Multiple sequence alignment - TraesCS2B01G203400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G203400 chr2B 100.000 3173 0 0 1 3173 183128194 183131366 0.000000e+00 5860.0
1 TraesCS2B01G203400 chr2B 95.382 1386 46 10 1 1379 183059823 183061197 0.000000e+00 2189.0
2 TraesCS2B01G203400 chr2B 97.015 1206 29 4 522 1722 183012621 183013824 0.000000e+00 2021.0
3 TraesCS2B01G203400 chr2B 91.442 1297 62 22 1372 2632 183062543 183063826 0.000000e+00 1735.0
4 TraesCS2B01G203400 chr2B 85.106 1128 107 27 579 1699 182935916 182936989 0.000000e+00 1096.0
5 TraesCS2B01G203400 chr2B 87.148 887 81 10 849 1722 183198986 183199852 0.000000e+00 976.0
6 TraesCS2B01G203400 chr2B 88.677 786 62 12 524 1302 182959136 182959901 0.000000e+00 933.0
7 TraesCS2B01G203400 chr2B 93.234 606 31 6 2031 2632 183200247 183200846 0.000000e+00 883.0
8 TraesCS2B01G203400 chr2B 85.886 581 37 21 1719 2275 183013865 183014424 7.630000e-161 577.0
9 TraesCS2B01G203400 chr2B 89.781 411 32 10 1294 1699 182964710 182965115 4.690000e-143 518.0
10 TraesCS2B01G203400 chr2B 88.380 284 20 6 2 273 183012354 183012636 2.360000e-86 329.0
11 TraesCS2B01G203400 chr2B 89.796 196 19 1 579 773 183198774 183198969 1.890000e-62 250.0
12 TraesCS2B01G203400 chr2B 91.954 174 9 3 2633 2804 183063888 183064058 4.090000e-59 239.0
13 TraesCS2B01G203400 chr2B 81.560 282 32 11 1936 2203 182954045 182954320 6.890000e-52 215.0
14 TraesCS2B01G203400 chr2B 92.126 127 7 3 2678 2804 183206784 183206907 3.250000e-40 176.0
15 TraesCS2B01G203400 chr2B 93.976 83 5 0 1882 1964 183200142 183200224 3.320000e-25 126.0
16 TraesCS2B01G203400 chr2B 90.909 88 5 2 1786 1873 182965225 182965309 7.190000e-22 115.0
17 TraesCS2B01G203400 chr2D 86.499 1311 100 33 579 1874 129788747 129789995 0.000000e+00 1369.0
18 TraesCS2B01G203400 chr2D 94.591 758 25 8 1882 2632 129800020 129800768 0.000000e+00 1158.0
19 TraesCS2B01G203400 chr2D 91.385 650 43 4 1077 1722 129799144 129799784 0.000000e+00 878.0
20 TraesCS2B01G203400 chr2D 91.167 600 50 1 985 1584 129352954 129353550 0.000000e+00 811.0
21 TraesCS2B01G203400 chr2D 93.817 372 21 2 2804 3173 637498099 637498470 2.760000e-155 558.0
22 TraesCS2B01G203400 chr2D 85.958 527 62 6 985 1511 136181691 136181177 1.290000e-153 553.0
23 TraesCS2B01G203400 chr2D 86.779 416 39 8 584 987 129352502 129352913 1.740000e-122 449.0
24 TraesCS2B01G203400 chr2D 87.393 349 27 13 1935 2279 129355645 129355980 4.960000e-103 385.0
25 TraesCS2B01G203400 chr2D 85.517 290 30 3 1934 2217 136177397 136177114 3.100000e-75 292.0
26 TraesCS2B01G203400 chr2D 96.319 163 3 1 1719 1878 129799825 129799987 6.750000e-67 265.0
27 TraesCS2B01G203400 chr2D 91.279 172 12 2 2633 2804 129800828 129800996 6.840000e-57 231.0
28 TraesCS2B01G203400 chr2D 87.603 121 6 3 849 968 136181844 136181732 7.140000e-27 132.0
29 TraesCS2B01G203400 chr2D 84.946 93 8 4 1786 1877 136180913 136180826 4.360000e-14 89.8
30 TraesCS2B01G203400 chr2A 85.497 855 103 12 849 1699 136125692 136126529 0.000000e+00 872.0
31 TraesCS2B01G203400 chr2A 88.327 257 26 2 21 273 672521547 672521803 3.980000e-79 305.0
32 TraesCS2B01G203400 chr2A 78.832 137 23 5 2406 2536 144274993 144274857 1.570000e-13 87.9
33 TraesCS2B01G203400 chr2A 84.783 92 9 3 1786 1874 144275613 144275524 1.570000e-13 87.9
34 TraesCS2B01G203400 chr3A 93.801 371 21 2 2805 3173 670927635 670927265 9.940000e-155 556.0
35 TraesCS2B01G203400 chr3A 91.506 259 16 5 273 525 478106839 478106581 5.040000e-93 351.0
36 TraesCS2B01G203400 chr3A 89.020 255 24 2 21 271 108878322 108878576 2.380000e-81 313.0
37 TraesCS2B01G203400 chr3A 86.770 257 29 3 21 273 512677764 512678019 6.700000e-72 281.0
38 TraesCS2B01G203400 chr1A 93.011 372 22 4 2805 3173 427542121 427542491 1.000000e-149 540.0
39 TraesCS2B01G203400 chr4A 92.722 371 25 2 2805 3173 672765255 672765625 4.660000e-148 534.0
40 TraesCS2B01G203400 chr4A 92.761 373 21 5 2805 3173 672914980 672915350 4.660000e-148 534.0
41 TraesCS2B01G203400 chr4A 92.703 370 25 2 2805 3172 672725214 672725583 1.680000e-147 532.0
42 TraesCS2B01G203400 chr4A 92.453 371 26 2 2805 3173 673006372 673006742 2.170000e-146 529.0
43 TraesCS2B01G203400 chr4A 92.183 371 27 2 2805 3173 672870801 672871171 1.010000e-144 523.0
44 TraesCS2B01G203400 chr7A 90.836 371 23 3 2805 3173 450395416 450395777 1.320000e-133 486.0
45 TraesCS2B01G203400 chr3D 92.941 255 17 1 269 522 606361494 606361748 1.390000e-98 370.0
46 TraesCS2B01G203400 chr3D 93.802 242 12 2 273 513 157039092 157038853 8.370000e-96 361.0
47 TraesCS2B01G203400 chr3D 87.938 257 27 2 21 273 591355673 591355417 1.850000e-77 300.0
48 TraesCS2B01G203400 chr7B 91.120 259 22 1 268 525 484458859 484458601 1.810000e-92 350.0
49 TraesCS2B01G203400 chr6B 91.667 252 19 2 273 522 491611954 491612205 6.510000e-92 348.0
50 TraesCS2B01G203400 chr6D 91.633 251 20 1 273 522 350084806 350085056 2.340000e-91 346.0
51 TraesCS2B01G203400 chr4D 90.980 255 21 2 273 525 8648260 8648006 3.030000e-90 342.0
52 TraesCS2B01G203400 chr3B 90.980 255 20 3 269 522 706885917 706886169 1.090000e-89 340.0
53 TraesCS2B01G203400 chr7D 90.000 240 23 1 34 272 568905479 568905240 3.070000e-80 309.0
54 TraesCS2B01G203400 chr7D 88.672 256 24 3 21 271 610864924 610864669 1.110000e-79 307.0
55 TraesCS2B01G203400 chr6A 86.770 257 30 2 21 273 573475461 573475205 1.860000e-72 283.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G203400 chr2B 183128194 183131366 3172 False 5860.000000 5860 100.000000 1 3173 1 chr2B.!!$F4 3172
1 TraesCS2B01G203400 chr2B 183059823 183064058 4235 False 1387.666667 2189 92.926000 1 2804 3 chr2B.!!$F8 2803
2 TraesCS2B01G203400 chr2B 182935916 182936989 1073 False 1096.000000 1096 85.106000 579 1699 1 chr2B.!!$F1 1120
3 TraesCS2B01G203400 chr2B 183012354 183014424 2070 False 975.666667 2021 90.427000 2 2275 3 chr2B.!!$F7 2273
4 TraesCS2B01G203400 chr2B 182959136 182959901 765 False 933.000000 933 88.677000 524 1302 1 chr2B.!!$F3 778
5 TraesCS2B01G203400 chr2B 183198774 183200846 2072 False 558.750000 976 91.038500 579 2632 4 chr2B.!!$F9 2053
6 TraesCS2B01G203400 chr2B 182964710 182965309 599 False 316.500000 518 90.345000 1294 1873 2 chr2B.!!$F6 579
7 TraesCS2B01G203400 chr2D 129788747 129789995 1248 False 1369.000000 1369 86.499000 579 1874 1 chr2D.!!$F1 1295
8 TraesCS2B01G203400 chr2D 129799144 129800996 1852 False 633.000000 1158 93.393500 1077 2804 4 chr2D.!!$F4 1727
9 TraesCS2B01G203400 chr2D 129352502 129355980 3478 False 548.333333 811 88.446333 584 2279 3 chr2D.!!$F3 1695
10 TraesCS2B01G203400 chr2D 136177114 136181844 4730 True 266.700000 553 86.006000 849 2217 4 chr2D.!!$R1 1368
11 TraesCS2B01G203400 chr2A 136125692 136126529 837 False 872.000000 872 85.497000 849 1699 1 chr2A.!!$F1 850

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
423 437 0.323629 TCCCAACTTTCTAGCACCCG 59.676 55.000 0.0 0.0 0.0 5.28 F
493 507 0.681733 GGTGGAGCACTCTTCTGACA 59.318 55.000 0.0 0.0 34.4 3.58 F
2086 8819 1.227853 GGTTCTCTTGTGTGCCGGT 60.228 57.895 1.9 0.0 0.0 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 8726 0.532196 GATACAGTTAGCCACCCGCC 60.532 60.000 0.0 0.0 38.78 6.13 R
2094 8827 2.357760 GCGCGACCCTTACACCAA 60.358 61.111 12.1 0.0 0.00 3.67 R
2897 9702 0.178068 TCCTAGCGATCAACCTTGCC 59.822 55.000 0.0 0.0 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 66 1.825281 GCTGACACAGGCTCAGGAGT 61.825 60.000 3.97 0.00 36.43 3.85
101 105 4.631813 ACGCTTCGCTCATTAAGAAGATTT 59.368 37.500 8.41 0.00 42.75 2.17
265 278 1.006086 TGCAGCGATTGATTGTACCG 58.994 50.000 0.00 0.00 0.00 4.02
268 281 1.593006 CAGCGATTGATTGTACCGACC 59.407 52.381 0.00 0.00 0.00 4.79
308 322 6.600882 AGGCAAAAGATTTGTCTCATTCAT 57.399 33.333 4.21 0.00 25.88 2.57
347 361 5.694910 AGAGTTTATGGTCGTGTTACAACAG 59.305 40.000 0.00 0.00 40.05 3.16
353 367 3.050619 GGTCGTGTTACAACAGAGACAG 58.949 50.000 21.78 3.64 43.58 3.51
355 369 1.452025 CGTGTTACAACAGAGACAGCG 59.548 52.381 0.00 0.00 40.05 5.18
368 382 2.735478 CAGCGCCGTAACAACCGA 60.735 61.111 2.29 0.00 0.00 4.69
423 437 0.323629 TCCCAACTTTCTAGCACCCG 59.676 55.000 0.00 0.00 0.00 5.28
424 438 1.305930 CCCAACTTTCTAGCACCCGC 61.306 60.000 0.00 0.00 38.99 6.13
449 463 2.335712 CCAAAGCGTGGCCTCCTTC 61.336 63.158 3.32 0.00 41.72 3.46
450 464 1.302832 CAAAGCGTGGCCTCCTTCT 60.303 57.895 3.32 0.00 0.00 2.85
451 465 0.890996 CAAAGCGTGGCCTCCTTCTT 60.891 55.000 3.32 0.00 0.00 2.52
493 507 0.681733 GGTGGAGCACTCTTCTGACA 59.318 55.000 0.00 0.00 34.40 3.58
513 527 4.778143 ACACCCGCGCATTCCTCC 62.778 66.667 8.75 0.00 0.00 4.30
531 545 1.555992 TCCCGTTCCAATTGTACCGAT 59.444 47.619 4.43 0.00 0.00 4.18
571 585 4.688413 GCATTATTTCACCCGCAAAAAGAA 59.312 37.500 0.00 0.00 0.00 2.52
638 663 7.872483 AGCGAAATCCACTGTAATTCAATTTTT 59.128 29.630 0.00 0.00 0.00 1.94
724 750 2.823747 GGAAAGCCCCACGAAGTAAAAT 59.176 45.455 0.00 0.00 41.61 1.82
730 757 2.949644 CCCCACGAAGTAAAATCCATCC 59.050 50.000 0.00 0.00 41.61 3.51
1624 3096 5.733226 TGTGGCACTTATCGTCATTATTG 57.267 39.130 19.83 0.00 0.00 1.90
1785 4991 2.237393 GCTGGTGCTAGAGGATTCTG 57.763 55.000 0.00 0.00 34.79 3.02
1863 5072 7.307219 GGGCTTTCTGTACATATACGTCAATTC 60.307 40.741 0.00 0.00 33.60 2.17
1959 8679 5.633830 TTGAATTGCTCCAGCTTTTCTAG 57.366 39.130 0.00 0.00 42.66 2.43
2086 8819 1.227853 GGTTCTCTTGTGTGCCGGT 60.228 57.895 1.90 0.00 0.00 5.28
2094 8827 0.107410 TTGTGTGCCGGTTGAGAAGT 60.107 50.000 1.90 0.00 0.00 3.01
2121 8854 4.899239 GGTCGCGCTGCTGCCTAT 62.899 66.667 5.56 0.00 35.36 2.57
2176 8912 3.067833 GGGCAACAAGAACACTAGTCTC 58.932 50.000 0.00 0.00 39.74 3.36
2182 8918 2.300152 CAAGAACACTAGTCTCTGGCCA 59.700 50.000 4.71 4.71 0.00 5.36
2223 8959 4.009015 GGTCGTTCCCTCGTACCT 57.991 61.111 0.00 0.00 32.59 3.08
2224 8960 3.175133 GGTCGTTCCCTCGTACCTA 57.825 57.895 0.00 0.00 32.59 3.08
2225 8961 0.735471 GGTCGTTCCCTCGTACCTAC 59.265 60.000 0.00 0.00 32.59 3.18
2463 9205 2.356135 ACGAAATACTGGTGACCATGC 58.644 47.619 4.03 0.00 30.82 4.06
2487 9229 5.333952 CGTTCGATATGTAGTGGAGTAGGAC 60.334 48.000 0.00 0.00 0.00 3.85
2702 9507 0.524414 TGCGTACATACAGTCAGCGT 59.476 50.000 0.00 0.00 36.08 5.07
2766 9571 1.067071 GTCGTCAGGAAGGTACCAAGG 60.067 57.143 15.94 0.00 0.00 3.61
2774 9579 3.202373 AGGAAGGTACCAAGGGCTTATTC 59.798 47.826 15.94 5.46 0.00 1.75
2777 9582 3.190439 AGGTACCAAGGGCTTATTCTGT 58.810 45.455 15.94 0.00 0.00 3.41
2778 9583 4.368067 AGGTACCAAGGGCTTATTCTGTA 58.632 43.478 15.94 0.00 0.00 2.74
2779 9584 4.786454 AGGTACCAAGGGCTTATTCTGTAA 59.214 41.667 15.94 0.00 0.00 2.41
2780 9585 5.432060 AGGTACCAAGGGCTTATTCTGTAAT 59.568 40.000 15.94 0.00 0.00 1.89
2784 9589 6.727394 ACCAAGGGCTTATTCTGTAATAACA 58.273 36.000 0.00 0.00 34.56 2.41
2814 9619 7.999213 CATGTTGTTCATGTGTGTAAGATTTG 58.001 34.615 0.00 0.00 46.18 2.32
2815 9620 7.326968 TGTTGTTCATGTGTGTAAGATTTGA 57.673 32.000 0.00 0.00 0.00 2.69
2816 9621 7.939782 TGTTGTTCATGTGTGTAAGATTTGAT 58.060 30.769 0.00 0.00 0.00 2.57
2817 9622 7.861872 TGTTGTTCATGTGTGTAAGATTTGATG 59.138 33.333 0.00 0.00 0.00 3.07
2818 9623 6.912082 TGTTCATGTGTGTAAGATTTGATGG 58.088 36.000 0.00 0.00 0.00 3.51
2819 9624 6.714356 TGTTCATGTGTGTAAGATTTGATGGA 59.286 34.615 0.00 0.00 0.00 3.41
2820 9625 7.230309 TGTTCATGTGTGTAAGATTTGATGGAA 59.770 33.333 0.00 0.00 0.00 3.53
2821 9626 7.381766 TCATGTGTGTAAGATTTGATGGAAG 57.618 36.000 0.00 0.00 0.00 3.46
2822 9627 5.627499 TGTGTGTAAGATTTGATGGAAGC 57.373 39.130 0.00 0.00 0.00 3.86
2823 9628 4.154015 TGTGTGTAAGATTTGATGGAAGCG 59.846 41.667 0.00 0.00 0.00 4.68
2824 9629 4.154195 GTGTGTAAGATTTGATGGAAGCGT 59.846 41.667 0.00 0.00 0.00 5.07
2825 9630 4.759693 TGTGTAAGATTTGATGGAAGCGTT 59.240 37.500 0.00 0.00 0.00 4.84
2826 9631 5.240623 TGTGTAAGATTTGATGGAAGCGTTT 59.759 36.000 0.00 0.00 0.00 3.60
2827 9632 5.795441 GTGTAAGATTTGATGGAAGCGTTTC 59.205 40.000 3.02 3.02 0.00 2.78
2828 9633 5.705441 TGTAAGATTTGATGGAAGCGTTTCT 59.295 36.000 11.94 0.00 33.68 2.52
2829 9634 6.876789 TGTAAGATTTGATGGAAGCGTTTCTA 59.123 34.615 11.94 6.22 33.68 2.10
2830 9635 5.803020 AGATTTGATGGAAGCGTTTCTAC 57.197 39.130 11.94 4.68 33.68 2.59
2831 9636 5.491982 AGATTTGATGGAAGCGTTTCTACT 58.508 37.500 11.94 0.00 33.68 2.57
2832 9637 5.582665 AGATTTGATGGAAGCGTTTCTACTC 59.417 40.000 11.94 6.94 33.68 2.59
2833 9638 3.247006 TGATGGAAGCGTTTCTACTCC 57.753 47.619 11.94 0.00 33.68 3.85
2834 9639 2.832129 TGATGGAAGCGTTTCTACTCCT 59.168 45.455 11.94 0.00 33.68 3.69
2835 9640 3.119101 TGATGGAAGCGTTTCTACTCCTC 60.119 47.826 11.94 1.29 33.68 3.71
2836 9641 1.201647 TGGAAGCGTTTCTACTCCTCG 59.798 52.381 11.94 0.00 33.68 4.63
2837 9642 1.201880 GGAAGCGTTTCTACTCCTCGT 59.798 52.381 11.94 0.00 33.68 4.18
2838 9643 2.421424 GGAAGCGTTTCTACTCCTCGTA 59.579 50.000 11.94 0.00 33.68 3.43
2839 9644 3.119708 GGAAGCGTTTCTACTCCTCGTAA 60.120 47.826 11.94 0.00 33.68 3.18
2840 9645 3.761311 AGCGTTTCTACTCCTCGTAAG 57.239 47.619 0.00 0.00 0.00 2.34
2841 9646 2.422832 AGCGTTTCTACTCCTCGTAAGG 59.577 50.000 0.00 0.00 44.89 2.69
2849 9654 3.823330 CCTCGTAAGGAGCCGCGT 61.823 66.667 4.92 0.00 46.67 6.01
2850 9655 2.579787 CTCGTAAGGAGCCGCGTG 60.580 66.667 4.92 0.00 35.63 5.34
2851 9656 4.124351 TCGTAAGGAGCCGCGTGG 62.124 66.667 11.67 11.67 36.51 4.94
2852 9657 4.430765 CGTAAGGAGCCGCGTGGT 62.431 66.667 17.91 3.07 37.67 4.16
2853 9658 2.813908 GTAAGGAGCCGCGTGGTG 60.814 66.667 17.91 0.00 37.67 4.17
2854 9659 3.307906 TAAGGAGCCGCGTGGTGT 61.308 61.111 17.91 4.03 37.67 4.16
2855 9660 1.978080 TAAGGAGCCGCGTGGTGTA 60.978 57.895 17.91 0.00 37.67 2.90
2856 9661 1.324740 TAAGGAGCCGCGTGGTGTAT 61.325 55.000 17.91 0.00 37.67 2.29
2857 9662 1.324740 AAGGAGCCGCGTGGTGTATA 61.325 55.000 17.91 0.00 37.67 1.47
2858 9663 1.113517 AGGAGCCGCGTGGTGTATAT 61.114 55.000 17.91 0.00 37.67 0.86
2859 9664 0.249741 GGAGCCGCGTGGTGTATATT 60.250 55.000 17.91 0.00 37.67 1.28
2860 9665 1.578583 GAGCCGCGTGGTGTATATTT 58.421 50.000 17.91 0.00 37.67 1.40
2861 9666 2.546373 GGAGCCGCGTGGTGTATATTTA 60.546 50.000 17.91 0.00 37.67 1.40
2862 9667 3.323243 GAGCCGCGTGGTGTATATTTAT 58.677 45.455 17.91 0.00 37.67 1.40
2863 9668 3.064207 AGCCGCGTGGTGTATATTTATG 58.936 45.455 17.91 0.00 37.67 1.90
2864 9669 2.803956 GCCGCGTGGTGTATATTTATGT 59.196 45.455 17.91 0.00 37.67 2.29
2865 9670 3.363575 GCCGCGTGGTGTATATTTATGTG 60.364 47.826 17.91 0.00 37.67 3.21
2866 9671 3.363575 CCGCGTGGTGTATATTTATGTGC 60.364 47.826 6.91 0.00 0.00 4.57
2867 9672 3.660646 CGCGTGGTGTATATTTATGTGCG 60.661 47.826 0.00 0.00 34.56 5.34
2868 9673 3.491639 GCGTGGTGTATATTTATGTGCGA 59.508 43.478 0.00 0.00 0.00 5.10
2869 9674 4.607557 GCGTGGTGTATATTTATGTGCGAC 60.608 45.833 0.00 0.00 0.00 5.19
2870 9675 4.374607 CGTGGTGTATATTTATGTGCGACG 60.375 45.833 0.00 0.00 0.00 5.12
2871 9676 4.052608 TGGTGTATATTTATGTGCGACGG 58.947 43.478 0.00 0.00 0.00 4.79
2872 9677 3.430895 GGTGTATATTTATGTGCGACGGG 59.569 47.826 0.00 0.00 0.00 5.28
2873 9678 4.300803 GTGTATATTTATGTGCGACGGGA 58.699 43.478 0.00 0.00 0.00 5.14
2874 9679 4.746115 GTGTATATTTATGTGCGACGGGAA 59.254 41.667 0.00 0.00 0.00 3.97
2875 9680 5.234757 GTGTATATTTATGTGCGACGGGAAA 59.765 40.000 0.00 0.00 0.00 3.13
2876 9681 5.464057 TGTATATTTATGTGCGACGGGAAAG 59.536 40.000 0.00 0.00 0.00 2.62
2877 9682 0.800012 TTTATGTGCGACGGGAAAGC 59.200 50.000 0.00 0.00 0.00 3.51
2878 9683 1.022451 TTATGTGCGACGGGAAAGCC 61.022 55.000 0.00 0.00 0.00 4.35
2889 9694 2.049435 GGAAAGCCCCTGTTTGTGG 58.951 57.895 0.00 0.00 0.00 4.17
2890 9695 1.367471 GAAAGCCCCTGTTTGTGGC 59.633 57.895 0.00 0.00 45.70 5.01
2893 9698 2.281900 GCCCCTGTTTGTGGCGTA 60.282 61.111 0.00 0.00 35.08 4.42
2894 9699 2.622962 GCCCCTGTTTGTGGCGTAC 61.623 63.158 0.00 0.00 35.08 3.67
2895 9700 1.228003 CCCCTGTTTGTGGCGTACA 60.228 57.895 0.00 0.00 37.56 2.90
2904 9709 2.833227 TGGCGTACAAGGCAAGGT 59.167 55.556 0.00 0.00 43.90 3.50
2905 9710 1.149627 TGGCGTACAAGGCAAGGTT 59.850 52.632 0.00 0.00 43.90 3.50
2906 9711 1.169661 TGGCGTACAAGGCAAGGTTG 61.170 55.000 0.00 0.00 43.90 3.77
2907 9712 0.887387 GGCGTACAAGGCAAGGTTGA 60.887 55.000 0.00 0.00 36.61 3.18
2908 9713 1.165270 GCGTACAAGGCAAGGTTGAT 58.835 50.000 0.00 0.00 0.00 2.57
2909 9714 1.130561 GCGTACAAGGCAAGGTTGATC 59.869 52.381 0.00 0.00 0.00 2.92
2910 9715 1.393539 CGTACAAGGCAAGGTTGATCG 59.606 52.381 0.00 0.00 0.00 3.69
2911 9716 1.130561 GTACAAGGCAAGGTTGATCGC 59.869 52.381 0.00 0.00 0.00 4.58
2912 9717 0.250901 ACAAGGCAAGGTTGATCGCT 60.251 50.000 0.00 0.00 0.00 4.93
2913 9718 1.003118 ACAAGGCAAGGTTGATCGCTA 59.997 47.619 0.00 0.00 0.00 4.26
2914 9719 1.667724 CAAGGCAAGGTTGATCGCTAG 59.332 52.381 0.00 0.00 0.00 3.42
2915 9720 0.179000 AGGCAAGGTTGATCGCTAGG 59.821 55.000 0.00 0.00 0.00 3.02
2916 9721 0.178068 GGCAAGGTTGATCGCTAGGA 59.822 55.000 0.00 0.00 0.00 2.94
2917 9722 1.202698 GGCAAGGTTGATCGCTAGGAT 60.203 52.381 0.00 0.00 38.35 3.24
2918 9723 2.037251 GGCAAGGTTGATCGCTAGGATA 59.963 50.000 0.00 0.00 34.82 2.59
2919 9724 3.060602 GCAAGGTTGATCGCTAGGATAC 58.939 50.000 0.00 0.00 34.82 2.24
2920 9725 3.492656 GCAAGGTTGATCGCTAGGATACA 60.493 47.826 0.00 0.00 34.82 2.29
2921 9726 4.693283 CAAGGTTGATCGCTAGGATACAA 58.307 43.478 0.00 0.00 34.82 2.41
2922 9727 4.323553 AGGTTGATCGCTAGGATACAAC 57.676 45.455 16.82 16.82 39.63 3.32
2923 9728 3.961408 AGGTTGATCGCTAGGATACAACT 59.039 43.478 20.07 8.58 39.91 3.16
2924 9729 4.038162 AGGTTGATCGCTAGGATACAACTC 59.962 45.833 20.07 15.36 39.91 3.01
2925 9730 3.898517 TGATCGCTAGGATACAACTCG 57.101 47.619 0.00 0.00 34.82 4.18
2926 9731 3.211865 TGATCGCTAGGATACAACTCGT 58.788 45.455 0.00 0.00 34.82 4.18
2927 9732 4.383173 TGATCGCTAGGATACAACTCGTA 58.617 43.478 0.00 0.00 34.82 3.43
2928 9733 4.212847 TGATCGCTAGGATACAACTCGTAC 59.787 45.833 0.00 0.00 34.82 3.67
2929 9734 3.534554 TCGCTAGGATACAACTCGTACA 58.465 45.455 0.00 0.00 41.41 2.90
2930 9735 3.940852 TCGCTAGGATACAACTCGTACAA 59.059 43.478 0.00 0.00 41.41 2.41
2931 9736 4.395854 TCGCTAGGATACAACTCGTACAAA 59.604 41.667 0.00 0.00 41.41 2.83
2932 9737 4.733887 CGCTAGGATACAACTCGTACAAAG 59.266 45.833 0.00 0.00 41.41 2.77
2933 9738 5.448225 CGCTAGGATACAACTCGTACAAAGA 60.448 44.000 0.00 0.00 41.41 2.52
2934 9739 6.327934 GCTAGGATACAACTCGTACAAAGAA 58.672 40.000 0.00 0.00 41.41 2.52
2935 9740 6.472808 GCTAGGATACAACTCGTACAAAGAAG 59.527 42.308 0.00 0.00 41.41 2.85
2936 9741 6.585695 AGGATACAACTCGTACAAAGAAGA 57.414 37.500 0.00 0.00 41.41 2.87
2937 9742 6.622549 AGGATACAACTCGTACAAAGAAGAG 58.377 40.000 0.00 0.00 41.41 2.85
2938 9743 6.433404 AGGATACAACTCGTACAAAGAAGAGA 59.567 38.462 0.00 0.00 41.41 3.10
2939 9744 6.748198 GGATACAACTCGTACAAAGAAGAGAG 59.252 42.308 0.00 0.00 34.98 3.20
2940 9745 5.769484 ACAACTCGTACAAAGAAGAGAGA 57.231 39.130 0.00 0.00 34.98 3.10
2941 9746 6.145338 ACAACTCGTACAAAGAAGAGAGAA 57.855 37.500 0.00 0.00 34.98 2.87
2942 9747 5.978322 ACAACTCGTACAAAGAAGAGAGAAC 59.022 40.000 0.00 0.00 34.98 3.01
2943 9748 4.785417 ACTCGTACAAAGAAGAGAGAACG 58.215 43.478 0.00 0.00 34.98 3.95
2944 9749 4.514441 ACTCGTACAAAGAAGAGAGAACGA 59.486 41.667 0.00 0.00 36.74 3.85
2945 9750 5.032100 TCGTACAAAGAAGAGAGAACGAG 57.968 43.478 0.00 0.00 33.64 4.18
2946 9751 4.083431 TCGTACAAAGAAGAGAGAACGAGG 60.083 45.833 0.00 0.00 33.64 4.63
2947 9752 4.320348 CGTACAAAGAAGAGAGAACGAGGT 60.320 45.833 0.00 0.00 0.00 3.85
2948 9753 5.106791 CGTACAAAGAAGAGAGAACGAGGTA 60.107 44.000 0.00 0.00 0.00 3.08
2949 9754 5.379732 ACAAAGAAGAGAGAACGAGGTAG 57.620 43.478 0.00 0.00 0.00 3.18
2950 9755 4.828387 ACAAAGAAGAGAGAACGAGGTAGT 59.172 41.667 0.00 0.00 0.00 2.73
2951 9756 5.302313 ACAAAGAAGAGAGAACGAGGTAGTT 59.698 40.000 0.00 0.00 36.99 2.24
2952 9757 6.489361 ACAAAGAAGAGAGAACGAGGTAGTTA 59.511 38.462 0.00 0.00 34.00 2.24
2953 9758 6.499234 AAGAAGAGAGAACGAGGTAGTTAC 57.501 41.667 0.00 0.00 34.00 2.50
2954 9759 4.630940 AGAAGAGAGAACGAGGTAGTTACG 59.369 45.833 0.00 0.00 34.00 3.18
2955 9760 4.199432 AGAGAGAACGAGGTAGTTACGA 57.801 45.455 0.00 0.00 34.00 3.43
2956 9761 4.183101 AGAGAGAACGAGGTAGTTACGAG 58.817 47.826 0.00 0.00 34.00 4.18
2957 9762 4.081752 AGAGAGAACGAGGTAGTTACGAGA 60.082 45.833 0.00 0.00 34.00 4.04
2958 9763 4.183101 AGAGAACGAGGTAGTTACGAGAG 58.817 47.826 0.00 0.00 34.00 3.20
2959 9764 3.269178 AGAACGAGGTAGTTACGAGAGG 58.731 50.000 0.00 0.00 34.00 3.69
2960 9765 2.035530 ACGAGGTAGTTACGAGAGGG 57.964 55.000 0.00 0.00 0.00 4.30
2961 9766 1.556911 ACGAGGTAGTTACGAGAGGGA 59.443 52.381 0.00 0.00 0.00 4.20
2962 9767 2.026822 ACGAGGTAGTTACGAGAGGGAA 60.027 50.000 0.00 0.00 0.00 3.97
2963 9768 3.212685 CGAGGTAGTTACGAGAGGGAAT 58.787 50.000 0.00 0.00 0.00 3.01
2964 9769 4.141620 ACGAGGTAGTTACGAGAGGGAATA 60.142 45.833 0.00 0.00 0.00 1.75
2965 9770 4.451774 CGAGGTAGTTACGAGAGGGAATAG 59.548 50.000 0.00 0.00 0.00 1.73
2966 9771 5.619220 GAGGTAGTTACGAGAGGGAATAGA 58.381 45.833 0.00 0.00 0.00 1.98
2967 9772 5.623169 AGGTAGTTACGAGAGGGAATAGAG 58.377 45.833 0.00 0.00 0.00 2.43
2968 9773 5.369110 AGGTAGTTACGAGAGGGAATAGAGA 59.631 44.000 0.00 0.00 0.00 3.10
2969 9774 6.044637 AGGTAGTTACGAGAGGGAATAGAGAT 59.955 42.308 0.00 0.00 0.00 2.75
2970 9775 7.237263 AGGTAGTTACGAGAGGGAATAGAGATA 59.763 40.741 0.00 0.00 0.00 1.98
2971 9776 7.550196 GGTAGTTACGAGAGGGAATAGAGATAG 59.450 44.444 0.00 0.00 0.00 2.08
2972 9777 6.478129 AGTTACGAGAGGGAATAGAGATAGG 58.522 44.000 0.00 0.00 0.00 2.57
2973 9778 6.272792 AGTTACGAGAGGGAATAGAGATAGGA 59.727 42.308 0.00 0.00 0.00 2.94
2974 9779 5.174037 ACGAGAGGGAATAGAGATAGGAG 57.826 47.826 0.00 0.00 0.00 3.69
2975 9780 4.847512 ACGAGAGGGAATAGAGATAGGAGA 59.152 45.833 0.00 0.00 0.00 3.71
2976 9781 5.491078 ACGAGAGGGAATAGAGATAGGAGAT 59.509 44.000 0.00 0.00 0.00 2.75
2977 9782 6.674861 ACGAGAGGGAATAGAGATAGGAGATA 59.325 42.308 0.00 0.00 0.00 1.98
2978 9783 7.147549 ACGAGAGGGAATAGAGATAGGAGATAG 60.148 44.444 0.00 0.00 0.00 2.08
2979 9784 7.147549 CGAGAGGGAATAGAGATAGGAGATAGT 60.148 44.444 0.00 0.00 0.00 2.12
2980 9785 8.476829 AGAGGGAATAGAGATAGGAGATAGTT 57.523 38.462 0.00 0.00 0.00 2.24
2981 9786 8.336235 AGAGGGAATAGAGATAGGAGATAGTTG 58.664 40.741 0.00 0.00 0.00 3.16
2982 9787 8.238365 AGGGAATAGAGATAGGAGATAGTTGA 57.762 38.462 0.00 0.00 0.00 3.18
2983 9788 8.336235 AGGGAATAGAGATAGGAGATAGTTGAG 58.664 40.741 0.00 0.00 0.00 3.02
2984 9789 8.333235 GGGAATAGAGATAGGAGATAGTTGAGA 58.667 40.741 0.00 0.00 0.00 3.27
2985 9790 9.920946 GGAATAGAGATAGGAGATAGTTGAGAT 57.079 37.037 0.00 0.00 0.00 2.75
3018 9823 8.747538 AGTTTAAACCATATCATCTAACACCC 57.252 34.615 14.72 0.00 0.00 4.61
3019 9824 8.557450 AGTTTAAACCATATCATCTAACACCCT 58.443 33.333 14.72 0.00 0.00 4.34
3020 9825 9.185680 GTTTAAACCATATCATCTAACACCCTT 57.814 33.333 7.12 0.00 0.00 3.95
3021 9826 9.762381 TTTAAACCATATCATCTAACACCCTTT 57.238 29.630 0.00 0.00 0.00 3.11
3022 9827 7.881775 AAACCATATCATCTAACACCCTTTC 57.118 36.000 0.00 0.00 0.00 2.62
3023 9828 6.831664 ACCATATCATCTAACACCCTTTCT 57.168 37.500 0.00 0.00 0.00 2.52
3024 9829 7.213178 ACCATATCATCTAACACCCTTTCTT 57.787 36.000 0.00 0.00 0.00 2.52
3025 9830 8.331931 ACCATATCATCTAACACCCTTTCTTA 57.668 34.615 0.00 0.00 0.00 2.10
3026 9831 8.778059 ACCATATCATCTAACACCCTTTCTTAA 58.222 33.333 0.00 0.00 0.00 1.85
3027 9832 9.799106 CCATATCATCTAACACCCTTTCTTAAT 57.201 33.333 0.00 0.00 0.00 1.40
3031 9836 8.146053 TCATCTAACACCCTTTCTTAATCTCA 57.854 34.615 0.00 0.00 0.00 3.27
3032 9837 8.602424 TCATCTAACACCCTTTCTTAATCTCAA 58.398 33.333 0.00 0.00 0.00 3.02
3033 9838 8.669243 CATCTAACACCCTTTCTTAATCTCAAC 58.331 37.037 0.00 0.00 0.00 3.18
3034 9839 7.974504 TCTAACACCCTTTCTTAATCTCAACT 58.025 34.615 0.00 0.00 0.00 3.16
3035 9840 9.096823 TCTAACACCCTTTCTTAATCTCAACTA 57.903 33.333 0.00 0.00 0.00 2.24
3036 9841 7.981102 AACACCCTTTCTTAATCTCAACTAC 57.019 36.000 0.00 0.00 0.00 2.73
3037 9842 6.473758 ACACCCTTTCTTAATCTCAACTACC 58.526 40.000 0.00 0.00 0.00 3.18
3038 9843 6.272558 ACACCCTTTCTTAATCTCAACTACCT 59.727 38.462 0.00 0.00 0.00 3.08
3039 9844 7.456902 ACACCCTTTCTTAATCTCAACTACCTA 59.543 37.037 0.00 0.00 0.00 3.08
3040 9845 7.764901 CACCCTTTCTTAATCTCAACTACCTAC 59.235 40.741 0.00 0.00 0.00 3.18
3041 9846 7.456902 ACCCTTTCTTAATCTCAACTACCTACA 59.543 37.037 0.00 0.00 0.00 2.74
3042 9847 8.487028 CCCTTTCTTAATCTCAACTACCTACAT 58.513 37.037 0.00 0.00 0.00 2.29
3043 9848 9.892130 CCTTTCTTAATCTCAACTACCTACATT 57.108 33.333 0.00 0.00 0.00 2.71
3052 9857 9.739276 ATCTCAACTACCTACATTCAATTTTCA 57.261 29.630 0.00 0.00 0.00 2.69
3053 9858 9.567776 TCTCAACTACCTACATTCAATTTTCAA 57.432 29.630 0.00 0.00 0.00 2.69
3077 9882 6.409524 TTGAATTCTTCAAATGGCTTGACT 57.590 33.333 7.05 0.00 45.94 3.41
3078 9883 5.775686 TGAATTCTTCAAATGGCTTGACTG 58.224 37.500 7.05 0.00 43.90 3.51
3079 9884 4.796038 ATTCTTCAAATGGCTTGACTGG 57.204 40.909 0.00 0.00 43.90 4.00
3080 9885 1.888512 TCTTCAAATGGCTTGACTGGC 59.111 47.619 0.00 0.00 43.90 4.85
3081 9886 1.614903 CTTCAAATGGCTTGACTGGCA 59.385 47.619 0.00 0.00 43.90 4.92
3082 9887 1.702182 TCAAATGGCTTGACTGGCAA 58.298 45.000 0.00 0.00 45.43 4.52
3083 9888 2.037901 TCAAATGGCTTGACTGGCAAA 58.962 42.857 0.00 0.00 45.43 3.68
3084 9889 2.036217 TCAAATGGCTTGACTGGCAAAG 59.964 45.455 0.00 0.00 45.43 2.77
3085 9890 0.319405 AATGGCTTGACTGGCAAAGC 59.681 50.000 12.81 12.81 45.43 3.51
3086 9891 0.541296 ATGGCTTGACTGGCAAAGCT 60.541 50.000 18.77 1.24 45.43 3.74
3087 9892 0.756442 TGGCTTGACTGGCAAAGCTT 60.756 50.000 18.77 0.00 39.58 3.74
3088 9893 0.390492 GGCTTGACTGGCAAAGCTTT 59.610 50.000 18.77 5.69 35.74 3.51
3089 9894 1.613437 GGCTTGACTGGCAAAGCTTTA 59.387 47.619 18.77 0.00 35.74 1.85
3090 9895 2.352127 GGCTTGACTGGCAAAGCTTTAG 60.352 50.000 18.77 8.64 35.74 1.85
3091 9896 2.294512 GCTTGACTGGCAAAGCTTTAGT 59.705 45.455 12.25 12.07 35.74 2.24
3092 9897 3.854784 GCTTGACTGGCAAAGCTTTAGTG 60.855 47.826 16.02 5.15 35.74 2.74
3093 9898 3.207265 TGACTGGCAAAGCTTTAGTGA 57.793 42.857 16.02 6.73 0.00 3.41
3094 9899 3.550820 TGACTGGCAAAGCTTTAGTGAA 58.449 40.909 16.02 3.86 0.00 3.18
3095 9900 3.951037 TGACTGGCAAAGCTTTAGTGAAA 59.049 39.130 16.02 1.77 0.00 2.69
3096 9901 4.202010 TGACTGGCAAAGCTTTAGTGAAAC 60.202 41.667 16.02 4.53 0.00 2.78
3097 9902 3.068165 ACTGGCAAAGCTTTAGTGAAACC 59.932 43.478 12.25 5.71 37.80 3.27
3098 9903 3.027412 TGGCAAAGCTTTAGTGAAACCA 58.973 40.909 12.25 8.12 37.80 3.67
3099 9904 3.640967 TGGCAAAGCTTTAGTGAAACCAT 59.359 39.130 12.25 0.00 37.80 3.55
3100 9905 4.100808 TGGCAAAGCTTTAGTGAAACCATT 59.899 37.500 12.25 0.00 37.80 3.16
3101 9906 5.056480 GGCAAAGCTTTAGTGAAACCATTT 58.944 37.500 12.25 0.00 37.80 2.32
3102 9907 5.050159 GGCAAAGCTTTAGTGAAACCATTTG 60.050 40.000 12.25 0.00 37.80 2.32
3103 9908 5.558844 GCAAAGCTTTAGTGAAACCATTTGC 60.559 40.000 12.25 2.68 41.91 3.68
3104 9909 4.257267 AGCTTTAGTGAAACCATTTGCC 57.743 40.909 0.00 0.00 37.80 4.52
3105 9910 3.640967 AGCTTTAGTGAAACCATTTGCCA 59.359 39.130 0.00 0.00 37.80 4.92
3106 9911 3.740832 GCTTTAGTGAAACCATTTGCCAC 59.259 43.478 0.00 0.00 37.80 5.01
3107 9912 4.501400 GCTTTAGTGAAACCATTTGCCACT 60.501 41.667 0.00 0.00 40.66 4.00
3108 9913 5.600696 CTTTAGTGAAACCATTTGCCACTT 58.399 37.500 0.00 0.00 38.76 3.16
3109 9914 3.733443 AGTGAAACCATTTGCCACTTC 57.267 42.857 0.00 0.00 37.80 3.01
3110 9915 3.030291 AGTGAAACCATTTGCCACTTCA 58.970 40.909 0.00 0.00 37.80 3.02
3111 9916 3.642848 AGTGAAACCATTTGCCACTTCAT 59.357 39.130 0.00 0.00 37.80 2.57
3112 9917 3.989817 GTGAAACCATTTGCCACTTCATC 59.010 43.478 0.00 0.00 0.00 2.92
3113 9918 3.006752 TGAAACCATTTGCCACTTCATCC 59.993 43.478 0.00 0.00 0.00 3.51
3114 9919 2.610438 ACCATTTGCCACTTCATCCT 57.390 45.000 0.00 0.00 0.00 3.24
3115 9920 2.893424 ACCATTTGCCACTTCATCCTT 58.107 42.857 0.00 0.00 0.00 3.36
3116 9921 2.564062 ACCATTTGCCACTTCATCCTTG 59.436 45.455 0.00 0.00 0.00 3.61
3117 9922 2.093869 CCATTTGCCACTTCATCCTTGG 60.094 50.000 0.00 0.00 0.00 3.61
3118 9923 2.673775 TTTGCCACTTCATCCTTGGA 57.326 45.000 0.00 0.00 31.39 3.53
3119 9924 2.673775 TTGCCACTTCATCCTTGGAA 57.326 45.000 0.00 0.00 31.39 3.53
3120 9925 2.205022 TGCCACTTCATCCTTGGAAG 57.795 50.000 0.00 0.00 45.63 3.46
3121 9926 1.272092 TGCCACTTCATCCTTGGAAGG 60.272 52.381 7.04 0.00 44.69 3.46
3137 9942 7.190920 CTTGGAAGGAATAAATCGTATGTCC 57.809 40.000 0.00 0.00 0.00 4.02
3138 9943 6.241882 TGGAAGGAATAAATCGTATGTCCA 57.758 37.500 0.00 0.00 0.00 4.02
3139 9944 6.288294 TGGAAGGAATAAATCGTATGTCCAG 58.712 40.000 0.00 0.00 0.00 3.86
3140 9945 5.179555 GGAAGGAATAAATCGTATGTCCAGC 59.820 44.000 0.00 0.00 0.00 4.85
3141 9946 5.552870 AGGAATAAATCGTATGTCCAGCT 57.447 39.130 0.00 0.00 0.00 4.24
3142 9947 5.930135 AGGAATAAATCGTATGTCCAGCTT 58.070 37.500 0.00 0.00 0.00 3.74
3143 9948 5.992217 AGGAATAAATCGTATGTCCAGCTTC 59.008 40.000 0.00 0.00 0.00 3.86
3144 9949 5.992217 GGAATAAATCGTATGTCCAGCTTCT 59.008 40.000 0.00 0.00 0.00 2.85
3145 9950 6.483640 GGAATAAATCGTATGTCCAGCTTCTT 59.516 38.462 0.00 0.00 0.00 2.52
3146 9951 7.307455 GGAATAAATCGTATGTCCAGCTTCTTC 60.307 40.741 0.00 0.00 0.00 2.87
3147 9952 4.744795 AATCGTATGTCCAGCTTCTTCT 57.255 40.909 0.00 0.00 0.00 2.85
3148 9953 3.784701 TCGTATGTCCAGCTTCTTCTC 57.215 47.619 0.00 0.00 0.00 2.87
3149 9954 3.357203 TCGTATGTCCAGCTTCTTCTCT 58.643 45.455 0.00 0.00 0.00 3.10
3150 9955 3.129462 TCGTATGTCCAGCTTCTTCTCTG 59.871 47.826 0.00 0.00 0.00 3.35
3151 9956 2.399916 ATGTCCAGCTTCTTCTCTGC 57.600 50.000 0.00 0.00 0.00 4.26
3152 9957 1.051008 TGTCCAGCTTCTTCTCTGCA 58.949 50.000 0.00 0.00 0.00 4.41
3153 9958 1.417517 TGTCCAGCTTCTTCTCTGCAA 59.582 47.619 0.00 0.00 0.00 4.08
3154 9959 1.803555 GTCCAGCTTCTTCTCTGCAAC 59.196 52.381 0.00 0.00 0.00 4.17
3155 9960 1.696336 TCCAGCTTCTTCTCTGCAACT 59.304 47.619 0.00 0.00 0.00 3.16
3156 9961 2.075338 CCAGCTTCTTCTCTGCAACTC 58.925 52.381 0.00 0.00 0.00 3.01
3157 9962 2.289569 CCAGCTTCTTCTCTGCAACTCT 60.290 50.000 0.00 0.00 0.00 3.24
3158 9963 3.401182 CAGCTTCTTCTCTGCAACTCTT 58.599 45.455 0.00 0.00 0.00 2.85
3159 9964 3.814283 CAGCTTCTTCTCTGCAACTCTTT 59.186 43.478 0.00 0.00 0.00 2.52
3160 9965 4.064388 AGCTTCTTCTCTGCAACTCTTTC 58.936 43.478 0.00 0.00 0.00 2.62
3161 9966 4.064388 GCTTCTTCTCTGCAACTCTTTCT 58.936 43.478 0.00 0.00 0.00 2.52
3162 9967 4.152223 GCTTCTTCTCTGCAACTCTTTCTC 59.848 45.833 0.00 0.00 0.00 2.87
3163 9968 5.540911 CTTCTTCTCTGCAACTCTTTCTCT 58.459 41.667 0.00 0.00 0.00 3.10
3164 9969 5.132897 TCTTCTCTGCAACTCTTTCTCTC 57.867 43.478 0.00 0.00 0.00 3.20
3165 9970 4.586421 TCTTCTCTGCAACTCTTTCTCTCA 59.414 41.667 0.00 0.00 0.00 3.27
3166 9971 4.250116 TCTCTGCAACTCTTTCTCTCAC 57.750 45.455 0.00 0.00 0.00 3.51
3167 9972 3.638627 TCTCTGCAACTCTTTCTCTCACA 59.361 43.478 0.00 0.00 0.00 3.58
3168 9973 4.100035 TCTCTGCAACTCTTTCTCTCACAA 59.900 41.667 0.00 0.00 0.00 3.33
3169 9974 4.769688 TCTGCAACTCTTTCTCTCACAAA 58.230 39.130 0.00 0.00 0.00 2.83
3170 9975 4.813161 TCTGCAACTCTTTCTCTCACAAAG 59.187 41.667 0.00 0.00 32.89 2.77
3171 9976 4.517285 TGCAACTCTTTCTCTCACAAAGT 58.483 39.130 0.00 0.00 33.32 2.66
3172 9977 4.333649 TGCAACTCTTTCTCTCACAAAGTG 59.666 41.667 0.00 0.00 33.32 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 105 6.575244 ATCATGAAGGGACATAAGGTAACA 57.425 37.500 0.00 0.00 41.41 2.41
164 168 8.251721 ACGAGCAAACTTAGTTAGACTATCATT 58.748 33.333 0.00 0.00 29.64 2.57
176 180 4.618693 GCCTTCTAGACGAGCAAACTTAGT 60.619 45.833 0.00 0.00 0.00 2.24
284 298 6.017400 TGAATGAGACAAATCTTTTGCCTC 57.983 37.500 8.73 8.73 34.34 4.70
347 361 1.623973 GGTTGTTACGGCGCTGTCTC 61.624 60.000 28.15 19.71 0.00 3.36
353 367 0.316854 TTTTTCGGTTGTTACGGCGC 60.317 50.000 6.90 0.00 0.00 6.53
423 437 1.579429 CCACGCTTTGGGTAACTGC 59.421 57.895 0.00 0.00 42.54 4.40
449 463 1.135859 GTGCTTCTCGCCAACATCAAG 60.136 52.381 0.00 0.00 38.05 3.02
450 464 0.874390 GTGCTTCTCGCCAACATCAA 59.126 50.000 0.00 0.00 38.05 2.57
451 465 0.955428 GGTGCTTCTCGCCAACATCA 60.955 55.000 0.00 0.00 44.77 3.07
493 507 1.862602 GAGGAATGCGCGGGTGTTTT 61.863 55.000 8.83 0.00 0.00 2.43
513 527 2.901249 AGATCGGTACAATTGGAACGG 58.099 47.619 27.19 18.33 0.00 4.44
638 663 1.987704 GCACACGTGAACTTGTGGCA 61.988 55.000 25.01 0.00 43.64 4.92
709 735 2.949644 GGATGGATTTTACTTCGTGGGG 59.050 50.000 0.00 0.00 0.00 4.96
724 750 3.262151 TGAGGAAATTGTACACGGATGGA 59.738 43.478 0.00 0.00 0.00 3.41
730 757 5.869344 TCTCTGATTGAGGAAATTGTACACG 59.131 40.000 0.00 0.00 42.86 4.49
1146 1234 1.000394 TCGGACAAGAGCATCGTCAAA 60.000 47.619 0.00 0.00 42.67 2.69
1624 3096 2.951458 GCCGGCAACAAGTACCAC 59.049 61.111 24.80 0.00 0.00 4.16
1863 5072 7.484641 CGGTGGAGTAATTAACAATGTTCATTG 59.515 37.037 19.75 19.75 37.54 2.82
2001 8726 0.532196 GATACAGTTAGCCACCCGCC 60.532 60.000 0.00 0.00 38.78 6.13
2086 8819 3.493699 CGACCCTTACACCAACTTCTCAA 60.494 47.826 0.00 0.00 0.00 3.02
2094 8827 2.357760 GCGCGACCCTTACACCAA 60.358 61.111 12.10 0.00 0.00 3.67
2225 8961 2.544686 TGTCACCACAAACGGAAATACG 59.455 45.455 0.00 0.00 40.31 3.06
2226 8962 3.810941 TCTGTCACCACAAACGGAAATAC 59.189 43.478 0.00 0.00 29.82 1.89
2463 9205 4.753610 TCCTACTCCACTACATATCGAACG 59.246 45.833 0.00 0.00 0.00 3.95
2487 9229 6.441093 TTGCAATAGAAGTTCCAATGCTAG 57.559 37.500 19.11 0.00 33.66 3.42
2605 9347 5.761165 TCGCATCATGTCATTTGAATGAT 57.239 34.783 9.42 4.67 46.17 2.45
2606 9348 5.334319 GTTCGCATCATGTCATTTGAATGA 58.666 37.500 2.39 2.39 42.78 2.57
2636 9441 3.876341 ACACGGAACAACCTAAGAAACA 58.124 40.909 0.00 0.00 36.31 2.83
2643 9448 8.313292 ACAATATAAGTTACACGGAACAACCTA 58.687 33.333 0.00 0.00 36.31 3.08
2675 9480 3.435566 ACTGTATGTACGCACAAGATCG 58.564 45.455 0.00 0.00 38.42 3.69
2702 9507 4.640201 GCCTGCTTATATGGTTGACAAGAA 59.360 41.667 0.00 0.00 0.00 2.52
2751 9556 0.698818 AAGCCCTTGGTACCTTCCTG 59.301 55.000 14.36 0.00 0.00 3.86
2804 9609 5.705441 AGAAACGCTTCCATCAAATCTTACA 59.295 36.000 0.00 0.00 31.28 2.41
2805 9610 6.183309 AGAAACGCTTCCATCAAATCTTAC 57.817 37.500 0.00 0.00 31.28 2.34
2806 9611 7.103641 AGTAGAAACGCTTCCATCAAATCTTA 58.896 34.615 0.00 0.00 31.28 2.10
2807 9612 5.940470 AGTAGAAACGCTTCCATCAAATCTT 59.060 36.000 0.00 0.00 31.28 2.40
2808 9613 5.491982 AGTAGAAACGCTTCCATCAAATCT 58.508 37.500 0.00 0.00 31.28 2.40
2809 9614 5.220681 GGAGTAGAAACGCTTCCATCAAATC 60.221 44.000 0.00 0.00 31.28 2.17
2810 9615 4.636206 GGAGTAGAAACGCTTCCATCAAAT 59.364 41.667 0.00 0.00 31.28 2.32
2811 9616 4.000988 GGAGTAGAAACGCTTCCATCAAA 58.999 43.478 0.00 0.00 31.28 2.69
2812 9617 3.260884 AGGAGTAGAAACGCTTCCATCAA 59.739 43.478 0.00 0.00 31.28 2.57
2813 9618 2.832129 AGGAGTAGAAACGCTTCCATCA 59.168 45.455 0.00 0.00 31.28 3.07
2814 9619 3.449632 GAGGAGTAGAAACGCTTCCATC 58.550 50.000 0.00 0.00 31.28 3.51
2815 9620 2.159226 CGAGGAGTAGAAACGCTTCCAT 60.159 50.000 0.00 0.00 29.34 3.41
2816 9621 1.201647 CGAGGAGTAGAAACGCTTCCA 59.798 52.381 0.00 0.00 29.34 3.53
2817 9622 1.201880 ACGAGGAGTAGAAACGCTTCC 59.798 52.381 0.00 0.00 29.34 3.46
2818 9623 2.633199 ACGAGGAGTAGAAACGCTTC 57.367 50.000 0.00 0.00 0.00 3.86
2819 9624 3.119566 CCTTACGAGGAGTAGAAACGCTT 60.120 47.826 0.00 0.00 46.74 4.68
2820 9625 2.422832 CCTTACGAGGAGTAGAAACGCT 59.577 50.000 0.00 0.00 46.74 5.07
2821 9626 2.795117 CCTTACGAGGAGTAGAAACGC 58.205 52.381 0.00 0.00 46.74 4.84
2832 9637 3.823330 ACGCGGCTCCTTACGAGG 61.823 66.667 12.47 0.00 45.02 4.63
2833 9638 2.579787 CACGCGGCTCCTTACGAG 60.580 66.667 12.47 0.00 42.04 4.18
2834 9639 4.124351 CCACGCGGCTCCTTACGA 62.124 66.667 12.47 0.00 0.00 3.43
2835 9640 4.430765 ACCACGCGGCTCCTTACG 62.431 66.667 12.47 0.00 34.57 3.18
2836 9641 2.216750 TACACCACGCGGCTCCTTAC 62.217 60.000 12.47 0.00 34.57 2.34
2837 9642 1.324740 ATACACCACGCGGCTCCTTA 61.325 55.000 12.47 0.00 34.57 2.69
2838 9643 1.324740 TATACACCACGCGGCTCCTT 61.325 55.000 12.47 0.00 34.57 3.36
2839 9644 1.113517 ATATACACCACGCGGCTCCT 61.114 55.000 12.47 0.00 34.57 3.69
2840 9645 0.249741 AATATACACCACGCGGCTCC 60.250 55.000 12.47 0.00 34.57 4.70
2841 9646 1.578583 AAATATACACCACGCGGCTC 58.421 50.000 12.47 0.00 34.57 4.70
2842 9647 2.894763 TAAATATACACCACGCGGCT 57.105 45.000 12.47 0.00 34.57 5.52
2843 9648 2.803956 ACATAAATATACACCACGCGGC 59.196 45.455 12.47 0.00 34.57 6.53
2844 9649 3.363575 GCACATAAATATACACCACGCGG 60.364 47.826 12.47 0.00 38.77 6.46
2845 9650 3.660646 CGCACATAAATATACACCACGCG 60.661 47.826 3.53 3.53 0.00 6.01
2846 9651 3.491639 TCGCACATAAATATACACCACGC 59.508 43.478 0.00 0.00 0.00 5.34
2847 9652 4.374607 CGTCGCACATAAATATACACCACG 60.375 45.833 0.00 0.00 0.00 4.94
2848 9653 4.084745 CCGTCGCACATAAATATACACCAC 60.085 45.833 0.00 0.00 0.00 4.16
2849 9654 4.052608 CCGTCGCACATAAATATACACCA 58.947 43.478 0.00 0.00 0.00 4.17
2850 9655 3.430895 CCCGTCGCACATAAATATACACC 59.569 47.826 0.00 0.00 0.00 4.16
2851 9656 4.300803 TCCCGTCGCACATAAATATACAC 58.699 43.478 0.00 0.00 0.00 2.90
2852 9657 4.587584 TCCCGTCGCACATAAATATACA 57.412 40.909 0.00 0.00 0.00 2.29
2853 9658 5.614013 GCTTTCCCGTCGCACATAAATATAC 60.614 44.000 0.00 0.00 0.00 1.47
2854 9659 4.449743 GCTTTCCCGTCGCACATAAATATA 59.550 41.667 0.00 0.00 0.00 0.86
2855 9660 3.250040 GCTTTCCCGTCGCACATAAATAT 59.750 43.478 0.00 0.00 0.00 1.28
2856 9661 2.610374 GCTTTCCCGTCGCACATAAATA 59.390 45.455 0.00 0.00 0.00 1.40
2857 9662 1.400494 GCTTTCCCGTCGCACATAAAT 59.600 47.619 0.00 0.00 0.00 1.40
2858 9663 0.800012 GCTTTCCCGTCGCACATAAA 59.200 50.000 0.00 0.00 0.00 1.40
2859 9664 1.022451 GGCTTTCCCGTCGCACATAA 61.022 55.000 0.00 0.00 0.00 1.90
2860 9665 1.448893 GGCTTTCCCGTCGCACATA 60.449 57.895 0.00 0.00 0.00 2.29
2861 9666 2.746277 GGCTTTCCCGTCGCACAT 60.746 61.111 0.00 0.00 0.00 3.21
2871 9676 2.049435 CCACAAACAGGGGCTTTCC 58.951 57.895 0.00 0.00 30.89 3.13
2877 9682 0.820074 TTGTACGCCACAAACAGGGG 60.820 55.000 0.97 0.00 44.20 4.79
2878 9683 0.591170 CTTGTACGCCACAAACAGGG 59.409 55.000 4.91 0.00 46.37 4.45
2879 9684 0.591170 CCTTGTACGCCACAAACAGG 59.409 55.000 4.91 0.00 46.37 4.00
2880 9685 0.040425 GCCTTGTACGCCACAAACAG 60.040 55.000 4.91 0.00 46.37 3.16
2881 9686 0.748367 TGCCTTGTACGCCACAAACA 60.748 50.000 4.91 3.98 46.37 2.83
2882 9687 0.382515 TTGCCTTGTACGCCACAAAC 59.617 50.000 4.91 1.79 46.37 2.93
2883 9688 0.665835 CTTGCCTTGTACGCCACAAA 59.334 50.000 4.91 0.00 46.37 2.83
2884 9689 1.169661 CCTTGCCTTGTACGCCACAA 61.170 55.000 3.47 3.47 44.97 3.33
2885 9690 1.599518 CCTTGCCTTGTACGCCACA 60.600 57.895 0.00 0.00 34.51 4.17
2886 9691 1.170290 AACCTTGCCTTGTACGCCAC 61.170 55.000 0.00 0.00 0.00 5.01
2887 9692 1.149627 AACCTTGCCTTGTACGCCA 59.850 52.632 0.00 0.00 0.00 5.69
2888 9693 0.887387 TCAACCTTGCCTTGTACGCC 60.887 55.000 0.00 0.00 0.00 5.68
2889 9694 1.130561 GATCAACCTTGCCTTGTACGC 59.869 52.381 0.00 0.00 0.00 4.42
2890 9695 1.393539 CGATCAACCTTGCCTTGTACG 59.606 52.381 0.00 0.00 0.00 3.67
2891 9696 1.130561 GCGATCAACCTTGCCTTGTAC 59.869 52.381 0.00 0.00 0.00 2.90
2892 9697 1.003118 AGCGATCAACCTTGCCTTGTA 59.997 47.619 0.00 0.00 0.00 2.41
2893 9698 0.250901 AGCGATCAACCTTGCCTTGT 60.251 50.000 0.00 0.00 0.00 3.16
2894 9699 1.667724 CTAGCGATCAACCTTGCCTTG 59.332 52.381 0.00 0.00 0.00 3.61
2895 9700 1.407437 CCTAGCGATCAACCTTGCCTT 60.407 52.381 0.00 0.00 0.00 4.35
2896 9701 0.179000 CCTAGCGATCAACCTTGCCT 59.821 55.000 0.00 0.00 0.00 4.75
2897 9702 0.178068 TCCTAGCGATCAACCTTGCC 59.822 55.000 0.00 0.00 0.00 4.52
2898 9703 2.246719 ATCCTAGCGATCAACCTTGC 57.753 50.000 0.00 0.00 0.00 4.01
2899 9704 4.322080 TGTATCCTAGCGATCAACCTTG 57.678 45.455 0.00 0.00 31.92 3.61
2900 9705 4.406003 AGTTGTATCCTAGCGATCAACCTT 59.594 41.667 18.86 9.56 38.46 3.50
2901 9706 3.961408 AGTTGTATCCTAGCGATCAACCT 59.039 43.478 18.86 11.71 38.46 3.50
2902 9707 4.299978 GAGTTGTATCCTAGCGATCAACC 58.700 47.826 18.86 13.14 38.46 3.77
2903 9708 3.975670 CGAGTTGTATCCTAGCGATCAAC 59.024 47.826 17.07 17.07 38.24 3.18
2904 9709 3.630769 ACGAGTTGTATCCTAGCGATCAA 59.369 43.478 0.00 1.59 31.92 2.57
2905 9710 3.211865 ACGAGTTGTATCCTAGCGATCA 58.788 45.455 0.00 0.00 31.92 2.92
2906 9711 3.900388 ACGAGTTGTATCCTAGCGATC 57.100 47.619 0.00 0.00 31.92 3.69
2907 9712 4.132336 TGTACGAGTTGTATCCTAGCGAT 58.868 43.478 0.00 0.00 35.02 4.58
2908 9713 3.534554 TGTACGAGTTGTATCCTAGCGA 58.465 45.455 0.00 0.00 35.02 4.93
2909 9714 3.957671 TGTACGAGTTGTATCCTAGCG 57.042 47.619 0.00 0.00 35.02 4.26
2910 9715 5.888105 TCTTTGTACGAGTTGTATCCTAGC 58.112 41.667 0.00 0.00 35.02 3.42
2911 9716 7.759465 TCTTCTTTGTACGAGTTGTATCCTAG 58.241 38.462 0.00 0.00 35.02 3.02
2912 9717 7.609146 TCTCTTCTTTGTACGAGTTGTATCCTA 59.391 37.037 0.00 0.00 35.02 2.94
2913 9718 6.433404 TCTCTTCTTTGTACGAGTTGTATCCT 59.567 38.462 0.00 0.00 35.02 3.24
2914 9719 6.618811 TCTCTTCTTTGTACGAGTTGTATCC 58.381 40.000 0.00 0.00 35.02 2.59
2915 9720 7.528307 TCTCTCTTCTTTGTACGAGTTGTATC 58.472 38.462 0.00 0.00 35.02 2.24
2916 9721 7.450124 TCTCTCTTCTTTGTACGAGTTGTAT 57.550 36.000 0.00 0.00 35.02 2.29
2917 9722 6.872628 TCTCTCTTCTTTGTACGAGTTGTA 57.127 37.500 0.00 0.00 0.00 2.41
2918 9723 5.769484 TCTCTCTTCTTTGTACGAGTTGT 57.231 39.130 0.00 0.00 0.00 3.32
2919 9724 5.115773 CGTTCTCTCTTCTTTGTACGAGTTG 59.884 44.000 0.00 0.00 0.00 3.16
2920 9725 5.008415 TCGTTCTCTCTTCTTTGTACGAGTT 59.992 40.000 0.00 0.00 33.48 3.01
2921 9726 4.514441 TCGTTCTCTCTTCTTTGTACGAGT 59.486 41.667 0.00 0.00 33.48 4.18
2922 9727 5.032100 TCGTTCTCTCTTCTTTGTACGAG 57.968 43.478 0.00 0.00 33.48 4.18
2923 9728 4.083431 CCTCGTTCTCTCTTCTTTGTACGA 60.083 45.833 0.00 0.00 35.73 3.43
2924 9729 4.159857 CCTCGTTCTCTCTTCTTTGTACG 58.840 47.826 0.00 0.00 0.00 3.67
2925 9730 5.123805 ACCTCGTTCTCTCTTCTTTGTAC 57.876 43.478 0.00 0.00 0.00 2.90
2926 9731 6.002704 ACTACCTCGTTCTCTCTTCTTTGTA 58.997 40.000 0.00 0.00 0.00 2.41
2927 9732 4.828387 ACTACCTCGTTCTCTCTTCTTTGT 59.172 41.667 0.00 0.00 0.00 2.83
2928 9733 5.379732 ACTACCTCGTTCTCTCTTCTTTG 57.620 43.478 0.00 0.00 0.00 2.77
2929 9734 6.348376 CGTAACTACCTCGTTCTCTCTTCTTT 60.348 42.308 0.00 0.00 0.00 2.52
2930 9735 5.122082 CGTAACTACCTCGTTCTCTCTTCTT 59.878 44.000 0.00 0.00 0.00 2.52
2931 9736 4.630940 CGTAACTACCTCGTTCTCTCTTCT 59.369 45.833 0.00 0.00 0.00 2.85
2932 9737 4.629200 TCGTAACTACCTCGTTCTCTCTTC 59.371 45.833 0.00 0.00 0.00 2.87
2933 9738 4.573900 TCGTAACTACCTCGTTCTCTCTT 58.426 43.478 0.00 0.00 0.00 2.85
2934 9739 4.081752 TCTCGTAACTACCTCGTTCTCTCT 60.082 45.833 0.00 0.00 0.00 3.10
2935 9740 4.180057 TCTCGTAACTACCTCGTTCTCTC 58.820 47.826 0.00 0.00 0.00 3.20
2936 9741 4.183101 CTCTCGTAACTACCTCGTTCTCT 58.817 47.826 0.00 0.00 0.00 3.10
2937 9742 3.309410 CCTCTCGTAACTACCTCGTTCTC 59.691 52.174 0.00 0.00 0.00 2.87
2938 9743 3.269178 CCTCTCGTAACTACCTCGTTCT 58.731 50.000 0.00 0.00 0.00 3.01
2939 9744 2.354199 CCCTCTCGTAACTACCTCGTTC 59.646 54.545 0.00 0.00 0.00 3.95
2940 9745 2.026822 TCCCTCTCGTAACTACCTCGTT 60.027 50.000 0.00 0.00 0.00 3.85
2941 9746 1.556911 TCCCTCTCGTAACTACCTCGT 59.443 52.381 0.00 0.00 0.00 4.18
2942 9747 2.322355 TCCCTCTCGTAACTACCTCG 57.678 55.000 0.00 0.00 0.00 4.63
2943 9748 5.619220 TCTATTCCCTCTCGTAACTACCTC 58.381 45.833 0.00 0.00 0.00 3.85
2944 9749 5.369110 TCTCTATTCCCTCTCGTAACTACCT 59.631 44.000 0.00 0.00 0.00 3.08
2945 9750 5.619220 TCTCTATTCCCTCTCGTAACTACC 58.381 45.833 0.00 0.00 0.00 3.18
2946 9751 7.550196 CCTATCTCTATTCCCTCTCGTAACTAC 59.450 44.444 0.00 0.00 0.00 2.73
2947 9752 7.457218 TCCTATCTCTATTCCCTCTCGTAACTA 59.543 40.741 0.00 0.00 0.00 2.24
2948 9753 6.272792 TCCTATCTCTATTCCCTCTCGTAACT 59.727 42.308 0.00 0.00 0.00 2.24
2949 9754 6.474630 TCCTATCTCTATTCCCTCTCGTAAC 58.525 44.000 0.00 0.00 0.00 2.50
2950 9755 6.501102 TCTCCTATCTCTATTCCCTCTCGTAA 59.499 42.308 0.00 0.00 0.00 3.18
2951 9756 6.024247 TCTCCTATCTCTATTCCCTCTCGTA 58.976 44.000 0.00 0.00 0.00 3.43
2952 9757 4.847512 TCTCCTATCTCTATTCCCTCTCGT 59.152 45.833 0.00 0.00 0.00 4.18
2953 9758 5.429681 TCTCCTATCTCTATTCCCTCTCG 57.570 47.826 0.00 0.00 0.00 4.04
2954 9759 8.102484 ACTATCTCCTATCTCTATTCCCTCTC 57.898 42.308 0.00 0.00 0.00 3.20
2955 9760 8.336235 CAACTATCTCCTATCTCTATTCCCTCT 58.664 40.741 0.00 0.00 0.00 3.69
2956 9761 8.333235 TCAACTATCTCCTATCTCTATTCCCTC 58.667 40.741 0.00 0.00 0.00 4.30
2957 9762 8.238365 TCAACTATCTCCTATCTCTATTCCCT 57.762 38.462 0.00 0.00 0.00 4.20
2958 9763 8.333235 TCTCAACTATCTCCTATCTCTATTCCC 58.667 40.741 0.00 0.00 0.00 3.97
2959 9764 9.920946 ATCTCAACTATCTCCTATCTCTATTCC 57.079 37.037 0.00 0.00 0.00 3.01
2992 9797 9.185680 GGGTGTTAGATGATATGGTTTAAACTT 57.814 33.333 17.50 8.59 0.00 2.66
2993 9798 8.557450 AGGGTGTTAGATGATATGGTTTAAACT 58.443 33.333 17.50 1.96 0.00 2.66
2994 9799 8.747538 AGGGTGTTAGATGATATGGTTTAAAC 57.252 34.615 9.98 9.98 0.00 2.01
2995 9800 9.762381 AAAGGGTGTTAGATGATATGGTTTAAA 57.238 29.630 0.00 0.00 0.00 1.52
2996 9801 9.403583 GAAAGGGTGTTAGATGATATGGTTTAA 57.596 33.333 0.00 0.00 0.00 1.52
2997 9802 8.778059 AGAAAGGGTGTTAGATGATATGGTTTA 58.222 33.333 0.00 0.00 0.00 2.01
2998 9803 7.643123 AGAAAGGGTGTTAGATGATATGGTTT 58.357 34.615 0.00 0.00 0.00 3.27
2999 9804 7.213178 AGAAAGGGTGTTAGATGATATGGTT 57.787 36.000 0.00 0.00 0.00 3.67
3000 9805 6.831664 AGAAAGGGTGTTAGATGATATGGT 57.168 37.500 0.00 0.00 0.00 3.55
3001 9806 9.799106 ATTAAGAAAGGGTGTTAGATGATATGG 57.201 33.333 0.00 0.00 0.00 2.74
3005 9810 8.772250 TGAGATTAAGAAAGGGTGTTAGATGAT 58.228 33.333 0.00 0.00 0.00 2.45
3006 9811 8.146053 TGAGATTAAGAAAGGGTGTTAGATGA 57.854 34.615 0.00 0.00 0.00 2.92
3007 9812 8.669243 GTTGAGATTAAGAAAGGGTGTTAGATG 58.331 37.037 0.00 0.00 0.00 2.90
3008 9813 8.606830 AGTTGAGATTAAGAAAGGGTGTTAGAT 58.393 33.333 0.00 0.00 0.00 1.98
3009 9814 7.974504 AGTTGAGATTAAGAAAGGGTGTTAGA 58.025 34.615 0.00 0.00 0.00 2.10
3010 9815 9.152595 GTAGTTGAGATTAAGAAAGGGTGTTAG 57.847 37.037 0.00 0.00 0.00 2.34
3011 9816 8.098912 GGTAGTTGAGATTAAGAAAGGGTGTTA 58.901 37.037 0.00 0.00 0.00 2.41
3012 9817 6.940867 GGTAGTTGAGATTAAGAAAGGGTGTT 59.059 38.462 0.00 0.00 0.00 3.32
3013 9818 6.272558 AGGTAGTTGAGATTAAGAAAGGGTGT 59.727 38.462 0.00 0.00 0.00 4.16
3014 9819 6.712276 AGGTAGTTGAGATTAAGAAAGGGTG 58.288 40.000 0.00 0.00 0.00 4.61
3015 9820 6.954352 AGGTAGTTGAGATTAAGAAAGGGT 57.046 37.500 0.00 0.00 0.00 4.34
3016 9821 7.848128 TGTAGGTAGTTGAGATTAAGAAAGGG 58.152 38.462 0.00 0.00 0.00 3.95
3017 9822 9.892130 AATGTAGGTAGTTGAGATTAAGAAAGG 57.108 33.333 0.00 0.00 0.00 3.11
3026 9831 9.739276 TGAAAATTGAATGTAGGTAGTTGAGAT 57.261 29.630 0.00 0.00 0.00 2.75
3027 9832 9.567776 TTGAAAATTGAATGTAGGTAGTTGAGA 57.432 29.630 0.00 0.00 0.00 3.27
3056 9861 5.166398 CCAGTCAAGCCATTTGAAGAATTC 58.834 41.667 0.00 0.00 46.85 2.17
3057 9862 4.562143 GCCAGTCAAGCCATTTGAAGAATT 60.562 41.667 0.00 0.00 46.85 2.17
3058 9863 3.056322 GCCAGTCAAGCCATTTGAAGAAT 60.056 43.478 0.00 0.00 46.85 2.40
3059 9864 2.297033 GCCAGTCAAGCCATTTGAAGAA 59.703 45.455 0.00 0.00 46.85 2.52
3060 9865 1.888512 GCCAGTCAAGCCATTTGAAGA 59.111 47.619 0.00 0.00 46.85 2.87
3061 9866 1.614903 TGCCAGTCAAGCCATTTGAAG 59.385 47.619 0.00 0.00 46.85 3.02
3062 9867 1.702182 TGCCAGTCAAGCCATTTGAA 58.298 45.000 0.00 0.00 46.85 2.69
3063 9868 1.702182 TTGCCAGTCAAGCCATTTGA 58.298 45.000 0.00 0.00 43.40 2.69
3064 9869 2.409975 CTTTGCCAGTCAAGCCATTTG 58.590 47.619 0.00 0.00 35.84 2.32
3065 9870 1.270465 GCTTTGCCAGTCAAGCCATTT 60.270 47.619 0.00 0.00 35.84 2.32
3066 9871 0.319405 GCTTTGCCAGTCAAGCCATT 59.681 50.000 0.00 0.00 35.84 3.16
3067 9872 0.541296 AGCTTTGCCAGTCAAGCCAT 60.541 50.000 0.30 0.00 35.84 4.40
3068 9873 0.756442 AAGCTTTGCCAGTCAAGCCA 60.756 50.000 0.00 0.00 35.84 4.75
3069 9874 0.390492 AAAGCTTTGCCAGTCAAGCC 59.610 50.000 11.80 0.00 35.84 4.35
3070 9875 2.294512 ACTAAAGCTTTGCCAGTCAAGC 59.705 45.455 22.02 0.00 35.84 4.01
3071 9876 3.565482 TCACTAAAGCTTTGCCAGTCAAG 59.435 43.478 22.02 10.53 35.84 3.02
3072 9877 3.550820 TCACTAAAGCTTTGCCAGTCAA 58.449 40.909 22.02 5.25 0.00 3.18
3073 9878 3.207265 TCACTAAAGCTTTGCCAGTCA 57.793 42.857 22.02 0.64 0.00 3.41
3074 9879 4.290969 GTTTCACTAAAGCTTTGCCAGTC 58.709 43.478 22.02 2.14 0.00 3.51
3075 9880 3.068165 GGTTTCACTAAAGCTTTGCCAGT 59.932 43.478 22.02 14.08 39.48 4.00
3076 9881 3.068024 TGGTTTCACTAAAGCTTTGCCAG 59.932 43.478 22.02 13.42 42.36 4.85
3077 9882 3.027412 TGGTTTCACTAAAGCTTTGCCA 58.973 40.909 22.02 13.70 42.36 4.92
3078 9883 3.726291 TGGTTTCACTAAAGCTTTGCC 57.274 42.857 22.02 11.59 42.36 4.52
3079 9884 5.558844 GCAAATGGTTTCACTAAAGCTTTGC 60.559 40.000 22.02 20.43 45.72 3.68
3080 9885 5.050159 GGCAAATGGTTTCACTAAAGCTTTG 60.050 40.000 22.02 13.48 42.36 2.77
3081 9886 5.056480 GGCAAATGGTTTCACTAAAGCTTT 58.944 37.500 17.30 17.30 42.36 3.51
3082 9887 4.100808 TGGCAAATGGTTTCACTAAAGCTT 59.899 37.500 0.00 0.00 42.36 3.74
3083 9888 3.640967 TGGCAAATGGTTTCACTAAAGCT 59.359 39.130 0.00 0.00 42.36 3.74
3084 9889 3.740832 GTGGCAAATGGTTTCACTAAAGC 59.259 43.478 0.00 0.00 42.24 3.51
3085 9890 5.200368 AGTGGCAAATGGTTTCACTAAAG 57.800 39.130 0.00 0.00 36.98 1.85
3086 9891 5.127845 TGAAGTGGCAAATGGTTTCACTAAA 59.872 36.000 0.00 0.00 37.66 1.85
3087 9892 4.646945 TGAAGTGGCAAATGGTTTCACTAA 59.353 37.500 0.00 0.00 37.66 2.24
3088 9893 4.211125 TGAAGTGGCAAATGGTTTCACTA 58.789 39.130 0.00 0.00 37.66 2.74
3089 9894 3.030291 TGAAGTGGCAAATGGTTTCACT 58.970 40.909 0.00 0.00 39.97 3.41
3090 9895 3.451141 TGAAGTGGCAAATGGTTTCAC 57.549 42.857 0.00 0.00 0.00 3.18
3091 9896 3.006752 GGATGAAGTGGCAAATGGTTTCA 59.993 43.478 0.00 0.00 0.00 2.69
3092 9897 3.259123 AGGATGAAGTGGCAAATGGTTTC 59.741 43.478 0.00 0.00 0.00 2.78
3093 9898 3.242011 AGGATGAAGTGGCAAATGGTTT 58.758 40.909 0.00 0.00 0.00 3.27
3094 9899 2.893424 AGGATGAAGTGGCAAATGGTT 58.107 42.857 0.00 0.00 0.00 3.67
3095 9900 2.564062 CAAGGATGAAGTGGCAAATGGT 59.436 45.455 0.00 0.00 0.00 3.55
3096 9901 2.093869 CCAAGGATGAAGTGGCAAATGG 60.094 50.000 0.00 0.00 0.00 3.16
3097 9902 2.827322 TCCAAGGATGAAGTGGCAAATG 59.173 45.455 0.00 0.00 32.10 2.32
3098 9903 3.173953 TCCAAGGATGAAGTGGCAAAT 57.826 42.857 0.00 0.00 32.10 2.32
3099 9904 2.673775 TCCAAGGATGAAGTGGCAAA 57.326 45.000 0.00 0.00 32.10 3.68
3100 9905 2.517959 CTTCCAAGGATGAAGTGGCAA 58.482 47.619 0.00 0.00 35.56 4.52
3101 9906 2.205022 CTTCCAAGGATGAAGTGGCA 57.795 50.000 0.00 0.00 35.56 4.92
3113 9918 6.765989 TGGACATACGATTTATTCCTTCCAAG 59.234 38.462 0.00 0.00 0.00 3.61
3114 9919 6.654959 TGGACATACGATTTATTCCTTCCAA 58.345 36.000 0.00 0.00 0.00 3.53
3115 9920 6.241882 TGGACATACGATTTATTCCTTCCA 57.758 37.500 0.00 0.00 0.00 3.53
3116 9921 5.179555 GCTGGACATACGATTTATTCCTTCC 59.820 44.000 0.00 0.00 0.00 3.46
3117 9922 5.992217 AGCTGGACATACGATTTATTCCTTC 59.008 40.000 0.00 0.00 0.00 3.46
3118 9923 5.930135 AGCTGGACATACGATTTATTCCTT 58.070 37.500 0.00 0.00 0.00 3.36
3119 9924 5.552870 AGCTGGACATACGATTTATTCCT 57.447 39.130 0.00 0.00 0.00 3.36
3120 9925 5.992217 AGAAGCTGGACATACGATTTATTCC 59.008 40.000 0.00 0.00 0.00 3.01
3121 9926 7.439655 AGAAGAAGCTGGACATACGATTTATTC 59.560 37.037 0.00 0.00 0.00 1.75
3122 9927 7.275920 AGAAGAAGCTGGACATACGATTTATT 58.724 34.615 0.00 0.00 0.00 1.40
3123 9928 6.821388 AGAAGAAGCTGGACATACGATTTAT 58.179 36.000 0.00 0.00 0.00 1.40
3124 9929 6.096987 AGAGAAGAAGCTGGACATACGATTTA 59.903 38.462 0.00 0.00 0.00 1.40
3125 9930 5.091261 AGAAGAAGCTGGACATACGATTT 57.909 39.130 0.00 0.00 0.00 2.17
3126 9931 4.404073 AGAGAAGAAGCTGGACATACGATT 59.596 41.667 0.00 0.00 0.00 3.34
3127 9932 3.957497 AGAGAAGAAGCTGGACATACGAT 59.043 43.478 0.00 0.00 0.00 3.73
3128 9933 3.129462 CAGAGAAGAAGCTGGACATACGA 59.871 47.826 0.00 0.00 0.00 3.43
3129 9934 3.443037 CAGAGAAGAAGCTGGACATACG 58.557 50.000 0.00 0.00 0.00 3.06
3130 9935 3.194062 GCAGAGAAGAAGCTGGACATAC 58.806 50.000 0.00 0.00 32.83 2.39
3131 9936 2.833943 TGCAGAGAAGAAGCTGGACATA 59.166 45.455 0.00 0.00 32.83 2.29
3132 9937 1.627329 TGCAGAGAAGAAGCTGGACAT 59.373 47.619 0.00 0.00 32.83 3.06
3133 9938 1.051008 TGCAGAGAAGAAGCTGGACA 58.949 50.000 0.00 0.00 32.83 4.02
3134 9939 1.803555 GTTGCAGAGAAGAAGCTGGAC 59.196 52.381 0.00 0.00 32.04 4.02
3135 9940 1.696336 AGTTGCAGAGAAGAAGCTGGA 59.304 47.619 0.00 0.00 32.83 3.86
3136 9941 2.075338 GAGTTGCAGAGAAGAAGCTGG 58.925 52.381 0.00 0.00 32.83 4.85
3137 9942 3.042871 AGAGTTGCAGAGAAGAAGCTG 57.957 47.619 0.00 0.00 35.28 4.24
3138 9943 3.767902 AAGAGTTGCAGAGAAGAAGCT 57.232 42.857 0.00 0.00 0.00 3.74
3139 9944 4.064388 AGAAAGAGTTGCAGAGAAGAAGC 58.936 43.478 0.00 0.00 0.00 3.86
3140 9945 5.540911 AGAGAAAGAGTTGCAGAGAAGAAG 58.459 41.667 0.00 0.00 0.00 2.85
3141 9946 5.069648 TGAGAGAAAGAGTTGCAGAGAAGAA 59.930 40.000 0.00 0.00 0.00 2.52
3142 9947 4.586421 TGAGAGAAAGAGTTGCAGAGAAGA 59.414 41.667 0.00 0.00 0.00 2.87
3143 9948 4.685628 GTGAGAGAAAGAGTTGCAGAGAAG 59.314 45.833 0.00 0.00 0.00 2.85
3144 9949 4.100035 TGTGAGAGAAAGAGTTGCAGAGAA 59.900 41.667 0.00 0.00 0.00 2.87
3145 9950 3.638627 TGTGAGAGAAAGAGTTGCAGAGA 59.361 43.478 0.00 0.00 0.00 3.10
3146 9951 3.987547 TGTGAGAGAAAGAGTTGCAGAG 58.012 45.455 0.00 0.00 0.00 3.35
3147 9952 4.406648 TTGTGAGAGAAAGAGTTGCAGA 57.593 40.909 0.00 0.00 0.00 4.26
3148 9953 4.574013 ACTTTGTGAGAGAAAGAGTTGCAG 59.426 41.667 0.00 0.00 34.94 4.41
3149 9954 4.333649 CACTTTGTGAGAGAAAGAGTTGCA 59.666 41.667 0.00 0.00 35.23 4.08
3150 9955 4.842029 CACTTTGTGAGAGAAAGAGTTGC 58.158 43.478 0.00 0.00 35.23 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.