Multiple sequence alignment - TraesCS2B01G201900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G201900 chr2B 100.000 3672 0 0 1 3672 181121782 181118111 0.000000e+00 6782.0
1 TraesCS2B01G201900 chr2D 93.285 2889 127 28 257 3129 127261356 127258519 0.000000e+00 4198.0
2 TraesCS2B01G201900 chr2D 89.764 127 9 2 82 208 127262167 127262045 3.800000e-35 159.0
3 TraesCS2B01G201900 chr2D 90.361 83 8 0 1 83 127263983 127263901 3.880000e-20 110.0
4 TraesCS2B01G201900 chr2A 94.933 2388 92 17 776 3157 134275621 134273257 0.000000e+00 3712.0
5 TraesCS2B01G201900 chr2A 92.326 430 23 7 3178 3597 134273150 134272721 1.460000e-168 603.0
6 TraesCS2B01G201900 chr4D 79.907 214 33 7 449 655 447341506 447341296 8.220000e-32 148.0
7 TraesCS2B01G201900 chr1B 98.039 51 1 0 3622 3672 659732028 659732078 5.050000e-14 89.8
8 TraesCS2B01G201900 chr7B 97.959 49 1 0 3624 3672 455810793 455810745 6.530000e-13 86.1
9 TraesCS2B01G201900 chr7B 97.917 48 1 0 3625 3672 639923369 639923416 2.350000e-12 84.2
10 TraesCS2B01G201900 chr7B 97.917 48 1 0 3625 3672 639943015 639943062 2.350000e-12 84.2
11 TraesCS2B01G201900 chr6B 97.959 49 1 0 3624 3672 673364078 673364030 6.530000e-13 86.1
12 TraesCS2B01G201900 chr3A 97.959 49 1 0 3624 3672 681997604 681997652 6.530000e-13 86.1
13 TraesCS2B01G201900 chr4B 97.917 48 1 0 3625 3672 202576366 202576413 2.350000e-12 84.2
14 TraesCS2B01G201900 chr5B 94.340 53 3 0 3620 3672 660343044 660343096 8.450000e-12 82.4
15 TraesCS2B01G201900 chr3B 91.525 59 4 1 3615 3672 662443047 662442989 3.040000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G201900 chr2B 181118111 181121782 3671 True 6782.0 6782 100.000000 1 3672 1 chr2B.!!$R1 3671
1 TraesCS2B01G201900 chr2D 127258519 127263983 5464 True 1489.0 4198 91.136667 1 3129 3 chr2D.!!$R1 3128
2 TraesCS2B01G201900 chr2A 134272721 134275621 2900 True 2157.5 3712 93.629500 776 3597 2 chr2A.!!$R1 2821

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 2839 0.244994 AAACAAAAGGTGTGCACGCA 59.755 45.0 29.97 2.32 40.6 5.24 F
991 3371 0.250234 TCTCAAGAATCCCACGCCAG 59.750 55.0 0.00 0.00 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1658 4041 0.253894 TACCATCTCCTCCACGACGA 59.746 55.0 0.0 0.0 0.00 4.20 R
2936 5330 0.812811 ATCAAGACAGCATGCGCGAT 60.813 50.0 12.1 6.4 45.49 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 2.380084 TTTTTGGACTCGATCTCCCG 57.620 50.000 6.79 0.00 0.00 5.14
80 81 0.250381 GGACTCGATCTCCCGCTCTA 60.250 60.000 0.00 0.00 0.00 2.43
93 1829 3.452264 TCCCGCTCTAGCATGCATATTAT 59.548 43.478 21.98 0.00 42.21 1.28
94 1830 3.806521 CCCGCTCTAGCATGCATATTATC 59.193 47.826 21.98 1.51 42.21 1.75
95 1831 4.442612 CCCGCTCTAGCATGCATATTATCT 60.443 45.833 21.98 0.00 42.21 1.98
96 1832 5.114780 CCGCTCTAGCATGCATATTATCTT 58.885 41.667 21.98 0.00 42.21 2.40
97 1833 5.583854 CCGCTCTAGCATGCATATTATCTTT 59.416 40.000 21.98 0.00 42.21 2.52
98 1834 6.093219 CCGCTCTAGCATGCATATTATCTTTT 59.907 38.462 21.98 0.00 42.21 2.27
99 1835 7.361542 CCGCTCTAGCATGCATATTATCTTTTT 60.362 37.037 21.98 0.00 42.21 1.94
153 1889 8.296713 GCTATTGGTAACTTTGTCTGAAAATGA 58.703 33.333 0.88 0.00 37.61 2.57
165 1901 7.249186 TGTCTGAAAATGAAAAATTTGCCAG 57.751 32.000 0.00 0.00 0.00 4.85
178 1914 2.437200 TTGCCAGCCGATTTTCTTTG 57.563 45.000 0.00 0.00 0.00 2.77
220 1969 3.240342 GCTCCGAGCGATAATGAAAAC 57.760 47.619 4.23 0.00 0.00 2.43
236 1985 2.468532 AAACGCAGCAACACAACTAC 57.531 45.000 0.00 0.00 0.00 2.73
240 1989 1.852067 GCAGCAACACAACTACGGGG 61.852 60.000 0.00 0.00 0.00 5.73
241 1990 1.072505 AGCAACACAACTACGGGGG 59.927 57.895 0.00 0.00 0.00 5.40
243 1992 1.512156 GCAACACAACTACGGGGGTG 61.512 60.000 0.00 0.00 37.29 4.61
270 2646 2.159787 CGTGCGTGAGTAACTACTACGT 60.160 50.000 14.53 0.00 36.50 3.57
271 2647 3.411751 GTGCGTGAGTAACTACTACGTC 58.588 50.000 0.00 10.29 36.50 4.34
274 2650 4.869861 TGCGTGAGTAACTACTACGTCATA 59.130 41.667 0.00 0.00 36.50 2.15
276 2652 5.006165 GCGTGAGTAACTACTACGTCATAGT 59.994 44.000 0.00 0.00 46.39 2.12
285 2661 4.450305 ACTACGTCATAGTGGGGAGTAT 57.550 45.455 0.00 0.00 42.90 2.12
293 2669 7.339721 ACGTCATAGTGGGGAGTATATTCATAG 59.660 40.741 0.00 0.00 0.00 2.23
300 2676 6.154706 GTGGGGAGTATATTCATAGTGGGTAG 59.845 46.154 0.00 0.00 0.00 3.18
301 2677 6.183361 TGGGGAGTATATTCATAGTGGGTAGT 60.183 42.308 0.00 0.00 0.00 2.73
302 2678 7.019862 TGGGGAGTATATTCATAGTGGGTAGTA 59.980 40.741 0.00 0.00 0.00 1.82
303 2679 7.560626 GGGGAGTATATTCATAGTGGGTAGTAG 59.439 44.444 0.00 0.00 0.00 2.57
318 2694 5.187576 TGGGTAGTAGTATTACGCAAACCTT 59.812 40.000 16.88 0.00 39.88 3.50
319 2695 5.750547 GGGTAGTAGTATTACGCAAACCTTC 59.249 44.000 13.04 0.00 34.98 3.46
320 2696 6.332630 GGTAGTAGTATTACGCAAACCTTCA 58.667 40.000 0.00 0.00 34.88 3.02
323 2699 7.916914 AGTAGTATTACGCAAACCTTCATTT 57.083 32.000 0.00 0.00 34.88 2.32
325 2701 8.876790 AGTAGTATTACGCAAACCTTCATTTAC 58.123 33.333 0.00 0.00 34.88 2.01
326 2702 7.916914 AGTATTACGCAAACCTTCATTTACT 57.083 32.000 0.00 0.00 0.00 2.24
357 2733 2.017049 ACTCACTTTGTCTTGTGGTGC 58.983 47.619 0.00 0.00 35.15 5.01
359 2735 0.592247 CACTTTGTCTTGTGGTGCGC 60.592 55.000 0.00 0.00 0.00 6.09
361 2737 1.225855 CTTTGTCTTGTGGTGCGCTA 58.774 50.000 9.73 0.00 0.00 4.26
362 2738 1.806542 CTTTGTCTTGTGGTGCGCTAT 59.193 47.619 9.73 0.00 0.00 2.97
366 2742 1.135972 GTCTTGTGGTGCGCTATGTTG 60.136 52.381 9.73 0.00 0.00 3.33
390 2766 5.066893 GCCACAAGCATCTCTTCATCATTAA 59.933 40.000 0.00 0.00 42.97 1.40
391 2767 6.493116 CCACAAGCATCTCTTCATCATTAAC 58.507 40.000 0.00 0.00 31.27 2.01
394 2770 7.065443 CACAAGCATCTCTTCATCATTAACAGA 59.935 37.037 0.00 0.00 31.27 3.41
396 2772 7.731882 AGCATCTCTTCATCATTAACAGATG 57.268 36.000 11.63 11.63 43.25 2.90
397 2773 7.281098 AGCATCTCTTCATCATTAACAGATGT 58.719 34.615 15.51 0.00 42.63 3.06
398 2774 7.441760 AGCATCTCTTCATCATTAACAGATGTC 59.558 37.037 15.51 1.80 42.63 3.06
399 2775 7.226128 GCATCTCTTCATCATTAACAGATGTCA 59.774 37.037 15.51 6.81 42.63 3.58
409 2785 8.334263 TCATTAACAGATGTCACATAAGCAAA 57.666 30.769 0.00 0.00 0.00 3.68
418 2794 9.846248 AGATGTCACATAAGCAAATTTACTTTC 57.154 29.630 8.92 0.00 0.00 2.62
419 2795 8.986477 ATGTCACATAAGCAAATTTACTTTCC 57.014 30.769 8.92 0.00 0.00 3.13
436 2814 1.061546 TCCAGTGTGTTACCCCTTCC 58.938 55.000 0.00 0.00 0.00 3.46
437 2815 0.321298 CCAGTGTGTTACCCCTTCCG 60.321 60.000 0.00 0.00 0.00 4.30
439 2817 1.134228 AGTGTGTTACCCCTTCCGTT 58.866 50.000 0.00 0.00 0.00 4.44
441 2819 0.397564 TGTGTTACCCCTTCCGTTCC 59.602 55.000 0.00 0.00 0.00 3.62
443 2821 1.138568 TGTTACCCCTTCCGTTCCAA 58.861 50.000 0.00 0.00 0.00 3.53
445 2823 1.881973 GTTACCCCTTCCGTTCCAAAC 59.118 52.381 0.00 0.00 0.00 2.93
447 2825 0.259356 ACCCCTTCCGTTCCAAACAA 59.741 50.000 0.00 0.00 0.00 2.83
451 2829 2.223947 CCCTTCCGTTCCAAACAAAAGG 60.224 50.000 10.86 10.86 40.10 3.11
454 2832 2.448453 TCCGTTCCAAACAAAAGGTGT 58.552 42.857 0.00 0.00 44.64 4.16
461 2839 0.244994 AAACAAAAGGTGTGCACGCA 59.755 45.000 29.97 2.32 40.60 5.24
462 2840 0.459489 AACAAAAGGTGTGCACGCAT 59.541 45.000 29.97 22.31 40.60 4.73
465 2843 0.593128 AAAAGGTGTGCACGCATCTC 59.407 50.000 29.97 13.84 0.00 2.75
466 2844 0.534877 AAAGGTGTGCACGCATCTCA 60.535 50.000 29.97 0.00 0.00 3.27
470 2848 1.268999 GGTGTGCACGCATCTCAAAAA 60.269 47.619 29.97 0.00 0.00 1.94
472 2850 2.658325 GTGTGCACGCATCTCAAAAATC 59.342 45.455 25.05 0.00 0.00 2.17
475 2853 3.120121 GTGCACGCATCTCAAAAATCAAC 59.880 43.478 0.00 0.00 0.00 3.18
477 2855 3.362831 GCACGCATCTCAAAAATCAACTG 59.637 43.478 0.00 0.00 0.00 3.16
487 2865 8.231692 TCTCAAAAATCAACTGTGACCATAAA 57.768 30.769 0.00 0.00 36.31 1.40
498 2876 5.944007 ACTGTGACCATAAATTAGACCAACC 59.056 40.000 0.00 0.00 0.00 3.77
520 2898 6.062434 CCAACTGTTGGTTTTACGTGATAA 57.938 37.500 27.51 0.00 45.93 1.75
635 3013 1.637563 GATTTTTCGAAAGCGTGCGTC 59.362 47.619 10.98 0.16 38.98 5.19
663 3042 6.560003 TTTCATGGTATGGAGTATGTCACT 57.440 37.500 0.00 0.00 41.47 3.41
681 3060 5.186409 TGTCACTATGTAAGTTACTCCCACC 59.814 44.000 14.00 0.00 35.76 4.61
685 3064 3.992943 TGTAAGTTACTCCCACCATGG 57.007 47.619 11.19 11.19 37.25 3.66
686 3065 2.026636 TGTAAGTTACTCCCACCATGGC 60.027 50.000 13.04 0.00 35.79 4.40
690 3069 1.838077 GTTACTCCCACCATGGCTAGT 59.162 52.381 13.04 12.39 35.79 2.57
705 3084 5.692115 TGGCTAGTCTTAATGACCATTGA 57.308 39.130 5.56 0.00 46.46 2.57
708 3087 6.058183 GGCTAGTCTTAATGACCATTGACAT 58.942 40.000 12.63 0.00 46.46 3.06
711 3090 7.443575 GCTAGTCTTAATGACCATTGACATGAT 59.556 37.037 0.00 0.00 46.46 2.45
712 3091 9.334947 CTAGTCTTAATGACCATTGACATGATT 57.665 33.333 0.00 0.00 46.46 2.57
713 3092 8.585471 AGTCTTAATGACCATTGACATGATTT 57.415 30.769 0.00 0.00 46.46 2.17
714 3093 9.028284 AGTCTTAATGACCATTGACATGATTTT 57.972 29.630 0.00 0.00 46.46 1.82
954 3334 1.118965 TCAGCCTCACCTTCGAACCA 61.119 55.000 0.00 0.00 0.00 3.67
958 3338 1.200020 GCCTCACCTTCGAACCATTTG 59.800 52.381 0.00 0.00 0.00 2.32
991 3371 0.250234 TCTCAAGAATCCCACGCCAG 59.750 55.000 0.00 0.00 0.00 4.85
1104 3487 4.214327 CTTCTCCTCGCCGCCTCC 62.214 72.222 0.00 0.00 0.00 4.30
1635 4018 1.878522 CTTCGGCAAGCGCTACGAT 60.879 57.895 25.34 3.05 38.60 3.73
1656 4039 2.172505 TGACTTCACAAGCCAAGAAGGA 59.827 45.455 0.00 0.00 42.24 3.36
1658 4041 2.173569 ACTTCACAAGCCAAGAAGGAGT 59.826 45.455 0.00 0.00 42.24 3.85
1660 4043 1.151668 CACAAGCCAAGAAGGAGTCG 58.848 55.000 0.00 0.00 41.22 4.18
1827 4210 4.458989 GGTAACATCATTCAGGAGCACAAA 59.541 41.667 0.00 0.00 0.00 2.83
2078 4463 6.100004 TGTACGTTTCAGGAGATGATCTTTC 58.900 40.000 0.00 0.00 37.89 2.62
2122 4507 0.475475 TGATGGAGTGGATCATGGCC 59.525 55.000 0.00 0.00 0.00 5.36
2572 4957 4.003788 CACCGGTTCGAGTGGGCT 62.004 66.667 2.97 0.00 0.00 5.19
2575 4960 4.452733 CGGTTCGAGTGGGCTCCC 62.453 72.222 0.00 0.00 38.49 4.30
2617 5002 2.125753 GACCTGTCAGAGCGCCTG 60.126 66.667 16.84 16.84 44.27 4.85
2687 5072 1.747325 CTAGGGCCAGAGAGAGCTGC 61.747 65.000 6.18 0.00 34.56 5.25
2688 5073 2.520657 TAGGGCCAGAGAGAGCTGCA 62.521 60.000 6.18 0.00 34.56 4.41
2689 5074 2.125188 GGCCAGAGAGAGCTGCAC 60.125 66.667 0.00 0.00 34.56 4.57
2808 5196 0.179070 GCTTGCCAGGGTCTAGTAGC 60.179 60.000 0.00 0.00 0.00 3.58
2839 5230 2.812836 TTGGTCATCTCCATGCATGT 57.187 45.000 24.58 3.69 37.33 3.21
2892 5283 3.426787 TCCGTTAGCCATTGAAGGAAA 57.573 42.857 0.00 0.00 0.00 3.13
2926 5320 0.971447 GGGTTACTCCTGCTCGAGGT 60.971 60.000 15.58 5.51 43.37 3.85
2939 5333 2.226896 CGAGGTCAGCGAGCAATCG 61.227 63.158 9.70 7.45 31.89 3.34
3001 5399 8.157476 AGATGGAGAGTTATTAGTGTGTTTTGT 58.843 33.333 0.00 0.00 0.00 2.83
3063 5461 2.350804 TGTCATGTCGAGTCGTAGTAGC 59.649 50.000 13.12 1.59 0.00 3.58
3066 5464 0.717784 TGTCGAGTCGTAGTAGCGTG 59.282 55.000 13.12 0.00 0.00 5.34
3157 5555 4.074259 CTGCATGCCCATAACTTATGCTA 58.926 43.478 16.68 0.00 43.29 3.49
3158 5556 3.820467 TGCATGCCCATAACTTATGCTAC 59.180 43.478 16.68 0.00 43.29 3.58
3161 5559 5.705441 GCATGCCCATAACTTATGCTACTTA 59.295 40.000 6.36 0.00 40.58 2.24
3162 5560 6.128172 GCATGCCCATAACTTATGCTACTTAG 60.128 42.308 6.36 0.00 40.58 2.18
3163 5561 5.865085 TGCCCATAACTTATGCTACTTAGG 58.135 41.667 3.52 0.00 34.85 2.69
3164 5562 4.695928 GCCCATAACTTATGCTACTTAGGC 59.304 45.833 3.52 5.53 34.85 3.93
3165 5563 5.744887 GCCCATAACTTATGCTACTTAGGCA 60.745 44.000 13.76 0.00 44.05 4.75
3166 5564 6.296026 CCCATAACTTATGCTACTTAGGCAA 58.704 40.000 3.52 0.00 43.14 4.52
3168 5566 7.284489 CCCATAACTTATGCTACTTAGGCAAAA 59.716 37.037 3.52 0.00 43.14 2.44
3169 5567 8.682710 CCATAACTTATGCTACTTAGGCAAAAA 58.317 33.333 3.52 0.00 43.14 1.94
3191 5675 0.254178 ATTAGTGGCCTGAGCACCAG 59.746 55.000 3.32 0.00 42.56 4.00
3214 5698 2.689785 CGTGACCCGTGCATGCATT 61.690 57.895 25.64 8.76 0.00 3.56
3234 5718 3.567797 GCCGCGCCAGTTCATCTC 61.568 66.667 0.00 0.00 0.00 2.75
3262 5752 3.334583 AACGCCTTATCAGTGATGTGT 57.665 42.857 16.15 8.89 0.00 3.72
3265 5755 3.118629 ACGCCTTATCAGTGATGTGTCAT 60.119 43.478 16.15 0.00 36.60 3.06
3308 5798 1.068474 GCTACTAGTGTGCCAACGTG 58.932 55.000 5.39 0.00 0.00 4.49
3312 5802 0.949105 CTAGTGTGCCAACGTGGGTC 60.949 60.000 11.55 3.53 38.19 4.46
3341 5831 3.570926 AGTGCATGTTTCAATCTGCTG 57.429 42.857 0.00 0.00 35.66 4.41
3371 5861 4.363999 CGTACATTCTGACCCTCTGATTC 58.636 47.826 0.00 0.00 0.00 2.52
3374 5864 4.583871 ACATTCTGACCCTCTGATTCAAC 58.416 43.478 0.00 0.00 0.00 3.18
3392 5882 7.720957 TGATTCAACATGGAAATCTCGGATTAT 59.279 33.333 14.28 0.00 0.00 1.28
3479 5971 4.260702 GCTCTACGTATGTCCTGTCACTAC 60.261 50.000 0.00 0.00 0.00 2.73
3560 6054 0.108615 GCAGGTCGTCAGTATGTGCT 60.109 55.000 0.00 0.00 37.40 4.40
3566 6060 0.807667 CGTCAGTATGTGCTGGGAGC 60.808 60.000 0.00 0.00 36.82 4.70
3592 6086 4.260375 GCAGAGTCAGTGTAACAAACTGTG 60.260 45.833 3.70 5.10 43.20 3.66
3597 6091 5.128171 AGTCAGTGTAACAAACTGTGGAGTA 59.872 40.000 3.70 0.00 44.42 2.59
3598 6092 5.233689 GTCAGTGTAACAAACTGTGGAGTAC 59.766 44.000 3.70 0.00 44.42 2.73
3599 6093 5.128171 TCAGTGTAACAAACTGTGGAGTACT 59.872 40.000 0.00 0.00 44.42 2.73
3600 6094 6.321945 TCAGTGTAACAAACTGTGGAGTACTA 59.678 38.462 0.00 0.00 44.42 1.82
3601 6095 6.982141 CAGTGTAACAAACTGTGGAGTACTAA 59.018 38.462 0.00 0.00 41.43 2.24
3602 6096 7.169308 CAGTGTAACAAACTGTGGAGTACTAAG 59.831 40.741 0.00 0.00 41.43 2.18
3603 6097 7.069085 AGTGTAACAAACTGTGGAGTACTAAGA 59.931 37.037 0.00 0.00 41.43 2.10
3604 6098 7.707893 GTGTAACAAACTGTGGAGTACTAAGAA 59.292 37.037 0.00 0.00 36.32 2.52
3605 6099 7.924412 TGTAACAAACTGTGGAGTACTAAGAAG 59.076 37.037 0.00 0.00 0.00 2.85
3606 6100 6.481434 ACAAACTGTGGAGTACTAAGAAGT 57.519 37.500 0.00 0.00 39.91 3.01
3607 6101 6.885922 ACAAACTGTGGAGTACTAAGAAGTT 58.114 36.000 0.00 1.57 37.15 2.66
3608 6102 8.015185 ACAAACTGTGGAGTACTAAGAAGTTA 57.985 34.615 11.68 0.00 37.15 2.24
3609 6103 7.924947 ACAAACTGTGGAGTACTAAGAAGTTAC 59.075 37.037 11.68 0.00 37.15 2.50
3610 6104 6.251655 ACTGTGGAGTACTAAGAAGTTACG 57.748 41.667 0.00 0.00 37.15 3.18
3611 6105 5.182760 ACTGTGGAGTACTAAGAAGTTACGG 59.817 44.000 0.00 0.00 37.15 4.02
3612 6106 5.316167 TGTGGAGTACTAAGAAGTTACGGA 58.684 41.667 0.00 0.00 37.15 4.69
3613 6107 5.182001 TGTGGAGTACTAAGAAGTTACGGAC 59.818 44.000 0.00 0.00 37.15 4.79
3614 6108 5.414144 GTGGAGTACTAAGAAGTTACGGACT 59.586 44.000 0.00 0.00 41.47 3.85
3628 6122 7.565323 AGTTACGGACTTCTAGTATGTTAGG 57.435 40.000 0.00 0.00 33.92 2.69
3629 6123 6.545298 AGTTACGGACTTCTAGTATGTTAGGG 59.455 42.308 0.00 0.00 33.92 3.53
3630 6124 3.635836 ACGGACTTCTAGTATGTTAGGGC 59.364 47.826 0.00 0.00 0.00 5.19
3631 6125 3.635373 CGGACTTCTAGTATGTTAGGGCA 59.365 47.826 0.00 0.00 0.00 5.36
3632 6126 4.281182 CGGACTTCTAGTATGTTAGGGCAT 59.719 45.833 0.00 0.00 0.00 4.40
3633 6127 5.542779 GGACTTCTAGTATGTTAGGGCATG 58.457 45.833 0.00 0.00 0.00 4.06
3634 6128 5.070580 GGACTTCTAGTATGTTAGGGCATGT 59.929 44.000 0.00 0.00 0.00 3.21
3635 6129 6.267014 GGACTTCTAGTATGTTAGGGCATGTA 59.733 42.308 0.00 0.00 0.00 2.29
3636 6130 7.038941 GGACTTCTAGTATGTTAGGGCATGTAT 60.039 40.741 0.00 0.00 0.00 2.29
3637 6131 8.951614 ACTTCTAGTATGTTAGGGCATGTATA 57.048 34.615 0.00 0.00 0.00 1.47
3638 6132 9.375974 ACTTCTAGTATGTTAGGGCATGTATAA 57.624 33.333 0.00 0.00 0.00 0.98
3641 6135 8.758829 TCTAGTATGTTAGGGCATGTATAATGG 58.241 37.037 0.00 0.00 0.00 3.16
3642 6136 7.329746 AGTATGTTAGGGCATGTATAATGGT 57.670 36.000 0.00 0.00 0.00 3.55
3643 6137 7.755618 AGTATGTTAGGGCATGTATAATGGTT 58.244 34.615 0.00 0.00 0.00 3.67
3644 6138 7.883311 AGTATGTTAGGGCATGTATAATGGTTC 59.117 37.037 0.00 0.00 0.00 3.62
3645 6139 6.260700 TGTTAGGGCATGTATAATGGTTCT 57.739 37.500 0.00 0.00 0.00 3.01
3646 6140 7.381789 TGTTAGGGCATGTATAATGGTTCTA 57.618 36.000 0.00 0.00 0.00 2.10
3647 6141 7.984475 TGTTAGGGCATGTATAATGGTTCTAT 58.016 34.615 0.00 0.00 0.00 1.98
3648 6142 8.100791 TGTTAGGGCATGTATAATGGTTCTATC 58.899 37.037 0.00 0.00 0.00 2.08
3649 6143 6.959606 AGGGCATGTATAATGGTTCTATCT 57.040 37.500 0.00 0.00 0.00 1.98
3650 6144 7.335127 AGGGCATGTATAATGGTTCTATCTT 57.665 36.000 0.00 0.00 0.00 2.40
3651 6145 8.449423 AGGGCATGTATAATGGTTCTATCTTA 57.551 34.615 0.00 0.00 0.00 2.10
3652 6146 8.543774 AGGGCATGTATAATGGTTCTATCTTAG 58.456 37.037 0.00 0.00 0.00 2.18
3653 6147 7.281100 GGGCATGTATAATGGTTCTATCTTAGC 59.719 40.741 0.00 0.00 0.00 3.09
3654 6148 7.824289 GGCATGTATAATGGTTCTATCTTAGCA 59.176 37.037 0.00 0.00 0.00 3.49
3655 6149 9.219603 GCATGTATAATGGTTCTATCTTAGCAA 57.780 33.333 0.00 0.00 0.00 3.91
3658 6152 9.219603 TGTATAATGGTTCTATCTTAGCAATGC 57.780 33.333 0.00 0.00 0.00 3.56
3659 6153 7.693969 ATAATGGTTCTATCTTAGCAATGCC 57.306 36.000 0.00 0.00 0.00 4.40
3660 6154 4.502105 TGGTTCTATCTTAGCAATGCCA 57.498 40.909 0.00 0.00 0.00 4.92
3661 6155 5.052693 TGGTTCTATCTTAGCAATGCCAT 57.947 39.130 0.00 0.00 0.00 4.40
3662 6156 4.823442 TGGTTCTATCTTAGCAATGCCATG 59.177 41.667 0.00 0.00 0.00 3.66
3663 6157 4.823989 GGTTCTATCTTAGCAATGCCATGT 59.176 41.667 0.00 0.00 0.00 3.21
3664 6158 5.997746 GGTTCTATCTTAGCAATGCCATGTA 59.002 40.000 0.00 0.00 0.00 2.29
3665 6159 6.148480 GGTTCTATCTTAGCAATGCCATGTAG 59.852 42.308 0.00 0.00 0.00 2.74
3666 6160 5.798132 TCTATCTTAGCAATGCCATGTAGG 58.202 41.667 0.00 0.00 41.84 3.18
3667 6161 4.712051 ATCTTAGCAATGCCATGTAGGA 57.288 40.909 0.00 0.00 41.22 2.94
3668 6162 4.712051 TCTTAGCAATGCCATGTAGGAT 57.288 40.909 0.00 0.00 41.22 3.24
3669 6163 5.823861 TCTTAGCAATGCCATGTAGGATA 57.176 39.130 0.00 0.00 41.22 2.59
3670 6164 6.186420 TCTTAGCAATGCCATGTAGGATAA 57.814 37.500 0.00 0.00 41.22 1.75
3671 6165 6.600388 TCTTAGCAATGCCATGTAGGATAAA 58.400 36.000 0.00 0.00 41.22 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 1.674817 GCGGGAGATCGAGTCCAAAAA 60.675 52.381 16.40 0.00 35.57 1.94
57 58 0.108329 GCGGGAGATCGAGTCCAAAA 60.108 55.000 16.40 0.00 35.57 2.44
61 62 3.035727 GAGCGGGAGATCGAGTCC 58.964 66.667 7.90 7.90 34.62 3.85
119 1855 9.243105 AGACAAAGTTACCAATAGCAAATGTAT 57.757 29.630 0.00 0.00 0.00 2.29
121 1857 7.230510 TCAGACAAAGTTACCAATAGCAAATGT 59.769 33.333 0.00 0.00 0.00 2.71
138 1874 8.182881 TGGCAAATTTTTCATTTTCAGACAAAG 58.817 29.630 0.00 0.00 0.00 2.77
140 1876 7.621428 TGGCAAATTTTTCATTTTCAGACAA 57.379 28.000 0.00 0.00 0.00 3.18
153 1889 4.388485 AGAAAATCGGCTGGCAAATTTTT 58.612 34.783 18.71 10.89 32.90 1.94
159 1895 1.000731 CCAAAGAAAATCGGCTGGCAA 59.999 47.619 1.08 0.00 0.00 4.52
165 1901 2.095212 GTCCTCACCAAAGAAAATCGGC 60.095 50.000 0.00 0.00 0.00 5.54
178 1914 2.358737 CACCGCCTTGTCCTCACC 60.359 66.667 0.00 0.00 0.00 4.02
220 1969 1.204062 CCGTAGTTGTGTTGCTGCG 59.796 57.895 0.00 0.00 39.79 5.18
240 1989 2.016704 CTCACGCACGTCTCACACC 61.017 63.158 0.00 0.00 0.00 4.16
241 1990 0.040692 TACTCACGCACGTCTCACAC 60.041 55.000 0.00 0.00 0.00 3.82
243 1992 1.050767 GTTACTCACGCACGTCTCAC 58.949 55.000 0.00 0.00 0.00 3.51
270 2646 7.619698 CCACTATGAATATACTCCCCACTATGA 59.380 40.741 0.00 0.00 0.00 2.15
271 2647 7.147655 CCCACTATGAATATACTCCCCACTATG 60.148 44.444 0.00 0.00 0.00 2.23
274 2650 5.094387 CCCACTATGAATATACTCCCCACT 58.906 45.833 0.00 0.00 0.00 4.00
276 2652 5.101254 ACCCACTATGAATATACTCCCCA 57.899 43.478 0.00 0.00 0.00 4.96
285 2661 8.950210 GCGTAATACTACTACCCACTATGAATA 58.050 37.037 0.00 0.00 0.00 1.75
293 2669 4.805719 GGTTTGCGTAATACTACTACCCAC 59.194 45.833 0.00 0.00 0.00 4.61
300 2676 8.876790 AGTAAATGAAGGTTTGCGTAATACTAC 58.123 33.333 0.00 0.00 0.00 2.73
302 2678 7.916914 AGTAAATGAAGGTTTGCGTAATACT 57.083 32.000 0.00 0.00 0.00 2.12
306 2682 9.968870 ATTTTTAGTAAATGAAGGTTTGCGTAA 57.031 25.926 0.00 0.00 0.00 3.18
333 2709 5.221048 GCACCACAAGACAAAGTGAGTTTAT 60.221 40.000 0.00 0.00 37.97 1.40
336 2712 2.423538 GCACCACAAGACAAAGTGAGTT 59.576 45.455 0.00 0.00 37.97 3.01
342 2718 1.225855 TAGCGCACCACAAGACAAAG 58.774 50.000 11.47 0.00 0.00 2.77
352 2728 2.033294 TGGCAACATAGCGCACCA 59.967 55.556 11.47 2.03 46.17 4.17
366 2742 2.362736 TGATGAAGAGATGCTTGTGGC 58.637 47.619 0.00 0.00 36.83 5.01
382 2758 7.922837 TGCTTATGTGACATCTGTTAATGATG 58.077 34.615 0.00 15.43 44.79 3.07
390 2766 8.340618 AGTAAATTTGCTTATGTGACATCTGT 57.659 30.769 0.00 0.00 0.00 3.41
391 2767 9.630098 AAAGTAAATTTGCTTATGTGACATCTG 57.370 29.630 19.94 0.00 32.69 2.90
394 2770 8.584157 TGGAAAGTAAATTTGCTTATGTGACAT 58.416 29.630 19.94 2.65 39.77 3.06
396 2772 8.082242 ACTGGAAAGTAAATTTGCTTATGTGAC 58.918 33.333 19.94 8.91 39.77 3.67
397 2773 8.081633 CACTGGAAAGTAAATTTGCTTATGTGA 58.918 33.333 19.94 4.56 39.77 3.58
398 2774 7.867403 ACACTGGAAAGTAAATTTGCTTATGTG 59.133 33.333 19.94 22.57 39.77 3.21
399 2775 7.867403 CACACTGGAAAGTAAATTTGCTTATGT 59.133 33.333 19.94 15.52 39.77 2.29
409 2785 5.074804 GGGGTAACACACTGGAAAGTAAAT 58.925 41.667 0.00 0.00 42.67 1.40
436 2814 1.923864 GCACACCTTTTGTTTGGAACG 59.076 47.619 0.00 0.00 35.67 3.95
437 2815 2.670905 GTGCACACCTTTTGTTTGGAAC 59.329 45.455 13.17 0.00 35.67 3.62
439 2817 1.135257 CGTGCACACCTTTTGTTTGGA 60.135 47.619 18.64 0.00 35.67 3.53
441 2819 0.644843 GCGTGCACACCTTTTGTTTG 59.355 50.000 18.64 0.00 35.67 2.93
443 2821 0.459489 ATGCGTGCACACCTTTTGTT 59.541 45.000 18.64 0.00 35.67 2.83
445 2823 0.311790 AGATGCGTGCACACCTTTTG 59.688 50.000 18.64 0.00 0.00 2.44
447 2825 0.534877 TGAGATGCGTGCACACCTTT 60.535 50.000 18.64 0.00 0.00 3.11
451 2829 2.118228 TTTTTGAGATGCGTGCACAC 57.882 45.000 18.64 7.98 0.00 3.82
454 2832 3.004629 AGTTGATTTTTGAGATGCGTGCA 59.995 39.130 0.00 0.00 0.00 4.57
461 2839 6.906157 ATGGTCACAGTTGATTTTTGAGAT 57.094 33.333 0.00 0.00 33.11 2.75
462 2840 7.815840 TTATGGTCACAGTTGATTTTTGAGA 57.184 32.000 0.00 0.00 33.11 3.27
470 2848 7.402054 TGGTCTAATTTATGGTCACAGTTGAT 58.598 34.615 0.00 0.00 33.11 2.57
472 2850 7.305474 GTTGGTCTAATTTATGGTCACAGTTG 58.695 38.462 0.00 0.00 0.00 3.16
475 2853 5.943416 TGGTTGGTCTAATTTATGGTCACAG 59.057 40.000 0.00 0.00 0.00 3.66
477 2855 6.433093 AGTTGGTTGGTCTAATTTATGGTCAC 59.567 38.462 0.00 0.00 0.00 3.67
498 2876 7.972623 TTTTATCACGTAAAACCAACAGTTG 57.027 32.000 6.28 6.28 39.19 3.16
552 2930 9.896263 TGAGTTAAAAATTATACCACCGAAAAC 57.104 29.630 0.00 0.00 0.00 2.43
557 2935 9.680315 TTTTGTGAGTTAAAAATTATACCACCG 57.320 29.630 0.00 0.00 0.00 4.94
606 2984 5.180492 ACGCTTTCGAAAAATCAAGACCATA 59.820 36.000 12.41 0.00 39.41 2.74
622 3000 0.316689 AAAAAGGACGCACGCTTTCG 60.317 50.000 0.00 0.00 42.43 3.46
645 3023 7.783119 ACTTACATAGTGACATACTCCATACCA 59.217 37.037 0.00 0.00 40.89 3.25
663 3042 4.141574 GCCATGGTGGGAGTAACTTACATA 60.142 45.833 14.67 0.00 38.19 2.29
677 3056 4.130118 GTCATTAAGACTAGCCATGGTGG 58.870 47.826 14.67 6.41 44.09 4.61
681 3060 6.017605 GTCAATGGTCATTAAGACTAGCCATG 60.018 42.308 0.00 0.00 46.72 3.66
685 3064 6.763135 TCATGTCAATGGTCATTAAGACTAGC 59.237 38.462 12.32 0.00 46.72 3.42
686 3065 8.899427 ATCATGTCAATGGTCATTAAGACTAG 57.101 34.615 12.32 0.00 46.72 2.57
714 3093 4.238514 CAAACGGTGTGACCTTTCAAAAA 58.761 39.130 0.00 0.00 35.66 1.94
847 3227 1.757118 CACTGCCGAGGAAATAGAGGA 59.243 52.381 0.00 0.00 0.00 3.71
860 3240 2.923020 GCCAATGTATTTTTCACTGCCG 59.077 45.455 0.00 0.00 0.00 5.69
954 3334 6.322201 TCTTGAGAAGTTTCTTGGAAGCAAAT 59.678 34.615 0.00 0.00 37.73 2.32
958 3338 5.757850 TTCTTGAGAAGTTTCTTGGAAGC 57.242 39.130 0.00 0.00 37.73 3.86
991 3371 2.629790 GGAAAGATCCATGGCAGTGCC 61.630 57.143 28.01 28.01 46.77 5.01
1021 3401 2.683933 GAGGGAGTCTTCCGGGCA 60.684 66.667 0.00 0.00 45.04 5.36
1497 3880 1.735376 GCGTCCCAATAGAGGAGCGA 61.735 60.000 0.00 0.00 32.84 4.93
1635 4018 2.172505 TCCTTCTTGGCTTGTGAAGTCA 59.827 45.455 0.00 0.00 42.29 3.41
1656 4039 1.032657 CCATCTCCTCCACGACGACT 61.033 60.000 0.00 0.00 0.00 4.18
1658 4041 0.253894 TACCATCTCCTCCACGACGA 59.746 55.000 0.00 0.00 0.00 4.20
1660 4043 2.734492 CGTTTACCATCTCCTCCACGAC 60.734 54.545 0.00 0.00 0.00 4.34
1703 4086 1.271597 GGTGATCTGCCCAGTTGAACT 60.272 52.381 0.00 0.00 0.00 3.01
1761 4144 3.463728 TAACCTGTTGCACCGGCGT 62.464 57.895 6.01 0.00 45.35 5.68
2078 4463 4.415332 CACCGTGTCCGTCCCTCG 62.415 72.222 0.00 0.00 39.52 4.63
2594 4979 2.179517 CTCTGACAGGTCGACGCC 59.820 66.667 9.92 0.00 0.00 5.68
2617 5002 1.863267 CCATCTCCAGCGACATCTTC 58.137 55.000 0.00 0.00 0.00 2.87
2808 5196 4.154918 GGAGATGACCAAAAAGCAGTAGTG 59.845 45.833 0.00 0.00 0.00 2.74
2892 5283 4.753186 AGTAACCCATGGCTAGCTATAGT 58.247 43.478 13.80 11.23 0.00 2.12
2936 5330 0.812811 ATCAAGACAGCATGCGCGAT 60.813 50.000 12.10 6.40 45.49 4.58
2939 5333 1.063649 CCATCAAGACAGCATGCGC 59.936 57.895 13.01 0.00 42.53 6.09
3001 5399 4.037446 CCAGATGTTTCTCCCGAACAAAAA 59.963 41.667 0.00 0.00 0.00 1.94
3063 5461 4.111916 ACAAATTTTCTTGAAGCACCACG 58.888 39.130 0.00 0.00 0.00 4.94
3066 5464 6.503524 TCACTACAAATTTTCTTGAAGCACC 58.496 36.000 0.00 0.00 0.00 5.01
3168 5566 2.562738 GGTGCTCAGGCCACTAATTTTT 59.437 45.455 5.01 0.00 37.74 1.94
3169 5567 2.171003 GGTGCTCAGGCCACTAATTTT 58.829 47.619 5.01 0.00 37.74 1.82
3171 5569 0.698238 TGGTGCTCAGGCCACTAATT 59.302 50.000 5.01 0.00 37.74 1.40
3172 5570 0.254178 CTGGTGCTCAGGCCACTAAT 59.746 55.000 5.01 0.00 39.76 1.73
3173 5571 0.835971 TCTGGTGCTCAGGCCACTAA 60.836 55.000 5.01 0.00 43.53 2.24
3174 5572 0.835971 TTCTGGTGCTCAGGCCACTA 60.836 55.000 5.01 0.00 43.53 2.74
3175 5573 2.149383 TTCTGGTGCTCAGGCCACT 61.149 57.895 5.01 0.00 43.53 4.00
3178 5576 1.376553 GAGTTCTGGTGCTCAGGCC 60.377 63.158 0.00 0.00 43.53 5.19
3179 5577 1.739562 CGAGTTCTGGTGCTCAGGC 60.740 63.158 7.57 0.00 43.53 4.85
3219 5703 3.257561 CCGAGATGAACTGGCGCG 61.258 66.667 0.00 0.00 0.00 6.86
3224 5708 3.423123 GCGTTTGTAACCGAGATGAACTG 60.423 47.826 0.00 0.00 0.00 3.16
3227 5711 2.070783 GGCGTTTGTAACCGAGATGAA 58.929 47.619 0.00 0.00 0.00 2.57
3228 5712 1.274167 AGGCGTTTGTAACCGAGATGA 59.726 47.619 0.00 0.00 0.00 2.92
3229 5713 1.722011 AGGCGTTTGTAACCGAGATG 58.278 50.000 0.00 0.00 0.00 2.90
3230 5714 2.467566 AAGGCGTTTGTAACCGAGAT 57.532 45.000 0.00 0.00 0.00 2.75
3231 5715 3.056678 TGATAAGGCGTTTGTAACCGAGA 60.057 43.478 0.00 0.00 0.00 4.04
3232 5716 3.255725 TGATAAGGCGTTTGTAACCGAG 58.744 45.455 0.00 0.00 0.00 4.63
3233 5717 3.255725 CTGATAAGGCGTTTGTAACCGA 58.744 45.455 0.00 0.00 0.00 4.69
3234 5718 2.997986 ACTGATAAGGCGTTTGTAACCG 59.002 45.455 0.00 0.00 0.00 4.44
3265 5755 2.422597 CGGCTTAACACATGAACCTCA 58.577 47.619 0.00 0.00 0.00 3.86
3292 5782 1.070786 CCCACGTTGGCACACTAGT 59.929 57.895 0.00 0.00 39.29 2.57
3308 5798 1.033574 ATGCACTAGTAGCTCGACCC 58.966 55.000 15.28 0.00 0.00 4.46
3312 5802 3.511699 TGAAACATGCACTAGTAGCTCG 58.488 45.455 15.28 10.12 0.00 5.03
3341 5831 2.531206 GTCAGAATGTACGCAGAGGTC 58.469 52.381 0.00 0.00 37.40 3.85
3371 5861 5.532406 ACCATAATCCGAGATTTCCATGTTG 59.468 40.000 4.76 0.00 0.00 3.33
3374 5864 6.262944 TGAAACCATAATCCGAGATTTCCATG 59.737 38.462 4.76 3.76 0.00 3.66
3479 5971 5.106869 CCAACCATCAACTGCAATTTTCATG 60.107 40.000 0.00 0.00 0.00 3.07
3560 6054 2.203832 TGACTCTGCTGGCTCCCA 60.204 61.111 0.00 0.00 0.00 4.37
3566 6060 2.820059 TGTTACACTGACTCTGCTGG 57.180 50.000 0.00 0.00 0.00 4.85
3592 6086 6.507958 AAGTCCGTAACTTCTTAGTACTCC 57.492 41.667 0.00 0.00 45.28 3.85
3604 6098 6.545298 CCCTAACATACTAGAAGTCCGTAACT 59.455 42.308 0.00 0.00 41.10 2.24
3605 6099 6.733145 CCCTAACATACTAGAAGTCCGTAAC 58.267 44.000 0.00 0.00 0.00 2.50
3606 6100 5.300286 GCCCTAACATACTAGAAGTCCGTAA 59.700 44.000 0.00 0.00 0.00 3.18
3607 6101 4.823989 GCCCTAACATACTAGAAGTCCGTA 59.176 45.833 0.00 0.00 0.00 4.02
3608 6102 3.635836 GCCCTAACATACTAGAAGTCCGT 59.364 47.826 0.00 0.00 0.00 4.69
3609 6103 3.635373 TGCCCTAACATACTAGAAGTCCG 59.365 47.826 0.00 0.00 0.00 4.79
3610 6104 5.070580 ACATGCCCTAACATACTAGAAGTCC 59.929 44.000 0.00 0.00 0.00 3.85
3611 6105 6.163135 ACATGCCCTAACATACTAGAAGTC 57.837 41.667 0.00 0.00 0.00 3.01
3612 6106 7.857404 ATACATGCCCTAACATACTAGAAGT 57.143 36.000 0.00 0.00 0.00 3.01
3615 6109 8.758829 CCATTATACATGCCCTAACATACTAGA 58.241 37.037 0.00 0.00 0.00 2.43
3616 6110 8.540388 ACCATTATACATGCCCTAACATACTAG 58.460 37.037 0.00 0.00 0.00 2.57
3617 6111 8.444010 ACCATTATACATGCCCTAACATACTA 57.556 34.615 0.00 0.00 0.00 1.82
3618 6112 7.329746 ACCATTATACATGCCCTAACATACT 57.670 36.000 0.00 0.00 0.00 2.12
3619 6113 7.883311 AGAACCATTATACATGCCCTAACATAC 59.117 37.037 0.00 0.00 0.00 2.39
3620 6114 7.984475 AGAACCATTATACATGCCCTAACATA 58.016 34.615 0.00 0.00 0.00 2.29
3621 6115 6.852404 AGAACCATTATACATGCCCTAACAT 58.148 36.000 0.00 0.00 0.00 2.71
3622 6116 6.260700 AGAACCATTATACATGCCCTAACA 57.739 37.500 0.00 0.00 0.00 2.41
3623 6117 8.322091 AGATAGAACCATTATACATGCCCTAAC 58.678 37.037 0.00 0.00 0.00 2.34
3624 6118 8.449423 AGATAGAACCATTATACATGCCCTAA 57.551 34.615 0.00 0.00 0.00 2.69
3625 6119 8.449423 AAGATAGAACCATTATACATGCCCTA 57.551 34.615 0.00 0.00 0.00 3.53
3626 6120 6.959606 AGATAGAACCATTATACATGCCCT 57.040 37.500 0.00 0.00 0.00 5.19
3627 6121 7.281100 GCTAAGATAGAACCATTATACATGCCC 59.719 40.741 0.00 0.00 0.00 5.36
3628 6122 7.824289 TGCTAAGATAGAACCATTATACATGCC 59.176 37.037 0.00 0.00 0.00 4.40
3629 6123 8.777865 TGCTAAGATAGAACCATTATACATGC 57.222 34.615 0.00 0.00 0.00 4.06
3632 6126 9.219603 GCATTGCTAAGATAGAACCATTATACA 57.780 33.333 0.16 0.00 0.00 2.29
3633 6127 8.669243 GGCATTGCTAAGATAGAACCATTATAC 58.331 37.037 8.82 0.00 0.00 1.47
3634 6128 8.382405 TGGCATTGCTAAGATAGAACCATTATA 58.618 33.333 8.82 0.00 0.00 0.98
3635 6129 7.233632 TGGCATTGCTAAGATAGAACCATTAT 58.766 34.615 8.82 0.00 0.00 1.28
3636 6130 6.600388 TGGCATTGCTAAGATAGAACCATTA 58.400 36.000 8.82 0.00 0.00 1.90
3637 6131 5.448654 TGGCATTGCTAAGATAGAACCATT 58.551 37.500 8.82 0.00 0.00 3.16
3638 6132 5.052693 TGGCATTGCTAAGATAGAACCAT 57.947 39.130 8.82 0.00 0.00 3.55
3639 6133 4.502105 TGGCATTGCTAAGATAGAACCA 57.498 40.909 8.82 0.00 0.00 3.67
3640 6134 4.823989 ACATGGCATTGCTAAGATAGAACC 59.176 41.667 8.82 0.00 0.00 3.62
3641 6135 6.148480 CCTACATGGCATTGCTAAGATAGAAC 59.852 42.308 8.82 0.00 0.00 3.01
3642 6136 6.043127 TCCTACATGGCATTGCTAAGATAGAA 59.957 38.462 8.82 0.00 35.26 2.10
3643 6137 5.543790 TCCTACATGGCATTGCTAAGATAGA 59.456 40.000 8.82 0.00 35.26 1.98
3644 6138 5.798132 TCCTACATGGCATTGCTAAGATAG 58.202 41.667 8.82 6.17 35.26 2.08
3645 6139 5.823861 TCCTACATGGCATTGCTAAGATA 57.176 39.130 8.82 0.00 35.26 1.98
3646 6140 4.712051 TCCTACATGGCATTGCTAAGAT 57.288 40.909 8.82 0.00 35.26 2.40
3647 6141 4.712051 ATCCTACATGGCATTGCTAAGA 57.288 40.909 8.82 0.00 35.26 2.10
3648 6142 6.882610 TTTATCCTACATGGCATTGCTAAG 57.117 37.500 8.82 1.77 35.26 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.