Multiple sequence alignment - TraesCS2B01G202300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G202300 chr2B 100.000 7217 0 0 1 7217 182017808 182010592 0.000000e+00 13328.0
1 TraesCS2B01G202300 chr2B 97.740 177 3 1 6532 6707 576089490 576089314 3.270000e-78 303.0
2 TraesCS2B01G202300 chr2B 96.685 181 5 1 6528 6707 246361815 246361995 4.230000e-77 300.0
3 TraesCS2B01G202300 chr2D 94.550 5963 162 67 401 6283 128393911 128399790 0.000000e+00 9060.0
4 TraesCS2B01G202300 chr2D 90.926 540 18 8 6698 7217 128400091 128400619 0.000000e+00 697.0
5 TraesCS2B01G202300 chr2D 91.241 274 11 8 6269 6536 128399826 128400092 1.910000e-95 361.0
6 TraesCS2B01G202300 chr2D 95.181 166 4 2 7 170 128393591 128393754 7.180000e-65 259.0
7 TraesCS2B01G202300 chr2A 93.894 5683 179 62 872 6447 135191597 135197218 0.000000e+00 8418.0
8 TraesCS2B01G202300 chr2A 89.762 547 24 8 6698 7217 135197265 135197806 0.000000e+00 671.0
9 TraesCS2B01G202300 chr2A 89.425 539 22 13 341 867 135188263 135188778 0.000000e+00 647.0
10 TraesCS2B01G202300 chr2A 97.740 177 3 1 6526 6702 773064480 773064305 3.270000e-78 303.0
11 TraesCS2B01G202300 chr2A 91.566 166 12 1 7 170 135187912 135188077 2.030000e-55 228.0
12 TraesCS2B01G202300 chr2A 91.071 56 1 1 176 227 135188107 135188162 1.000000e-08 73.1
13 TraesCS2B01G202300 chr7A 99.408 169 1 0 6535 6703 622635121 622634953 2.530000e-79 307.0
14 TraesCS2B01G202300 chr3B 99.408 169 1 0 6534 6702 246303849 246304017 2.530000e-79 307.0
15 TraesCS2B01G202300 chr6B 99.401 167 1 0 6535 6701 703948889 703948723 3.270000e-78 303.0
16 TraesCS2B01G202300 chr3A 97.714 175 3 1 6525 6699 617617630 617617803 4.230000e-77 300.0
17 TraesCS2B01G202300 chr5B 96.667 180 5 1 6523 6701 695969191 695969370 1.520000e-76 298.0
18 TraesCS2B01G202300 chr4B 98.225 169 3 0 6531 6699 130615238 130615406 5.470000e-76 296.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G202300 chr2B 182010592 182017808 7216 True 13328.00 13328 100.0000 1 7217 1 chr2B.!!$R1 7216
1 TraesCS2B01G202300 chr2D 128393591 128400619 7028 False 2594.25 9060 92.9745 7 7217 4 chr2D.!!$F1 7210
2 TraesCS2B01G202300 chr2A 135187912 135197806 9894 False 2007.42 8418 91.1436 7 7217 5 chr2A.!!$F1 7210

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
292 345 0.110486 AAATACCCATGGGCTAGGCG 59.890 55.000 31.73 5.44 39.32 5.52 F
1140 4132 0.108207 GAGCCAGCCTCTGCATGTAT 59.892 55.000 0.00 0.00 41.13 2.29 F
1696 4727 0.179192 CATTCACATTCACACCGCCG 60.179 55.000 0.00 0.00 0.00 6.46 F
1827 4861 0.392863 CCATCGTTGACCAGATGCCA 60.393 55.000 0.00 0.00 41.98 4.92 F
3467 6519 0.473694 TGAAGCCTCAAGACTCCCCA 60.474 55.000 0.00 0.00 0.00 4.96 F
3543 6595 1.350019 CAGATGCTATGGGGATGCTGA 59.650 52.381 0.00 0.00 0.00 4.26 F
4181 7239 1.467920 CAAGGGCTCAATCCAAGTCC 58.532 55.000 0.00 0.00 38.88 3.85 F
5442 8534 0.387367 TCGAAGACGAGCAGTGAAGC 60.387 55.000 0.00 0.00 43.81 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1269 4277 0.249955 GAAGAAGAGGCAGAGCAGCT 59.750 55.0 0.00 0.00 34.17 4.24 R
2970 6022 0.318441 CTTGGTGAGCTCTTCGGTGA 59.682 55.0 16.19 0.00 0.00 4.02 R
3293 6345 0.537371 CTTCTTGGGTTTCAGCCGGT 60.537 55.0 1.90 0.00 38.98 5.28 R
3751 6803 1.108727 TGAAGCCTTGCTGTTGGTGG 61.109 55.0 0.00 0.00 39.62 4.61 R
4311 7369 0.179092 GGGGATGCTGCTTCATTTGC 60.179 55.0 16.12 0.08 0.00 3.68 R
4496 7554 0.321298 TCTGTACCTTTTGGCTCGGC 60.321 55.0 0.00 0.00 45.59 5.54 R
5872 8964 0.529773 TGTCGACCTCTGTGCACAAC 60.530 55.0 21.98 14.37 0.00 3.32 R
7150 10325 0.456995 GCCTTCGTCTTGTCCTCTCG 60.457 60.0 0.00 0.00 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 37 4.140734 TCCATCCATCTTCAGATCTCCTCT 60.141 45.833 0.00 0.00 31.21 3.69
40 43 5.452216 CCATCTTCAGATCTCCTCTTCTGTG 60.452 48.000 0.00 0.00 40.22 3.66
41 44 4.671831 TCTTCAGATCTCCTCTTCTGTGT 58.328 43.478 0.00 0.00 40.22 3.72
90 93 2.675658 AGGCAGAGCTTTTAACCCAA 57.324 45.000 0.00 0.00 0.00 4.12
163 166 2.572191 TCACCGATTCACCGTGATAC 57.428 50.000 1.09 0.00 0.00 2.24
165 168 2.429250 TCACCGATTCACCGTGATACAT 59.571 45.455 1.09 0.00 0.00 2.29
166 169 2.794910 CACCGATTCACCGTGATACATC 59.205 50.000 1.09 2.06 0.00 3.06
211 245 0.732880 CACGGAGAAGTACGCTGGTG 60.733 60.000 0.00 1.87 0.00 4.17
231 265 4.308458 CCGCACAGGTTCCCGTCA 62.308 66.667 0.00 0.00 34.51 4.35
233 267 3.041940 GCACAGGTTCCCGTCACG 61.042 66.667 0.00 0.00 0.00 4.35
234 268 2.732016 CACAGGTTCCCGTCACGA 59.268 61.111 0.00 0.00 0.00 4.35
236 270 1.831286 ACAGGTTCCCGTCACGACT 60.831 57.895 0.00 0.00 0.00 4.18
238 272 1.529948 AGGTTCCCGTCACGACTCA 60.530 57.895 0.00 0.00 0.00 3.41
241 275 1.893335 TTCCCGTCACGACTCACGA 60.893 57.895 0.00 0.00 45.77 4.35
250 303 2.300066 CGACTCACGACAAAGCGCA 61.300 57.895 11.47 0.00 45.77 6.09
255 308 0.249280 TCACGACAAAGCGCAGAGAA 60.249 50.000 11.47 0.00 33.86 2.87
266 319 3.010420 AGCGCAGAGAAAATTTACCTCC 58.990 45.455 11.47 3.33 0.00 4.30
290 343 3.434940 GGTAAATACCCATGGGCTAGG 57.565 52.381 31.73 7.08 40.53 3.02
291 344 2.554564 GGTAAATACCCATGGGCTAGGC 60.555 54.545 31.73 15.99 40.53 3.93
292 345 0.110486 AAATACCCATGGGCTAGGCG 59.890 55.000 31.73 5.44 39.32 5.52
293 346 2.411765 AATACCCATGGGCTAGGCGC 62.412 60.000 31.73 0.00 41.94 6.53
315 368 2.016704 CTCACGGCGTCACTGTCAC 61.017 63.158 10.85 0.00 34.87 3.67
316 369 2.279186 CACGGCGTCACTGTCACA 60.279 61.111 10.85 0.00 34.87 3.58
317 370 2.279252 ACGGCGTCACTGTCACAC 60.279 61.111 6.77 0.00 29.10 3.82
318 371 2.279186 CGGCGTCACTGTCACACA 60.279 61.111 0.00 0.00 0.00 3.72
319 372 2.585869 CGGCGTCACTGTCACACAC 61.586 63.158 0.00 0.00 0.00 3.82
320 373 1.520564 GGCGTCACTGTCACACACA 60.521 57.895 0.00 0.00 0.00 3.72
321 374 1.636340 GCGTCACTGTCACACACAC 59.364 57.895 0.00 0.00 0.00 3.82
322 375 1.081556 GCGTCACTGTCACACACACA 61.082 55.000 0.00 0.00 0.00 3.72
323 376 1.570813 CGTCACTGTCACACACACAT 58.429 50.000 0.00 0.00 0.00 3.21
324 377 1.258720 CGTCACTGTCACACACACATG 59.741 52.381 0.00 0.00 0.00 3.21
325 378 1.599071 GTCACTGTCACACACACATGG 59.401 52.381 0.00 0.00 0.00 3.66
326 379 1.484240 TCACTGTCACACACACATGGA 59.516 47.619 0.00 0.00 0.00 3.41
327 380 2.104622 TCACTGTCACACACACATGGAT 59.895 45.455 0.00 0.00 0.00 3.41
328 381 2.224784 CACTGTCACACACACATGGATG 59.775 50.000 0.00 0.00 0.00 3.51
329 382 1.198408 CTGTCACACACACATGGATGC 59.802 52.381 0.00 0.00 0.00 3.91
330 383 1.237533 GTCACACACACATGGATGCA 58.762 50.000 0.00 0.00 0.00 3.96
331 384 1.069022 GTCACACACACATGGATGCAC 60.069 52.381 0.00 0.00 0.00 4.57
332 385 1.202794 TCACACACACATGGATGCACT 60.203 47.619 0.00 0.00 0.00 4.40
333 386 1.610038 CACACACACATGGATGCACTT 59.390 47.619 0.00 0.00 0.00 3.16
334 387 1.610038 ACACACACATGGATGCACTTG 59.390 47.619 0.00 0.00 0.00 3.16
335 388 0.599558 ACACACATGGATGCACTTGC 59.400 50.000 0.00 0.00 42.50 4.01
336 389 0.455464 CACACATGGATGCACTTGCG 60.455 55.000 0.00 0.00 45.83 4.85
337 390 1.138036 CACATGGATGCACTTGCGG 59.862 57.895 0.00 0.00 45.83 5.69
338 391 1.002257 ACATGGATGCACTTGCGGA 60.002 52.632 0.00 0.00 45.83 5.54
339 392 0.608856 ACATGGATGCACTTGCGGAA 60.609 50.000 0.00 0.00 45.83 4.30
340 393 0.742505 CATGGATGCACTTGCGGAAT 59.257 50.000 0.00 0.00 45.83 3.01
341 394 0.742505 ATGGATGCACTTGCGGAATG 59.257 50.000 0.00 0.00 45.83 2.67
342 395 1.226773 GGATGCACTTGCGGAATGC 60.227 57.895 14.05 14.05 45.83 3.56
351 404 3.654020 GCGGAATGCGGATCCAGC 61.654 66.667 13.41 16.21 36.74 4.85
352 405 2.974698 CGGAATGCGGATCCAGCC 60.975 66.667 20.83 9.77 36.74 4.85
353 406 2.192979 GGAATGCGGATCCAGCCA 59.807 61.111 20.83 11.51 36.92 4.75
354 407 1.895707 GGAATGCGGATCCAGCCAG 60.896 63.158 20.83 3.06 36.92 4.85
355 408 1.146930 GAATGCGGATCCAGCCAGA 59.853 57.895 20.83 7.55 0.00 3.86
356 409 1.153086 AATGCGGATCCAGCCAGAC 60.153 57.895 20.83 0.01 0.00 3.51
357 410 2.615227 AATGCGGATCCAGCCAGACC 62.615 60.000 20.83 0.00 0.00 3.85
358 411 3.474570 GCGGATCCAGCCAGACCT 61.475 66.667 13.41 0.00 0.00 3.85
359 412 2.503061 CGGATCCAGCCAGACCTG 59.497 66.667 13.41 0.00 0.00 4.00
360 413 2.060383 CGGATCCAGCCAGACCTGA 61.060 63.158 13.41 0.00 34.77 3.86
361 414 1.828768 GGATCCAGCCAGACCTGAG 59.171 63.158 6.95 0.00 34.77 3.35
362 415 1.694133 GGATCCAGCCAGACCTGAGG 61.694 65.000 6.95 0.00 34.77 3.86
363 416 0.980231 GATCCAGCCAGACCTGAGGT 60.980 60.000 2.41 2.41 39.44 3.85
364 417 0.339859 ATCCAGCCAGACCTGAGGTA 59.660 55.000 2.97 0.00 35.25 3.08
365 418 0.339859 TCCAGCCAGACCTGAGGTAT 59.660 55.000 2.97 0.00 35.25 2.73
366 419 1.573857 TCCAGCCAGACCTGAGGTATA 59.426 52.381 2.97 0.00 35.25 1.47
367 420 2.180086 TCCAGCCAGACCTGAGGTATAT 59.820 50.000 2.97 0.00 35.25 0.86
368 421 2.564947 CCAGCCAGACCTGAGGTATATC 59.435 54.545 2.97 0.00 35.25 1.63
369 422 2.230025 CAGCCAGACCTGAGGTATATCG 59.770 54.545 2.97 0.00 35.25 2.92
370 423 2.158445 AGCCAGACCTGAGGTATATCGT 60.158 50.000 2.97 0.00 35.25 3.73
371 424 3.074094 AGCCAGACCTGAGGTATATCGTA 59.926 47.826 2.97 0.00 35.25 3.43
372 425 4.017808 GCCAGACCTGAGGTATATCGTAT 58.982 47.826 2.97 0.00 35.25 3.06
373 426 4.142359 GCCAGACCTGAGGTATATCGTATG 60.142 50.000 2.97 0.00 35.25 2.39
374 427 4.399618 CCAGACCTGAGGTATATCGTATGG 59.600 50.000 2.97 0.00 35.25 2.74
375 428 4.017808 AGACCTGAGGTATATCGTATGGC 58.982 47.826 2.97 0.00 35.25 4.40
376 429 2.753452 ACCTGAGGTATATCGTATGGCG 59.247 50.000 0.07 0.00 36.52 5.69
377 430 2.099263 CCTGAGGTATATCGTATGGCGG 59.901 54.545 0.00 0.00 41.72 6.13
378 431 3.014623 CTGAGGTATATCGTATGGCGGA 58.985 50.000 0.00 0.00 41.72 5.54
379 432 3.423749 TGAGGTATATCGTATGGCGGAA 58.576 45.455 0.00 0.00 41.72 4.30
380 433 3.442625 TGAGGTATATCGTATGGCGGAAG 59.557 47.826 0.00 0.00 41.72 3.46
425 539 7.255035 GCGTATACGTATATGTATCCCAGTCAT 60.255 40.741 27.39 0.00 42.22 3.06
455 569 1.268625 CGTATACGTATGGCAGCAGGA 59.731 52.381 18.37 0.00 34.11 3.86
594 711 3.173965 CCACCCATTCTATCCTATCCGT 58.826 50.000 0.00 0.00 0.00 4.69
595 712 3.195825 CCACCCATTCTATCCTATCCGTC 59.804 52.174 0.00 0.00 0.00 4.79
613 734 0.902984 TCGAGGCCAGCAAGAACCTA 60.903 55.000 5.01 0.00 30.95 3.08
614 735 0.460987 CGAGGCCAGCAAGAACCTAG 60.461 60.000 5.01 0.00 30.95 3.02
750 876 4.481870 GCGTCGTCACGGGAATTA 57.518 55.556 0.00 0.00 46.80 1.40
814 952 0.878961 GACGAAAACTCCTGTGCGGT 60.879 55.000 0.00 0.00 0.00 5.68
835 973 2.740055 GTGCGGGCTGACACAGAG 60.740 66.667 13.62 0.00 36.77 3.35
1105 4097 2.038975 CCCGTCCTCTCCCCTCAA 59.961 66.667 0.00 0.00 0.00 3.02
1140 4132 0.108207 GAGCCAGCCTCTGCATGTAT 59.892 55.000 0.00 0.00 41.13 2.29
1245 4253 0.754217 GCACCTGCATCCATCCACAT 60.754 55.000 0.00 0.00 41.59 3.21
1251 4259 1.237285 GCATCCATCCACATACCGCC 61.237 60.000 0.00 0.00 0.00 6.13
1254 4262 2.108976 CATCCACATACCGCCGCT 59.891 61.111 0.00 0.00 0.00 5.52
1255 4263 1.365999 CATCCACATACCGCCGCTA 59.634 57.895 0.00 0.00 0.00 4.26
1256 4264 0.667487 CATCCACATACCGCCGCTAG 60.667 60.000 0.00 0.00 0.00 3.42
1257 4265 2.436087 ATCCACATACCGCCGCTAGC 62.436 60.000 4.06 4.06 38.52 3.42
1258 4266 2.417516 CACATACCGCCGCTAGCT 59.582 61.111 13.93 0.00 40.39 3.32
1259 4267 1.227263 CACATACCGCCGCTAGCTT 60.227 57.895 13.93 0.00 40.39 3.74
1260 4268 1.067582 ACATACCGCCGCTAGCTTC 59.932 57.895 13.93 3.03 40.39 3.86
1261 4269 1.364171 CATACCGCCGCTAGCTTCT 59.636 57.895 13.93 0.00 40.39 2.85
1262 4270 0.249489 CATACCGCCGCTAGCTTCTT 60.249 55.000 13.93 0.00 40.39 2.52
1263 4271 0.249489 ATACCGCCGCTAGCTTCTTG 60.249 55.000 13.93 0.00 40.39 3.02
1264 4272 2.901051 TACCGCCGCTAGCTTCTTGC 62.901 60.000 13.93 6.57 40.39 4.01
1265 4273 3.567797 CGCCGCTAGCTTCTTGCC 61.568 66.667 13.93 0.00 44.23 4.52
1266 4274 3.205536 GCCGCTAGCTTCTTGCCC 61.206 66.667 13.93 0.00 44.23 5.36
1267 4275 2.892425 CCGCTAGCTTCTTGCCCG 60.892 66.667 13.93 0.00 44.23 6.13
1268 4276 3.567797 CGCTAGCTTCTTGCCCGC 61.568 66.667 13.93 0.00 44.23 6.13
1269 4277 2.436646 GCTAGCTTCTTGCCCGCA 60.437 61.111 7.70 0.00 44.23 5.69
1270 4278 2.467826 GCTAGCTTCTTGCCCGCAG 61.468 63.158 7.70 0.00 44.23 5.18
1271 4279 2.436646 TAGCTTCTTGCCCGCAGC 60.437 61.111 0.00 0.00 44.23 5.25
1272 4280 2.866085 CTAGCTTCTTGCCCGCAGCT 62.866 60.000 0.00 6.43 44.23 4.24
1273 4281 4.112341 GCTTCTTGCCCGCAGCTG 62.112 66.667 10.11 10.11 44.23 4.24
1274 4282 4.112341 CTTCTTGCCCGCAGCTGC 62.112 66.667 29.12 29.12 44.23 5.25
1275 4283 4.648626 TTCTTGCCCGCAGCTGCT 62.649 61.111 34.22 0.00 44.23 4.24
1328 4336 5.044767 AGAACCTTCTCCTGCTTTTGCTAC 61.045 45.833 0.00 0.00 38.71 3.58
1335 4343 4.716003 GCTTTTGCTACCTCCGGT 57.284 55.556 0.00 0.00 43.35 5.28
1336 4344 2.467962 GCTTTTGCTACCTCCGGTC 58.532 57.895 0.00 0.00 43.35 4.79
1428 4441 1.211709 GGCGTTTGATCGGTTTGGG 59.788 57.895 0.00 0.00 0.00 4.12
1438 4451 4.011517 GGTTTGGGAGCGTCGGGA 62.012 66.667 0.00 0.00 0.00 5.14
1659 4690 2.286365 TTCCATCGTTGGCTTTCCTT 57.714 45.000 7.70 0.00 43.29 3.36
1666 4697 2.569853 TCGTTGGCTTTCCTTCCATCTA 59.430 45.455 0.00 0.00 31.54 1.98
1692 4723 3.763360 TCCATTCCATTCACATTCACACC 59.237 43.478 0.00 0.00 0.00 4.16
1696 4727 0.179192 CATTCACATTCACACCGCCG 60.179 55.000 0.00 0.00 0.00 6.46
1706 4737 3.506096 CACCGCCGTCGAGCTCTA 61.506 66.667 12.85 0.00 38.10 2.43
1748 4782 4.737353 ACGGTTTCATCTTCGGTTTAAC 57.263 40.909 0.00 0.00 0.00 2.01
1761 4795 3.316308 TCGGTTTAACTAGCGGATAGTCC 59.684 47.826 6.37 2.84 44.26 3.85
1824 4858 1.012086 CTGCCATCGTTGACCAGATG 58.988 55.000 7.81 0.00 42.71 2.90
1825 4859 1.026182 TGCCATCGTTGACCAGATGC 61.026 55.000 0.00 0.00 41.98 3.91
1826 4860 1.718757 GCCATCGTTGACCAGATGCC 61.719 60.000 0.00 0.00 41.98 4.40
1827 4861 0.392863 CCATCGTTGACCAGATGCCA 60.393 55.000 0.00 0.00 41.98 4.92
1884 4918 3.066621 AGAAAGATTGCTTGTTGCGTTCA 59.933 39.130 0.00 0.00 46.63 3.18
1927 4962 1.922447 TGCCATCCAGAGTTGGGTAAT 59.078 47.619 0.00 0.00 45.10 1.89
1929 4964 3.525609 TGCCATCCAGAGTTGGGTAATAA 59.474 43.478 0.00 0.00 45.10 1.40
1930 4965 3.883489 GCCATCCAGAGTTGGGTAATAAC 59.117 47.826 0.00 0.00 45.10 1.89
1931 4966 4.627741 GCCATCCAGAGTTGGGTAATAACA 60.628 45.833 0.00 0.00 45.10 2.41
1933 4968 5.590259 CCATCCAGAGTTGGGTAATAACAAG 59.410 44.000 0.00 0.00 45.10 3.16
1934 4969 5.174037 TCCAGAGTTGGGTAATAACAAGG 57.826 43.478 0.00 0.00 45.10 3.61
1935 4970 4.600111 TCCAGAGTTGGGTAATAACAAGGT 59.400 41.667 0.00 0.00 45.10 3.50
1936 4971 4.941873 CCAGAGTTGGGTAATAACAAGGTC 59.058 45.833 0.00 0.00 41.05 3.85
1937 4972 4.941873 CAGAGTTGGGTAATAACAAGGTCC 59.058 45.833 0.00 0.00 0.00 4.46
1938 4973 4.600111 AGAGTTGGGTAATAACAAGGTCCA 59.400 41.667 0.00 0.00 0.00 4.02
1943 4990 6.057321 TGGGTAATAACAAGGTCCAGTAAG 57.943 41.667 0.00 0.00 0.00 2.34
1981 5029 7.764141 AATGGTTGGTAAATAAAACGGTACT 57.236 32.000 0.00 0.00 0.00 2.73
2008 5056 3.317993 TGGTAGAAACTTTCTTTGCTGCC 59.682 43.478 9.33 0.00 41.14 4.85
2040 5088 7.173032 ACGGTAGATTAGATTCCCAAAGTTTT 58.827 34.615 0.00 0.00 0.00 2.43
2041 5089 7.668469 ACGGTAGATTAGATTCCCAAAGTTTTT 59.332 33.333 0.00 0.00 0.00 1.94
2060 5108 8.911918 AGTTTTTAGGTTGGAAAACAAGTTTT 57.088 26.923 10.43 10.43 44.25 2.43
2061 5109 8.779303 AGTTTTTAGGTTGGAAAACAAGTTTTG 58.221 29.630 14.97 0.00 44.25 2.44
2064 5112 8.541133 TTTAGGTTGGAAAACAAGTTTTGAAG 57.459 30.769 14.97 0.00 42.26 3.02
2067 5115 6.818142 AGGTTGGAAAACAAGTTTTGAAGATG 59.182 34.615 14.97 0.00 42.26 2.90
2075 5123 7.704789 AACAAGTTTTGAAGATGCTGATTTC 57.295 32.000 0.00 0.00 0.00 2.17
2136 5184 3.969899 AGCTCAAAAAGTTTGCTGCTAC 58.030 40.909 14.69 0.00 32.32 3.58
2142 5190 4.718940 AAAAGTTTGCTGCTACAACTGT 57.281 36.364 11.45 5.40 0.00 3.55
2308 5356 2.226330 GGTGACAGGCAATTGTGTGTA 58.774 47.619 12.95 0.00 0.00 2.90
2312 5360 4.917415 GTGACAGGCAATTGTGTGTATTTC 59.083 41.667 12.95 4.20 0.00 2.17
2697 5749 0.952497 ATGTTCCAGTGCAGTGCTCG 60.952 55.000 17.60 9.05 0.00 5.03
2846 5898 1.629043 TGACCGAGAACAGTAGCCTT 58.371 50.000 0.00 0.00 0.00 4.35
2849 5901 1.067776 ACCGAGAACAGTAGCCTTTCG 60.068 52.381 0.00 0.00 0.00 3.46
2891 5943 4.040829 TCTTGTTCTTCCTCTTCATGCTCA 59.959 41.667 0.00 0.00 0.00 4.26
2947 5999 2.025155 ACAGGAGCTACCGTACATCAG 58.975 52.381 0.00 0.00 44.74 2.90
2970 6022 1.343069 AGAACTCTTTCCGCAGAGGT 58.657 50.000 4.05 0.00 44.04 3.85
3324 6376 1.172175 CCAAGAAGCCAAGAAGCCTC 58.828 55.000 0.00 0.00 0.00 4.70
3440 6492 3.433882 GGAGAACCGATGACTCTCTCCTA 60.434 52.174 8.80 0.00 45.86 2.94
3467 6519 0.473694 TGAAGCCTCAAGACTCCCCA 60.474 55.000 0.00 0.00 0.00 4.96
3543 6595 1.350019 CAGATGCTATGGGGATGCTGA 59.650 52.381 0.00 0.00 0.00 4.26
3745 6797 4.527583 GCAGCAGGAGAGAGGCGG 62.528 72.222 0.00 0.00 0.00 6.13
3827 6879 6.384258 GCATCTCTCTATGCCGATATAGAA 57.616 41.667 9.05 0.00 45.31 2.10
3854 6906 1.827399 TTGGTGGGCTCGAGTTCTCC 61.827 60.000 15.13 15.74 0.00 3.71
4181 7239 1.467920 CAAGGGCTCAATCCAAGTCC 58.532 55.000 0.00 0.00 38.88 3.85
4191 7249 1.843368 ATCCAAGTCCGACGAACCTA 58.157 50.000 0.00 0.00 0.00 3.08
4218 7276 4.544689 CGAGCTCGCCGAGACCTG 62.545 72.222 25.07 0.00 0.00 4.00
4311 7369 2.555757 CCAAAGTCTCCAAGCAAGAAGG 59.444 50.000 0.00 0.00 0.00 3.46
4496 7554 3.341857 TCGTTCATTGACCCAAAAACG 57.658 42.857 17.10 17.10 42.39 3.60
4785 7852 5.402997 TGCATATTCCTTTGCAATGACAA 57.597 34.783 13.58 6.54 45.30 3.18
4851 7921 7.605309 CAGCTGTAAGATCAATGGCATAATAGA 59.395 37.037 5.25 0.00 34.07 1.98
4974 8044 2.576191 TGCATTTAAGGCTACCAGAGGT 59.424 45.455 2.72 0.00 40.16 3.85
5059 8147 2.762472 CTGAACAGTGCTATTTTCGCG 58.238 47.619 0.00 0.00 0.00 5.87
5143 8231 1.482593 GCTAGTGTAGATGTGCCCACT 59.517 52.381 0.00 0.00 40.92 4.00
5213 8303 6.678878 TGTAGACAGAACAGTACAGTGAATC 58.321 40.000 0.00 0.00 0.00 2.52
5442 8534 0.387367 TCGAAGACGAGCAGTGAAGC 60.387 55.000 0.00 0.00 43.81 3.86
5863 8955 1.636148 AGTTAAGTGGGTGGCGTCTA 58.364 50.000 0.00 0.00 0.00 2.59
5872 8964 1.473434 GGGTGGCGTCTATTCAAGGAG 60.473 57.143 0.00 0.00 0.00 3.69
5908 9000 2.303175 GACAGGCTCTTATCCGAGAGT 58.697 52.381 4.08 0.00 44.03 3.24
5953 9045 4.708177 AGGATGAGGATGAAAACATACCG 58.292 43.478 0.00 0.00 0.00 4.02
6278 9421 2.432628 GAACACTGGTCTCGCGGG 60.433 66.667 6.13 1.01 0.00 6.13
6288 9431 2.434884 CTCGCGGGCATTGACACT 60.435 61.111 6.13 0.00 0.00 3.55
6292 9435 1.148157 CGCGGGCATTGACACTAGAG 61.148 60.000 0.00 0.00 0.00 2.43
6311 9454 4.006319 AGAGGAAGCAAGCAGTTGAATAC 58.994 43.478 0.00 0.00 35.46 1.89
6380 9525 9.601217 GGTGTTACATACTTACTTTGATCAGAT 57.399 33.333 0.00 0.00 0.00 2.90
6519 9668 2.890109 GCATGCCAGGAAGATCGCG 61.890 63.158 6.36 0.00 0.00 5.87
6526 9675 1.016130 CAGGAAGATCGCGCACTGTT 61.016 55.000 8.75 0.00 0.00 3.16
6527 9676 0.530744 AGGAAGATCGCGCACTGTTA 59.469 50.000 8.75 0.00 0.00 2.41
6530 9679 2.471743 GGAAGATCGCGCACTGTTATAC 59.528 50.000 8.75 0.00 0.00 1.47
6531 9680 3.372954 GAAGATCGCGCACTGTTATACT 58.627 45.455 8.75 0.00 0.00 2.12
6532 9681 4.534168 GAAGATCGCGCACTGTTATACTA 58.466 43.478 8.75 0.00 0.00 1.82
6533 9682 3.886549 AGATCGCGCACTGTTATACTAC 58.113 45.455 8.75 0.00 0.00 2.73
6534 9683 3.564644 AGATCGCGCACTGTTATACTACT 59.435 43.478 8.75 0.00 0.00 2.57
6535 9684 4.753610 AGATCGCGCACTGTTATACTACTA 59.246 41.667 8.75 0.00 0.00 1.82
6536 9685 4.201208 TCGCGCACTGTTATACTACTAC 57.799 45.455 8.75 0.00 0.00 2.73
6537 9686 3.873361 TCGCGCACTGTTATACTACTACT 59.127 43.478 8.75 0.00 0.00 2.57
6538 9687 4.025396 TCGCGCACTGTTATACTACTACTC 60.025 45.833 8.75 0.00 0.00 2.59
6539 9688 4.535116 GCGCACTGTTATACTACTACTCC 58.465 47.826 0.30 0.00 0.00 3.85
6540 9689 4.556302 GCGCACTGTTATACTACTACTCCC 60.556 50.000 0.30 0.00 0.00 4.30
6541 9690 4.820716 CGCACTGTTATACTACTACTCCCT 59.179 45.833 0.00 0.00 0.00 4.20
6542 9691 5.049543 CGCACTGTTATACTACTACTCCCTC 60.050 48.000 0.00 0.00 0.00 4.30
6543 9692 5.241285 GCACTGTTATACTACTACTCCCTCC 59.759 48.000 0.00 0.00 0.00 4.30
6544 9693 5.469421 CACTGTTATACTACTACTCCCTCCG 59.531 48.000 0.00 0.00 0.00 4.63
6545 9694 5.131809 ACTGTTATACTACTACTCCCTCCGT 59.868 44.000 0.00 0.00 0.00 4.69
6546 9695 6.006275 TGTTATACTACTACTCCCTCCGTT 57.994 41.667 0.00 0.00 0.00 4.44
6547 9696 6.058183 TGTTATACTACTACTCCCTCCGTTC 58.942 44.000 0.00 0.00 0.00 3.95
6548 9697 2.433662 ACTACTACTCCCTCCGTTCC 57.566 55.000 0.00 0.00 0.00 3.62
6549 9698 1.921748 ACTACTACTCCCTCCGTTCCT 59.078 52.381 0.00 0.00 0.00 3.36
6550 9699 3.118531 ACTACTACTCCCTCCGTTCCTA 58.881 50.000 0.00 0.00 0.00 2.94
6551 9700 3.525199 ACTACTACTCCCTCCGTTCCTAA 59.475 47.826 0.00 0.00 0.00 2.69
6552 9701 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
6553 9702 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
6554 9703 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
6555 9704 5.522641 ACTACTCCCTCCGTTCCTAAATAA 58.477 41.667 0.00 0.00 0.00 1.40
6556 9705 6.141790 ACTACTCCCTCCGTTCCTAAATAAT 58.858 40.000 0.00 0.00 0.00 1.28
6557 9706 5.970501 ACTCCCTCCGTTCCTAAATAATT 57.029 39.130 0.00 0.00 0.00 1.40
6558 9707 5.681639 ACTCCCTCCGTTCCTAAATAATTG 58.318 41.667 0.00 0.00 0.00 2.32
6559 9708 5.191124 ACTCCCTCCGTTCCTAAATAATTGT 59.809 40.000 0.00 0.00 0.00 2.71
6560 9709 5.677567 TCCCTCCGTTCCTAAATAATTGTC 58.322 41.667 0.00 0.00 0.00 3.18
6561 9710 5.427481 TCCCTCCGTTCCTAAATAATTGTCT 59.573 40.000 0.00 0.00 0.00 3.41
6562 9711 6.069847 TCCCTCCGTTCCTAAATAATTGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
6563 9712 6.602009 CCCTCCGTTCCTAAATAATTGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
6564 9713 7.201705 CCCTCCGTTCCTAAATAATTGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
6565 9714 7.553044 CCTCCGTTCCTAAATAATTGTCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
6566 9715 9.595823 CTCCGTTCCTAAATAATTGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
6567 9716 9.595823 TCCGTTCCTAAATAATTGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
6568 9717 8.336080 CCGTTCCTAAATAATTGTCTTTCTAGC 58.664 37.037 0.00 0.00 0.00 3.42
6569 9718 8.336080 CGTTCCTAAATAATTGTCTTTCTAGCC 58.664 37.037 0.00 0.00 0.00 3.93
6570 9719 9.174166 GTTCCTAAATAATTGTCTTTCTAGCCA 57.826 33.333 0.00 0.00 0.00 4.75
6571 9720 9.920946 TTCCTAAATAATTGTCTTTCTAGCCAT 57.079 29.630 0.00 0.00 0.00 4.40
6572 9721 9.561069 TCCTAAATAATTGTCTTTCTAGCCATC 57.439 33.333 0.00 0.00 0.00 3.51
6573 9722 9.566432 CCTAAATAATTGTCTTTCTAGCCATCT 57.434 33.333 0.00 0.00 0.00 2.90
6576 9725 9.466497 AAATAATTGTCTTTCTAGCCATCTCAA 57.534 29.630 0.00 0.00 0.00 3.02
6577 9726 9.466497 AATAATTGTCTTTCTAGCCATCTCAAA 57.534 29.630 0.00 0.00 0.00 2.69
6578 9727 7.951347 AATTGTCTTTCTAGCCATCTCAAAT 57.049 32.000 0.00 0.00 0.00 2.32
6579 9728 6.748333 TTGTCTTTCTAGCCATCTCAAATG 57.252 37.500 0.00 0.00 0.00 2.32
6580 9729 5.188434 TGTCTTTCTAGCCATCTCAAATGG 58.812 41.667 0.00 0.00 41.99 3.16
6581 9730 5.045651 TGTCTTTCTAGCCATCTCAAATGGA 60.046 40.000 8.23 0.00 41.64 3.41
6582 9731 5.295540 GTCTTTCTAGCCATCTCAAATGGAC 59.704 44.000 8.23 0.19 41.64 4.02
6583 9732 5.190528 TCTTTCTAGCCATCTCAAATGGACT 59.809 40.000 8.23 7.12 41.64 3.85
6584 9733 6.384015 TCTTTCTAGCCATCTCAAATGGACTA 59.616 38.462 8.23 7.79 41.64 2.59
6585 9734 5.537300 TCTAGCCATCTCAAATGGACTAC 57.463 43.478 8.23 0.00 41.64 2.73
6586 9735 4.962362 TCTAGCCATCTCAAATGGACTACA 59.038 41.667 8.23 0.00 41.64 2.74
6587 9736 4.574674 AGCCATCTCAAATGGACTACAA 57.425 40.909 8.23 0.00 41.64 2.41
6588 9737 4.265073 AGCCATCTCAAATGGACTACAAC 58.735 43.478 8.23 0.00 41.64 3.32
6589 9738 4.009675 GCCATCTCAAATGGACTACAACA 58.990 43.478 8.23 0.00 41.64 3.33
6590 9739 4.641989 GCCATCTCAAATGGACTACAACAT 59.358 41.667 8.23 0.00 41.64 2.71
6591 9740 5.822519 GCCATCTCAAATGGACTACAACATA 59.177 40.000 8.23 0.00 41.64 2.29
6592 9741 6.238484 GCCATCTCAAATGGACTACAACATAC 60.238 42.308 8.23 0.00 41.64 2.39
6593 9742 6.018751 CCATCTCAAATGGACTACAACATACG 60.019 42.308 0.00 0.00 41.64 3.06
6594 9743 5.416083 TCTCAAATGGACTACAACATACGG 58.584 41.667 0.00 0.00 0.00 4.02
6595 9744 5.186215 TCTCAAATGGACTACAACATACGGA 59.814 40.000 0.00 0.00 0.00 4.69
6596 9745 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
6597 9746 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
6599 9748 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
6600 9749 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
6615 9764 9.692749 ATACGGATGTATGTAGACATGTTTTAG 57.307 33.333 0.00 0.00 40.18 1.85
6616 9765 7.778083 ACGGATGTATGTAGACATGTTTTAGA 58.222 34.615 0.00 0.00 40.18 2.10
6617 9766 7.921214 ACGGATGTATGTAGACATGTTTTAGAG 59.079 37.037 0.00 0.00 40.18 2.43
6618 9767 7.921214 CGGATGTATGTAGACATGTTTTAGAGT 59.079 37.037 0.00 0.00 40.18 3.24
6619 9768 9.035607 GGATGTATGTAGACATGTTTTAGAGTG 57.964 37.037 0.00 0.00 40.18 3.51
6620 9769 9.587772 GATGTATGTAGACATGTTTTAGAGTGT 57.412 33.333 0.00 0.00 40.18 3.55
6626 9775 9.856488 TGTAGACATGTTTTAGAGTGTAGATTC 57.144 33.333 0.00 0.00 0.00 2.52
6627 9776 9.856488 GTAGACATGTTTTAGAGTGTAGATTCA 57.144 33.333 0.00 0.00 0.00 2.57
6628 9777 8.764524 AGACATGTTTTAGAGTGTAGATTCAC 57.235 34.615 0.00 0.00 38.46 3.18
6639 9788 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
6640 9789 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
6641 9790 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
6642 9791 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
6643 9792 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
6644 9793 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
6645 9794 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
6646 9795 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
6647 9796 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
6648 9797 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
6649 9798 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
6650 9799 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
6651 9800 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
6652 9801 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
6653 9802 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
6654 9803 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
6655 9804 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
6656 9805 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
6657 9806 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
6658 9807 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
6659 9808 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
6660 9809 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
6661 9810 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
6662 9811 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
6663 9812 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
6664 9813 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
6665 9814 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
6666 9815 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
6667 9816 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
6668 9817 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
6669 9818 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
6670 9819 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
6671 9820 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
6672 9821 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
6673 9822 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
6674 9823 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
6675 9824 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
6676 9825 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
6677 9826 9.566432 ACTTGTTGAAATCTCTAGAAAGACAAT 57.434 29.630 0.00 0.00 0.00 2.71
6690 9839 9.595823 TCTAGAAAGACAATTATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
6691 9840 9.595823 CTAGAAAGACAATTATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
6692 9841 8.494016 AGAAAGACAATTATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
6693 9842 7.553044 AGAAAGACAATTATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
6694 9843 5.681639 AGACAATTATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
6695 9844 5.427481 AGACAATTATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
6696 9845 5.681639 ACAATTATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
6759 9909 3.070018 CACTAGAAGTTTCAGGCCTGTG 58.930 50.000 31.58 14.86 0.00 3.66
6786 9936 4.037923 AGCTCCCAAAACTGTTTGTACATG 59.962 41.667 6.53 0.93 42.26 3.21
6825 9975 3.782443 CCCTACCCCCACACTCGC 61.782 72.222 0.00 0.00 0.00 5.03
6884 10034 9.146984 CTCACAGTAAATGAATTGATGCATTTT 57.853 29.630 13.63 0.00 40.68 1.82
6949 10099 2.159627 CCTGTACAGGCGAAAATCACAC 59.840 50.000 28.48 0.00 42.44 3.82
6950 10100 2.147958 TGTACAGGCGAAAATCACACC 58.852 47.619 0.00 0.00 0.00 4.16
7050 10207 1.820906 CCGGACACATGATGCAGGG 60.821 63.158 0.00 0.00 0.00 4.45
7150 10325 0.673956 GAGGGGACAGGCGTTTCTTC 60.674 60.000 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.479006 TGAAGATGGATGGATGGATGTATTC 58.521 40.000 0.00 0.00 0.00 1.75
1 2 6.273965 TCTGAAGATGGATGGATGGATGTATT 59.726 38.462 0.00 0.00 0.00 1.89
2 3 5.789054 TCTGAAGATGGATGGATGGATGTAT 59.211 40.000 0.00 0.00 0.00 2.29
3 4 5.157395 TCTGAAGATGGATGGATGGATGTA 58.843 41.667 0.00 0.00 0.00 2.29
4 5 3.978672 TCTGAAGATGGATGGATGGATGT 59.021 43.478 0.00 0.00 0.00 3.06
5 6 4.635699 TCTGAAGATGGATGGATGGATG 57.364 45.455 0.00 0.00 0.00 3.51
34 37 1.303236 CCCGCCATCCAACACAGAA 60.303 57.895 0.00 0.00 0.00 3.02
40 43 1.153249 TCGATTCCCGCCATCCAAC 60.153 57.895 0.00 0.00 38.37 3.77
41 44 1.146041 CTCGATTCCCGCCATCCAA 59.854 57.895 0.00 0.00 38.37 3.53
90 93 1.341383 GGACCTGGATTCTTGCATGGT 60.341 52.381 0.00 0.00 31.05 3.55
128 131 1.355971 GTGATCGCTTTTACTGCCGA 58.644 50.000 0.00 0.00 0.00 5.54
193 215 1.585006 CACCAGCGTACTTCTCCGT 59.415 57.895 0.00 0.00 0.00 4.69
194 216 1.805945 GCACCAGCGTACTTCTCCG 60.806 63.158 0.00 0.00 0.00 4.63
196 218 1.014564 GGTGCACCAGCGTACTTCTC 61.015 60.000 31.23 0.00 46.23 2.87
197 219 1.004918 GGTGCACCAGCGTACTTCT 60.005 57.895 31.23 0.00 46.23 2.85
198 220 3.562635 GGTGCACCAGCGTACTTC 58.437 61.111 31.23 0.00 46.23 3.01
228 262 0.503117 GCTTTGTCGTGAGTCGTGAC 59.497 55.000 7.44 7.44 40.80 3.67
229 263 0.933047 CGCTTTGTCGTGAGTCGTGA 60.933 55.000 0.00 0.00 40.80 4.35
230 264 1.482955 CGCTTTGTCGTGAGTCGTG 59.517 57.895 0.00 0.00 40.80 4.35
231 265 2.300787 GCGCTTTGTCGTGAGTCGT 61.301 57.895 0.00 0.00 40.80 4.34
233 267 0.939577 TCTGCGCTTTGTCGTGAGTC 60.940 55.000 9.73 0.00 0.00 3.36
234 268 0.941463 CTCTGCGCTTTGTCGTGAGT 60.941 55.000 9.73 0.00 32.28 3.41
236 270 0.249280 TTCTCTGCGCTTTGTCGTGA 60.249 50.000 9.73 0.00 0.00 4.35
238 272 1.295792 TTTTCTCTGCGCTTTGTCGT 58.704 45.000 9.73 0.00 0.00 4.34
240 274 4.617223 GGTAAATTTTCTCTGCGCTTTGTC 59.383 41.667 9.73 0.00 0.00 3.18
241 275 4.278419 AGGTAAATTTTCTCTGCGCTTTGT 59.722 37.500 9.73 0.00 0.00 2.83
250 303 3.923425 ACCCCAGGAGGTAAATTTTCTCT 59.077 43.478 15.94 4.86 38.79 3.10
286 339 4.914420 CCGTGAGAGCGCGCCTAG 62.914 72.222 30.33 17.29 46.11 3.02
294 347 2.807045 CAGTGACGCCGTGAGAGC 60.807 66.667 0.00 0.00 0.00 4.09
295 348 1.442857 GACAGTGACGCCGTGAGAG 60.443 63.158 0.00 0.00 0.00 3.20
296 349 2.190841 TGACAGTGACGCCGTGAGA 61.191 57.895 0.00 0.00 0.00 3.27
297 350 2.016704 GTGACAGTGACGCCGTGAG 61.017 63.158 0.00 0.00 0.00 3.51
298 351 2.027024 GTGACAGTGACGCCGTGA 59.973 61.111 0.00 0.00 0.00 4.35
299 352 2.279186 TGTGACAGTGACGCCGTG 60.279 61.111 0.00 0.00 0.00 4.94
315 368 1.667756 GCAAGTGCATCCATGTGTGTG 60.668 52.381 0.00 0.00 41.59 3.82
316 369 0.599558 GCAAGTGCATCCATGTGTGT 59.400 50.000 0.00 0.00 41.59 3.72
317 370 0.455464 CGCAAGTGCATCCATGTGTG 60.455 55.000 3.87 0.00 42.21 3.82
318 371 1.588824 CCGCAAGTGCATCCATGTGT 61.589 55.000 3.87 0.00 42.21 3.72
319 372 1.138036 CCGCAAGTGCATCCATGTG 59.862 57.895 3.87 0.00 42.21 3.21
320 373 0.608856 TTCCGCAAGTGCATCCATGT 60.609 50.000 3.87 0.00 42.21 3.21
321 374 0.742505 ATTCCGCAAGTGCATCCATG 59.257 50.000 3.87 0.00 42.21 3.66
322 375 0.742505 CATTCCGCAAGTGCATCCAT 59.257 50.000 3.87 0.00 42.21 3.41
323 376 1.936436 GCATTCCGCAAGTGCATCCA 61.936 55.000 3.87 0.00 42.21 3.41
324 377 1.226773 GCATTCCGCAAGTGCATCC 60.227 57.895 3.87 0.00 42.21 3.51
325 378 1.584483 CGCATTCCGCAAGTGCATC 60.584 57.895 3.87 0.00 42.60 3.91
326 379 2.486504 CGCATTCCGCAAGTGCAT 59.513 55.556 3.87 0.00 42.60 3.96
327 380 3.736100 CCGCATTCCGCAAGTGCA 61.736 61.111 3.87 0.00 42.60 4.57
328 381 2.652893 GATCCGCATTCCGCAAGTGC 62.653 60.000 0.00 0.00 42.60 4.40
329 382 1.353103 GATCCGCATTCCGCAAGTG 59.647 57.895 0.00 0.00 42.60 3.16
330 383 1.819632 GGATCCGCATTCCGCAAGT 60.820 57.895 0.00 0.00 42.60 3.16
331 384 1.779025 CTGGATCCGCATTCCGCAAG 61.779 60.000 7.39 0.00 42.60 4.01
332 385 1.819208 CTGGATCCGCATTCCGCAA 60.819 57.895 7.39 0.00 42.60 4.85
333 386 2.203056 CTGGATCCGCATTCCGCA 60.203 61.111 7.39 0.00 42.60 5.69
334 387 3.654020 GCTGGATCCGCATTCCGC 61.654 66.667 19.44 5.37 35.94 5.54
335 388 2.974698 GGCTGGATCCGCATTCCG 60.975 66.667 23.67 2.85 35.94 4.30
336 389 1.895707 CTGGCTGGATCCGCATTCC 60.896 63.158 23.67 13.39 0.00 3.01
337 390 1.146930 TCTGGCTGGATCCGCATTC 59.853 57.895 23.67 11.59 0.00 2.67
338 391 1.153086 GTCTGGCTGGATCCGCATT 60.153 57.895 23.67 0.00 0.00 3.56
339 392 2.507944 GTCTGGCTGGATCCGCAT 59.492 61.111 23.67 0.00 0.00 4.73
340 393 3.785859 GGTCTGGCTGGATCCGCA 61.786 66.667 23.67 12.74 0.00 5.69
341 394 3.474570 AGGTCTGGCTGGATCCGC 61.475 66.667 17.06 17.06 0.00 5.54
342 395 2.025767 CTCAGGTCTGGCTGGATCCG 62.026 65.000 7.39 3.14 0.00 4.18
343 396 1.694133 CCTCAGGTCTGGCTGGATCC 61.694 65.000 4.20 4.20 0.00 3.36
344 397 0.980231 ACCTCAGGTCTGGCTGGATC 60.980 60.000 0.00 0.00 0.00 3.36
345 398 0.339859 TACCTCAGGTCTGGCTGGAT 59.660 55.000 0.00 0.00 37.09 3.41
346 399 0.339859 ATACCTCAGGTCTGGCTGGA 59.660 55.000 0.00 0.00 37.09 3.86
347 400 2.088104 TATACCTCAGGTCTGGCTGG 57.912 55.000 0.00 2.00 37.09 4.85
348 401 2.230025 CGATATACCTCAGGTCTGGCTG 59.770 54.545 0.00 0.00 37.09 4.85
349 402 2.158445 ACGATATACCTCAGGTCTGGCT 60.158 50.000 0.00 0.00 37.09 4.75
350 403 2.240279 ACGATATACCTCAGGTCTGGC 58.760 52.381 0.00 0.00 37.09 4.85
351 404 4.399618 CCATACGATATACCTCAGGTCTGG 59.600 50.000 0.00 0.00 37.09 3.86
352 405 4.142359 GCCATACGATATACCTCAGGTCTG 60.142 50.000 0.00 0.00 37.09 3.51
353 406 4.017808 GCCATACGATATACCTCAGGTCT 58.982 47.826 0.00 0.00 37.09 3.85
354 407 4.373348 GCCATACGATATACCTCAGGTC 57.627 50.000 0.00 0.00 37.09 3.85
387 440 3.805385 TATACGCACGTACGGCCGC 62.805 63.158 28.58 17.18 37.37 6.53
388 441 2.005537 GTATACGCACGTACGGCCG 61.006 63.158 26.86 26.86 37.37 6.13
389 442 2.005537 CGTATACGCACGTACGGCC 61.006 63.158 21.06 8.75 39.82 6.13
390 443 3.503216 CGTATACGCACGTACGGC 58.497 61.111 21.06 18.06 39.82 5.68
396 449 5.200454 GGGATACATATACGTATACGCACG 58.800 45.833 24.64 11.43 43.39 5.34
397 450 6.122850 TGGGATACATATACGTATACGCAC 57.877 41.667 24.64 7.08 40.62 5.34
398 451 5.882000 ACTGGGATACATATACGTATACGCA 59.118 40.000 24.64 13.28 40.62 5.24
399 452 6.037500 TGACTGGGATACATATACGTATACGC 59.962 42.308 24.64 12.44 40.62 4.42
448 562 4.798344 CCTGCCTGGCTCCTGCTG 62.798 72.222 21.03 1.49 39.59 4.41
594 711 0.902984 TAGGTTCTTGCTGGCCTCGA 60.903 55.000 3.32 0.00 32.90 4.04
595 712 0.460987 CTAGGTTCTTGCTGGCCTCG 60.461 60.000 3.32 0.00 32.90 4.63
613 734 0.107508 CTCCATTGGGTGATGTCGCT 60.108 55.000 2.09 0.00 34.93 4.93
614 735 0.107703 TCTCCATTGGGTGATGTCGC 60.108 55.000 2.09 0.00 31.92 5.19
736 862 1.070038 GCGTTTAATTCCCGTGACGA 58.930 50.000 6.54 0.00 32.73 4.20
737 863 0.095762 GGCGTTTAATTCCCGTGACG 59.904 55.000 0.00 0.00 0.00 4.35
738 864 0.095762 CGGCGTTTAATTCCCGTGAC 59.904 55.000 0.00 0.00 36.18 3.67
824 962 1.500844 GCATGTGCTCTGTGTCAGC 59.499 57.895 0.00 0.00 38.21 4.26
891 3843 2.440065 TGATCATTGCGGGTGGCC 60.440 61.111 0.00 0.00 42.61 5.36
892 3844 3.113745 CTGATCATTGCGGGTGGC 58.886 61.111 0.00 0.00 43.96 5.01
893 3845 3.113745 GCTGATCATTGCGGGTGG 58.886 61.111 0.00 0.00 0.00 4.61
944 3896 1.614525 TCTCTGGTCCTGCCTGCAT 60.615 57.895 0.00 0.00 38.35 3.96
945 3897 2.203832 TCTCTGGTCCTGCCTGCA 60.204 61.111 0.00 0.00 38.35 4.41
946 3898 2.267324 GTCTCTGGTCCTGCCTGC 59.733 66.667 0.00 0.00 38.35 4.85
947 3899 1.294780 GTGTCTCTGGTCCTGCCTG 59.705 63.158 0.00 0.00 38.35 4.85
948 3900 2.279069 CGTGTCTCTGGTCCTGCCT 61.279 63.158 0.00 0.00 38.35 4.75
949 3901 2.262915 CGTGTCTCTGGTCCTGCC 59.737 66.667 0.00 0.00 37.90 4.85
1003 3972 1.366111 GCGTGAAATAAGAGCGGGCA 61.366 55.000 0.00 0.00 0.00 5.36
1004 3973 1.352056 GCGTGAAATAAGAGCGGGC 59.648 57.895 0.00 0.00 0.00 6.13
1008 3977 1.398390 CTGGGTGCGTGAAATAAGAGC 59.602 52.381 0.00 0.00 0.00 4.09
1105 4097 1.957562 CTCGGTTCTCGTGACCTGT 59.042 57.895 0.00 0.00 40.32 4.00
1140 4132 2.265589 ATGATGATGATTGCGGCTCA 57.734 45.000 0.00 0.00 0.00 4.26
1251 4259 3.567797 GCGGGCAAGAAGCTAGCG 61.568 66.667 9.55 0.00 44.79 4.26
1254 4262 2.436646 GCTGCGGGCAAGAAGCTA 60.437 61.111 5.09 0.00 44.79 3.32
1256 4264 4.112341 CAGCTGCGGGCAAGAAGC 62.112 66.667 0.00 4.22 43.16 3.86
1257 4265 4.112341 GCAGCTGCGGGCAAGAAG 62.112 66.667 25.23 0.00 44.79 2.85
1269 4277 0.249955 GAAGAAGAGGCAGAGCAGCT 59.750 55.000 0.00 0.00 34.17 4.24
1270 4278 0.249955 AGAAGAAGAGGCAGAGCAGC 59.750 55.000 0.00 0.00 0.00 5.25
1271 4279 2.234414 AGAAGAAGAAGAGGCAGAGCAG 59.766 50.000 0.00 0.00 0.00 4.24
1272 4280 2.233431 GAGAAGAAGAAGAGGCAGAGCA 59.767 50.000 0.00 0.00 0.00 4.26
1273 4281 2.418609 GGAGAAGAAGAAGAGGCAGAGC 60.419 54.545 0.00 0.00 0.00 4.09
1274 4282 3.099141 AGGAGAAGAAGAAGAGGCAGAG 58.901 50.000 0.00 0.00 0.00 3.35
1275 4283 2.830923 CAGGAGAAGAAGAAGAGGCAGA 59.169 50.000 0.00 0.00 0.00 4.26
1276 4284 2.677613 GCAGGAGAAGAAGAAGAGGCAG 60.678 54.545 0.00 0.00 0.00 4.85
1277 4285 1.277557 GCAGGAGAAGAAGAAGAGGCA 59.722 52.381 0.00 0.00 0.00 4.75
1278 4286 1.554617 AGCAGGAGAAGAAGAAGAGGC 59.445 52.381 0.00 0.00 0.00 4.70
1279 4287 2.093553 CCAGCAGGAGAAGAAGAAGAGG 60.094 54.545 0.00 0.00 36.89 3.69
1280 4288 2.566724 ACCAGCAGGAGAAGAAGAAGAG 59.433 50.000 0.35 0.00 38.69 2.85
1281 4289 2.614259 ACCAGCAGGAGAAGAAGAAGA 58.386 47.619 0.35 0.00 38.69 2.87
1282 4290 3.415457 AACCAGCAGGAGAAGAAGAAG 57.585 47.619 0.35 0.00 38.69 2.85
1283 4291 3.136443 TGAAACCAGCAGGAGAAGAAGAA 59.864 43.478 0.35 0.00 38.69 2.52
1586 4617 2.047465 CTCTTCTGCTGCGGCTGT 60.047 61.111 20.27 0.00 39.59 4.40
1626 4657 2.225467 GATGGAAATGGTGAGCTAGGC 58.775 52.381 0.00 0.00 0.00 3.93
1659 4690 4.721274 TGAATGGAATGGACACTAGATGGA 59.279 41.667 0.00 0.00 0.00 3.41
1666 4697 4.460382 GTGAATGTGAATGGAATGGACACT 59.540 41.667 0.00 0.00 33.41 3.55
1692 4723 4.947278 CGCTAGAGCTCGACGGCG 62.947 72.222 22.61 22.61 39.32 6.46
1696 4727 3.249080 AGAAGATTACGCTAGAGCTCGAC 59.751 47.826 8.37 0.57 39.32 4.20
1706 4737 4.563184 CGTAAGCAAGAAGAAGATTACGCT 59.437 41.667 9.49 0.00 39.02 5.07
1748 4782 0.250814 ACTCGGGGACTATCCGCTAG 60.251 60.000 10.72 10.72 46.22 3.42
1761 4795 3.307242 CAGAGAGCGATTAAAAACTCGGG 59.693 47.826 0.00 0.00 35.48 5.14
1824 4858 1.252904 TTGATGGCTTTCTGGCTGGC 61.253 55.000 0.00 0.00 42.34 4.85
1825 4859 0.815734 CTTGATGGCTTTCTGGCTGG 59.184 55.000 0.00 0.00 42.34 4.85
1826 4860 1.201647 CACTTGATGGCTTTCTGGCTG 59.798 52.381 0.00 0.00 42.34 4.85
1827 4861 1.542492 CACTTGATGGCTTTCTGGCT 58.458 50.000 0.00 0.00 42.34 4.75
1853 4887 4.889409 ACAAGCAATCTTTCTGACAAAGGA 59.111 37.500 0.00 0.00 0.00 3.36
1884 4918 4.080863 AGTCTGAAAGGACTTGTGTTCAGT 60.081 41.667 10.97 0.00 44.70 3.41
1927 4962 5.824097 GGTTGTTTCTTACTGGACCTTGTTA 59.176 40.000 0.00 0.00 0.00 2.41
1929 4964 4.204799 GGTTGTTTCTTACTGGACCTTGT 58.795 43.478 0.00 0.00 0.00 3.16
1930 4965 4.036380 GTGGTTGTTTCTTACTGGACCTTG 59.964 45.833 0.00 0.00 0.00 3.61
1931 4966 4.204799 GTGGTTGTTTCTTACTGGACCTT 58.795 43.478 0.00 0.00 0.00 3.50
1933 4968 2.882761 GGTGGTTGTTTCTTACTGGACC 59.117 50.000 0.00 0.00 0.00 4.46
1934 4969 3.547746 TGGTGGTTGTTTCTTACTGGAC 58.452 45.455 0.00 0.00 0.00 4.02
1935 4970 3.935818 TGGTGGTTGTTTCTTACTGGA 57.064 42.857 0.00 0.00 0.00 3.86
1936 4971 4.993029 TTTGGTGGTTGTTTCTTACTGG 57.007 40.909 0.00 0.00 0.00 4.00
1937 4972 5.752955 CCATTTTGGTGGTTGTTTCTTACTG 59.247 40.000 0.00 0.00 34.46 2.74
1938 4973 5.912892 CCATTTTGGTGGTTGTTTCTTACT 58.087 37.500 0.00 0.00 34.46 2.24
1964 5012 8.267620 ACCATTGTAGTACCGTTTTATTTACC 57.732 34.615 0.00 0.00 0.00 2.85
1981 5029 7.648142 CAGCAAAGAAAGTTTCTACCATTGTA 58.352 34.615 18.31 0.00 39.61 2.41
2004 5052 5.657474 TCTAATCTACCGTACTTTTGGCAG 58.343 41.667 0.00 0.00 0.00 4.85
2008 5056 7.270047 TGGGAATCTAATCTACCGTACTTTTG 58.730 38.462 0.00 0.00 0.00 2.44
2040 5088 7.897864 TCTTCAAAACTTGTTTTCCAACCTAA 58.102 30.769 8.33 0.00 31.02 2.69
2041 5089 7.469537 TCTTCAAAACTTGTTTTCCAACCTA 57.530 32.000 8.33 0.00 31.02 3.08
2060 5108 6.097356 GCTTGAAATGAAATCAGCATCTTCA 58.903 36.000 0.00 0.00 33.82 3.02
2061 5109 6.097356 TGCTTGAAATGAAATCAGCATCTTC 58.903 36.000 0.00 0.00 31.04 2.87
2064 5112 6.903883 AATGCTTGAAATGAAATCAGCATC 57.096 33.333 4.99 0.00 39.00 3.91
2136 5184 6.039616 GCTCTAGATGTTCTCCTTACAGTTG 58.960 44.000 0.00 0.00 0.00 3.16
2142 5190 4.281657 TGCAGCTCTAGATGTTCTCCTTA 58.718 43.478 0.00 0.00 33.30 2.69
2692 5744 0.988832 ATTTTGGGGGTACTCGAGCA 59.011 50.000 13.61 0.00 0.00 4.26
2697 5749 3.954258 CCAGAATGATTTTGGGGGTACTC 59.046 47.826 6.84 0.00 39.69 2.59
2846 5898 5.592282 AGAAGCTCTTGATGACTCTATCGAA 59.408 40.000 0.00 0.00 0.00 3.71
2947 5999 0.440371 CTGCGGAAAGAGTTCTTCGC 59.560 55.000 16.43 16.43 44.37 4.70
2970 6022 0.318441 CTTGGTGAGCTCTTCGGTGA 59.682 55.000 16.19 0.00 0.00 4.02
3293 6345 0.537371 CTTCTTGGGTTTCAGCCGGT 60.537 55.000 1.90 0.00 38.98 5.28
3751 6803 1.108727 TGAAGCCTTGCTGTTGGTGG 61.109 55.000 0.00 0.00 39.62 4.61
3827 6879 1.075659 GAGCCCACCAAGCCTTCTT 59.924 57.895 0.00 0.00 0.00 2.52
3854 6906 2.866156 TCTGAAGTCTTTGTTGCACTCG 59.134 45.455 0.00 0.00 0.00 4.18
3953 7005 2.455557 TCCTCTTCTTGGCTCTGAGAG 58.544 52.381 9.28 4.80 0.00 3.20
4181 7239 0.179161 CTCTGCTGGTAGGTTCGTCG 60.179 60.000 0.00 0.00 0.00 5.12
4191 7249 4.127040 CGAGCTCGCTCTGCTGGT 62.127 66.667 25.07 0.00 41.30 4.00
4311 7369 0.179092 GGGGATGCTGCTTCATTTGC 60.179 55.000 16.12 0.08 0.00 3.68
4496 7554 0.321298 TCTGTACCTTTTGGCTCGGC 60.321 55.000 0.00 0.00 45.59 5.54
4732 7797 6.605471 TGCTAGATCAACTTCTCACCTTTA 57.395 37.500 0.00 0.00 0.00 1.85
4794 7861 9.878599 CTATCGATTATTAACAAATTGGTGGTC 57.121 33.333 1.71 0.00 0.00 4.02
4851 7921 6.590656 TTGAATGGGACCAAATAGTAGGAT 57.409 37.500 0.00 0.00 0.00 3.24
4974 8044 2.360726 TCGCAGGACCACGAGCTA 60.361 61.111 5.60 0.00 33.69 3.32
5059 8147 1.589716 GAGTGCAACATGTGGGGCTC 61.590 60.000 15.64 12.75 41.43 4.70
5143 8231 3.055385 GTGCATCTGTAAAGGGGACACTA 60.055 47.826 0.00 0.00 0.00 2.74
5213 8303 4.531339 ACATGGATCAGACTGGAGATATGG 59.469 45.833 1.81 0.00 0.00 2.74
5442 8534 2.205022 TTCTGGTTTGATCTGGCTGG 57.795 50.000 0.00 0.00 0.00 4.85
5800 8892 2.860735 CGTTCCACTTGCAGAGCTATAC 59.139 50.000 0.00 0.00 0.00 1.47
5863 8955 3.144506 CTCTGTGCACAACTCCTTGAAT 58.855 45.455 21.98 0.00 0.00 2.57
5872 8964 0.529773 TGTCGACCTCTGTGCACAAC 60.530 55.000 21.98 14.37 0.00 3.32
5953 9045 7.157347 TCTCATACAATGCATCCTCAGATAAC 58.843 38.462 0.00 0.00 0.00 1.89
6278 9421 2.977914 TGCTTCCTCTAGTGTCAATGC 58.022 47.619 0.00 0.00 0.00 3.56
6288 9431 3.769739 TTCAACTGCTTGCTTCCTCTA 57.230 42.857 0.00 0.00 0.00 2.43
6292 9435 2.819608 TGGTATTCAACTGCTTGCTTCC 59.180 45.455 0.00 0.00 0.00 3.46
6311 9454 8.723942 AAGACTTTCTATAAGTGCATAACTGG 57.276 34.615 0.00 0.00 39.81 4.00
6351 9495 9.865321 TGATCAAAGTAAGTATGTAACACCTAC 57.135 33.333 0.00 0.00 0.00 3.18
6380 9525 5.477637 TGCAATCAAGAAATGGAGAACATGA 59.522 36.000 0.00 0.00 40.44 3.07
6381 9526 5.575606 GTGCAATCAAGAAATGGAGAACATG 59.424 40.000 0.00 0.00 40.44 3.21
6382 9527 5.244402 TGTGCAATCAAGAAATGGAGAACAT 59.756 36.000 0.00 0.00 43.07 2.71
6383 9528 4.583907 TGTGCAATCAAGAAATGGAGAACA 59.416 37.500 0.00 0.00 0.00 3.18
6385 9530 5.302568 AGTTGTGCAATCAAGAAATGGAGAA 59.697 36.000 0.00 0.00 0.00 2.87
6475 9624 2.959030 GCCAAATGGTCCCTTCTTATCC 59.041 50.000 0.71 0.00 37.57 2.59
6519 9668 5.241285 GGAGGGAGTAGTAGTATAACAGTGC 59.759 48.000 0.00 0.00 0.00 4.40
6526 9675 4.910304 AGGAACGGAGGGAGTAGTAGTATA 59.090 45.833 0.00 0.00 0.00 1.47
6527 9676 3.721050 AGGAACGGAGGGAGTAGTAGTAT 59.279 47.826 0.00 0.00 0.00 2.12
6530 9679 2.732844 AGGAACGGAGGGAGTAGTAG 57.267 55.000 0.00 0.00 0.00 2.57
6531 9680 4.591321 TTTAGGAACGGAGGGAGTAGTA 57.409 45.455 0.00 0.00 0.00 1.82
6532 9681 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
6533 9682 6.667558 ATTATTTAGGAACGGAGGGAGTAG 57.332 41.667 0.00 0.00 0.00 2.57
6534 9683 6.384886 ACAATTATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
6535 9684 5.191124 ACAATTATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
6536 9685 5.681639 ACAATTATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
6537 9686 5.427481 AGACAATTATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
6538 9687 5.681639 AGACAATTATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
6539 9688 7.553044 AGAAAGACAATTATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
6540 9689 8.494016 AGAAAGACAATTATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
6541 9690 9.595823 CTAGAAAGACAATTATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
6542 9691 8.336080 GCTAGAAAGACAATTATTTAGGAACGG 58.664 37.037 0.00 0.00 0.00 4.44
6543 9692 8.336080 GGCTAGAAAGACAATTATTTAGGAACG 58.664 37.037 0.00 0.00 0.00 3.95
6544 9693 9.174166 TGGCTAGAAAGACAATTATTTAGGAAC 57.826 33.333 0.00 0.00 38.01 3.62
6545 9694 9.920946 ATGGCTAGAAAGACAATTATTTAGGAA 57.079 29.630 0.00 0.00 46.32 3.36
6546 9695 9.561069 GATGGCTAGAAAGACAATTATTTAGGA 57.439 33.333 0.00 0.00 46.32 2.94
6547 9696 9.566432 AGATGGCTAGAAAGACAATTATTTAGG 57.434 33.333 0.00 0.00 46.32 2.69
6550 9699 9.466497 TTGAGATGGCTAGAAAGACAATTATTT 57.534 29.630 0.00 0.00 46.32 1.40
6551 9700 9.466497 TTTGAGATGGCTAGAAAGACAATTATT 57.534 29.630 0.00 0.00 46.32 1.40
6552 9701 9.638176 ATTTGAGATGGCTAGAAAGACAATTAT 57.362 29.630 0.00 0.00 46.32 1.28
6553 9702 8.896744 CATTTGAGATGGCTAGAAAGACAATTA 58.103 33.333 0.00 0.00 46.32 1.40
6554 9703 7.147949 CCATTTGAGATGGCTAGAAAGACAATT 60.148 37.037 0.00 0.00 46.32 2.32
6555 9704 6.320672 CCATTTGAGATGGCTAGAAAGACAAT 59.679 38.462 0.00 0.00 46.32 2.71
6556 9705 5.649395 CCATTTGAGATGGCTAGAAAGACAA 59.351 40.000 0.00 0.00 46.32 3.18
6558 9707 5.295540 GTCCATTTGAGATGGCTAGAAAGAC 59.704 44.000 0.00 0.00 39.01 3.01
6559 9708 5.190528 AGTCCATTTGAGATGGCTAGAAAGA 59.809 40.000 0.00 0.00 39.01 2.52
6560 9709 5.435291 AGTCCATTTGAGATGGCTAGAAAG 58.565 41.667 0.00 0.00 39.01 2.62
6561 9710 5.441718 AGTCCATTTGAGATGGCTAGAAA 57.558 39.130 0.00 0.00 39.01 2.52
6562 9711 5.425217 TGTAGTCCATTTGAGATGGCTAGAA 59.575 40.000 0.00 0.00 39.01 2.10
6563 9712 4.962362 TGTAGTCCATTTGAGATGGCTAGA 59.038 41.667 0.00 0.00 39.01 2.43
6564 9713 5.282055 TGTAGTCCATTTGAGATGGCTAG 57.718 43.478 0.00 0.00 39.01 3.42
6565 9714 5.045942 TGTTGTAGTCCATTTGAGATGGCTA 60.046 40.000 0.00 0.33 39.01 3.93
6566 9715 4.263462 TGTTGTAGTCCATTTGAGATGGCT 60.263 41.667 0.00 1.24 39.01 4.75
6567 9716 4.009675 TGTTGTAGTCCATTTGAGATGGC 58.990 43.478 0.00 0.00 39.01 4.40
6568 9717 6.018751 CGTATGTTGTAGTCCATTTGAGATGG 60.019 42.308 0.00 0.00 40.48 3.51
6569 9718 6.018751 CCGTATGTTGTAGTCCATTTGAGATG 60.019 42.308 0.00 0.00 0.00 2.90
6570 9719 6.049149 CCGTATGTTGTAGTCCATTTGAGAT 58.951 40.000 0.00 0.00 0.00 2.75
6571 9720 5.186215 TCCGTATGTTGTAGTCCATTTGAGA 59.814 40.000 0.00 0.00 0.00 3.27
6572 9721 5.416083 TCCGTATGTTGTAGTCCATTTGAG 58.584 41.667 0.00 0.00 0.00 3.02
6573 9722 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
6574 9723 5.584649 ACATCCGTATGTTGTAGTCCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
6575 9724 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
6576 9725 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
6577 9726 6.455647 CATACATCCGTATGTTGTAGTCCAT 58.544 40.000 0.00 0.00 46.70 3.41
6578 9727 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
6589 9738 9.692749 CTAAAACATGTCTACATACATCCGTAT 57.307 33.333 0.00 0.00 38.01 3.06
6590 9739 8.905850 TCTAAAACATGTCTACATACATCCGTA 58.094 33.333 0.00 0.00 38.01 4.02
6591 9740 7.778083 TCTAAAACATGTCTACATACATCCGT 58.222 34.615 0.00 0.00 38.01 4.69
6592 9741 7.921214 ACTCTAAAACATGTCTACATACATCCG 59.079 37.037 0.00 0.00 38.01 4.18
6593 9742 9.035607 CACTCTAAAACATGTCTACATACATCC 57.964 37.037 0.00 0.00 38.01 3.51
6594 9743 9.587772 ACACTCTAAAACATGTCTACATACATC 57.412 33.333 0.00 0.00 38.01 3.06
6600 9749 9.856488 GAATCTACACTCTAAAACATGTCTACA 57.144 33.333 0.00 0.00 0.00 2.74
6601 9750 9.856488 TGAATCTACACTCTAAAACATGTCTAC 57.144 33.333 0.00 0.00 0.00 2.59
6602 9751 9.856488 GTGAATCTACACTCTAAAACATGTCTA 57.144 33.333 0.00 0.00 37.73 2.59
6603 9752 8.589338 AGTGAATCTACACTCTAAAACATGTCT 58.411 33.333 0.00 0.00 46.36 3.41
6604 9753 8.764524 AGTGAATCTACACTCTAAAACATGTC 57.235 34.615 0.00 0.00 46.36 3.06
6617 9766 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
6618 9767 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
6619 9768 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
6620 9769 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
6621 9770 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
6622 9771 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
6623 9772 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
6624 9773 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
6625 9774 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
6626 9775 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
6627 9776 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
6628 9777 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
6629 9778 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
6630 9779 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
6631 9780 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
6632 9781 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
6633 9782 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
6634 9783 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
6635 9784 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
6636 9785 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
6637 9786 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
6638 9787 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
6639 9788 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
6640 9789 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
6641 9790 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
6643 9792 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
6644 9793 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
6645 9794 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
6646 9795 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
6647 9796 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
6648 9797 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
6649 9798 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
6650 9799 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
6651 9800 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
6664 9813 9.595823 CCGTTCCTAAATAATTGTCTTTCTAGA 57.404 33.333 0.00 0.00 0.00 2.43
6665 9814 9.595823 TCCGTTCCTAAATAATTGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
6666 9815 9.595823 CTCCGTTCCTAAATAATTGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
6667 9816 7.553044 CCTCCGTTCCTAAATAATTGTCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
6668 9817 7.201705 CCCTCCGTTCCTAAATAATTGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
6669 9818 6.602009 CCCTCCGTTCCTAAATAATTGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
6670 9819 6.069847 TCCCTCCGTTCCTAAATAATTGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
6671 9820 5.427481 TCCCTCCGTTCCTAAATAATTGTCT 59.573 40.000 0.00 0.00 0.00 3.41
6672 9821 5.677567 TCCCTCCGTTCCTAAATAATTGTC 58.322 41.667 0.00 0.00 0.00 3.18
6673 9822 5.191124 ACTCCCTCCGTTCCTAAATAATTGT 59.809 40.000 0.00 0.00 0.00 2.71
6674 9823 5.681639 ACTCCCTCCGTTCCTAAATAATTG 58.318 41.667 0.00 0.00 0.00 2.32
6675 9824 5.970501 ACTCCCTCCGTTCCTAAATAATT 57.029 39.130 0.00 0.00 0.00 1.40
6676 9825 6.379579 TCTACTCCCTCCGTTCCTAAATAAT 58.620 40.000 0.00 0.00 0.00 1.28
6677 9826 5.769835 TCTACTCCCTCCGTTCCTAAATAA 58.230 41.667 0.00 0.00 0.00 1.40
6678 9827 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
6679 9828 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
6680 9829 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
6681 9830 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
6682 9831 4.166725 TGTTATCTACTCCCTCCGTTCCTA 59.833 45.833 0.00 0.00 0.00 2.94
6683 9832 3.053095 TGTTATCTACTCCCTCCGTTCCT 60.053 47.826 0.00 0.00 0.00 3.36
6684 9833 3.294214 TGTTATCTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
6685 9834 4.643784 TCTTGTTATCTACTCCCTCCGTTC 59.356 45.833 0.00 0.00 0.00 3.95
6686 9835 4.607239 TCTTGTTATCTACTCCCTCCGTT 58.393 43.478 0.00 0.00 0.00 4.44
6687 9836 4.246712 TCTTGTTATCTACTCCCTCCGT 57.753 45.455 0.00 0.00 0.00 4.69
6688 9837 4.585162 ACATCTTGTTATCTACTCCCTCCG 59.415 45.833 0.00 0.00 0.00 4.63
6689 9838 6.487299 AACATCTTGTTATCTACTCCCTCC 57.513 41.667 0.00 0.00 39.09 4.30
6690 9839 6.987404 GGAAACATCTTGTTATCTACTCCCTC 59.013 42.308 0.00 0.00 40.14 4.30
6691 9840 6.674419 AGGAAACATCTTGTTATCTACTCCCT 59.326 38.462 0.00 0.00 40.14 4.20
6692 9841 6.763610 CAGGAAACATCTTGTTATCTACTCCC 59.236 42.308 0.00 0.00 40.14 4.30
6693 9842 6.258947 GCAGGAAACATCTTGTTATCTACTCC 59.741 42.308 0.00 0.00 40.14 3.85
6694 9843 6.258947 GGCAGGAAACATCTTGTTATCTACTC 59.741 42.308 0.00 0.00 40.14 2.59
6695 9844 6.116126 GGCAGGAAACATCTTGTTATCTACT 58.884 40.000 0.00 0.00 40.14 2.57
6696 9845 5.880332 TGGCAGGAAACATCTTGTTATCTAC 59.120 40.000 0.00 0.00 40.14 2.59
6759 9909 3.383505 ACAAACAGTTTTGGGAGCTAACC 59.616 43.478 0.00 0.00 45.65 2.85
6786 9936 4.159120 GCTGCCGTAGAATTTTCTTTGTC 58.841 43.478 0.00 0.00 38.70 3.18
6793 9943 2.640184 GTAGGGCTGCCGTAGAATTTT 58.360 47.619 20.48 0.00 0.00 1.82
6817 9967 2.801162 CGTCCTCGTGCGAGTGTG 60.801 66.667 18.51 5.61 40.44 3.82
7050 10207 6.093082 AGCCGGTAGTACAAATCAATTAACAC 59.907 38.462 1.90 0.00 0.00 3.32
7143 10318 2.981140 CGTCTTGTCCTCTCGAAGAAAC 59.019 50.000 0.00 0.00 34.09 2.78
7150 10325 0.456995 GCCTTCGTCTTGTCCTCTCG 60.457 60.000 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.