Multiple sequence alignment - TraesCS2B01G203700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G203700 chr2B 100.000 2575 0 0 1 2575 183264085 183261511 0.000000e+00 4756.0
1 TraesCS2B01G203700 chr2B 87.551 972 104 10 1615 2575 76605529 76604564 0.000000e+00 1109.0
2 TraesCS2B01G203700 chr2B 87.230 971 106 11 1615 2575 369532854 369533816 0.000000e+00 1090.0
3 TraesCS2B01G203700 chr2B 84.821 448 65 3 1 446 256948453 256948899 5.050000e-122 448.0
4 TraesCS2B01G203700 chr2B 82.594 293 29 11 1151 1436 184661329 184661606 3.310000e-59 239.0
5 TraesCS2B01G203700 chr2B 91.919 99 8 0 1071 1169 794021057 794020959 3.450000e-29 139.0
6 TraesCS2B01G203700 chr1B 87.745 971 100 12 1615 2574 208474866 208475828 0.000000e+00 1116.0
7 TraesCS2B01G203700 chr3B 87.564 973 103 11 1615 2575 154643937 154644903 0.000000e+00 1110.0
8 TraesCS2B01G203700 chr3B 77.056 231 42 11 469 693 486819506 486819281 3.480000e-24 122.0
9 TraesCS2B01G203700 chr3B 94.444 36 2 0 661 696 621533516 621533551 3.580000e-04 56.5
10 TraesCS2B01G203700 chr4B 87.578 966 100 11 1620 2575 395275674 395274719 0.000000e+00 1101.0
11 TraesCS2B01G203700 chr4B 91.304 115 10 0 1071 1185 668616337 668616223 9.540000e-35 158.0
12 TraesCS2B01G203700 chr6B 87.397 968 106 9 1620 2575 403406413 403405450 0.000000e+00 1098.0
13 TraesCS2B01G203700 chr6B 86.921 971 111 12 1615 2575 171100655 171099691 0.000000e+00 1075.0
14 TraesCS2B01G203700 chr7B 87.100 969 106 11 1615 2571 290561707 290560746 0.000000e+00 1079.0
15 TraesCS2B01G203700 chr7B 86.715 971 115 8 1615 2575 260752668 260751702 0.000000e+00 1066.0
16 TraesCS2B01G203700 chr2D 86.369 807 48 16 759 1526 129945869 129945086 0.000000e+00 824.0
17 TraesCS2B01G203700 chr2D 84.978 446 67 0 1 446 158100165 158099720 1.090000e-123 453.0
18 TraesCS2B01G203700 chr2D 81.858 452 53 13 763 1202 129839799 129839365 1.130000e-93 353.0
19 TraesCS2B01G203700 chr2D 88.095 252 24 2 1143 1392 131162104 131162351 6.970000e-76 294.0
20 TraesCS2B01G203700 chr2D 94.118 119 7 0 1143 1261 129839385 129839267 5.660000e-42 182.0
21 TraesCS2B01G203700 chr2D 97.059 34 1 0 1522 1555 129942627 129942594 9.950000e-05 58.4
22 TraesCS2B01G203700 chr1D 86.079 431 60 0 16 446 63606690 63606260 5.020000e-127 464.0
23 TraesCS2B01G203700 chr7D 85.426 446 64 1 1 446 230429190 230428746 1.810000e-126 462.0
24 TraesCS2B01G203700 chr7D 84.633 449 63 6 1 446 32700594 32701039 2.350000e-120 442.0
25 TraesCS2B01G203700 chr7D 83.184 446 75 0 1 446 108989982 108989537 2.390000e-110 409.0
26 TraesCS2B01G203700 chr4D 84.753 446 64 2 1 446 134691667 134692108 6.540000e-121 444.0
27 TraesCS2B01G203700 chr4D 84.564 447 66 3 1 446 307227001 307226557 8.460000e-120 440.0
28 TraesCS2B01G203700 chr5B 87.500 384 46 2 1 383 507556132 507555750 2.350000e-120 442.0
29 TraesCS2B01G203700 chr5B 85.981 107 13 2 445 550 507541172 507541067 2.090000e-21 113.0
30 TraesCS2B01G203700 chr5B 97.059 34 1 0 660 693 56645960 56645927 9.950000e-05 58.4
31 TraesCS2B01G203700 chr2A 80.087 462 46 19 933 1350 137256256 137256715 4.160000e-78 302.0
32 TraesCS2B01G203700 chr2A 83.471 121 17 3 578 697 657481529 657481647 2.710000e-20 110.0
33 TraesCS2B01G203700 chr2A 88.889 45 3 2 657 700 759336410 759336367 1.000000e-03 54.7
34 TraesCS2B01G203700 chr6A 85.542 249 29 7 444 689 567939130 567939374 1.180000e-63 254.0
35 TraesCS2B01G203700 chrUn 84.528 265 25 7 1143 1395 17475786 17475526 5.500000e-62 248.0
36 TraesCS2B01G203700 chr4A 94.737 38 0 2 660 696 567473283 567473247 9.950000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G203700 chr2B 183261511 183264085 2574 True 4756.0 4756 100.000 1 2575 1 chr2B.!!$R2 2574
1 TraesCS2B01G203700 chr2B 76604564 76605529 965 True 1109.0 1109 87.551 1615 2575 1 chr2B.!!$R1 960
2 TraesCS2B01G203700 chr2B 369532854 369533816 962 False 1090.0 1090 87.230 1615 2575 1 chr2B.!!$F3 960
3 TraesCS2B01G203700 chr1B 208474866 208475828 962 False 1116.0 1116 87.745 1615 2574 1 chr1B.!!$F1 959
4 TraesCS2B01G203700 chr3B 154643937 154644903 966 False 1110.0 1110 87.564 1615 2575 1 chr3B.!!$F1 960
5 TraesCS2B01G203700 chr4B 395274719 395275674 955 True 1101.0 1101 87.578 1620 2575 1 chr4B.!!$R1 955
6 TraesCS2B01G203700 chr6B 403405450 403406413 963 True 1098.0 1098 87.397 1620 2575 1 chr6B.!!$R2 955
7 TraesCS2B01G203700 chr6B 171099691 171100655 964 True 1075.0 1075 86.921 1615 2575 1 chr6B.!!$R1 960
8 TraesCS2B01G203700 chr7B 290560746 290561707 961 True 1079.0 1079 87.100 1615 2571 1 chr7B.!!$R2 956
9 TraesCS2B01G203700 chr7B 260751702 260752668 966 True 1066.0 1066 86.715 1615 2575 1 chr7B.!!$R1 960
10 TraesCS2B01G203700 chr2D 129942594 129945869 3275 True 441.2 824 91.714 759 1555 2 chr2D.!!$R3 796
11 TraesCS2B01G203700 chr2D 129839267 129839799 532 True 267.5 353 87.988 763 1261 2 chr2D.!!$R2 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
693 694 0.033228 CGGCTGGAGATGCTCTTAGG 59.967 60.0 0.0 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2284 4849 0.175073 GATTAACTGTCCGGCTCCGT 59.825 55.0 7.59 0.0 37.81 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.203070 CATGGCCGAGTGCTACCC 60.203 66.667 0.00 0.00 40.92 3.69
18 19 3.480133 ATGGCCGAGTGCTACCCC 61.480 66.667 0.00 0.00 40.92 4.95
24 25 4.509737 GAGTGCTACCCCGGCGAC 62.510 72.222 9.30 0.00 0.00 5.19
71 72 3.680786 CCACCTGCACGAGGACGA 61.681 66.667 0.00 0.00 46.33 4.20
72 73 2.126307 CACCTGCACGAGGACGAG 60.126 66.667 0.00 0.00 46.33 4.18
73 74 3.374402 ACCTGCACGAGGACGAGG 61.374 66.667 0.00 0.00 46.33 4.63
74 75 4.803426 CCTGCACGAGGACGAGGC 62.803 72.222 0.00 0.00 46.33 4.70
75 76 4.803426 CTGCACGAGGACGAGGCC 62.803 72.222 0.00 0.00 42.66 5.19
77 78 4.803426 GCACGAGGACGAGGCCTG 62.803 72.222 12.00 5.11 42.66 4.85
78 79 4.803426 CACGAGGACGAGGCCTGC 62.803 72.222 12.00 0.00 42.66 4.85
88 89 4.309879 AGGCCTGCCTCCTCTATG 57.690 61.111 3.11 0.00 44.43 2.23
89 90 1.628727 AGGCCTGCCTCCTCTATGA 59.371 57.895 3.11 0.00 44.43 2.15
90 91 0.471591 AGGCCTGCCTCCTCTATGAG 60.472 60.000 3.11 0.00 44.43 2.90
101 102 2.096248 CCTCTATGAGGCGGACTATCC 58.904 57.143 0.27 0.00 43.29 2.59
110 111 4.603946 GGACTATCCGGCGCCACC 62.604 72.222 28.98 13.06 0.00 4.61
145 146 2.583593 GCTCGTGGAGGCTTAGCG 60.584 66.667 0.00 0.00 0.00 4.26
146 147 2.583593 CTCGTGGAGGCTTAGCGC 60.584 66.667 0.00 0.00 38.13 5.92
186 187 4.767255 CCGCCCTCTGGTGCTGAC 62.767 72.222 0.00 0.00 41.05 3.51
187 188 4.767255 CGCCCTCTGGTGCTGACC 62.767 72.222 0.00 0.00 43.48 4.02
188 189 4.767255 GCCCTCTGGTGCTGACCG 62.767 72.222 0.00 0.00 46.62 4.79
215 216 4.835927 GATCGTGCGGATCCAGTT 57.164 55.556 13.41 0.00 44.86 3.16
216 217 2.301505 GATCGTGCGGATCCAGTTG 58.698 57.895 13.41 0.00 44.86 3.16
217 218 0.460284 GATCGTGCGGATCCAGTTGT 60.460 55.000 13.41 0.00 44.86 3.32
218 219 0.460284 ATCGTGCGGATCCAGTTGTC 60.460 55.000 13.41 0.00 0.00 3.18
219 220 2.444624 CGTGCGGATCCAGTTGTCG 61.445 63.158 13.41 3.67 0.00 4.35
220 221 2.434185 TGCGGATCCAGTTGTCGC 60.434 61.111 13.41 7.93 45.60 5.19
221 222 2.125512 GCGGATCCAGTTGTCGCT 60.126 61.111 13.41 0.00 42.62 4.93
222 223 2.456119 GCGGATCCAGTTGTCGCTG 61.456 63.158 13.41 0.00 42.62 5.18
223 224 2.456119 CGGATCCAGTTGTCGCTGC 61.456 63.158 13.41 0.00 35.28 5.25
224 225 2.109126 GGATCCAGTTGTCGCTGCC 61.109 63.158 6.95 0.00 35.28 4.85
225 226 1.375908 GATCCAGTTGTCGCTGCCA 60.376 57.895 0.00 0.00 35.28 4.92
226 227 1.364626 GATCCAGTTGTCGCTGCCAG 61.365 60.000 0.00 0.00 35.28 4.85
227 228 1.830587 ATCCAGTTGTCGCTGCCAGA 61.831 55.000 0.00 0.00 35.28 3.86
228 229 2.031516 CCAGTTGTCGCTGCCAGAG 61.032 63.158 0.00 0.00 35.28 3.35
229 230 1.005748 CAGTTGTCGCTGCCAGAGA 60.006 57.895 0.00 0.00 0.00 3.10
230 231 1.013005 CAGTTGTCGCTGCCAGAGAG 61.013 60.000 0.00 0.00 0.00 3.20
231 232 2.047844 TTGTCGCTGCCAGAGAGC 60.048 61.111 0.00 0.00 0.00 4.09
253 254 2.728817 GGATCCAGCCGAGGTACG 59.271 66.667 6.95 0.00 42.18 3.67
254 255 2.027751 GATCCAGCCGAGGTACGC 59.972 66.667 0.00 0.00 41.07 4.42
255 256 3.501458 GATCCAGCCGAGGTACGCC 62.501 68.421 0.00 0.00 41.07 5.68
263 264 3.152400 GAGGTACGCCCCCGACAT 61.152 66.667 0.00 0.00 38.29 3.06
264 265 3.148031 GAGGTACGCCCCCGACATC 62.148 68.421 0.00 0.00 38.29 3.06
265 266 4.231439 GGTACGCCCCCGACATCC 62.231 72.222 0.00 0.00 38.29 3.51
266 267 3.463585 GTACGCCCCCGACATCCA 61.464 66.667 0.00 0.00 38.29 3.41
267 268 3.463585 TACGCCCCCGACATCCAC 61.464 66.667 0.00 0.00 38.29 4.02
270 271 4.028490 GCCCCCGACATCCACACA 62.028 66.667 0.00 0.00 0.00 3.72
271 272 2.046314 CCCCCGACATCCACACAC 60.046 66.667 0.00 0.00 0.00 3.82
272 273 2.592993 CCCCCGACATCCACACACT 61.593 63.158 0.00 0.00 0.00 3.55
273 274 1.261938 CCCCCGACATCCACACACTA 61.262 60.000 0.00 0.00 0.00 2.74
274 275 0.830648 CCCCGACATCCACACACTAT 59.169 55.000 0.00 0.00 0.00 2.12
275 276 1.473257 CCCCGACATCCACACACTATG 60.473 57.143 0.00 0.00 0.00 2.23
276 277 1.473257 CCCGACATCCACACACTATGG 60.473 57.143 0.00 0.00 38.71 2.74
281 282 1.594833 TCCACACACTATGGACGGC 59.405 57.895 0.00 0.00 41.47 5.68
282 283 1.809619 CCACACACTATGGACGGCG 60.810 63.158 4.80 4.80 39.87 6.46
283 284 1.080093 CACACACTATGGACGGCGT 60.080 57.895 14.65 14.65 0.00 5.68
284 285 0.171679 CACACACTATGGACGGCGTA 59.828 55.000 14.74 0.00 0.00 4.42
285 286 0.454600 ACACACTATGGACGGCGTAG 59.545 55.000 14.74 9.59 0.00 3.51
286 287 0.454600 CACACTATGGACGGCGTAGT 59.545 55.000 14.74 10.38 0.00 2.73
287 288 1.135199 CACACTATGGACGGCGTAGTT 60.135 52.381 14.74 2.52 0.00 2.24
288 289 1.133790 ACACTATGGACGGCGTAGTTC 59.866 52.381 14.74 0.00 0.00 3.01
289 290 0.379669 ACTATGGACGGCGTAGTTCG 59.620 55.000 14.74 4.42 43.12 3.95
290 291 0.659427 CTATGGACGGCGTAGTTCGA 59.341 55.000 14.74 0.00 42.86 3.71
291 292 0.378257 TATGGACGGCGTAGTTCGAC 59.622 55.000 14.74 0.00 45.27 4.20
292 293 2.202531 GGACGGCGTAGTTCGACC 60.203 66.667 14.74 3.79 46.11 4.79
299 300 4.424566 GTAGTTCGACCGCCGCCA 62.425 66.667 0.00 0.00 38.37 5.69
300 301 4.424566 TAGTTCGACCGCCGCCAC 62.425 66.667 0.00 0.00 38.37 5.01
312 313 4.803426 CGCCACTCCGACCAGCTC 62.803 72.222 0.00 0.00 0.00 4.09
313 314 4.803426 GCCACTCCGACCAGCTCG 62.803 72.222 0.00 0.00 42.54 5.03
314 315 4.803426 CCACTCCGACCAGCTCGC 62.803 72.222 0.00 0.00 41.46 5.03
315 316 4.803426 CACTCCGACCAGCTCGCC 62.803 72.222 0.00 0.00 41.46 5.54
337 338 2.582498 CGAACAGCGTCGATCCCC 60.582 66.667 0.00 0.00 43.86 4.81
338 339 2.577059 GAACAGCGTCGATCCCCA 59.423 61.111 0.00 0.00 0.00 4.96
339 340 1.810030 GAACAGCGTCGATCCCCAC 60.810 63.158 0.00 0.00 0.00 4.61
340 341 3.642778 AACAGCGTCGATCCCCACG 62.643 63.158 0.00 2.84 39.09 4.94
341 342 4.873129 CAGCGTCGATCCCCACGG 62.873 72.222 0.00 0.00 36.50 4.94
343 344 4.867599 GCGTCGATCCCCACGGAC 62.868 72.222 0.00 0.00 42.48 4.79
344 345 4.547905 CGTCGATCCCCACGGACG 62.548 72.222 4.56 4.56 42.48 4.79
345 346 4.867599 GTCGATCCCCACGGACGC 62.868 72.222 0.00 0.00 42.48 5.19
348 349 4.222847 GATCCCCACGGACGCCTC 62.223 72.222 0.00 0.00 42.48 4.70
352 353 4.003788 CCCACGGACGCCTCAACT 62.004 66.667 0.00 0.00 0.00 3.16
353 354 2.432628 CCACGGACGCCTCAACTC 60.433 66.667 0.00 0.00 0.00 3.01
354 355 2.432628 CACGGACGCCTCAACTCC 60.433 66.667 0.00 0.00 0.00 3.85
357 358 2.182030 GGACGCCTCAACTCCGAG 59.818 66.667 0.00 0.00 0.00 4.63
381 382 3.124921 CGTCAATGGTGGGGCGTC 61.125 66.667 0.00 0.00 0.00 5.19
382 383 2.750237 GTCAATGGTGGGGCGTCC 60.750 66.667 0.00 0.00 0.00 4.79
405 406 3.423154 CGCACCCTCAAAGCCGTC 61.423 66.667 0.00 0.00 0.00 4.79
406 407 3.056328 GCACCCTCAAAGCCGTCC 61.056 66.667 0.00 0.00 0.00 4.79
407 408 2.750350 CACCCTCAAAGCCGTCCT 59.250 61.111 0.00 0.00 0.00 3.85
408 409 1.376037 CACCCTCAAAGCCGTCCTC 60.376 63.158 0.00 0.00 0.00 3.71
409 410 2.125512 CCCTCAAAGCCGTCCTCG 60.126 66.667 0.00 0.00 0.00 4.63
410 411 2.646175 CCCTCAAAGCCGTCCTCGA 61.646 63.158 0.00 0.00 39.71 4.04
411 412 1.153745 CCTCAAAGCCGTCCTCGAG 60.154 63.158 5.13 5.13 39.71 4.04
412 413 1.807573 CTCAAAGCCGTCCTCGAGC 60.808 63.158 6.99 0.00 39.71 5.03
413 414 2.048222 CAAAGCCGTCCTCGAGCA 60.048 61.111 6.99 0.00 39.71 4.26
414 415 2.048127 AAAGCCGTCCTCGAGCAC 60.048 61.111 6.99 0.19 39.71 4.40
415 416 2.867855 AAAGCCGTCCTCGAGCACA 61.868 57.895 7.38 0.00 39.71 4.57
416 417 2.172483 AAAGCCGTCCTCGAGCACAT 62.172 55.000 7.38 0.00 39.71 3.21
417 418 2.564553 AAGCCGTCCTCGAGCACATC 62.565 60.000 7.38 0.00 39.71 3.06
426 427 2.583593 GAGCACATCGAGGCCGTC 60.584 66.667 0.00 0.00 37.05 4.79
427 428 3.356639 GAGCACATCGAGGCCGTCA 62.357 63.158 0.00 0.00 37.05 4.35
428 429 2.434185 GCACATCGAGGCCGTCAA 60.434 61.111 0.00 0.00 37.05 3.18
429 430 2.740714 GCACATCGAGGCCGTCAAC 61.741 63.158 0.00 0.00 37.05 3.18
430 431 1.079819 CACATCGAGGCCGTCAACT 60.080 57.895 0.00 0.00 37.05 3.16
431 432 1.078759 CACATCGAGGCCGTCAACTC 61.079 60.000 0.00 0.00 37.05 3.01
441 442 4.430423 GTCAACTCGCCGCGCTTG 62.430 66.667 8.21 11.78 0.00 4.01
447 448 4.980805 TCGCCGCGCTTGGAGTTT 62.981 61.111 8.21 0.00 0.00 2.66
448 449 4.741781 CGCCGCGCTTGGAGTTTG 62.742 66.667 5.56 0.00 0.00 2.93
449 450 3.660111 GCCGCGCTTGGAGTTTGT 61.660 61.111 5.56 0.00 0.00 2.83
450 451 3.030652 CCGCGCTTGGAGTTTGTT 58.969 55.556 5.56 0.00 0.00 2.83
451 452 1.358759 CCGCGCTTGGAGTTTGTTT 59.641 52.632 5.56 0.00 0.00 2.83
452 453 0.248866 CCGCGCTTGGAGTTTGTTTT 60.249 50.000 5.56 0.00 0.00 2.43
453 454 1.555477 CGCGCTTGGAGTTTGTTTTT 58.445 45.000 5.56 0.00 0.00 1.94
454 455 1.255084 CGCGCTTGGAGTTTGTTTTTG 59.745 47.619 5.56 0.00 0.00 2.44
455 456 2.267426 GCGCTTGGAGTTTGTTTTTGT 58.733 42.857 0.00 0.00 0.00 2.83
456 457 2.670905 GCGCTTGGAGTTTGTTTTTGTT 59.329 40.909 0.00 0.00 0.00 2.83
457 458 3.860536 GCGCTTGGAGTTTGTTTTTGTTA 59.139 39.130 0.00 0.00 0.00 2.41
458 459 4.506288 GCGCTTGGAGTTTGTTTTTGTTAT 59.494 37.500 0.00 0.00 0.00 1.89
459 460 5.688176 GCGCTTGGAGTTTGTTTTTGTTATA 59.312 36.000 0.00 0.00 0.00 0.98
460 461 6.364976 GCGCTTGGAGTTTGTTTTTGTTATAT 59.635 34.615 0.00 0.00 0.00 0.86
461 462 7.095816 GCGCTTGGAGTTTGTTTTTGTTATATT 60.096 33.333 0.00 0.00 0.00 1.28
462 463 9.400638 CGCTTGGAGTTTGTTTTTGTTATATTA 57.599 29.630 0.00 0.00 0.00 0.98
501 502 7.804614 TGTACAAATATGAATGAAAAACCGC 57.195 32.000 0.00 0.00 0.00 5.68
502 503 6.809196 TGTACAAATATGAATGAAAAACCGCC 59.191 34.615 0.00 0.00 0.00 6.13
503 504 5.788450 ACAAATATGAATGAAAAACCGCCA 58.212 33.333 0.00 0.00 0.00 5.69
504 505 5.868801 ACAAATATGAATGAAAAACCGCCAG 59.131 36.000 0.00 0.00 0.00 4.85
505 506 5.913137 AATATGAATGAAAAACCGCCAGA 57.087 34.783 0.00 0.00 0.00 3.86
506 507 6.469782 AATATGAATGAAAAACCGCCAGAT 57.530 33.333 0.00 0.00 0.00 2.90
507 508 7.581213 AATATGAATGAAAAACCGCCAGATA 57.419 32.000 0.00 0.00 0.00 1.98
508 509 7.765695 ATATGAATGAAAAACCGCCAGATAT 57.234 32.000 0.00 0.00 0.00 1.63
509 510 5.913137 TGAATGAAAAACCGCCAGATATT 57.087 34.783 0.00 0.00 0.00 1.28
510 511 7.581213 ATGAATGAAAAACCGCCAGATATTA 57.419 32.000 0.00 0.00 0.00 0.98
511 512 7.026631 TGAATGAAAAACCGCCAGATATTAG 57.973 36.000 0.00 0.00 0.00 1.73
512 513 4.893424 TGAAAAACCGCCAGATATTAGC 57.107 40.909 0.00 0.00 0.00 3.09
513 514 3.630312 TGAAAAACCGCCAGATATTAGCC 59.370 43.478 0.00 0.00 0.00 3.93
514 515 1.878953 AAACCGCCAGATATTAGCCG 58.121 50.000 0.00 0.00 0.00 5.52
515 516 0.602905 AACCGCCAGATATTAGCCGC 60.603 55.000 0.00 0.00 0.00 6.53
516 517 1.005037 CCGCCAGATATTAGCCGCA 60.005 57.895 0.00 0.00 0.00 5.69
517 518 0.391661 CCGCCAGATATTAGCCGCAT 60.392 55.000 0.00 0.00 0.00 4.73
518 519 1.442769 CGCCAGATATTAGCCGCATT 58.557 50.000 0.00 0.00 0.00 3.56
519 520 1.806542 CGCCAGATATTAGCCGCATTT 59.193 47.619 0.00 0.00 0.00 2.32
520 521 2.413239 CGCCAGATATTAGCCGCATTTG 60.413 50.000 0.00 0.00 0.00 2.32
521 522 2.554032 GCCAGATATTAGCCGCATTTGT 59.446 45.455 0.00 0.00 0.00 2.83
522 523 3.610114 GCCAGATATTAGCCGCATTTGTG 60.610 47.826 0.00 0.00 0.00 3.33
523 524 3.565482 CCAGATATTAGCCGCATTTGTGT 59.435 43.478 0.00 0.00 0.00 3.72
524 525 4.319766 CCAGATATTAGCCGCATTTGTGTC 60.320 45.833 0.00 0.00 0.00 3.67
525 526 4.512944 CAGATATTAGCCGCATTTGTGTCT 59.487 41.667 0.00 0.00 0.00 3.41
526 527 5.008019 CAGATATTAGCCGCATTTGTGTCTT 59.992 40.000 0.00 0.00 0.00 3.01
527 528 5.590259 AGATATTAGCCGCATTTGTGTCTTT 59.410 36.000 0.00 0.00 0.00 2.52
528 529 4.519540 ATTAGCCGCATTTGTGTCTTTT 57.480 36.364 0.00 0.00 0.00 2.27
529 530 2.422276 AGCCGCATTTGTGTCTTTTC 57.578 45.000 0.00 0.00 0.00 2.29
530 531 1.000274 AGCCGCATTTGTGTCTTTTCC 60.000 47.619 0.00 0.00 0.00 3.13
531 532 1.685302 CCGCATTTGTGTCTTTTCCG 58.315 50.000 0.00 0.00 0.00 4.30
532 533 1.001815 CCGCATTTGTGTCTTTTCCGT 60.002 47.619 0.00 0.00 0.00 4.69
533 534 2.307049 CGCATTTGTGTCTTTTCCGTC 58.693 47.619 0.00 0.00 0.00 4.79
534 535 2.032030 CGCATTTGTGTCTTTTCCGTCT 60.032 45.455 0.00 0.00 0.00 4.18
535 536 3.185594 CGCATTTGTGTCTTTTCCGTCTA 59.814 43.478 0.00 0.00 0.00 2.59
536 537 4.319190 CGCATTTGTGTCTTTTCCGTCTAA 60.319 41.667 0.00 0.00 0.00 2.10
537 538 5.616866 CGCATTTGTGTCTTTTCCGTCTAAT 60.617 40.000 0.00 0.00 0.00 1.73
538 539 6.149633 GCATTTGTGTCTTTTCCGTCTAATT 58.850 36.000 0.00 0.00 0.00 1.40
539 540 6.640907 GCATTTGTGTCTTTTCCGTCTAATTT 59.359 34.615 0.00 0.00 0.00 1.82
540 541 7.169140 GCATTTGTGTCTTTTCCGTCTAATTTT 59.831 33.333 0.00 0.00 0.00 1.82
541 542 9.672086 CATTTGTGTCTTTTCCGTCTAATTTTA 57.328 29.630 0.00 0.00 0.00 1.52
542 543 9.893305 ATTTGTGTCTTTTCCGTCTAATTTTAG 57.107 29.630 0.00 0.00 0.00 1.85
543 544 6.894828 TGTGTCTTTTCCGTCTAATTTTAGC 58.105 36.000 0.00 0.00 0.00 3.09
544 545 6.072893 TGTGTCTTTTCCGTCTAATTTTAGCC 60.073 38.462 0.00 0.00 0.00 3.93
545 546 5.121142 TGTCTTTTCCGTCTAATTTTAGCCG 59.879 40.000 0.00 0.00 32.48 5.52
546 547 5.349543 GTCTTTTCCGTCTAATTTTAGCCGA 59.650 40.000 2.62 0.00 34.38 5.54
547 548 5.933463 TCTTTTCCGTCTAATTTTAGCCGAA 59.067 36.000 2.62 0.00 34.38 4.30
548 549 5.789710 TTTCCGTCTAATTTTAGCCGAAG 57.210 39.130 2.62 0.00 34.38 3.79
549 550 4.460948 TCCGTCTAATTTTAGCCGAAGT 57.539 40.909 2.62 0.00 34.38 3.01
550 551 4.824289 TCCGTCTAATTTTAGCCGAAGTT 58.176 39.130 2.62 0.00 34.38 2.66
551 552 4.866486 TCCGTCTAATTTTAGCCGAAGTTC 59.134 41.667 2.62 0.00 34.38 3.01
552 553 4.628333 CCGTCTAATTTTAGCCGAAGTTCA 59.372 41.667 3.32 0.00 34.38 3.18
553 554 5.121142 CCGTCTAATTTTAGCCGAAGTTCAA 59.879 40.000 3.32 0.00 34.38 2.69
554 555 6.013689 CGTCTAATTTTAGCCGAAGTTCAAC 58.986 40.000 3.32 0.00 34.38 3.18
555 556 6.128634 CGTCTAATTTTAGCCGAAGTTCAACT 60.129 38.462 3.32 1.89 34.38 3.16
556 557 7.235080 GTCTAATTTTAGCCGAAGTTCAACTC 58.765 38.462 3.32 0.00 0.00 3.01
557 558 6.932400 TCTAATTTTAGCCGAAGTTCAACTCA 59.068 34.615 3.32 0.00 0.00 3.41
558 559 6.385649 AATTTTAGCCGAAGTTCAACTCAA 57.614 33.333 3.32 0.00 0.00 3.02
559 560 5.821516 TTTTAGCCGAAGTTCAACTCAAA 57.178 34.783 3.32 1.23 0.00 2.69
560 561 5.821516 TTTAGCCGAAGTTCAACTCAAAA 57.178 34.783 3.32 0.00 0.00 2.44
561 562 6.385649 TTTAGCCGAAGTTCAACTCAAAAT 57.614 33.333 3.32 0.00 0.00 1.82
562 563 4.489679 AGCCGAAGTTCAACTCAAAATC 57.510 40.909 3.32 0.00 0.00 2.17
563 564 3.058914 AGCCGAAGTTCAACTCAAAATCG 60.059 43.478 3.32 2.17 0.00 3.34
564 565 3.810373 CCGAAGTTCAACTCAAAATCGG 58.190 45.455 12.13 12.13 0.00 4.18
565 566 3.226347 CGAAGTTCAACTCAAAATCGGC 58.774 45.455 3.32 0.00 0.00 5.54
566 567 2.969443 AGTTCAACTCAAAATCGGCG 57.031 45.000 0.00 0.00 0.00 6.46
567 568 1.069227 AGTTCAACTCAAAATCGGCGC 60.069 47.619 0.00 0.00 0.00 6.53
568 569 0.239879 TTCAACTCAAAATCGGCGCC 59.760 50.000 19.07 19.07 0.00 6.53
569 570 0.605319 TCAACTCAAAATCGGCGCCT 60.605 50.000 26.68 2.78 0.00 5.52
570 571 0.454957 CAACTCAAAATCGGCGCCTG 60.455 55.000 26.68 18.23 0.00 4.85
571 572 1.586154 AACTCAAAATCGGCGCCTGG 61.586 55.000 26.68 10.37 0.00 4.45
572 573 2.749839 TCAAAATCGGCGCCTGGG 60.750 61.111 26.68 9.50 0.00 4.45
573 574 3.825611 CAAAATCGGCGCCTGGGG 61.826 66.667 26.68 9.07 0.00 4.96
614 615 4.796495 GAACCCGGCCGCTTCCAT 62.796 66.667 22.85 1.08 0.00 3.41
621 622 3.381136 GCCGCTTCCATGGCCAAA 61.381 61.111 10.96 0.00 45.73 3.28
622 623 2.941616 GCCGCTTCCATGGCCAAAA 61.942 57.895 10.96 3.70 45.73 2.44
623 624 1.899617 CCGCTTCCATGGCCAAAAT 59.100 52.632 10.96 0.00 0.00 1.82
624 625 1.110442 CCGCTTCCATGGCCAAAATA 58.890 50.000 10.96 0.00 0.00 1.40
625 626 1.067516 CCGCTTCCATGGCCAAAATAG 59.932 52.381 10.96 6.74 0.00 1.73
626 627 1.536709 CGCTTCCATGGCCAAAATAGC 60.537 52.381 10.96 15.90 0.00 2.97
627 628 1.536709 GCTTCCATGGCCAAAATAGCG 60.537 52.381 10.96 0.00 0.00 4.26
628 629 0.459489 TTCCATGGCCAAAATAGCGC 59.541 50.000 10.96 0.00 0.00 5.92
629 630 1.067916 CCATGGCCAAAATAGCGCC 59.932 57.895 10.96 0.00 43.32 6.53
630 631 1.299316 CATGGCCAAAATAGCGCCG 60.299 57.895 10.96 0.00 46.12 6.46
631 632 1.752694 ATGGCCAAAATAGCGCCGT 60.753 52.632 10.96 0.00 46.12 5.68
632 633 1.724582 ATGGCCAAAATAGCGCCGTC 61.725 55.000 10.96 0.00 46.12 4.79
633 634 2.112815 GGCCAAAATAGCGCCGTCT 61.113 57.895 2.29 0.00 31.92 4.18
634 635 0.812412 GGCCAAAATAGCGCCGTCTA 60.812 55.000 2.29 0.00 31.92 2.59
635 636 0.582005 GCCAAAATAGCGCCGTCTAG 59.418 55.000 2.29 0.00 0.00 2.43
636 637 0.582005 CCAAAATAGCGCCGTCTAGC 59.418 55.000 2.29 0.00 0.00 3.42
637 638 0.582005 CAAAATAGCGCCGTCTAGCC 59.418 55.000 2.29 0.00 0.00 3.93
638 639 0.532196 AAAATAGCGCCGTCTAGCCC 60.532 55.000 2.29 0.00 0.00 5.19
639 640 1.400530 AAATAGCGCCGTCTAGCCCT 61.401 55.000 2.29 0.00 0.00 5.19
640 641 1.807495 AATAGCGCCGTCTAGCCCTC 61.807 60.000 2.29 0.00 0.00 4.30
641 642 2.978298 ATAGCGCCGTCTAGCCCTCA 62.978 60.000 2.29 0.00 0.00 3.86
642 643 4.577246 GCGCCGTCTAGCCCTCAG 62.577 72.222 0.00 0.00 0.00 3.35
643 644 2.829003 CGCCGTCTAGCCCTCAGA 60.829 66.667 0.00 0.00 0.00 3.27
644 645 2.415608 CGCCGTCTAGCCCTCAGAA 61.416 63.158 0.00 0.00 0.00 3.02
645 646 1.439644 GCCGTCTAGCCCTCAGAAG 59.560 63.158 0.00 0.00 0.00 2.85
646 647 2.022240 GCCGTCTAGCCCTCAGAAGG 62.022 65.000 0.62 0.62 42.54 3.46
652 653 2.825264 GCCCTCAGAAGGCGCTAT 59.175 61.111 7.64 0.00 41.41 2.97
653 654 1.147153 GCCCTCAGAAGGCGCTATT 59.853 57.895 7.64 2.03 41.41 1.73
654 655 0.464554 GCCCTCAGAAGGCGCTATTT 60.465 55.000 7.64 0.00 41.41 1.40
655 656 1.587547 CCCTCAGAAGGCGCTATTTC 58.412 55.000 7.64 9.46 41.85 2.17
656 657 1.139853 CCCTCAGAAGGCGCTATTTCT 59.860 52.381 7.64 11.69 41.85 2.52
658 659 2.419297 CCTCAGAAGGCGCTATTTCTGT 60.419 50.000 30.14 10.64 46.50 3.41
659 660 2.863137 CTCAGAAGGCGCTATTTCTGTC 59.137 50.000 30.14 13.23 46.50 3.51
660 661 1.936547 CAGAAGGCGCTATTTCTGTCC 59.063 52.381 26.76 3.89 43.25 4.02
661 662 1.134371 AGAAGGCGCTATTTCTGTCCC 60.134 52.381 17.26 0.00 32.65 4.46
662 663 0.912486 AAGGCGCTATTTCTGTCCCT 59.088 50.000 7.64 0.00 0.00 4.20
663 664 0.179000 AGGCGCTATTTCTGTCCCTG 59.821 55.000 7.64 0.00 0.00 4.45
664 665 0.178068 GGCGCTATTTCTGTCCCTGA 59.822 55.000 7.64 0.00 0.00 3.86
665 666 1.576356 GCGCTATTTCTGTCCCTGAG 58.424 55.000 0.00 0.00 0.00 3.35
666 667 1.808133 GCGCTATTTCTGTCCCTGAGG 60.808 57.143 0.00 0.00 0.00 3.86
667 668 1.808133 CGCTATTTCTGTCCCTGAGGC 60.808 57.143 0.00 0.00 0.00 4.70
668 669 1.808133 GCTATTTCTGTCCCTGAGGCG 60.808 57.143 0.00 0.00 0.00 5.52
669 670 0.178068 TATTTCTGTCCCTGAGGCGC 59.822 55.000 0.00 0.00 0.00 6.53
670 671 2.543067 ATTTCTGTCCCTGAGGCGCC 62.543 60.000 21.89 21.89 0.00 6.53
686 687 2.892425 CCGAACGGCTGGAGATGC 60.892 66.667 0.00 0.00 0.00 3.91
687 688 2.185350 CGAACGGCTGGAGATGCT 59.815 61.111 0.00 0.00 0.00 3.79
688 689 1.880340 CGAACGGCTGGAGATGCTC 60.880 63.158 0.00 0.00 0.00 4.26
689 690 1.519719 GAACGGCTGGAGATGCTCT 59.480 57.895 0.00 0.00 0.00 4.09
690 691 0.107945 GAACGGCTGGAGATGCTCTT 60.108 55.000 0.00 0.00 0.00 2.85
691 692 1.137086 GAACGGCTGGAGATGCTCTTA 59.863 52.381 0.00 0.00 0.00 2.10
692 693 0.749649 ACGGCTGGAGATGCTCTTAG 59.250 55.000 0.00 0.00 0.00 2.18
693 694 0.033228 CGGCTGGAGATGCTCTTAGG 59.967 60.000 0.00 0.00 0.00 2.69
694 695 1.127343 GGCTGGAGATGCTCTTAGGT 58.873 55.000 0.00 0.00 0.00 3.08
695 696 1.488393 GGCTGGAGATGCTCTTAGGTT 59.512 52.381 0.00 0.00 0.00 3.50
696 697 2.484594 GGCTGGAGATGCTCTTAGGTTC 60.485 54.545 0.00 0.00 0.00 3.62
697 698 2.801342 GCTGGAGATGCTCTTAGGTTCG 60.801 54.545 0.00 0.00 0.00 3.95
698 699 1.757118 TGGAGATGCTCTTAGGTTCGG 59.243 52.381 0.00 0.00 0.00 4.30
699 700 2.032620 GGAGATGCTCTTAGGTTCGGA 58.967 52.381 0.00 0.00 0.00 4.55
700 701 2.431057 GGAGATGCTCTTAGGTTCGGAA 59.569 50.000 0.00 0.00 0.00 4.30
701 702 3.070302 GGAGATGCTCTTAGGTTCGGAAT 59.930 47.826 0.00 0.00 0.00 3.01
702 703 4.303282 GAGATGCTCTTAGGTTCGGAATC 58.697 47.826 0.00 0.00 0.00 2.52
703 704 3.964031 AGATGCTCTTAGGTTCGGAATCT 59.036 43.478 8.79 8.79 0.00 2.40
704 705 3.802948 TGCTCTTAGGTTCGGAATCTC 57.197 47.619 6.82 0.00 0.00 2.75
705 706 2.099263 TGCTCTTAGGTTCGGAATCTCG 59.901 50.000 6.82 0.52 0.00 4.04
706 707 2.358267 GCTCTTAGGTTCGGAATCTCGA 59.642 50.000 6.82 4.95 37.38 4.04
707 708 3.181489 GCTCTTAGGTTCGGAATCTCGAA 60.181 47.826 6.82 0.00 45.34 3.71
716 717 3.902150 TCGGAATCTCGAAGATGTATGC 58.098 45.455 0.00 0.00 34.65 3.14
717 718 3.317993 TCGGAATCTCGAAGATGTATGCA 59.682 43.478 0.00 0.00 34.65 3.96
718 719 3.426859 CGGAATCTCGAAGATGTATGCAC 59.573 47.826 0.00 0.00 34.65 4.57
719 720 3.743396 GGAATCTCGAAGATGTATGCACC 59.257 47.826 0.00 0.00 34.65 5.01
720 721 4.371786 GAATCTCGAAGATGTATGCACCA 58.628 43.478 0.00 0.00 34.65 4.17
721 722 3.443099 TCTCGAAGATGTATGCACCAG 57.557 47.619 0.00 0.00 33.89 4.00
722 723 2.760650 TCTCGAAGATGTATGCACCAGT 59.239 45.455 0.00 0.00 33.89 4.00
723 724 2.862536 CTCGAAGATGTATGCACCAGTG 59.137 50.000 0.00 0.00 33.89 3.66
724 725 1.935873 CGAAGATGTATGCACCAGTGG 59.064 52.381 7.91 7.91 0.00 4.00
725 726 2.418609 CGAAGATGTATGCACCAGTGGA 60.419 50.000 18.40 0.00 34.81 4.02
726 727 3.742327 CGAAGATGTATGCACCAGTGGAT 60.742 47.826 18.40 9.79 44.01 3.41
727 728 4.501400 CGAAGATGTATGCACCAGTGGATA 60.501 45.833 18.40 7.80 41.85 2.59
731 732 2.595124 TATGCACCAGTGGATACGTG 57.405 50.000 18.40 4.00 41.85 4.49
732 733 0.901827 ATGCACCAGTGGATACGTGA 59.098 50.000 18.40 0.00 39.92 4.35
733 734 0.682292 TGCACCAGTGGATACGTGAA 59.318 50.000 18.40 0.00 42.51 3.18
734 735 1.337728 TGCACCAGTGGATACGTGAAG 60.338 52.381 18.40 0.00 42.51 3.02
735 736 1.067142 GCACCAGTGGATACGTGAAGA 60.067 52.381 18.40 0.00 42.51 2.87
736 737 2.418746 GCACCAGTGGATACGTGAAGAT 60.419 50.000 18.40 0.00 42.51 2.40
737 738 3.190079 CACCAGTGGATACGTGAAGATG 58.810 50.000 18.40 0.00 42.51 2.90
738 739 2.168521 ACCAGTGGATACGTGAAGATGG 59.831 50.000 18.40 1.99 42.51 3.51
739 740 2.168521 CCAGTGGATACGTGAAGATGGT 59.831 50.000 1.68 0.00 42.51 3.55
740 741 3.448686 CAGTGGATACGTGAAGATGGTC 58.551 50.000 0.00 0.00 42.51 4.02
741 742 3.131223 CAGTGGATACGTGAAGATGGTCT 59.869 47.826 0.00 0.00 42.51 3.85
742 743 3.769844 AGTGGATACGTGAAGATGGTCTT 59.230 43.478 0.00 0.00 38.60 3.01
743 744 4.113354 GTGGATACGTGAAGATGGTCTTC 58.887 47.826 11.73 11.73 46.57 2.87
750 751 2.226602 GAAGATGGTCTTCGGGCTAC 57.773 55.000 4.16 0.00 42.78 3.58
751 752 0.460311 AAGATGGTCTTCGGGCTACG 59.540 55.000 0.00 0.00 46.11 3.51
752 753 0.683504 AGATGGTCTTCGGGCTACGT 60.684 55.000 0.00 0.00 44.69 3.57
753 754 1.027357 GATGGTCTTCGGGCTACGTA 58.973 55.000 0.00 0.00 44.69 3.57
754 755 0.743097 ATGGTCTTCGGGCTACGTAC 59.257 55.000 0.00 0.00 44.69 3.67
755 756 0.608856 TGGTCTTCGGGCTACGTACA 60.609 55.000 0.00 0.00 44.69 2.90
756 757 0.527565 GGTCTTCGGGCTACGTACAA 59.472 55.000 0.00 0.00 44.69 2.41
757 758 1.468736 GGTCTTCGGGCTACGTACAAG 60.469 57.143 0.00 0.00 44.69 3.16
949 952 2.433145 CACGCTGACGCACCATCT 60.433 61.111 0.00 0.00 45.53 2.90
950 953 1.153842 CACGCTGACGCACCATCTA 60.154 57.895 0.00 0.00 45.53 1.98
967 970 0.448990 CTATCGTTCCGTCACGTCCA 59.551 55.000 0.00 0.00 41.16 4.02
995 1000 0.917259 GAGTGCGCACTAGAACATCG 59.083 55.000 40.77 0.00 42.66 3.84
1047 1056 1.184322 AGCCATCGATCGAGCTCCAT 61.184 55.000 23.84 0.00 0.00 3.41
1086 1095 0.385598 GAACACCGCGCTTCTTTTCC 60.386 55.000 5.56 0.00 0.00 3.13
1269 1323 4.962836 CCCCCATGCCCGAGATGC 62.963 72.222 0.00 0.00 0.00 3.91
1270 1324 4.962836 CCCCATGCCCGAGATGCC 62.963 72.222 0.00 0.00 0.00 4.40
1271 1325 3.882326 CCCATGCCCGAGATGCCT 61.882 66.667 0.00 0.00 0.00 4.75
1272 1326 2.519622 CCCATGCCCGAGATGCCTA 61.520 63.158 0.00 0.00 0.00 3.93
1273 1327 1.302033 CCATGCCCGAGATGCCTAC 60.302 63.158 0.00 0.00 0.00 3.18
1274 1328 1.665916 CATGCCCGAGATGCCTACG 60.666 63.158 0.00 0.00 0.00 3.51
1275 1329 1.832608 ATGCCCGAGATGCCTACGA 60.833 57.895 0.00 0.00 0.00 3.43
1276 1330 1.188219 ATGCCCGAGATGCCTACGAT 61.188 55.000 0.00 0.00 0.00 3.73
1277 1331 1.367840 GCCCGAGATGCCTACGATT 59.632 57.895 0.00 0.00 0.00 3.34
1374 1428 6.560711 TGATACTCAGAATCGATCGTTTTCA 58.439 36.000 24.68 15.27 0.00 2.69
1375 1429 6.472486 TGATACTCAGAATCGATCGTTTTCAC 59.528 38.462 24.68 10.55 0.00 3.18
1425 1497 2.112198 CGTTGTGGTGTGCTGTGGT 61.112 57.895 0.00 0.00 0.00 4.16
1426 1498 1.433064 GTTGTGGTGTGCTGTGGTG 59.567 57.895 0.00 0.00 0.00 4.17
1433 1524 1.078778 TGTGCTGTGGTGTTCGTGT 60.079 52.632 0.00 0.00 0.00 4.49
1460 1551 7.857456 ACCTTATTGGATTGTGATACAGTGTA 58.143 34.615 5.24 5.24 39.71 2.90
1462 1553 7.226720 CCTTATTGGATTGTGATACAGTGTACC 59.773 40.741 4.80 0.00 38.35 3.34
1463 1554 4.118093 TGGATTGTGATACAGTGTACCG 57.882 45.455 4.80 0.00 0.00 4.02
1514 1605 4.689705 GCCCATTGAAATATCCAGGTCTCA 60.690 45.833 0.00 0.00 0.00 3.27
1549 4103 3.902881 TGCCCAACAAACTTTGATGTT 57.097 38.095 8.55 0.00 40.24 2.71
1555 4109 5.280945 CCAACAAACTTTGATGTTCGTCAT 58.719 37.500 8.55 0.00 37.66 3.06
1556 4110 6.434596 CCAACAAACTTTGATGTTCGTCATA 58.565 36.000 8.55 0.00 37.66 2.15
1557 4111 6.578545 CCAACAAACTTTGATGTTCGTCATAG 59.421 38.462 8.55 9.67 37.66 2.23
1558 4112 7.351981 CAACAAACTTTGATGTTCGTCATAGA 58.648 34.615 15.50 0.00 37.66 1.98
1559 4113 7.672983 ACAAACTTTGATGTTCGTCATAGAT 57.327 32.000 15.50 5.03 36.83 1.98
1560 4114 7.521529 ACAAACTTTGATGTTCGTCATAGATG 58.478 34.615 15.50 14.73 36.83 2.90
1561 4115 7.387673 ACAAACTTTGATGTTCGTCATAGATGA 59.612 33.333 15.50 0.00 36.83 2.92
1562 4116 7.905604 AACTTTGATGTTCGTCATAGATGAA 57.094 32.000 15.50 0.00 38.75 2.57
1568 4122 3.775661 TTCGTCATAGATGAACAGCGA 57.224 42.857 0.00 0.00 38.75 4.93
1569 4123 3.775661 TCGTCATAGATGAACAGCGAA 57.224 42.857 0.00 0.00 38.75 4.70
1570 4124 4.104696 TCGTCATAGATGAACAGCGAAA 57.895 40.909 0.00 0.00 38.75 3.46
1571 4125 4.682787 TCGTCATAGATGAACAGCGAAAT 58.317 39.130 0.00 0.00 38.75 2.17
1572 4126 5.827666 TCGTCATAGATGAACAGCGAAATA 58.172 37.500 0.00 0.00 38.75 1.40
1573 4127 6.270064 TCGTCATAGATGAACAGCGAAATAA 58.730 36.000 0.00 0.00 38.75 1.40
1574 4128 6.923508 TCGTCATAGATGAACAGCGAAATAAT 59.076 34.615 0.00 0.00 38.75 1.28
1575 4129 8.079809 TCGTCATAGATGAACAGCGAAATAATA 58.920 33.333 0.00 0.00 38.75 0.98
1576 4130 8.699749 CGTCATAGATGAACAGCGAAATAATAA 58.300 33.333 0.00 0.00 38.75 1.40
1577 4131 9.798885 GTCATAGATGAACAGCGAAATAATAAC 57.201 33.333 0.00 0.00 38.75 1.89
1578 4132 9.541143 TCATAGATGAACAGCGAAATAATAACA 57.459 29.630 0.00 0.00 33.08 2.41
1579 4133 9.803130 CATAGATGAACAGCGAAATAATAACAG 57.197 33.333 0.00 0.00 0.00 3.16
1580 4134 7.849804 AGATGAACAGCGAAATAATAACAGT 57.150 32.000 0.00 0.00 0.00 3.55
1581 4135 7.910304 AGATGAACAGCGAAATAATAACAGTC 58.090 34.615 0.00 0.00 0.00 3.51
1582 4136 7.766278 AGATGAACAGCGAAATAATAACAGTCT 59.234 33.333 0.00 0.00 0.00 3.24
1583 4137 7.290857 TGAACAGCGAAATAATAACAGTCTC 57.709 36.000 0.00 0.00 0.00 3.36
1584 4138 6.312918 TGAACAGCGAAATAATAACAGTCTCC 59.687 38.462 0.00 0.00 0.00 3.71
1585 4139 5.730550 ACAGCGAAATAATAACAGTCTCCA 58.269 37.500 0.00 0.00 0.00 3.86
1586 4140 6.170506 ACAGCGAAATAATAACAGTCTCCAA 58.829 36.000 0.00 0.00 0.00 3.53
1587 4141 6.313905 ACAGCGAAATAATAACAGTCTCCAAG 59.686 38.462 0.00 0.00 0.00 3.61
1588 4142 5.294552 AGCGAAATAATAACAGTCTCCAAGC 59.705 40.000 0.00 0.00 0.00 4.01
1589 4143 5.294552 GCGAAATAATAACAGTCTCCAAGCT 59.705 40.000 0.00 0.00 0.00 3.74
1590 4144 6.709643 CGAAATAATAACAGTCTCCAAGCTG 58.290 40.000 0.00 0.00 38.58 4.24
1591 4145 6.535150 CGAAATAATAACAGTCTCCAAGCTGA 59.465 38.462 0.00 0.00 36.62 4.26
1592 4146 7.254252 CGAAATAATAACAGTCTCCAAGCTGAG 60.254 40.741 0.00 0.00 36.62 3.35
1593 4147 4.899352 AATAACAGTCTCCAAGCTGAGT 57.101 40.909 1.35 0.00 36.62 3.41
1594 4148 2.829741 AACAGTCTCCAAGCTGAGTC 57.170 50.000 1.35 0.00 36.62 3.36
1595 4149 1.709578 ACAGTCTCCAAGCTGAGTCA 58.290 50.000 1.35 0.00 36.62 3.41
1596 4150 2.042464 ACAGTCTCCAAGCTGAGTCAA 58.958 47.619 0.00 0.00 36.62 3.18
1597 4151 2.036992 ACAGTCTCCAAGCTGAGTCAAG 59.963 50.000 0.00 0.00 36.62 3.02
1598 4152 2.298446 CAGTCTCCAAGCTGAGTCAAGA 59.702 50.000 0.00 0.00 34.87 3.02
1599 4153 2.298729 AGTCTCCAAGCTGAGTCAAGAC 59.701 50.000 11.00 11.00 33.93 3.01
1600 4154 2.036475 GTCTCCAAGCTGAGTCAAGACA 59.964 50.000 13.21 0.00 33.55 3.41
1601 4155 2.700371 TCTCCAAGCTGAGTCAAGACAA 59.300 45.455 2.72 0.00 33.93 3.18
1602 4156 3.065655 CTCCAAGCTGAGTCAAGACAAG 58.934 50.000 2.72 1.27 0.00 3.16
1603 4157 2.149578 CCAAGCTGAGTCAAGACAAGG 58.850 52.381 2.72 0.00 0.00 3.61
1604 4158 2.224378 CCAAGCTGAGTCAAGACAAGGA 60.224 50.000 2.72 0.00 0.00 3.36
1605 4159 3.065655 CAAGCTGAGTCAAGACAAGGAG 58.934 50.000 2.72 0.00 0.00 3.69
1606 4160 1.622811 AGCTGAGTCAAGACAAGGAGG 59.377 52.381 2.72 0.00 0.00 4.30
1607 4161 1.346068 GCTGAGTCAAGACAAGGAGGT 59.654 52.381 2.72 0.00 0.00 3.85
1608 4162 2.611722 GCTGAGTCAAGACAAGGAGGTC 60.612 54.545 2.72 0.00 38.08 3.85
1609 4163 1.613925 TGAGTCAAGACAAGGAGGTCG 59.386 52.381 2.72 0.00 42.62 4.79
1610 4164 1.887198 GAGTCAAGACAAGGAGGTCGA 59.113 52.381 2.72 0.00 42.62 4.20
1611 4165 2.494073 GAGTCAAGACAAGGAGGTCGAT 59.506 50.000 2.72 0.00 42.62 3.59
1612 4166 2.494073 AGTCAAGACAAGGAGGTCGATC 59.506 50.000 2.72 0.00 42.62 3.69
1613 4167 1.825474 TCAAGACAAGGAGGTCGATCC 59.175 52.381 0.00 0.00 42.62 3.36
1614 4168 1.134670 CAAGACAAGGAGGTCGATCCC 60.135 57.143 1.30 0.00 42.62 3.85
1615 4169 0.688087 AGACAAGGAGGTCGATCCCC 60.688 60.000 1.30 0.00 42.62 4.81
1616 4170 1.687297 GACAAGGAGGTCGATCCCCC 61.687 65.000 1.30 0.00 40.53 5.40
1617 4171 1.689233 CAAGGAGGTCGATCCCCCA 60.689 63.158 7.38 0.00 40.53 4.96
1618 4172 1.689582 AAGGAGGTCGATCCCCCAC 60.690 63.158 7.38 0.00 40.53 4.61
1639 4194 4.467084 CGTCGGTGTCCATGGGGG 62.467 72.222 13.02 0.00 38.37 5.40
1641 4196 3.006728 TCGGTGTCCATGGGGGTC 61.007 66.667 13.02 1.15 38.11 4.46
1643 4198 3.006728 GGTGTCCATGGGGGTCGA 61.007 66.667 13.02 0.00 38.11 4.20
1719 4274 2.444140 GAGCTTCTCCCGGGCCTA 60.444 66.667 18.49 0.00 0.00 3.93
1754 4309 1.300311 CACCTCGGTGTTGTACGCA 60.300 57.895 7.93 0.00 40.91 5.24
1894 4449 7.921214 TGATCCAGCACGTTAAAAACAATAAAA 59.079 29.630 0.00 0.00 0.00 1.52
1968 4523 1.311747 GACCCTAGGCTCCCACTCT 59.688 63.158 2.05 0.00 0.00 3.24
1991 4546 2.908940 GCTGTTGGTGGCTGCTGT 60.909 61.111 0.00 0.00 0.00 4.40
1997 4552 2.670934 GGTGGCTGCTGTGGAGTG 60.671 66.667 0.00 0.00 0.00 3.51
2001 4556 2.746359 GCTGCTGTGGAGTGGTCT 59.254 61.111 0.00 0.00 0.00 3.85
2096 4655 0.684479 GCAGGGGGTGGATTTCTTCC 60.684 60.000 0.00 0.00 45.69 3.46
2108 4667 1.853963 TTTCTTCCTCCTCCTCCTCG 58.146 55.000 0.00 0.00 0.00 4.63
2111 4670 1.077644 TTCCTCCTCCTCCTCGTCG 60.078 63.158 0.00 0.00 0.00 5.12
2182 4747 2.432628 CTTGCGACGGAGACCACC 60.433 66.667 0.00 0.00 0.00 4.61
2204 4769 4.111053 GTCCCCGGGGCCTTCTTC 62.111 72.222 36.68 14.02 34.68 2.87
2218 4783 3.760738 CCTTCTTCTTGGCCTTCTTCTT 58.239 45.455 3.32 0.00 0.00 2.52
2248 4813 1.847890 TAAGGCGCCGAAAACAGCAC 61.848 55.000 23.20 0.00 0.00 4.40
2283 4848 1.985116 GTCTCTGGGTCTTCGGGCT 60.985 63.158 0.00 0.00 0.00 5.19
2284 4849 0.683504 GTCTCTGGGTCTTCGGGCTA 60.684 60.000 0.00 0.00 0.00 3.93
2320 4885 5.770663 AGTTAATCTGCTCCGCTATCTCTAA 59.229 40.000 0.00 0.00 0.00 2.10
2339 4904 2.397044 ACCAGGCCTGAAAAATTGGA 57.603 45.000 34.91 0.00 0.00 3.53
2375 4941 1.347050 CCTCCCTCAGATATGCCAGTG 59.653 57.143 0.00 0.00 0.00 3.66
2401 4967 6.413783 GGATTTACCTTGAAAACTTGGGAA 57.586 37.500 0.00 0.00 35.41 3.97
2415 4982 3.317149 ACTTGGGAAAAAGAACTTACCGC 59.683 43.478 0.00 0.00 0.00 5.68
2424 4991 1.557832 AGAACTTACCGCATTAGCCCA 59.442 47.619 0.00 0.00 37.52 5.36
2456 5025 2.747460 CCACGGTCCTCGGTCGTA 60.747 66.667 6.74 0.00 44.45 3.43
2563 5132 2.656069 CCGGGTCGAACTCCCACAT 61.656 63.158 10.02 0.00 44.81 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.480133 GGGGTAGCACTCGGCCAT 61.480 66.667 2.24 0.00 46.50 4.40
7 8 4.509737 GTCGCCGGGGTAGCACTC 62.510 72.222 19.13 0.00 0.00 3.51
54 55 3.633094 CTCGTCCTCGTGCAGGTGG 62.633 68.421 19.00 19.00 43.95 4.61
55 56 2.126307 CTCGTCCTCGTGCAGGTG 60.126 66.667 6.26 3.77 43.95 4.00
56 57 3.374402 CCTCGTCCTCGTGCAGGT 61.374 66.667 6.26 0.00 43.95 4.00
57 58 4.803426 GCCTCGTCCTCGTGCAGG 62.803 72.222 0.00 0.00 45.15 4.85
58 59 4.803426 GGCCTCGTCCTCGTGCAG 62.803 72.222 0.00 0.00 37.53 4.41
60 61 4.803426 CAGGCCTCGTCCTCGTGC 62.803 72.222 0.00 0.00 38.33 5.34
61 62 4.803426 GCAGGCCTCGTCCTCGTG 62.803 72.222 0.00 0.00 38.33 4.35
72 73 2.056985 CTCATAGAGGAGGCAGGCC 58.943 63.158 0.97 0.97 0.00 5.19
93 94 4.603946 GGTGGCGCCGGATAGTCC 62.604 72.222 23.90 11.07 0.00 3.85
125 126 3.432051 CTAAGCCTCCACGAGCCCG 62.432 68.421 0.00 0.00 42.50 6.13
126 127 2.501610 CTAAGCCTCCACGAGCCC 59.498 66.667 0.00 0.00 0.00 5.19
127 128 2.202946 GCTAAGCCTCCACGAGCC 60.203 66.667 0.00 0.00 0.00 4.70
128 129 2.583593 CGCTAAGCCTCCACGAGC 60.584 66.667 0.00 0.00 0.00 5.03
129 130 2.583593 GCGCTAAGCCTCCACGAG 60.584 66.667 0.00 0.00 40.81 4.18
169 170 4.767255 GTCAGCACCAGAGGGCGG 62.767 72.222 0.00 0.00 37.90 6.13
170 171 4.767255 GGTCAGCACCAGAGGGCG 62.767 72.222 0.00 0.00 43.17 6.13
171 172 4.767255 CGGTCAGCACCAGAGGGC 62.767 72.222 0.00 0.00 44.02 5.19
172 173 4.087892 CCGGTCAGCACCAGAGGG 62.088 72.222 0.00 0.00 44.02 4.30
173 174 4.767255 GCCGGTCAGCACCAGAGG 62.767 72.222 1.90 0.00 44.02 3.69
191 192 3.774959 ATCCGCACGATCTCGGCAC 62.775 63.158 11.53 0.00 44.91 5.01
192 193 3.484742 GATCCGCACGATCTCGGCA 62.485 63.158 11.53 3.89 43.65 5.69
193 194 2.731348 GATCCGCACGATCTCGGC 60.731 66.667 11.53 4.10 43.65 5.54
194 195 2.049985 GGATCCGCACGATCTCGG 60.050 66.667 0.00 10.48 45.90 4.63
195 196 1.371022 CTGGATCCGCACGATCTCG 60.371 63.158 7.39 0.00 45.90 4.04
196 197 0.103208 AACTGGATCCGCACGATCTC 59.897 55.000 7.39 2.85 45.90 2.75
197 198 0.179100 CAACTGGATCCGCACGATCT 60.179 55.000 7.39 0.00 45.90 2.75
198 199 0.460284 ACAACTGGATCCGCACGATC 60.460 55.000 7.39 2.76 45.91 3.69
199 200 0.460284 GACAACTGGATCCGCACGAT 60.460 55.000 7.39 0.00 0.00 3.73
200 201 1.080093 GACAACTGGATCCGCACGA 60.080 57.895 7.39 0.00 0.00 4.35
201 202 2.444624 CGACAACTGGATCCGCACG 61.445 63.158 7.39 3.45 0.00 5.34
202 203 2.740714 GCGACAACTGGATCCGCAC 61.741 63.158 7.39 0.00 44.55 5.34
203 204 2.434185 GCGACAACTGGATCCGCA 60.434 61.111 7.39 0.00 44.55 5.69
204 205 2.125512 AGCGACAACTGGATCCGC 60.126 61.111 7.39 4.65 45.39 5.54
205 206 2.456119 GCAGCGACAACTGGATCCG 61.456 63.158 7.39 4.62 38.16 4.18
206 207 2.109126 GGCAGCGACAACTGGATCC 61.109 63.158 4.20 4.20 38.16 3.36
207 208 1.364626 CTGGCAGCGACAACTGGATC 61.365 60.000 0.00 0.00 38.16 3.36
208 209 1.376424 CTGGCAGCGACAACTGGAT 60.376 57.895 0.00 0.00 38.16 3.41
209 210 2.031012 CTGGCAGCGACAACTGGA 59.969 61.111 0.00 0.00 38.16 3.86
210 211 2.031012 TCTGGCAGCGACAACTGG 59.969 61.111 10.34 0.00 38.16 4.00
211 212 1.005748 TCTCTGGCAGCGACAACTG 60.006 57.895 10.34 0.00 40.80 3.16
212 213 1.291588 CTCTCTGGCAGCGACAACT 59.708 57.895 10.34 0.00 0.00 3.16
213 214 2.386660 GCTCTCTGGCAGCGACAAC 61.387 63.158 10.34 0.00 0.00 3.32
214 215 2.047844 GCTCTCTGGCAGCGACAA 60.048 61.111 10.34 0.00 0.00 3.18
236 237 2.728817 CGTACCTCGGCTGGATCC 59.271 66.667 4.20 4.20 35.71 3.36
237 238 2.027751 GCGTACCTCGGCTGGATC 59.972 66.667 0.00 0.00 40.26 3.36
246 247 3.148031 GATGTCGGGGGCGTACCTC 62.148 68.421 0.00 0.00 40.03 3.85
247 248 3.152400 GATGTCGGGGGCGTACCT 61.152 66.667 0.00 0.00 40.03 3.08
248 249 4.231439 GGATGTCGGGGGCGTACC 62.231 72.222 0.00 0.00 39.11 3.34
249 250 3.463585 TGGATGTCGGGGGCGTAC 61.464 66.667 0.00 0.00 0.00 3.67
250 251 3.463585 GTGGATGTCGGGGGCGTA 61.464 66.667 0.00 0.00 0.00 4.42
253 254 4.028490 TGTGTGGATGTCGGGGGC 62.028 66.667 0.00 0.00 0.00 5.80
254 255 1.261938 TAGTGTGTGGATGTCGGGGG 61.262 60.000 0.00 0.00 0.00 5.40
255 256 0.830648 ATAGTGTGTGGATGTCGGGG 59.169 55.000 0.00 0.00 0.00 5.73
256 257 1.473257 CCATAGTGTGTGGATGTCGGG 60.473 57.143 0.00 0.00 39.12 5.14
257 258 1.480545 TCCATAGTGTGTGGATGTCGG 59.519 52.381 0.00 0.00 40.72 4.79
258 259 2.540515 GTCCATAGTGTGTGGATGTCG 58.459 52.381 0.00 0.00 46.68 4.35
259 260 2.540515 CGTCCATAGTGTGTGGATGTC 58.459 52.381 6.27 0.00 46.68 3.06
260 261 1.207089 CCGTCCATAGTGTGTGGATGT 59.793 52.381 12.04 0.00 46.64 3.06
261 262 1.939974 CCGTCCATAGTGTGTGGATG 58.060 55.000 7.27 7.27 46.68 3.51
262 263 0.178068 GCCGTCCATAGTGTGTGGAT 59.822 55.000 0.00 0.00 46.68 3.41
263 264 1.594833 GCCGTCCATAGTGTGTGGA 59.405 57.895 0.00 0.00 43.26 4.02
264 265 1.809619 CGCCGTCCATAGTGTGTGG 60.810 63.158 0.00 0.00 38.11 4.17
265 266 0.171679 TACGCCGTCCATAGTGTGTG 59.828 55.000 0.00 0.00 0.00 3.82
266 267 0.454600 CTACGCCGTCCATAGTGTGT 59.545 55.000 0.00 0.00 0.00 3.72
267 268 0.454600 ACTACGCCGTCCATAGTGTG 59.545 55.000 0.00 0.00 0.00 3.82
268 269 1.133790 GAACTACGCCGTCCATAGTGT 59.866 52.381 0.00 0.00 0.00 3.55
269 270 1.836383 GAACTACGCCGTCCATAGTG 58.164 55.000 0.00 0.00 0.00 2.74
270 271 0.379669 CGAACTACGCCGTCCATAGT 59.620 55.000 0.00 0.00 34.51 2.12
271 272 0.659427 TCGAACTACGCCGTCCATAG 59.341 55.000 0.00 0.00 42.26 2.23
272 273 0.378257 GTCGAACTACGCCGTCCATA 59.622 55.000 0.00 0.00 42.26 2.74
273 274 1.138247 GTCGAACTACGCCGTCCAT 59.862 57.895 0.00 0.00 42.26 3.41
274 275 2.562912 GTCGAACTACGCCGTCCA 59.437 61.111 0.00 0.00 42.26 4.02
275 276 2.202531 GGTCGAACTACGCCGTCC 60.203 66.667 0.00 0.00 42.26 4.79
282 283 4.424566 TGGCGGCGGTCGAACTAC 62.425 66.667 6.02 0.00 42.43 2.73
283 284 4.424566 GTGGCGGCGGTCGAACTA 62.425 66.667 6.02 0.00 42.43 2.24
295 296 4.803426 GAGCTGGTCGGAGTGGCG 62.803 72.222 0.00 0.00 0.00 5.69
296 297 4.803426 CGAGCTGGTCGGAGTGGC 62.803 72.222 20.54 0.00 45.58 5.01
320 321 2.582498 GGGGATCGACGCTGTTCG 60.582 66.667 0.00 0.00 45.38 3.95
321 322 1.810030 GTGGGGATCGACGCTGTTC 60.810 63.158 0.00 0.00 0.00 3.18
322 323 2.264794 GTGGGGATCGACGCTGTT 59.735 61.111 0.00 0.00 0.00 3.16
323 324 4.129737 CGTGGGGATCGACGCTGT 62.130 66.667 0.00 0.00 38.19 4.40
324 325 4.873129 CCGTGGGGATCGACGCTG 62.873 72.222 0.00 0.00 42.45 5.18
326 327 4.867599 GTCCGTGGGGATCGACGC 62.868 72.222 0.00 0.00 46.14 5.19
327 328 4.547905 CGTCCGTGGGGATCGACG 62.548 72.222 4.56 4.56 46.14 5.12
328 329 4.867599 GCGTCCGTGGGGATCGAC 62.868 72.222 0.00 0.00 46.14 4.20
331 332 4.222847 GAGGCGTCCGTGGGGATC 62.223 72.222 0.00 0.00 46.14 3.36
335 336 3.934391 GAGTTGAGGCGTCCGTGGG 62.934 68.421 3.56 0.00 0.00 4.61
336 337 2.432628 GAGTTGAGGCGTCCGTGG 60.433 66.667 3.56 0.00 0.00 4.94
337 338 2.432628 GGAGTTGAGGCGTCCGTG 60.433 66.667 3.56 0.00 0.00 4.94
338 339 4.052229 CGGAGTTGAGGCGTCCGT 62.052 66.667 3.56 0.00 46.66 4.69
340 341 2.182030 CTCGGAGTTGAGGCGTCC 59.818 66.667 3.56 0.00 32.18 4.79
364 365 3.124921 GACGCCCCACCATTGACG 61.125 66.667 0.00 0.00 0.00 4.35
365 366 2.750237 GGACGCCCCACCATTGAC 60.750 66.667 0.00 0.00 34.14 3.18
388 389 3.423154 GACGGCTTTGAGGGTGCG 61.423 66.667 0.00 0.00 0.00 5.34
389 390 3.056328 GGACGGCTTTGAGGGTGC 61.056 66.667 0.00 0.00 0.00 5.01
390 391 1.376037 GAGGACGGCTTTGAGGGTG 60.376 63.158 0.00 0.00 0.00 4.61
391 392 2.943978 CGAGGACGGCTTTGAGGGT 61.944 63.158 0.00 0.00 35.72 4.34
392 393 2.125512 CGAGGACGGCTTTGAGGG 60.126 66.667 0.00 0.00 35.72 4.30
393 394 1.153745 CTCGAGGACGGCTTTGAGG 60.154 63.158 9.84 0.00 40.21 3.86
394 395 1.807573 GCTCGAGGACGGCTTTGAG 60.808 63.158 13.31 13.31 40.21 3.02
395 396 2.261671 GCTCGAGGACGGCTTTGA 59.738 61.111 15.58 0.00 40.21 2.69
396 397 2.048222 TGCTCGAGGACGGCTTTG 60.048 61.111 15.58 0.00 40.21 2.77
397 398 2.048127 GTGCTCGAGGACGGCTTT 60.048 61.111 21.67 0.00 40.21 3.51
398 399 2.564553 GATGTGCTCGAGGACGGCTT 62.565 60.000 28.58 15.29 39.39 4.35
399 400 3.069980 GATGTGCTCGAGGACGGCT 62.070 63.158 28.58 17.48 39.39 5.52
400 401 2.583593 GATGTGCTCGAGGACGGC 60.584 66.667 28.58 20.01 39.39 5.68
409 410 2.583593 GACGGCCTCGATGTGCTC 60.584 66.667 0.00 0.00 40.11 4.26
410 411 2.942796 TTGACGGCCTCGATGTGCT 61.943 57.895 0.00 0.00 40.11 4.40
411 412 2.434185 TTGACGGCCTCGATGTGC 60.434 61.111 0.00 0.00 40.11 4.57
412 413 1.078759 GAGTTGACGGCCTCGATGTG 61.079 60.000 0.00 0.00 40.11 3.21
413 414 1.215647 GAGTTGACGGCCTCGATGT 59.784 57.895 0.00 0.00 40.11 3.06
414 415 4.094684 GAGTTGACGGCCTCGATG 57.905 61.111 0.00 0.00 40.11 3.84
424 425 4.430423 CAAGCGCGGCGAGTTGAC 62.430 66.667 28.54 6.97 0.00 3.18
430 431 4.980805 AAACTCCAAGCGCGGCGA 62.981 61.111 28.54 3.13 0.00 5.54
431 432 4.741781 CAAACTCCAAGCGCGGCG 62.742 66.667 19.62 19.62 0.00 6.46
432 433 2.677573 AAACAAACTCCAAGCGCGGC 62.678 55.000 8.83 0.00 0.00 6.53
433 434 0.248866 AAAACAAACTCCAAGCGCGG 60.249 50.000 8.83 0.00 0.00 6.46
434 435 1.255084 CAAAAACAAACTCCAAGCGCG 59.745 47.619 0.00 0.00 0.00 6.86
435 436 2.267426 ACAAAAACAAACTCCAAGCGC 58.733 42.857 0.00 0.00 0.00 5.92
436 437 7.867445 ATATAACAAAAACAAACTCCAAGCG 57.133 32.000 0.00 0.00 0.00 4.68
475 476 9.509855 GCGGTTTTTCATTCATATTTGTACATA 57.490 29.630 0.00 0.00 0.00 2.29
476 477 7.491048 GGCGGTTTTTCATTCATATTTGTACAT 59.509 33.333 0.00 0.00 0.00 2.29
477 478 6.809196 GGCGGTTTTTCATTCATATTTGTACA 59.191 34.615 0.00 0.00 0.00 2.90
478 479 6.809196 TGGCGGTTTTTCATTCATATTTGTAC 59.191 34.615 0.00 0.00 0.00 2.90
479 480 6.925211 TGGCGGTTTTTCATTCATATTTGTA 58.075 32.000 0.00 0.00 0.00 2.41
480 481 5.788450 TGGCGGTTTTTCATTCATATTTGT 58.212 33.333 0.00 0.00 0.00 2.83
481 482 6.098679 TCTGGCGGTTTTTCATTCATATTTG 58.901 36.000 0.00 0.00 0.00 2.32
482 483 6.279513 TCTGGCGGTTTTTCATTCATATTT 57.720 33.333 0.00 0.00 0.00 1.40
483 484 5.913137 TCTGGCGGTTTTTCATTCATATT 57.087 34.783 0.00 0.00 0.00 1.28
484 485 7.765695 ATATCTGGCGGTTTTTCATTCATAT 57.234 32.000 0.00 0.00 0.00 1.78
485 486 7.581213 AATATCTGGCGGTTTTTCATTCATA 57.419 32.000 0.00 0.00 0.00 2.15
486 487 6.469782 AATATCTGGCGGTTTTTCATTCAT 57.530 33.333 0.00 0.00 0.00 2.57
487 488 5.913137 AATATCTGGCGGTTTTTCATTCA 57.087 34.783 0.00 0.00 0.00 2.57
488 489 5.915196 GCTAATATCTGGCGGTTTTTCATTC 59.085 40.000 0.00 0.00 0.00 2.67
489 490 5.221244 GGCTAATATCTGGCGGTTTTTCATT 60.221 40.000 0.00 0.00 0.00 2.57
490 491 4.278419 GGCTAATATCTGGCGGTTTTTCAT 59.722 41.667 0.00 0.00 0.00 2.57
491 492 3.630312 GGCTAATATCTGGCGGTTTTTCA 59.370 43.478 0.00 0.00 0.00 2.69
492 493 3.303791 CGGCTAATATCTGGCGGTTTTTC 60.304 47.826 13.50 0.00 46.17 2.29
493 494 2.616842 CGGCTAATATCTGGCGGTTTTT 59.383 45.455 13.50 0.00 46.17 1.94
494 495 2.218603 CGGCTAATATCTGGCGGTTTT 58.781 47.619 13.50 0.00 46.17 2.43
495 496 1.878953 CGGCTAATATCTGGCGGTTT 58.121 50.000 13.50 0.00 46.17 3.27
496 497 3.606886 CGGCTAATATCTGGCGGTT 57.393 52.632 13.50 0.00 46.17 4.44
500 501 2.554032 ACAAATGCGGCTAATATCTGGC 59.446 45.455 0.00 0.00 0.00 4.85
501 502 3.565482 ACACAAATGCGGCTAATATCTGG 59.435 43.478 0.00 0.00 0.00 3.86
502 503 4.512944 AGACACAAATGCGGCTAATATCTG 59.487 41.667 0.00 0.00 0.00 2.90
503 504 4.708177 AGACACAAATGCGGCTAATATCT 58.292 39.130 0.00 0.00 0.00 1.98
504 505 5.424121 AAGACACAAATGCGGCTAATATC 57.576 39.130 0.00 0.00 0.00 1.63
505 506 5.835113 AAAGACACAAATGCGGCTAATAT 57.165 34.783 0.00 0.00 0.00 1.28
506 507 5.392595 GGAAAAGACACAAATGCGGCTAATA 60.393 40.000 0.00 0.00 0.00 0.98
507 508 4.485163 GAAAAGACACAAATGCGGCTAAT 58.515 39.130 0.00 0.00 0.00 1.73
508 509 3.305064 GGAAAAGACACAAATGCGGCTAA 60.305 43.478 0.00 0.00 0.00 3.09
509 510 2.227865 GGAAAAGACACAAATGCGGCTA 59.772 45.455 0.00 0.00 0.00 3.93
510 511 1.000274 GGAAAAGACACAAATGCGGCT 60.000 47.619 0.00 0.00 0.00 5.52
511 512 1.418373 GGAAAAGACACAAATGCGGC 58.582 50.000 0.00 0.00 0.00 6.53
512 513 1.001815 ACGGAAAAGACACAAATGCGG 60.002 47.619 0.00 0.00 0.00 5.69
513 514 2.032030 AGACGGAAAAGACACAAATGCG 60.032 45.455 0.00 0.00 0.00 4.73
514 515 3.626028 AGACGGAAAAGACACAAATGC 57.374 42.857 0.00 0.00 0.00 3.56
515 516 8.574196 AAAATTAGACGGAAAAGACACAAATG 57.426 30.769 0.00 0.00 0.00 2.32
516 517 9.893305 CTAAAATTAGACGGAAAAGACACAAAT 57.107 29.630 0.00 0.00 32.47 2.32
517 518 7.858879 GCTAAAATTAGACGGAAAAGACACAAA 59.141 33.333 4.39 0.00 32.47 2.83
518 519 7.357303 GCTAAAATTAGACGGAAAAGACACAA 58.643 34.615 4.39 0.00 32.47 3.33
519 520 6.072893 GGCTAAAATTAGACGGAAAAGACACA 60.073 38.462 4.39 0.00 32.47 3.72
520 521 6.312487 GGCTAAAATTAGACGGAAAAGACAC 58.688 40.000 4.39 0.00 32.47 3.67
521 522 6.490566 GGCTAAAATTAGACGGAAAAGACA 57.509 37.500 4.39 0.00 32.47 3.41
531 532 7.095355 TGAGTTGAACTTCGGCTAAAATTAGAC 60.095 37.037 0.00 0.03 35.38 2.59
532 533 6.932400 TGAGTTGAACTTCGGCTAAAATTAGA 59.068 34.615 0.00 0.00 32.47 2.10
533 534 7.129109 TGAGTTGAACTTCGGCTAAAATTAG 57.871 36.000 0.00 0.00 0.00 1.73
534 535 7.499321 TTGAGTTGAACTTCGGCTAAAATTA 57.501 32.000 0.00 0.00 0.00 1.40
535 536 6.385649 TTGAGTTGAACTTCGGCTAAAATT 57.614 33.333 0.00 0.00 0.00 1.82
536 537 6.385649 TTTGAGTTGAACTTCGGCTAAAAT 57.614 33.333 0.00 0.00 0.00 1.82
537 538 5.821516 TTTGAGTTGAACTTCGGCTAAAA 57.178 34.783 0.00 0.00 0.00 1.52
538 539 5.821516 TTTTGAGTTGAACTTCGGCTAAA 57.178 34.783 0.00 0.00 0.00 1.85
539 540 5.333798 CGATTTTGAGTTGAACTTCGGCTAA 60.334 40.000 0.00 0.00 0.00 3.09
540 541 4.151689 CGATTTTGAGTTGAACTTCGGCTA 59.848 41.667 0.00 0.00 0.00 3.93
541 542 3.058914 CGATTTTGAGTTGAACTTCGGCT 60.059 43.478 0.00 0.00 0.00 5.52
542 543 3.226347 CGATTTTGAGTTGAACTTCGGC 58.774 45.455 0.00 0.00 0.00 5.54
543 544 3.810373 CCGATTTTGAGTTGAACTTCGG 58.190 45.455 17.64 17.64 38.91 4.30
544 545 3.226347 GCCGATTTTGAGTTGAACTTCG 58.774 45.455 8.85 8.85 0.00 3.79
545 546 3.226347 CGCCGATTTTGAGTTGAACTTC 58.774 45.455 0.00 0.00 0.00 3.01
546 547 2.604614 GCGCCGATTTTGAGTTGAACTT 60.605 45.455 0.00 0.00 0.00 2.66
547 548 1.069227 GCGCCGATTTTGAGTTGAACT 60.069 47.619 0.00 0.00 0.00 3.01
548 549 1.327507 GCGCCGATTTTGAGTTGAAC 58.672 50.000 0.00 0.00 0.00 3.18
549 550 0.239879 GGCGCCGATTTTGAGTTGAA 59.760 50.000 12.58 0.00 0.00 2.69
550 551 0.605319 AGGCGCCGATTTTGAGTTGA 60.605 50.000 23.20 0.00 0.00 3.18
551 552 0.454957 CAGGCGCCGATTTTGAGTTG 60.455 55.000 23.20 5.59 0.00 3.16
552 553 1.586154 CCAGGCGCCGATTTTGAGTT 61.586 55.000 23.20 0.00 0.00 3.01
553 554 2.040544 CCAGGCGCCGATTTTGAGT 61.041 57.895 23.20 0.00 0.00 3.41
554 555 2.764314 CCCAGGCGCCGATTTTGAG 61.764 63.158 23.20 0.00 0.00 3.02
555 556 2.749839 CCCAGGCGCCGATTTTGA 60.750 61.111 23.20 0.00 0.00 2.69
556 557 3.825611 CCCCAGGCGCCGATTTTG 61.826 66.667 23.20 13.64 0.00 2.44
605 606 1.067516 CTATTTTGGCCATGGAAGCGG 59.932 52.381 18.40 0.00 0.00 5.52
606 607 1.536709 GCTATTTTGGCCATGGAAGCG 60.537 52.381 18.40 0.00 0.00 4.68
607 608 1.536709 CGCTATTTTGGCCATGGAAGC 60.537 52.381 18.40 13.26 0.00 3.86
608 609 1.536709 GCGCTATTTTGGCCATGGAAG 60.537 52.381 18.40 3.57 0.00 3.46
609 610 0.459489 GCGCTATTTTGGCCATGGAA 59.541 50.000 18.40 2.21 0.00 3.53
610 611 1.391157 GGCGCTATTTTGGCCATGGA 61.391 55.000 18.40 0.00 46.13 3.41
611 612 1.067916 GGCGCTATTTTGGCCATGG 59.932 57.895 6.09 7.63 46.13 3.66
612 613 4.736165 GGCGCTATTTTGGCCATG 57.264 55.556 6.09 0.00 46.13 3.66
615 616 0.812412 TAGACGGCGCTATTTTGGCC 60.812 55.000 6.90 0.00 43.42 5.36
616 617 0.582005 CTAGACGGCGCTATTTTGGC 59.418 55.000 6.90 0.00 0.00 4.52
617 618 0.582005 GCTAGACGGCGCTATTTTGG 59.418 55.000 6.90 0.00 0.00 3.28
618 619 0.582005 GGCTAGACGGCGCTATTTTG 59.418 55.000 6.90 0.00 0.00 2.44
619 620 0.532196 GGGCTAGACGGCGCTATTTT 60.532 55.000 6.90 0.00 41.10 1.82
620 621 1.069258 GGGCTAGACGGCGCTATTT 59.931 57.895 6.90 0.00 41.10 1.40
621 622 2.735237 GGGCTAGACGGCGCTATT 59.265 61.111 6.90 0.00 41.10 1.73
625 626 4.577246 CTGAGGGCTAGACGGCGC 62.577 72.222 6.90 0.00 43.97 6.53
626 627 2.343163 CTTCTGAGGGCTAGACGGCG 62.343 65.000 4.80 4.80 39.52 6.46
627 628 1.439644 CTTCTGAGGGCTAGACGGC 59.560 63.158 0.00 0.00 37.49 5.68
628 629 2.022240 GCCTTCTGAGGGCTAGACGG 62.022 65.000 22.19 0.00 45.57 4.79
629 630 1.439644 GCCTTCTGAGGGCTAGACG 59.560 63.158 22.19 0.00 45.57 4.18
630 631 1.439644 CGCCTTCTGAGGGCTAGAC 59.560 63.158 25.65 0.00 46.73 2.59
631 632 2.427245 GCGCCTTCTGAGGGCTAGA 61.427 63.158 25.65 0.00 46.73 2.43
632 633 1.109920 TAGCGCCTTCTGAGGGCTAG 61.110 60.000 25.65 13.99 46.73 3.42
633 634 0.470080 ATAGCGCCTTCTGAGGGCTA 60.470 55.000 25.65 19.85 46.49 3.93
634 635 1.341156 AATAGCGCCTTCTGAGGGCT 61.341 55.000 25.65 18.51 46.73 5.19
635 636 0.464554 AAATAGCGCCTTCTGAGGGC 60.465 55.000 19.92 19.92 43.75 5.19
636 637 1.139853 AGAAATAGCGCCTTCTGAGGG 59.860 52.381 14.25 0.66 43.75 4.30
637 638 2.611225 AGAAATAGCGCCTTCTGAGG 57.389 50.000 14.25 0.00 46.50 3.86
641 642 1.134371 GGGACAGAAATAGCGCCTTCT 60.134 52.381 2.29 7.54 31.99 2.85
642 643 1.134371 AGGGACAGAAATAGCGCCTTC 60.134 52.381 2.29 4.95 0.00 3.46
643 644 0.912486 AGGGACAGAAATAGCGCCTT 59.088 50.000 2.29 0.00 0.00 4.35
644 645 0.179000 CAGGGACAGAAATAGCGCCT 59.821 55.000 2.29 0.00 0.00 5.52
645 646 0.178068 TCAGGGACAGAAATAGCGCC 59.822 55.000 2.29 0.00 0.00 6.53
646 647 1.576356 CTCAGGGACAGAAATAGCGC 58.424 55.000 0.00 0.00 0.00 5.92
647 648 1.808133 GCCTCAGGGACAGAAATAGCG 60.808 57.143 0.00 0.00 33.58 4.26
648 649 1.808133 CGCCTCAGGGACAGAAATAGC 60.808 57.143 0.00 0.00 33.58 2.97
649 650 1.808133 GCGCCTCAGGGACAGAAATAG 60.808 57.143 0.00 0.00 33.58 1.73
650 651 0.178068 GCGCCTCAGGGACAGAAATA 59.822 55.000 0.00 0.00 33.58 1.40
651 652 1.078143 GCGCCTCAGGGACAGAAAT 60.078 57.895 0.00 0.00 33.58 2.17
652 653 2.347490 GCGCCTCAGGGACAGAAA 59.653 61.111 0.00 0.00 33.58 2.52
653 654 3.706373 GGCGCCTCAGGGACAGAA 61.706 66.667 22.15 0.00 33.05 3.02
669 670 2.892425 GCATCTCCAGCCGTTCGG 60.892 66.667 6.90 6.90 0.00 4.30
670 671 1.880340 GAGCATCTCCAGCCGTTCG 60.880 63.158 0.00 0.00 0.00 3.95
671 672 4.116878 GAGCATCTCCAGCCGTTC 57.883 61.111 0.00 0.00 0.00 3.95
682 683 4.303282 GAGATTCCGAACCTAAGAGCATC 58.697 47.826 0.00 0.00 0.00 3.91
683 684 3.243569 CGAGATTCCGAACCTAAGAGCAT 60.244 47.826 0.00 0.00 0.00 3.79
684 685 2.099263 CGAGATTCCGAACCTAAGAGCA 59.901 50.000 0.00 0.00 0.00 4.26
685 686 2.358267 TCGAGATTCCGAACCTAAGAGC 59.642 50.000 0.00 0.00 35.42 4.09
686 687 4.335874 TCTTCGAGATTCCGAACCTAAGAG 59.664 45.833 6.06 0.00 42.74 2.85
687 688 4.267536 TCTTCGAGATTCCGAACCTAAGA 58.732 43.478 6.06 0.00 42.74 2.10
688 689 4.634184 TCTTCGAGATTCCGAACCTAAG 57.366 45.455 6.06 0.00 42.74 2.18
689 690 4.401519 ACATCTTCGAGATTCCGAACCTAA 59.598 41.667 6.06 0.00 42.74 2.69
690 691 3.952323 ACATCTTCGAGATTCCGAACCTA 59.048 43.478 6.06 0.00 42.74 3.08
691 692 2.761208 ACATCTTCGAGATTCCGAACCT 59.239 45.455 6.06 0.00 42.74 3.50
692 693 3.166489 ACATCTTCGAGATTCCGAACC 57.834 47.619 6.06 0.00 42.74 3.62
693 694 4.149046 GCATACATCTTCGAGATTCCGAAC 59.851 45.833 6.06 0.00 42.74 3.95
694 695 4.202111 TGCATACATCTTCGAGATTCCGAA 60.202 41.667 8.85 8.85 45.01 4.30
695 696 3.317993 TGCATACATCTTCGAGATTCCGA 59.682 43.478 0.00 0.00 31.32 4.55
696 697 3.426859 GTGCATACATCTTCGAGATTCCG 59.573 47.826 0.00 0.00 31.32 4.30
697 698 3.743396 GGTGCATACATCTTCGAGATTCC 59.257 47.826 0.00 0.00 31.32 3.01
698 699 4.371786 TGGTGCATACATCTTCGAGATTC 58.628 43.478 0.00 0.00 31.32 2.52
699 700 4.141846 ACTGGTGCATACATCTTCGAGATT 60.142 41.667 0.00 0.00 31.32 2.40
700 701 3.386078 ACTGGTGCATACATCTTCGAGAT 59.614 43.478 0.00 0.00 34.74 2.75
701 702 2.760650 ACTGGTGCATACATCTTCGAGA 59.239 45.455 0.00 0.00 0.00 4.04
702 703 2.862536 CACTGGTGCATACATCTTCGAG 59.137 50.000 0.00 0.00 0.00 4.04
703 704 2.418609 CCACTGGTGCATACATCTTCGA 60.419 50.000 0.00 0.00 0.00 3.71
704 705 1.935873 CCACTGGTGCATACATCTTCG 59.064 52.381 0.00 0.00 0.00 3.79
705 706 3.266510 TCCACTGGTGCATACATCTTC 57.733 47.619 0.00 0.00 0.00 2.87
706 707 3.939740 ATCCACTGGTGCATACATCTT 57.060 42.857 0.00 0.00 0.00 2.40
707 708 3.243873 CGTATCCACTGGTGCATACATCT 60.244 47.826 13.17 0.00 0.00 2.90
708 709 3.059884 CGTATCCACTGGTGCATACATC 58.940 50.000 13.17 0.00 0.00 3.06
709 710 2.434336 ACGTATCCACTGGTGCATACAT 59.566 45.455 13.17 0.00 0.00 2.29
710 711 1.828595 ACGTATCCACTGGTGCATACA 59.171 47.619 13.17 0.00 0.00 2.29
711 712 2.159156 TCACGTATCCACTGGTGCATAC 60.159 50.000 5.09 5.09 0.00 2.39
712 713 2.104170 TCACGTATCCACTGGTGCATA 58.896 47.619 0.00 0.00 0.00 3.14
713 714 0.901827 TCACGTATCCACTGGTGCAT 59.098 50.000 0.00 0.00 0.00 3.96
714 715 0.682292 TTCACGTATCCACTGGTGCA 59.318 50.000 0.00 0.00 0.00 4.57
715 716 1.067142 TCTTCACGTATCCACTGGTGC 60.067 52.381 0.00 0.00 0.00 5.01
716 717 3.190079 CATCTTCACGTATCCACTGGTG 58.810 50.000 0.00 0.00 0.00 4.17
717 718 2.168521 CCATCTTCACGTATCCACTGGT 59.831 50.000 0.00 0.00 0.00 4.00
718 719 2.168521 ACCATCTTCACGTATCCACTGG 59.831 50.000 0.00 0.00 0.00 4.00
719 720 3.131223 AGACCATCTTCACGTATCCACTG 59.869 47.826 0.00 0.00 0.00 3.66
720 721 3.366396 AGACCATCTTCACGTATCCACT 58.634 45.455 0.00 0.00 0.00 4.00
721 722 3.802948 AGACCATCTTCACGTATCCAC 57.197 47.619 0.00 0.00 0.00 4.02
732 733 0.460311 CGTAGCCCGAAGACCATCTT 59.540 55.000 0.00 0.00 39.87 2.40
733 734 0.683504 ACGTAGCCCGAAGACCATCT 60.684 55.000 0.00 0.00 40.70 2.90
734 735 1.027357 TACGTAGCCCGAAGACCATC 58.973 55.000 0.00 0.00 40.70 3.51
735 736 0.743097 GTACGTAGCCCGAAGACCAT 59.257 55.000 0.00 0.00 40.70 3.55
736 737 0.608856 TGTACGTAGCCCGAAGACCA 60.609 55.000 0.00 0.00 40.70 4.02
737 738 0.527565 TTGTACGTAGCCCGAAGACC 59.472 55.000 0.00 0.00 40.70 3.85
738 739 1.470098 TCTTGTACGTAGCCCGAAGAC 59.530 52.381 0.00 0.00 40.70 3.01
739 740 1.825090 TCTTGTACGTAGCCCGAAGA 58.175 50.000 0.00 0.00 40.70 2.87
740 741 2.642139 TTCTTGTACGTAGCCCGAAG 57.358 50.000 0.00 0.00 40.70 3.79
741 742 3.383620 TTTTCTTGTACGTAGCCCGAA 57.616 42.857 0.00 0.00 40.70 4.30
742 743 3.056678 TCATTTTCTTGTACGTAGCCCGA 60.057 43.478 0.00 0.00 40.70 5.14
743 744 3.255725 TCATTTTCTTGTACGTAGCCCG 58.744 45.455 0.00 0.00 44.03 6.13
744 745 4.035208 CCATCATTTTCTTGTACGTAGCCC 59.965 45.833 0.00 0.00 0.00 5.19
745 746 4.634443 ACCATCATTTTCTTGTACGTAGCC 59.366 41.667 0.00 0.00 0.00 3.93
746 747 5.796350 ACCATCATTTTCTTGTACGTAGC 57.204 39.130 0.00 0.00 0.00 3.58
747 748 6.090358 ACGAACCATCATTTTCTTGTACGTAG 59.910 38.462 0.00 0.00 0.00 3.51
748 749 5.927689 ACGAACCATCATTTTCTTGTACGTA 59.072 36.000 0.00 0.00 0.00 3.57
749 750 4.753107 ACGAACCATCATTTTCTTGTACGT 59.247 37.500 0.00 0.00 0.00 3.57
750 751 5.277601 ACGAACCATCATTTTCTTGTACG 57.722 39.130 0.00 0.00 0.00 3.67
751 752 6.577427 GTGAACGAACCATCATTTTCTTGTAC 59.423 38.462 0.00 0.00 0.00 2.90
752 753 6.293735 GGTGAACGAACCATCATTTTCTTGTA 60.294 38.462 0.00 0.00 40.22 2.41
753 754 5.507315 GGTGAACGAACCATCATTTTCTTGT 60.507 40.000 0.00 0.00 40.22 3.16
754 755 4.917415 GGTGAACGAACCATCATTTTCTTG 59.083 41.667 0.00 0.00 40.22 3.02
755 756 5.121221 GGTGAACGAACCATCATTTTCTT 57.879 39.130 0.00 0.00 40.22 2.52
756 757 4.766404 GGTGAACGAACCATCATTTTCT 57.234 40.909 0.00 0.00 40.22 2.52
782 783 1.459592 GAAAACTGACGGGTGATCACG 59.540 52.381 19.33 11.71 46.92 4.35
826 827 1.395826 TTTGGGAGGTTTTGGCGTGG 61.396 55.000 0.00 0.00 0.00 4.94
868 871 1.447838 CGGTTGGTGATCCGTCTGG 60.448 63.158 0.00 0.00 41.58 3.86
916 919 3.742882 CAGCGTGAGATTTCTGTTTCAGA 59.257 43.478 0.00 0.00 38.87 3.27
920 923 2.476619 CGTCAGCGTGAGATTTCTGTTT 59.523 45.455 0.00 0.00 0.00 2.83
995 1000 3.425892 GCTTGTGTTGATCTCTGTGATGC 60.426 47.826 0.00 0.00 35.14 3.91
1047 1056 0.111446 TTGGAGGAAACCATGCCGAA 59.889 50.000 0.00 0.00 39.82 4.30
1253 1307 4.962836 GGCATCTCGGGCATGGGG 62.963 72.222 0.00 0.00 0.00 4.96
1263 1317 0.038159 CCGGGAATCGTAGGCATCTC 60.038 60.000 0.00 0.00 37.11 2.75
1264 1318 1.472662 CCCGGGAATCGTAGGCATCT 61.473 60.000 18.48 0.00 37.11 2.90
1265 1319 1.004918 CCCGGGAATCGTAGGCATC 60.005 63.158 18.48 0.00 37.11 3.91
1266 1320 1.342672 AACCCGGGAATCGTAGGCAT 61.343 55.000 32.02 0.00 37.11 4.40
1267 1321 1.963464 GAACCCGGGAATCGTAGGCA 61.963 60.000 32.02 0.00 37.11 4.75
1268 1322 1.227468 GAACCCGGGAATCGTAGGC 60.227 63.158 32.02 0.86 37.11 3.93
1269 1323 0.104304 CTGAACCCGGGAATCGTAGG 59.896 60.000 32.02 12.05 37.11 3.18
1270 1324 0.529992 GCTGAACCCGGGAATCGTAG 60.530 60.000 32.02 18.67 37.11 3.51
1271 1325 0.974010 AGCTGAACCCGGGAATCGTA 60.974 55.000 32.02 9.08 37.11 3.43
1272 1326 1.838073 AAGCTGAACCCGGGAATCGT 61.838 55.000 32.02 10.67 37.11 3.73
1273 1327 0.676782 AAAGCTGAACCCGGGAATCG 60.677 55.000 32.02 19.83 38.88 3.34
1274 1328 1.095600 GAAAGCTGAACCCGGGAATC 58.904 55.000 32.02 24.59 0.00 2.52
1275 1329 0.323451 GGAAAGCTGAACCCGGGAAT 60.323 55.000 32.02 16.47 0.00 3.01
1276 1330 1.074248 GGAAAGCTGAACCCGGGAA 59.926 57.895 32.02 11.61 0.00 3.97
1277 1331 2.754375 GGAAAGCTGAACCCGGGA 59.246 61.111 32.02 3.04 0.00 5.14
1374 1428 1.686325 AAGGACGGCACACACTCTGT 61.686 55.000 0.00 0.00 0.00 3.41
1375 1429 1.069765 AAGGACGGCACACACTCTG 59.930 57.895 0.00 0.00 0.00 3.35
1425 1497 3.755112 TCCAATAAGGTCACACGAACA 57.245 42.857 0.00 0.00 39.02 3.18
1426 1498 4.454504 ACAATCCAATAAGGTCACACGAAC 59.545 41.667 0.00 0.00 39.02 3.95
1433 1524 6.823182 CACTGTATCACAATCCAATAAGGTCA 59.177 38.462 0.00 0.00 39.02 4.02
1460 1551 3.988934 TGCACAACACACAACGGT 58.011 50.000 0.00 0.00 0.00 4.83
1549 4103 3.775661 TTCGCTGTTCATCTATGACGA 57.224 42.857 0.00 0.00 36.36 4.20
1555 4109 8.942338 ACTGTTATTATTTCGCTGTTCATCTA 57.058 30.769 0.00 0.00 0.00 1.98
1556 4110 7.766278 AGACTGTTATTATTTCGCTGTTCATCT 59.234 33.333 0.00 0.00 0.00 2.90
1557 4111 7.910304 AGACTGTTATTATTTCGCTGTTCATC 58.090 34.615 0.00 0.00 0.00 2.92
1558 4112 7.011482 GGAGACTGTTATTATTTCGCTGTTCAT 59.989 37.037 0.00 0.00 0.00 2.57
1559 4113 6.312918 GGAGACTGTTATTATTTCGCTGTTCA 59.687 38.462 0.00 0.00 0.00 3.18
1560 4114 6.312918 TGGAGACTGTTATTATTTCGCTGTTC 59.687 38.462 0.00 0.00 0.00 3.18
1561 4115 6.170506 TGGAGACTGTTATTATTTCGCTGTT 58.829 36.000 0.00 0.00 0.00 3.16
1562 4116 5.730550 TGGAGACTGTTATTATTTCGCTGT 58.269 37.500 0.00 0.00 0.00 4.40
1563 4117 6.662414 TTGGAGACTGTTATTATTTCGCTG 57.338 37.500 0.00 0.00 0.00 5.18
1564 4118 5.294552 GCTTGGAGACTGTTATTATTTCGCT 59.705 40.000 0.00 0.00 0.00 4.93
1565 4119 5.294552 AGCTTGGAGACTGTTATTATTTCGC 59.705 40.000 0.00 0.00 0.00 4.70
1566 4120 6.535150 TCAGCTTGGAGACTGTTATTATTTCG 59.465 38.462 0.00 0.00 35.37 3.46
1567 4121 7.550906 ACTCAGCTTGGAGACTGTTATTATTTC 59.449 37.037 8.00 0.00 38.30 2.17
1568 4122 7.398024 ACTCAGCTTGGAGACTGTTATTATTT 58.602 34.615 8.00 0.00 38.30 1.40
1569 4123 6.951971 ACTCAGCTTGGAGACTGTTATTATT 58.048 36.000 8.00 0.00 38.30 1.40
1570 4124 6.155221 TGACTCAGCTTGGAGACTGTTATTAT 59.845 38.462 8.00 0.00 38.30 1.28
1571 4125 5.480422 TGACTCAGCTTGGAGACTGTTATTA 59.520 40.000 8.00 0.00 38.30 0.98
1572 4126 4.284490 TGACTCAGCTTGGAGACTGTTATT 59.716 41.667 8.00 0.00 38.30 1.40
1573 4127 3.834813 TGACTCAGCTTGGAGACTGTTAT 59.165 43.478 8.00 0.00 38.30 1.89
1574 4128 3.230976 TGACTCAGCTTGGAGACTGTTA 58.769 45.455 8.00 0.00 38.30 2.41
1575 4129 2.042464 TGACTCAGCTTGGAGACTGTT 58.958 47.619 8.00 0.00 38.30 3.16
1576 4130 1.709578 TGACTCAGCTTGGAGACTGT 58.290 50.000 8.00 0.00 38.30 3.55
1577 4131 2.298446 TCTTGACTCAGCTTGGAGACTG 59.702 50.000 8.00 1.02 38.30 3.51
1578 4132 2.298729 GTCTTGACTCAGCTTGGAGACT 59.701 50.000 8.00 0.00 38.30 3.24
1579 4133 2.036475 TGTCTTGACTCAGCTTGGAGAC 59.964 50.000 8.00 2.73 38.30 3.36
1580 4134 2.319844 TGTCTTGACTCAGCTTGGAGA 58.680 47.619 8.00 0.00 38.30 3.71
1581 4135 2.827800 TGTCTTGACTCAGCTTGGAG 57.172 50.000 0.00 0.00 40.79 3.86
1582 4136 2.224378 CCTTGTCTTGACTCAGCTTGGA 60.224 50.000 2.35 0.00 0.00 3.53
1583 4137 2.149578 CCTTGTCTTGACTCAGCTTGG 58.850 52.381 2.35 0.00 0.00 3.61
1584 4138 3.065655 CTCCTTGTCTTGACTCAGCTTG 58.934 50.000 2.35 0.00 0.00 4.01
1585 4139 2.038295 CCTCCTTGTCTTGACTCAGCTT 59.962 50.000 2.35 0.00 0.00 3.74
1586 4140 1.622811 CCTCCTTGTCTTGACTCAGCT 59.377 52.381 2.35 0.00 0.00 4.24
1587 4141 1.346068 ACCTCCTTGTCTTGACTCAGC 59.654 52.381 2.35 0.00 0.00 4.26
1588 4142 2.352225 CGACCTCCTTGTCTTGACTCAG 60.352 54.545 2.35 0.00 32.97 3.35
1589 4143 1.613925 CGACCTCCTTGTCTTGACTCA 59.386 52.381 2.35 0.00 32.97 3.41
1590 4144 1.887198 TCGACCTCCTTGTCTTGACTC 59.113 52.381 2.35 0.00 32.97 3.36
1591 4145 1.996798 TCGACCTCCTTGTCTTGACT 58.003 50.000 2.35 0.00 32.97 3.41
1592 4146 2.417515 GGATCGACCTCCTTGTCTTGAC 60.418 54.545 0.00 0.00 35.41 3.18
1593 4147 1.825474 GGATCGACCTCCTTGTCTTGA 59.175 52.381 0.00 0.00 35.41 3.02
1594 4148 1.134670 GGGATCGACCTCCTTGTCTTG 60.135 57.143 5.09 0.00 38.98 3.02
1595 4149 1.196012 GGGATCGACCTCCTTGTCTT 58.804 55.000 5.09 0.00 38.98 3.01
1596 4150 0.688087 GGGGATCGACCTCCTTGTCT 60.688 60.000 5.09 0.00 38.98 3.41
1597 4151 1.823976 GGGGATCGACCTCCTTGTC 59.176 63.158 5.09 0.00 38.98 3.18
1598 4152 4.051932 GGGGATCGACCTCCTTGT 57.948 61.111 5.09 0.00 38.98 3.16
1603 4157 1.759459 GATGGTGGGGGATCGACCTC 61.759 65.000 5.97 0.00 43.63 3.85
1604 4158 1.766461 GATGGTGGGGGATCGACCT 60.766 63.158 5.97 0.00 43.63 3.85
1605 4159 2.829592 GATGGTGGGGGATCGACC 59.170 66.667 0.00 0.00 43.56 4.79
1606 4160 2.365095 GACGATGGTGGGGGATCGAC 62.365 65.000 8.28 0.00 43.36 4.20
1607 4161 2.042333 ACGATGGTGGGGGATCGA 60.042 61.111 8.28 0.00 43.36 3.59
1608 4162 2.421739 GACGATGGTGGGGGATCG 59.578 66.667 0.00 0.00 45.58 3.69
1609 4163 2.421739 CGACGATGGTGGGGGATC 59.578 66.667 0.00 0.00 0.00 3.36
1610 4164 3.161450 CCGACGATGGTGGGGGAT 61.161 66.667 0.66 0.00 38.30 3.85
1611 4165 4.707768 ACCGACGATGGTGGGGGA 62.708 66.667 13.29 0.00 45.53 4.81
1617 4171 1.218047 CATGGACACCGACGATGGT 59.782 57.895 0.00 0.00 45.21 3.55
1618 4172 1.521457 CCATGGACACCGACGATGG 60.521 63.158 5.56 0.00 37.31 3.51
1639 4194 2.183555 GACACGTGGGGGATCGAC 59.816 66.667 21.57 0.00 0.00 4.20
1641 4196 4.508128 CGGACACGTGGGGGATCG 62.508 72.222 21.57 9.87 34.81 3.69
1643 4198 3.605412 TACCGGACACGTGGGGGAT 62.605 63.158 21.57 10.36 38.78 3.85
1719 4274 2.982488 AGGTGTTGTCTTGAAGGATCCT 59.018 45.455 9.02 9.02 0.00 3.24
1774 4329 1.165270 GAACAACACATCCCTTCCGG 58.835 55.000 0.00 0.00 0.00 5.14
1832 4387 1.404181 GCTCAGTCCAACATCACGCTA 60.404 52.381 0.00 0.00 0.00 4.26
1904 4459 5.141910 TGTCTGGACACGGTAATATATCCA 58.858 41.667 0.00 0.00 36.21 3.41
1986 4541 1.895798 CTTCTAGACCACTCCACAGCA 59.104 52.381 0.00 0.00 0.00 4.41
1991 4546 2.111972 ACTTCCCTTCTAGACCACTCCA 59.888 50.000 0.00 0.00 0.00 3.86
2019 4574 2.358247 GCCGAGGCGTCCAAGAAA 60.358 61.111 0.00 0.00 0.00 2.52
2040 4595 4.066139 AAGGCCTCCACCCATGGC 62.066 66.667 5.23 0.00 46.80 4.40
2096 4655 0.889306 AAAACGACGAGGAGGAGGAG 59.111 55.000 0.00 0.00 0.00 3.69
2108 4667 1.076332 CCTCCACCATCGAAAACGAC 58.924 55.000 0.00 0.00 0.00 4.34
2111 4670 0.608035 TGCCCTCCACCATCGAAAAC 60.608 55.000 0.00 0.00 0.00 2.43
2118 4683 2.446848 CCGAGATGCCCTCCACCAT 61.447 63.158 0.00 0.00 38.71 3.55
2122 4687 2.284625 ACACCGAGATGCCCTCCA 60.285 61.111 0.00 0.00 38.71 3.86
2204 4769 2.175236 GCCGAAGAAGAAGGCCAAG 58.825 57.895 5.01 0.00 44.80 3.61
2218 4783 2.499205 CGCCTTATGAGGTGCCGA 59.501 61.111 3.88 0.00 45.89 5.54
2248 4813 0.456995 GACGCCTCTTCTGACGAAGG 60.457 60.000 0.00 0.00 45.36 3.46
2267 4832 1.817209 GTAGCCCGAAGACCCAGAG 59.183 63.158 0.00 0.00 0.00 3.35
2283 4848 1.406539 GATTAACTGTCCGGCTCCGTA 59.593 52.381 7.59 0.00 37.81 4.02
2284 4849 0.175073 GATTAACTGTCCGGCTCCGT 59.825 55.000 7.59 0.00 37.81 4.69
2320 4885 2.397044 TCCAATTTTTCAGGCCTGGT 57.603 45.000 32.23 10.91 0.00 4.00
2395 4961 3.288964 TGCGGTAAGTTCTTTTTCCCAA 58.711 40.909 0.00 0.00 0.00 4.12
2398 4964 5.093457 GCTAATGCGGTAAGTTCTTTTTCC 58.907 41.667 0.00 0.00 0.00 3.13
2399 4965 5.093457 GGCTAATGCGGTAAGTTCTTTTTC 58.907 41.667 0.00 0.00 40.82 2.29
2400 4966 4.082408 GGGCTAATGCGGTAAGTTCTTTTT 60.082 41.667 0.00 0.00 40.82 1.94
2401 4967 3.442625 GGGCTAATGCGGTAAGTTCTTTT 59.557 43.478 0.00 0.00 40.82 2.27
2415 4982 4.439289 GCTTAGCTCAAAACTGGGCTAATG 60.439 45.833 17.39 13.03 43.33 1.90
2424 4991 1.523758 CGTGGGCTTAGCTCAAAACT 58.476 50.000 8.93 0.00 42.30 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.