGAGCGC 60.460 60.000 0.00 0.00 0.00 5.92
715 751 0.246635 GAAGGGAGTAACTGAGCGCA 59.753 55.000 11.47 0.00 0.00 6.09
717 753 1.153549 GGGAGTAACTGAGCGCAGG 60.154 63.158 21.93 3.98 46.60 4.85
718 754 1.605058 GGGAGTAACTGAGCGCAGGA 61.605 60.000 21.93 6.32 46.60 3.86
719 755 0.461961 GGAGTAACTGAGCGCAGGAT 59.538 55.000 21.93 12.27 46.60 3.24
721 757 2.197577 GAGTAACTGAGCGCAGGATTC 58.802 52.381 21.93 11.16 46.60 2.52
722 758 1.550524 AGTAACTGAGCGCAGGATTCA 59.449 47.619 21.93 2.58 46.60 2.57
723 759 2.028112 AGTAACTGAGCGCAGGATTCAA 60.028 45.455 21.93 0.00 46.60 2.69
726 762 1.005340 CTGAGCGCAGGATTCAAGAC 58.995 55.000 11.47 0.00 38.51 3.01
727 763 0.321346 TGAGCGCAGGATTCAAGACA 59.679 50.000 11.47 0.00 0.00 3.41
729 765 1.806542 GAGCGCAGGATTCAAGACAAA 59.193 47.619 11.47 0.00 0.00 2.83
730 766 1.808945 AGCGCAGGATTCAAGACAAAG 59.191 47.619 11.47 0.00 0.00 2.77
731 767 1.135575 GCGCAGGATTCAAGACAAAGG 60.136 52.381 0.30 0.00 0.00 3.11
732 768 1.470098 CGCAGGATTCAAGACAAAGGG 59.530 52.381 0.00 0.00 0.00 3.95
734 770 3.359950 GCAGGATTCAAGACAAAGGGAT 58.640 45.455 0.00 0.00 0.00 3.85
736 772 4.221482 GCAGGATTCAAGACAAAGGGATTT 59.779 41.667 0.00 0.00 0.00 2.17
737 773 5.717119 CAGGATTCAAGACAAAGGGATTTG 58.283 41.667 0.00 0.00 37.89 2.32
739 775 5.244626 AGGATTCAAGACAAAGGGATTTGTG 59.755 40.000 10.83 0.00 44.37 3.33
740 776 4.935352 TTCAAGACAAAGGGATTTGTGG 57.065 40.909 10.83 1.85 44.37 4.17
741 777 3.909732 TCAAGACAAAGGGATTTGTGGT 58.090 40.909 10.83 0.00 44.37 4.16
742 778 3.636300 TCAAGACAAAGGGATTTGTGGTG 59.364 43.478 10.83 8.50 44.37 4.17
743 779 3.593442 AGACAAAGGGATTTGTGGTGA 57.407 42.857 10.83 0.00 44.37 4.02
745 781 2.558359 GACAAAGGGATTTGTGGTGAGG 59.442 50.000 10.83 0.00 44.37 3.86
747 783 1.158007 AAGGGATTTGTGGTGAGGGT 58.842 50.000 0.00 0.00 0.00 4.34
748 784 0.405585 AGGGATTTGTGGTGAGGGTG 59.594 55.000 0.00 0.00 0.00 4.61
749 785 0.112412 GGGATTTGTGGTGAGGGTGT 59.888 55.000 0.00 0.00 0.00 4.16
751 787 1.613437 GGATTTGTGGTGAGGGTGTTG 59.387 52.381 0.00 0.00 0.00 3.33
752 788 1.613437 GATTTGTGGTGAGGGTGTTGG 59.387 52.381 0.00 0.00 0.00 3.77
753 789 1.040339 TTTGTGGTGAGGGTGTTGGC 61.040 55.000 0.00 0.00 0.00 4.52
754 790 2.978010 GTGGTGAGGGTGTTGGCG 60.978 66.667 0.00 0.00 0.00 5.69
755 791 4.263572 TGGTGAGGGTGTTGGCGG 62.264 66.667 0.00 0.00 0.00 6.13
772 808 2.677228 GGGGGTGGGTGACATGAG 59.323 66.667 0.00 0.00 0.00 2.90
773 809 2.677228 GGGGTGGGTGACATGAGG 59.323 66.667 0.00 0.00 0.00 3.86
775 811 2.677228 GGTGGGTGACATGAGGGG 59.323 66.667 0.00 0.00 0.00 4.79
779 815 0.918983 TGGGTGACATGAGGGGATTC 59.081 55.000 0.00 0.00 0.00 2.52
780 816 0.918983 GGGTGACATGAGGGGATTCA 59.081 55.000 0.00 0.00 0.00 2.57
781 817 1.408822 GGGTGACATGAGGGGATTCAC 60.409 57.143 0.00 0.24 36.63 3.18
782 818 2.044123 GTGACATGAGGGGATTCACC 57.956 55.000 0.00 0.00 32.12 4.02
805 841 0.840722 TCCCTGGAGGAGTTGGTTCC 60.841 60.000 0.00 0.00 40.93 3.62
806 842 1.685820 CCTGGAGGAGTTGGTTCCC 59.314 63.158 0.00 0.00 38.02 3.97
808 844 2.185310 CTGGAGGAGTTGGTTCCCCG 62.185 65.000 0.00 0.00 38.02 5.73
809 845 2.222013 GGAGGAGTTGGTTCCCCGT 61.222 63.158 0.00 0.00 38.02 5.28
812 848 1.599797 GGAGTTGGTTCCCCGTGTG 60.600 63.158 0.00 0.00 0.00 3.82
813 849 1.599797 GAGTTGGTTCCCCGTGTGG 60.600 63.158 0.00 0.00 0.00 4.17
815 851 1.074248 GTTGGTTCCCCGTGTGGAT 59.926 57.895 0.00 0.00 37.49 3.41
816 852 1.074072 TTGGTTCCCCGTGTGGATG 59.926 57.895 0.00 0.00 37.49 3.51
818 854 2.598787 GGTTCCCCGTGTGGATGGA 61.599 63.158 0.00 0.00 37.49 3.41
820 856 0.958876 GTTCCCCGTGTGGATGGAAC 60.959 60.000 4.68 4.68 44.28 3.62
821 857 1.131303 TTCCCCGTGTGGATGGAACT 61.131 55.000 0.00 0.00 37.49 3.01
823 859 1.447838 CCCGTGTGGATGGAACTCG 60.448 63.158 0.00 0.00 37.49 4.18
824 860 1.447838 CCGTGTGGATGGAACTCGG 60.448 63.158 3.09 3.09 45.01 4.63
826 862 1.745489 GTGTGGATGGAACTCGGCC 60.745 63.158 0.00 0.00 0.00 6.13
827 863 1.918293 TGTGGATGGAACTCGGCCT 60.918 57.895 0.00 0.00 0.00 5.19
828 864 1.450312 GTGGATGGAACTCGGCCTG 60.450 63.158 0.00 0.00 0.00 4.85
829 865 1.612146 TGGATGGAACTCGGCCTGA 60.612 57.895 0.00 0.00 0.00 3.86
830 866 1.198094 TGGATGGAACTCGGCCTGAA 61.198 55.000 0.00 0.00 0.00 3.02
831 867 0.035439 GGATGGAACTCGGCCTGAAA 60.035 55.000 0.00 0.00 0.00 2.69
832 868 1.373570 GATGGAACTCGGCCTGAAAG 58.626 55.000 0.00 0.00 0.00 2.62
854 2256 1.691976 CAAAAACCCTTCTTCCCCCAC 59.308 52.381 0.00 0.00 0.00 4.61
880 2287 2.586792 CCCGAGCCCCTGAAAGAG 59.413 66.667 0.00 0.00 34.07 2.85
924 2331 0.037232 GAGAGAAACCCTGTCCACCG 60.037 60.000 0.00 0.00 0.00 4.94
978 2385 0.839946 ATACCACCAGCTAGCTTGGG 59.160 55.000 30.24 24.41 30.34 4.12
1033 2440 2.817056 GCCATCCTGCTCCTCCTCC 61.817 68.421 0.00 0.00 0.00 4.30
1522 2929 1.103803 GCTCACCGTCTACCTCATCA 58.896 55.000 0.00 0.00 0.00 3.07
1583 2990 1.125093 TCGGACACCTTGGTGACCAT 61.125 55.000 29.86 10.37 38.70 3.55
1603 3010 4.521062 GCGTCATGCTCGGGCTCT 62.521 66.667 9.62 0.00 41.73 4.09
1604 3011 2.584418 CGTCATGCTCGGGCTCTG 60.584 66.667 9.62 6.44 39.59 3.35
1633 3045 8.954350 TGTTGTGAGTACTACTACTATTTCCTC 58.046 37.037 0.00 0.00 32.96 3.71
1637 3049 7.171337 GTGAGTACTACTACTATTTCCTCGAGG 59.829 44.444 26.32 26.32 32.96 4.63
1839 3251 1.576356 GTGATCTCCGTCCTTGATGC 58.424 55.000 0.00 0.00 0.00 3.91
1891 3433 2.481276 GGCACTGTTGGTGGAACTTTTC 60.481 50.000 0.00 0.00 45.44 2.29
2006 3707 9.482627 CTTAGTACTCTGATCCATTATTTGTCC 57.517 37.037 0.00 0.00 0.00 4.02
2027 3728 9.575868 TTGTCCCTCAATTAGTACAATTTTGTA 57.424 29.630 0.00 0.00 42.35 2.41
2079 3780 4.848357 ACATTGATCCAAGGGAGTAAGTG 58.152 43.478 0.00 0.00 34.05 3.16
2117 3819 4.517285 TGCTAGCTCAAGGATAAAACAGG 58.483 43.478 17.23 0.00 0.00 4.00
2186 3890 7.671819 AGACTATTGATTGATCGAGGAGGATAA 59.328 37.037 0.00 0.00 0.00 1.75
2211 3920 4.100189 AGAGGTACACATGACAGATTAGGC 59.900 45.833 0.00 0.00 0.00 3.93
2214 3923 4.332819 GGTACACATGACAGATTAGGCAAC 59.667 45.833 0.00 0.00 0.00 4.17
2216 3925 3.009473 ACACATGACAGATTAGGCAACCT 59.991 43.478 0.00 0.00 37.71 3.50
2222 3931 4.042311 TGACAGATTAGGCAACCTTTGGTA 59.958 41.667 0.00 0.00 33.12 3.25
2226 3935 2.460757 TAGGCAACCTTTGGTACGTC 57.539 50.000 0.00 0.00 33.12 4.34
2308 4017 2.095252 GCGAACTCGGGAACTCAGC 61.095 63.158 0.69 0.00 40.23 4.26
2323 4032 1.672363 CTCAGCACAGCAGTTGACAAA 59.328 47.619 0.00 0.00 0.00 2.83
2335 4044 4.674101 GCAGTTGACAAACTAAAGCACACA 60.674 41.667 0.00 0.00 45.07 3.72
2342 4051 6.149640 TGACAAACTAAAGCACACACTAACAA 59.850 34.615 0.00 0.00 0.00 2.83
2377 4086 1.979855 TGTCACCCCACACAGAATTG 58.020 50.000 0.00 0.00 0.00 2.32
2414 4123 0.393077 ACCTGAACGAACCAGTCCAG 59.607 55.000 0.00 0.00 0.00 3.86
2488 4197 2.417107 CGAGAGCTCAGCTGTTCTCAAT 60.417 50.000 28.14 16.60 39.88 2.57
2493 4202 2.630158 CTCAGCTGTTCTCAATGGAGG 58.370 52.381 14.67 0.00 41.69 4.30
2494 4203 1.280133 TCAGCTGTTCTCAATGGAGGG 59.720 52.381 14.67 0.00 41.69 4.30
2495 4204 0.034670 AGCTGTTCTCAATGGAGGGC 60.035 55.000 0.00 0.00 41.69 5.19
2496 4205 0.034670 GCTGTTCTCAATGGAGGGCT 60.035 55.000 0.00 0.00 41.69 5.19
2497 4206 2.016096 GCTGTTCTCAATGGAGGGCTC 61.016 57.143 0.00 0.00 41.69 4.70
2498 4207 1.280133 CTGTTCTCAATGGAGGGCTCA 59.720 52.381 0.00 0.00 41.69 4.26
2499 4208 1.280133 TGTTCTCAATGGAGGGCTCAG 59.720 52.381 0.00 0.00 41.69 3.35
2500 4209 0.254178 TTCTCAATGGAGGGCTCAGC 59.746 55.000 0.00 0.00 41.69 4.26
2501 4210 0.619832 TCTCAATGGAGGGCTCAGCT 60.620 55.000 0.00 0.00 41.69 4.24
2502 4211 0.464013 CTCAATGGAGGGCTCAGCTG 60.464 60.000 7.63 7.63 37.51 4.24
2503 4212 1.203441 TCAATGGAGGGCTCAGCTGT 61.203 55.000 14.67 0.00 0.00 4.40
2504 4213 0.323178 CAATGGAGGGCTCAGCTGTT 60.323 55.000 14.67 0.00 0.00 3.16
2505 4214 0.034670 AATGGAGGGCTCAGCTGTTC 60.035 55.000 14.67 6.52 0.00 3.18
2506 4215 0.913451 ATGGAGGGCTCAGCTGTTCT 60.913 55.000 14.67 7.06 0.00 3.01
2507 4216 1.220477 GGAGGGCTCAGCTGTTCTC 59.780 63.158 14.67 14.83 0.00 2.87
2508 4217 1.548357 GGAGGGCTCAGCTGTTCTCA 61.548 60.000 14.67 0.00 0.00 3.27
2509 4218 0.322975 GAGGGCTCAGCTGTTCTCAA 59.677 55.000 14.67 0.00 0.00 3.02
2510 4219 0.036022 AGGGCTCAGCTGTTCTCAAC 59.964 55.000 14.67 0.00 0.00 3.18
2511 4220 1.294659 GGGCTCAGCTGTTCTCAACG 61.295 60.000 14.67 0.00 0.00 4.10
2512 4221 1.294659 GGCTCAGCTGTTCTCAACGG 61.295 60.000 14.67 0.00 40.80 4.44
2513 4222 0.319900 GCTCAGCTGTTCTCAACGGA 60.320 55.000 14.67 0.00 40.26 4.69
2514 4223 1.707632 CTCAGCTGTTCTCAACGGAG 58.292 55.000 14.67 0.00 40.26 4.63
2526 4257 0.461870 CAACGGAGGAATCGGCATCA 60.462 55.000 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 187 6.393171 GCGGGTCGTCCTTTATATTATAGTT 58.607 40.000 0.00 0.00 0.00 2.24
195 230 4.020617 CCACCAGGCCAGAGCGAA 62.021 66.667 5.01 0.00 41.24 4.70
208 243 3.272334 CGGAGCGCAATAGCCACC 61.272 66.667 11.47 0.00 37.52 4.61
250 285 4.306471 CACGCGCGCCAAGTTTCA 62.306 61.111 32.58 0.00 0.00 2.69
256 291 3.114647 AAAAAGTCACGCGCGCCAA 62.115 52.632 32.58 13.08 0.00 4.52
305 340 6.879188 TGTTCGGACTTGTTTGAAAATTTC 57.121 33.333 0.00 0.00 0.00 2.17
309 344 8.758633 TTTATTTGTTCGGACTTGTTTGAAAA 57.241 26.923 0.00 0.00 0.00 2.29
380 416 7.233348 CCCCCTTGCTTTATACATAATCACATT 59.767 37.037 0.00 0.00 0.00 2.71
537 573 7.450124 TTGGTACCACGATTGCTAATTTTTA 57.550 32.000 16.04 0.00 0.00 1.52
607 643 5.037383 TCACAGGTATACCACAACAACAA 57.963 39.130 23.87 0.00 38.89 2.83
608 644 4.691326 TCACAGGTATACCACAACAACA 57.309 40.909 23.87 0.00 38.89 3.33
610 646 4.006989 GCATCACAGGTATACCACAACAA 58.993 43.478 23.87 4.61 38.89 2.83
611 647 3.263170 AGCATCACAGGTATACCACAACA 59.737 43.478 23.87 4.02 38.89 3.33
612 648 3.873910 AGCATCACAGGTATACCACAAC 58.126 45.455 23.87 6.44 38.89 3.32
613 649 4.141801 GGTAGCATCACAGGTATACCACAA 60.142 45.833 23.87 6.71 38.89 3.33
614 650 3.386726 GGTAGCATCACAGGTATACCACA 59.613 47.826 23.87 4.74 38.89 4.17
615 651 3.641906 AGGTAGCATCACAGGTATACCAC 59.358 47.826 23.87 9.38 38.89 4.16
617 653 4.957684 AAGGTAGCATCACAGGTATACC 57.042 45.455 14.54 14.54 34.22 2.73
618 654 5.914033 TCAAAGGTAGCATCACAGGTATAC 58.086 41.667 0.00 0.00 0.00 1.47
619 655 6.524734 CATCAAAGGTAGCATCACAGGTATA 58.475 40.000 0.00 0.00 0.00 1.47
620 656 5.371526 CATCAAAGGTAGCATCACAGGTAT 58.628 41.667 0.00 0.00 0.00 2.73
621 657 4.769688 CATCAAAGGTAGCATCACAGGTA 58.230 43.478 0.00 0.00 0.00 3.08
622 658 3.614092 CATCAAAGGTAGCATCACAGGT 58.386 45.455 0.00 0.00 0.00 4.00
624 660 2.357009 GGCATCAAAGGTAGCATCACAG 59.643 50.000 0.00 0.00 0.00 3.66
625 661 2.368439 GGCATCAAAGGTAGCATCACA 58.632 47.619 0.00 0.00 0.00 3.58
626 662 1.678101 GGGCATCAAAGGTAGCATCAC 59.322 52.381 0.00 0.00 0.00 3.06
627 663 1.565759 AGGGCATCAAAGGTAGCATCA 59.434 47.619 0.00 0.00 0.00 3.07
628 664 2.355010 AGGGCATCAAAGGTAGCATC 57.645 50.000 0.00 0.00 0.00 3.91
629 665 2.381911 CAAGGGCATCAAAGGTAGCAT 58.618 47.619 0.00 0.00 0.00 3.79
630 666 1.616725 CCAAGGGCATCAAAGGTAGCA 60.617 52.381 0.00 0.00 0.00 3.49
631 667 1.106285 CCAAGGGCATCAAAGGTAGC 58.894 55.000 0.00 0.00 0.00 3.58
644 680 4.646040 TCATTCAATTAGACATGCCAAGGG 59.354 41.667 0.00 0.00 0.00 3.95
645 681 5.735354 GCTCATTCAATTAGACATGCCAAGG 60.735 44.000 0.00 0.00 0.00 3.61
646 682 5.067413 AGCTCATTCAATTAGACATGCCAAG 59.933 40.000 0.00 0.00 0.00 3.61
648 684 4.337274 CAGCTCATTCAATTAGACATGCCA 59.663 41.667 0.00 0.00 0.00 4.92
649 685 4.577693 TCAGCTCATTCAATTAGACATGCC 59.422 41.667 0.00 0.00 0.00 4.40
651 687 6.716438 CAGTCAGCTCATTCAATTAGACATG 58.284 40.000 0.00 0.00 0.00 3.21
652 688 5.296283 GCAGTCAGCTCATTCAATTAGACAT 59.704 40.000 0.00 0.00 41.15 3.06
653 689 4.633126 GCAGTCAGCTCATTCAATTAGACA 59.367 41.667 0.00 0.00 41.15 3.41
681 717 2.046292 CCCTTCCTCCTTTGGCAAAAA 58.954 47.619 14.43 4.09 0.00 1.94
682 718 1.219213 TCCCTTCCTCCTTTGGCAAAA 59.781 47.619 14.43 0.00 0.00 2.44
683 719 0.856982 TCCCTTCCTCCTTTGGCAAA 59.143 50.000 12.79 12.79 0.00 3.68
684 720 0.405585 CTCCCTTCCTCCTTTGGCAA 59.594 55.000 0.00 0.00 0.00 4.52
687 723 2.913617 AGTTACTCCCTTCCTCCTTTGG 59.086 50.000 0.00 0.00 0.00 3.28
688 724 3.583086 TCAGTTACTCCCTTCCTCCTTTG 59.417 47.826 0.00 0.00 0.00 2.77
689 725 3.841255 CTCAGTTACTCCCTTCCTCCTTT 59.159 47.826 0.00 0.00 0.00 3.11
691 727 2.890602 GCTCAGTTACTCCCTTCCTCCT 60.891 54.545 0.00 0.00 0.00 3.69
692 728 1.483004 GCTCAGTTACTCCCTTCCTCC 59.517 57.143 0.00 0.00 0.00 4.30
694 730 1.187087 CGCTCAGTTACTCCCTTCCT 58.813 55.000 0.00 0.00 0.00 3.36
695 731 0.460459 GCGCTCAGTTACTCCCTTCC 60.460 60.000 0.00 0.00 0.00 3.46
696 732 0.246635 TGCGCTCAGTTACTCCCTTC 59.753 55.000 9.73 0.00 0.00 3.46
697 733 0.247736 CTGCGCTCAGTTACTCCCTT 59.752 55.000 9.73 0.00 35.61 3.95
698 734 1.608717 CCTGCGCTCAGTTACTCCCT 61.609 60.000 9.73 0.00 38.66 4.20
699 735 1.153549 CCTGCGCTCAGTTACTCCC 60.154 63.158 9.73 0.00 38.66 4.30
700 736 0.461961 ATCCTGCGCTCAGTTACTCC 59.538 55.000 9.73 0.00 38.66 3.85
701 737 2.197577 GAATCCTGCGCTCAGTTACTC 58.802 52.381 9.73 0.00 38.66 2.59
702 738 1.550524 TGAATCCTGCGCTCAGTTACT 59.449 47.619 9.73 0.00 38.66 2.24
703 739 2.010145 TGAATCCTGCGCTCAGTTAC 57.990 50.000 9.73 0.00 38.66 2.50
704 740 2.233676 TCTTGAATCCTGCGCTCAGTTA 59.766 45.455 9.73 0.00 38.66 2.24
705 741 1.002430 TCTTGAATCCTGCGCTCAGTT 59.998 47.619 9.73 0.00 38.66 3.16
706 742 0.610174 TCTTGAATCCTGCGCTCAGT 59.390 50.000 9.73 0.00 38.66 3.41
708 744 0.321346 TGTCTTGAATCCTGCGCTCA 59.679 50.000 9.73 0.00 0.00 4.26
710 746 1.808945 CTTTGTCTTGAATCCTGCGCT 59.191 47.619 9.73 0.00 0.00 5.92
711 747 1.135575 CCTTTGTCTTGAATCCTGCGC 60.136 52.381 0.00 0.00 0.00 6.09
712 748 1.470098 CCCTTTGTCTTGAATCCTGCG 59.530 52.381 0.00 0.00 0.00 5.18
713 749 2.795329 TCCCTTTGTCTTGAATCCTGC 58.205 47.619 0.00 0.00 0.00 4.85
714 750 5.717119 CAAATCCCTTTGTCTTGAATCCTG 58.283 41.667 0.00 0.00 37.54 3.86
715 751 5.990120 CAAATCCCTTTGTCTTGAATCCT 57.010 39.130 0.00 0.00 37.54 3.24
726 762 1.895131 CCCTCACCACAAATCCCTTTG 59.105 52.381 0.00 0.00 45.92 2.77
727 763 1.503347 ACCCTCACCACAAATCCCTTT 59.497 47.619 0.00 0.00 0.00 3.11
729 765 0.405585 CACCCTCACCACAAATCCCT 59.594 55.000 0.00 0.00 0.00 4.20
730 766 0.112412 ACACCCTCACCACAAATCCC 59.888 55.000 0.00 0.00 0.00 3.85
731 767 1.613437 CAACACCCTCACCACAAATCC 59.387 52.381 0.00 0.00 0.00 3.01
732 768 1.613437 CCAACACCCTCACCACAAATC 59.387 52.381 0.00 0.00 0.00 2.17
734 770 1.040339 GCCAACACCCTCACCACAAA 61.040 55.000 0.00 0.00 0.00 2.83
736 772 2.194597 GCCAACACCCTCACCACA 59.805 61.111 0.00 0.00 0.00 4.17
737 773 2.978010 CGCCAACACCCTCACCAC 60.978 66.667 0.00 0.00 0.00 4.16
755 791 2.677228 CTCATGTCACCCACCCCC 59.323 66.667 0.00 0.00 0.00 5.40
756 792 2.677228 CCTCATGTCACCCACCCC 59.323 66.667 0.00 0.00 0.00 4.95
757 793 2.677228 CCCTCATGTCACCCACCC 59.323 66.667 0.00 0.00 0.00 4.61
758 794 1.281925 ATCCCCTCATGTCACCCACC 61.282 60.000 0.00 0.00 0.00 4.61
759 795 0.625849 AATCCCCTCATGTCACCCAC 59.374 55.000 0.00 0.00 0.00 4.61
761 797 0.918983 TGAATCCCCTCATGTCACCC 59.081 55.000 0.00 0.00 0.00 4.61
762 798 2.044123 GTGAATCCCCTCATGTCACC 57.956 55.000 0.00 0.00 33.95 4.02
784 820 1.636003 GAACCAACTCCTCCAGGGATT 59.364 52.381 0.00 0.00 44.15 3.01
801 837 1.377229 TTCCATCCACACGGGGAAC 59.623 57.895 0.00 0.00 41.12 3.62
805 841 1.447838 CGAGTTCCATCCACACGGG 60.448 63.158 0.00 0.00 38.37 5.28
806 842 1.447838 CCGAGTTCCATCCACACGG 60.448 63.158 0.00 0.00 41.11 4.94
808 844 1.745489 GGCCGAGTTCCATCCACAC 60.745 63.158 0.00 0.00 0.00 3.82
809 845 1.918293 AGGCCGAGTTCCATCCACA 60.918 57.895 0.00 0.00 0.00 4.17
812 848 0.035439 TTTCAGGCCGAGTTCCATCC 60.035 55.000 0.00 0.00 0.00 3.51
813 849 1.373570 CTTTCAGGCCGAGTTCCATC 58.626 55.000 0.00 0.00 0.00 3.51
815 851 1.302511 GCTTTCAGGCCGAGTTCCA 60.303 57.895 0.00 0.00 0.00 3.53
816 852 2.041115 GGCTTTCAGGCCGAGTTCC 61.041 63.158 0.00 0.00 42.82 3.62
824 860 0.758734 AGGGTTTTTGGCTTTCAGGC 59.241 50.000 0.00 0.00 41.77 4.85
826 862 4.371786 GAAGAAGGGTTTTTGGCTTTCAG 58.628 43.478 0.00 0.00 0.00 3.02
827 863 3.133901 GGAAGAAGGGTTTTTGGCTTTCA 59.866 43.478 0.00 0.00 0.00 2.69
828 864 3.494398 GGGAAGAAGGGTTTTTGGCTTTC 60.494 47.826 0.00 0.00 0.00 2.62
829 865 2.438021 GGGAAGAAGGGTTTTTGGCTTT 59.562 45.455 0.00 0.00 0.00 3.51
830 866 2.047061 GGGAAGAAGGGTTTTTGGCTT 58.953 47.619 0.00 0.00 0.00 4.35
831 867 1.717032 GGGAAGAAGGGTTTTTGGCT 58.283 50.000 0.00 0.00 0.00 4.75
832 868 0.685097 GGGGAAGAAGGGTTTTTGGC 59.315 55.000 0.00 0.00 0.00 4.52
834 870 1.691976 GTGGGGGAAGAAGGGTTTTTG 59.308 52.381 0.00 0.00 0.00 2.44
835 871 1.413953 GGTGGGGGAAGAAGGGTTTTT 60.414 52.381 0.00 0.00 0.00 1.94
865 2267 1.153469 GAGCTCTTTCAGGGGCTCG 60.153 63.158 6.43 0.00 41.03 5.03
873 2280 1.672356 GCTTGGCCGAGCTCTTTCA 60.672 57.895 34.14 3.96 39.57 2.69
894 2301 1.149148 GTTTCTCTCGGCTGGTGTTC 58.851 55.000 0.00 0.00 0.00 3.18
924 2331 5.203060 AGAAGCGAGAATAATGGAGGTAC 57.797 43.478 0.00 0.00 0.00 3.34
978 2385 2.476320 GCTTGATTCCCCTGCTCGC 61.476 63.158 0.00 0.00 0.00 5.03
1522 2929 4.675029 CGGAACCAGGACGGCGTT 62.675 66.667 16.19 0.00 39.03 4.84
1571 2978 0.240945 GACGCAAATGGTCACCAAGG 59.759 55.000 0.00 0.00 36.95 3.61
1583 2990 3.430862 GCCCGAGCATGACGCAAA 61.431 61.111 0.00 0.00 46.13 3.68
1603 3010 8.818622 AATAGTAGTAGTACTCACAACATCCA 57.181 34.615 13.60 0.00 40.23 3.41
1604 3011 9.733219 GAAATAGTAGTAGTACTCACAACATCC 57.267 37.037 13.60 0.00 40.23 3.51
1654 3066 6.264292 GTCCATTCTCTAAGATCTGCTGAGTA 59.736 42.308 15.16 9.38 0.00 2.59
1851 3263 2.974489 CTTTGCCCACTGCGCTGAG 61.974 63.158 21.92 13.11 45.60 3.35
1987 3688 5.933617 TGAGGGACAAATAATGGATCAGAG 58.066 41.667 0.00 0.00 0.00 3.35
2022 3723 7.571983 GCTCACTTAGTACGACTACAGTACAAA 60.572 40.741 8.86 0.00 44.92 2.83
2027 3728 4.321718 TGCTCACTTAGTACGACTACAGT 58.678 43.478 0.00 0.00 28.93 3.55
2030 3731 5.039480 TGTTGCTCACTTAGTACGACTAC 57.961 43.478 0.00 0.00 28.93 2.73
2037 3738 9.278978 TCAATGTTATTTGTTGCTCACTTAGTA 57.721 29.630 0.00 0.00 0.00 1.82
2079 3780 7.202526 TGAGCTAGCAATATAATGTTTTTGCC 58.797 34.615 18.83 0.00 44.21 4.52
2117 3819 2.564721 GCAGGTGTGGGCAGGTTTC 61.565 63.158 0.00 0.00 0.00 2.78
2186 3890 5.127845 CCTAATCTGTCATGTGTACCTCTGT 59.872 44.000 0.00 0.00 0.00 3.41
2211 3920 2.656192 CGTTGACGTACCAAAGGTTG 57.344 50.000 0.00 0.00 37.09 3.77
2226 3935 6.516355 CGATTCTGTGATCTGTAAAAACGTTG 59.484 38.462 0.00 0.00 0.00 4.10
2231 3940 5.000591 TGGCGATTCTGTGATCTGTAAAAA 58.999 37.500 0.00 0.00 0.00 1.94
2239 3948 0.654683 GCAGTGGCGATTCTGTGATC 59.345 55.000 0.00 0.00 34.57 2.92
2308 4017 4.037690 GCTTTAGTTTGTCAACTGCTGTG 58.962 43.478 0.00 0.00 43.54 3.66
2323 4032 4.638421 TGCTTTGTTAGTGTGTGCTTTAGT 59.362 37.500 0.00 0.00 0.00 2.24
2335 4044 3.891366 AGGCATTTCAGTGCTTTGTTAGT 59.109 39.130 0.00 0.00 44.45 2.24
2342 4051 2.035066 GTGACAAGGCATTTCAGTGCTT 59.965 45.455 0.00 0.00 44.45 3.91
2377 4086 3.124636 CAGGTTGCGGTGTTTATACAGTC 59.875 47.826 0.00 0.00 34.24 3.51
2414 4123 3.680458 GGTTAGTGAGCAAGTCTTGTAGC 59.320 47.826 14.03 0.00 0.00 3.58
2488 4197 1.537397 AGAACAGCTGAGCCCTCCA 60.537 57.895 23.35 0.00 0.00 3.86
2493 4202 1.294659 CCGTTGAGAACAGCTGAGCC 61.295 60.000 23.35 8.66 0.00 4.70
2494 4203 0.319900 TCCGTTGAGAACAGCTGAGC 60.320 55.000 23.35 11.64 0.00 4.26
2495 4204 1.671261 CCTCCGTTGAGAACAGCTGAG 60.671 57.143 23.35 2.45 41.42 3.35
2496 4205 0.318441 CCTCCGTTGAGAACAGCTGA 59.682 55.000 23.35 0.00 41.42 4.26
2497 4206 0.318441 TCCTCCGTTGAGAACAGCTG 59.682 55.000 13.48 13.48 41.42 4.24
2498 4207 1.048601 TTCCTCCGTTGAGAACAGCT 58.951 50.000 0.00 0.00 41.42 4.24
2499 4208 2.003301 GATTCCTCCGTTGAGAACAGC 58.997 52.381 0.00 0.00 41.42 4.40
2500 4209 2.263077 CGATTCCTCCGTTGAGAACAG 58.737 52.381 0.00 0.00 41.42 3.16
2501 4210 1.067142 CCGATTCCTCCGTTGAGAACA 60.067 52.381 0.00 0.00 41.42 3.18
2502 4211 1.641577 CCGATTCCTCCGTTGAGAAC 58.358 55.000 0.00 0.00 41.42 3.01
2503 4212 0.108329 GCCGATTCCTCCGTTGAGAA 60.108 55.000 0.00 0.00 41.42 2.87
2504 4213 1.254975 TGCCGATTCCTCCGTTGAGA 61.255 55.000 0.00 0.00 41.42 3.27
2505 4214 0.179073 ATGCCGATTCCTCCGTTGAG 60.179 55.000 0.00 0.00 38.42 3.02
2506 4215 0.179084 GATGCCGATTCCTCCGTTGA 60.179 55.000 0.00 0.00 0.00 3.18
2507 4216 0.461870 TGATGCCGATTCCTCCGTTG 60.462 55.000 0.00 0.00 0.00 4.10
2508 4217 0.462047 GTGATGCCGATTCCTCCGTT 60.462 55.000 0.00 0.00 0.00 4.44
2509 4218 1.144057 GTGATGCCGATTCCTCCGT 59.856 57.895 0.00 0.00 0.00 4.69
2510 4219 1.595382 GGTGATGCCGATTCCTCCG 60.595 63.158 0.00 0.00 0.00 4.63
2511 4220 1.227973 GGGTGATGCCGATTCCTCC 60.228 63.158 0.00 0.00 38.44 4.30
2512 4221 0.181350 AAGGGTGATGCCGATTCCTC 59.819 55.000 0.00 0.00 38.44 3.71
2513 4222 0.107017 CAAGGGTGATGCCGATTCCT 60.107 55.000 0.00 0.00 38.44 3.36
2514 4223 0.394352 ACAAGGGTGATGCCGATTCC 60.394 55.000 0.00 0.00 38.44 3.01
2526 4257 0.543174 AGAAGCTCGAGGACAAGGGT 60.543 55.000 15.58 0.00 0.00 4.34
2631 4362 2.489073 GGATGGTGACTTTGAGGTGGTT 60.489 50.000 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.