Multiple sequence alignment - TraesCS2B01G201700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G201700 chr2B 100.000 4580 0 0 1 4580 180620271 180615692 0.000000e+00 8458.0
1 TraesCS2B01G201700 chr2B 88.871 620 68 1 3308 3927 180613993 180614611 0.000000e+00 761.0
2 TraesCS2B01G201700 chr2B 95.570 474 15 4 2327 2795 61125056 61125528 0.000000e+00 754.0
3 TraesCS2B01G201700 chr2B 84.105 497 51 8 3931 4427 180614704 180615172 5.400000e-124 455.0
4 TraesCS2B01G201700 chr2B 98.256 172 2 1 2149 2320 254691625 254691795 2.680000e-77 300.0
5 TraesCS2B01G201700 chr2B 94.545 165 9 0 2452 2616 61922340 61922504 5.880000e-64 255.0
6 TraesCS2B01G201700 chr2B 98.810 84 1 0 2860 2943 61125536 61125619 2.850000e-32 150.0
7 TraesCS2B01G201700 chr2D 93.608 2159 98 21 5 2150 127005154 127003023 0.000000e+00 3186.0
8 TraesCS2B01G201700 chr2D 92.985 1568 86 9 3016 4580 127002426 127000880 0.000000e+00 2265.0
9 TraesCS2B01G201700 chr2D 89.264 1481 131 9 3099 4578 126999119 127000572 0.000000e+00 1829.0
10 TraesCS2B01G201700 chr2D 96.957 493 10 1 2311 2798 127003024 127002532 0.000000e+00 822.0
11 TraesCS2B01G201700 chr2D 86.653 472 48 11 852 1317 80982757 80983219 4.090000e-140 508.0
12 TraesCS2B01G201700 chr2D 84.167 480 56 14 840 1317 42696401 42696862 9.040000e-122 448.0
13 TraesCS2B01G201700 chr2D 98.969 97 1 0 2860 2956 127002527 127002431 1.690000e-39 174.0
14 TraesCS2B01G201700 chr2D 87.273 110 7 6 4155 4261 12605284 12605389 8.050000e-23 119.0
15 TraesCS2B01G201700 chr2A 96.805 1753 51 5 5 1757 133707753 133706006 0.000000e+00 2922.0
16 TraesCS2B01G201700 chr2A 90.878 1480 109 9 3016 4488 133705043 133703583 0.000000e+00 1962.0
17 TraesCS2B01G201700 chr2A 85.844 770 90 5 3585 4345 133702774 133703533 0.000000e+00 800.0
18 TraesCS2B01G201700 chr2A 93.939 495 15 8 2311 2798 133705641 133705155 0.000000e+00 734.0
19 TraesCS2B01G201700 chr2A 90.574 488 45 1 3099 3586 133702184 133702670 0.000000e+00 645.0
20 TraesCS2B01G201700 chr2A 95.957 371 13 1 1782 2150 133706010 133705640 6.560000e-168 601.0
21 TraesCS2B01G201700 chr2A 87.619 105 5 4 2859 2956 133705151 133705048 1.040000e-21 115.0
22 TraesCS2B01G201700 chr5A 86.378 624 68 14 844 1460 110674692 110674079 0.000000e+00 665.0
23 TraesCS2B01G201700 chr5B 83.713 614 85 11 854 1460 117909077 117908472 2.390000e-157 566.0
24 TraesCS2B01G201700 chr6D 86.910 466 52 8 852 1315 438551080 438550622 8.790000e-142 514.0
25 TraesCS2B01G201700 chr6D 80.449 312 45 10 4254 4564 309715976 309716272 1.660000e-54 224.0
26 TraesCS2B01G201700 chr6D 89.344 122 13 0 1359 1480 438550608 438550487 2.210000e-33 154.0
27 TraesCS2B01G201700 chr1A 85.381 472 53 13 852 1317 44978628 44979089 4.150000e-130 475.0
28 TraesCS2B01G201700 chr5D 86.644 292 35 3 852 1143 497234659 497234372 2.060000e-83 320.0
29 TraesCS2B01G201700 chr5D 89.000 100 9 2 4163 4261 332500272 332500174 6.220000e-24 122.0
30 TraesCS2B01G201700 chr7B 97.126 174 5 0 2146 2319 371736859 371736686 1.250000e-75 294.0
31 TraesCS2B01G201700 chr7B 98.204 167 3 0 2148 2314 710104884 710105050 4.480000e-75 292.0
32 TraesCS2B01G201700 chr7B 98.204 167 3 0 2148 2314 710116493 710116659 4.480000e-75 292.0
33 TraesCS2B01G201700 chr7B 98.204 167 3 0 2148 2314 710127593 710127759 4.480000e-75 292.0
34 TraesCS2B01G201700 chr7B 93.333 165 11 0 2452 2616 76935693 76935857 1.270000e-60 244.0
35 TraesCS2B01G201700 chr7B 79.344 305 48 4 4261 4565 183549746 183549457 2.790000e-47 200.0
36 TraesCS2B01G201700 chr1B 98.193 166 3 0 2147 2312 317434420 317434585 1.610000e-74 291.0
37 TraesCS2B01G201700 chr1B 97.576 165 4 0 2148 2312 378942820 378942656 2.700000e-72 283.0
38 TraesCS2B01G201700 chr1B 94.545 165 9 0 2452 2616 96875204 96875368 5.880000e-64 255.0
39 TraesCS2B01G201700 chr1B 89.899 99 9 1 4163 4261 253011228 253011131 4.810000e-25 126.0
40 TraesCS2B01G201700 chr6B 97.605 167 4 0 2149 2315 189278109 189277943 2.090000e-73 287.0
41 TraesCS2B01G201700 chr6B 83.621 232 36 2 4348 4578 477618160 477618390 2.770000e-52 217.0
42 TraesCS2B01G201700 chr6B 88.000 75 8 1 1123 1197 197771523 197771450 2.270000e-13 87.9
43 TraesCS2B01G201700 chr3B 97.041 169 4 1 2144 2312 760604968 760605135 2.700000e-72 283.0
44 TraesCS2B01G201700 chr3B 86.147 231 27 4 4349 4578 678231636 678231410 1.270000e-60 244.0
45 TraesCS2B01G201700 chr3B 84.163 221 34 1 4355 4575 202942471 202942690 3.590000e-51 213.0
46 TraesCS2B01G201700 chr3A 87.255 204 25 1 4355 4558 649956828 649956626 9.910000e-57 231.0
47 TraesCS2B01G201700 chr3D 86.224 196 25 2 4384 4578 515736876 515736682 1.290000e-50 211.0
48 TraesCS2B01G201700 chrUn 92.000 100 6 2 4163 4261 96558717 96558619 6.180000e-29 139.0
49 TraesCS2B01G201700 chr6A 89.000 100 7 4 4163 4261 208690109 208690013 2.240000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G201700 chr2B 180615692 180620271 4579 True 8458.00 8458 100.00000 1 4580 1 chr2B.!!$R1 4579
1 TraesCS2B01G201700 chr2B 180613993 180615172 1179 False 608.00 761 86.48800 3308 4427 2 chr2B.!!$F4 1119
2 TraesCS2B01G201700 chr2B 61125056 61125619 563 False 452.00 754 97.19000 2327 2943 2 chr2B.!!$F3 616
3 TraesCS2B01G201700 chr2D 126999119 127000572 1453 False 1829.00 1829 89.26400 3099 4578 1 chr2D.!!$F4 1479
4 TraesCS2B01G201700 chr2D 127000880 127005154 4274 True 1611.75 3186 95.62975 5 4580 4 chr2D.!!$R1 4575
5 TraesCS2B01G201700 chr2A 133703583 133707753 4170 True 1266.80 2922 93.03960 5 4488 5 chr2A.!!$R1 4483
6 TraesCS2B01G201700 chr2A 133702184 133703533 1349 False 722.50 800 88.20900 3099 4345 2 chr2A.!!$F1 1246
7 TraesCS2B01G201700 chr5A 110674079 110674692 613 True 665.00 665 86.37800 844 1460 1 chr5A.!!$R1 616
8 TraesCS2B01G201700 chr5B 117908472 117909077 605 True 566.00 566 83.71300 854 1460 1 chr5B.!!$R1 606
9 TraesCS2B01G201700 chr6D 438550487 438551080 593 True 334.00 514 88.12700 852 1480 2 chr6D.!!$R1 628

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
652 653 0.320683 TCACATGCCTCTGTTCACCG 60.321 55.000 0.0 0.0 0.00 4.94 F
661 662 1.608590 CTCTGTTCACCGTTTTGGCAT 59.391 47.619 0.0 0.0 43.94 4.40 F
1965 1987 3.380320 AGTCAAAAGTGTAAGTGTTGGCC 59.620 43.478 0.0 0.0 0.00 5.36 F
2891 2927 0.763986 ACCAGTGCCCTTGCCATTTT 60.764 50.000 0.0 0.0 36.33 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 2117 0.403271 ACAACTCTGAGCCAAGGCAT 59.597 50.0 14.40 0.00 44.88 4.40 R
2094 2118 1.055849 TACAACTCTGAGCCAAGGCA 58.944 50.0 14.40 0.00 44.88 4.75 R
2989 3031 0.108992 TCAGTATCACGGCGGAACAC 60.109 55.0 13.24 8.34 0.00 3.32 R
4336 4588 0.612174 TCTGAGGGTGAGTTCGGAGG 60.612 60.0 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.661752 TCAATGGTAGATCTATCATCTCATGT 57.338 34.615 25.31 9.00 35.96 3.21
29 30 9.759473 TCAATGGTAGATCTATCATCTCATGTA 57.241 33.333 25.31 9.88 35.96 2.29
294 295 6.439636 AGCTTGTAGAAGGATGCCATATTA 57.560 37.500 1.31 0.00 0.00 0.98
365 366 5.010112 TCACTCTTCTGTGTTCTAGAAGGTG 59.990 44.000 5.12 19.15 47.00 4.00
388 389 4.765339 GGCCCCATGTTGTAATATTCTACC 59.235 45.833 0.00 0.00 0.00 3.18
475 476 4.510038 AAGTGACAAAATAGCCTTGCTG 57.490 40.909 0.00 0.00 40.10 4.41
652 653 0.320683 TCACATGCCTCTGTTCACCG 60.321 55.000 0.00 0.00 0.00 4.94
661 662 1.608590 CTCTGTTCACCGTTTTGGCAT 59.391 47.619 0.00 0.00 43.94 4.40
963 968 4.517952 TTGTGCAGGATTATTTGGTGTG 57.482 40.909 0.00 0.00 0.00 3.82
975 980 6.988622 TTATTTGGTGTGGTAATAACTCGG 57.011 37.500 0.00 0.00 0.00 4.63
1038 1044 4.454678 CTGCCTCATATGAGCCAAAACTA 58.545 43.478 24.81 0.00 40.75 2.24
1495 1504 8.140112 ACCTAGAGCATATATTAGTTTCTGGG 57.860 38.462 0.00 0.00 37.70 4.45
1539 1548 7.916977 TCATTTTACATTGTGCTTATGAGATGC 59.083 33.333 0.00 0.00 0.00 3.91
1559 1568 7.683578 AGATGCTATTTATACCTTGCATGAGA 58.316 34.615 0.00 0.00 40.58 3.27
1621 1630 3.882131 GCCAATAGCAGTTCCCAGA 57.118 52.632 0.00 0.00 42.97 3.86
1679 1688 6.538945 TTCTGTACTGCATATGGTGTTAGA 57.461 37.500 4.56 0.00 0.00 2.10
1690 1699 7.920151 TGCATATGGTGTTAGATTACAATTTGC 59.080 33.333 4.56 0.00 30.54 3.68
1767 1776 6.989169 ACTGTAGATATCTCAAATCAAGTGCC 59.011 38.462 8.95 0.00 0.00 5.01
1770 1779 6.879276 AGATATCTCAAATCAAGTGCCATG 57.121 37.500 0.00 0.00 0.00 3.66
1773 1782 3.489355 TCTCAAATCAAGTGCCATGTGT 58.511 40.909 0.00 0.00 0.00 3.72
1784 1793 5.116084 AGTGCCATGTGTAATGGAGTATT 57.884 39.130 8.55 0.00 41.64 1.89
1804 1813 9.826574 GAGTATTATTATTGGTGTCCACTGTTA 57.173 33.333 0.00 0.00 30.78 2.41
1805 1814 9.832445 AGTATTATTATTGGTGTCCACTGTTAG 57.168 33.333 0.00 0.00 30.78 2.34
1913 1935 5.389859 TTGGTGCTTGATAAATGTCCAAG 57.610 39.130 0.00 0.00 40.00 3.61
1962 1984 7.534085 TCAGTAGTCAAAAGTGTAAGTGTTG 57.466 36.000 0.00 0.00 0.00 3.33
1963 1985 6.537301 TCAGTAGTCAAAAGTGTAAGTGTTGG 59.463 38.462 0.00 0.00 0.00 3.77
1965 1987 3.380320 AGTCAAAAGTGTAAGTGTTGGCC 59.620 43.478 0.00 0.00 0.00 5.36
2093 2117 9.238368 CCAGGTTTAGAGTTGGAAAATATAACA 57.762 33.333 0.00 0.00 26.55 2.41
2154 2178 6.959639 TTTTCTCATTTGGCATATACTCCC 57.040 37.500 0.00 0.00 0.00 4.30
2155 2179 5.912149 TTCTCATTTGGCATATACTCCCT 57.088 39.130 0.00 0.00 0.00 4.20
2156 2180 5.489792 TCTCATTTGGCATATACTCCCTC 57.510 43.478 0.00 0.00 0.00 4.30
2157 2181 4.287067 TCTCATTTGGCATATACTCCCTCC 59.713 45.833 0.00 0.00 0.00 4.30
2158 2182 3.007940 TCATTTGGCATATACTCCCTCCG 59.992 47.826 0.00 0.00 0.00 4.63
2159 2183 2.097110 TTGGCATATACTCCCTCCGT 57.903 50.000 0.00 0.00 0.00 4.69
2160 2184 2.097110 TGGCATATACTCCCTCCGTT 57.903 50.000 0.00 0.00 0.00 4.44
2161 2185 1.968493 TGGCATATACTCCCTCCGTTC 59.032 52.381 0.00 0.00 0.00 3.95
2162 2186 1.275573 GGCATATACTCCCTCCGTTCC 59.724 57.143 0.00 0.00 0.00 3.62
2163 2187 2.249139 GCATATACTCCCTCCGTTCCT 58.751 52.381 0.00 0.00 0.00 3.36
2164 2188 3.428532 GCATATACTCCCTCCGTTCCTA 58.571 50.000 0.00 0.00 0.00 2.94
2165 2189 3.830755 GCATATACTCCCTCCGTTCCTAA 59.169 47.826 0.00 0.00 0.00 2.69
2166 2190 4.282703 GCATATACTCCCTCCGTTCCTAAA 59.717 45.833 0.00 0.00 0.00 1.85
2167 2191 5.046520 GCATATACTCCCTCCGTTCCTAAAT 60.047 44.000 0.00 0.00 0.00 1.40
2168 2192 6.154021 GCATATACTCCCTCCGTTCCTAAATA 59.846 42.308 0.00 0.00 0.00 1.40
2169 2193 7.147707 GCATATACTCCCTCCGTTCCTAAATAT 60.148 40.741 0.00 0.00 0.00 1.28
2170 2194 8.759782 CATATACTCCCTCCGTTCCTAAATATT 58.240 37.037 0.00 0.00 0.00 1.28
2171 2195 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2172 2196 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2173 2197 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2174 2198 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2175 2199 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2176 2200 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2177 2201 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2178 2202 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2179 2203 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2180 2204 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2181 2205 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2182 2206 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2199 2223 8.593679 TCTTTCTAGACATTCAAATGGACTACA 58.406 33.333 7.58 0.00 40.70 2.74
2200 2224 9.219603 CTTTCTAGACATTCAAATGGACTACAA 57.780 33.333 7.58 3.08 40.70 2.41
2201 2225 8.777865 TTCTAGACATTCAAATGGACTACAAG 57.222 34.615 7.58 2.50 40.70 3.16
2202 2226 8.134202 TCTAGACATTCAAATGGACTACAAGA 57.866 34.615 7.58 4.31 40.70 3.02
2203 2227 8.762645 TCTAGACATTCAAATGGACTACAAGAT 58.237 33.333 7.58 0.00 40.70 2.40
2205 2229 8.723942 AGACATTCAAATGGACTACAAGATAC 57.276 34.615 7.58 0.00 40.70 2.24
2206 2230 7.492669 AGACATTCAAATGGACTACAAGATACG 59.507 37.037 7.58 0.00 40.70 3.06
2207 2231 6.538742 ACATTCAAATGGACTACAAGATACGG 59.461 38.462 7.58 0.00 40.70 4.02
2208 2232 5.925506 TCAAATGGACTACAAGATACGGA 57.074 39.130 0.00 0.00 0.00 4.69
2209 2233 6.479972 TCAAATGGACTACAAGATACGGAT 57.520 37.500 0.00 0.00 0.00 4.18
2210 2234 6.280643 TCAAATGGACTACAAGATACGGATG 58.719 40.000 0.00 0.00 0.00 3.51
2211 2235 5.871396 AATGGACTACAAGATACGGATGT 57.129 39.130 0.00 0.00 0.00 3.06
2212 2236 6.971726 AATGGACTACAAGATACGGATGTA 57.028 37.500 0.00 0.00 34.45 2.29
2213 2237 7.540474 AATGGACTACAAGATACGGATGTAT 57.460 36.000 0.00 0.00 43.97 2.29
2214 2238 6.327279 TGGACTACAAGATACGGATGTATG 57.673 41.667 0.00 0.00 41.37 2.39
2215 2239 5.831525 TGGACTACAAGATACGGATGTATGT 59.168 40.000 0.00 0.00 41.37 2.29
2216 2240 6.999871 TGGACTACAAGATACGGATGTATGTA 59.000 38.462 0.00 0.00 41.37 2.29
2217 2241 7.174426 TGGACTACAAGATACGGATGTATGTAG 59.826 40.741 17.68 17.68 42.27 2.74
2218 2242 7.389884 GGACTACAAGATACGGATGTATGTAGA 59.610 40.741 22.37 0.97 40.69 2.59
2219 2243 8.097078 ACTACAAGATACGGATGTATGTAGAC 57.903 38.462 22.37 0.00 40.69 2.59
2220 2244 6.954487 ACAAGATACGGATGTATGTAGACA 57.046 37.500 0.00 0.00 41.37 3.41
2221 2245 7.526142 ACAAGATACGGATGTATGTAGACAT 57.474 36.000 0.08 0.08 41.37 3.06
2222 2246 8.631480 ACAAGATACGGATGTATGTAGACATA 57.369 34.615 0.00 0.00 41.37 2.29
2223 2247 9.244292 ACAAGATACGGATGTATGTAGACATAT 57.756 33.333 5.69 0.00 41.37 1.78
2262 2286 9.871238 ATTCACTCATTTTACTTCGTATGTAGT 57.129 29.630 0.00 0.00 0.00 2.73
2263 2287 8.906636 TCACTCATTTTACTTCGTATGTAGTC 57.093 34.615 0.00 0.00 0.00 2.59
2264 2288 8.517056 TCACTCATTTTACTTCGTATGTAGTCA 58.483 33.333 0.00 0.00 0.00 3.41
2265 2289 8.584600 CACTCATTTTACTTCGTATGTAGTCAC 58.415 37.037 0.00 0.00 0.00 3.67
2266 2290 8.521176 ACTCATTTTACTTCGTATGTAGTCACT 58.479 33.333 0.00 0.00 0.00 3.41
2267 2291 9.355215 CTCATTTTACTTCGTATGTAGTCACTT 57.645 33.333 0.00 0.00 0.00 3.16
2268 2292 9.135843 TCATTTTACTTCGTATGTAGTCACTTG 57.864 33.333 0.00 0.00 0.00 3.16
2269 2293 8.922676 CATTTTACTTCGTATGTAGTCACTTGT 58.077 33.333 0.00 0.00 0.00 3.16
2270 2294 8.876275 TTTTACTTCGTATGTAGTCACTTGTT 57.124 30.769 0.00 0.00 0.00 2.83
2271 2295 7.862741 TTACTTCGTATGTAGTCACTTGTTG 57.137 36.000 0.00 0.00 0.00 3.33
2272 2296 6.080648 ACTTCGTATGTAGTCACTTGTTGA 57.919 37.500 0.00 0.00 0.00 3.18
2273 2297 6.509656 ACTTCGTATGTAGTCACTTGTTGAA 58.490 36.000 0.00 0.00 35.39 2.69
2274 2298 6.982141 ACTTCGTATGTAGTCACTTGTTGAAA 59.018 34.615 0.00 0.00 35.39 2.69
2275 2299 7.656137 ACTTCGTATGTAGTCACTTGTTGAAAT 59.344 33.333 0.00 0.00 35.39 2.17
2276 2300 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
2277 2301 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
2278 2302 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
2279 2303 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
2280 2304 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2281 2305 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2282 2306 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2283 2307 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2284 2308 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2285 2309 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2286 2310 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2287 2311 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2288 2312 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2289 2313 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2290 2314 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2303 2327 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2304 2328 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2305 2329 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2306 2330 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2307 2331 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2308 2332 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2309 2333 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2823 2859 3.874383 TTTTTCCCATGAGACAGGTGA 57.126 42.857 0.00 0.00 0.00 4.02
2824 2860 3.874383 TTTTCCCATGAGACAGGTGAA 57.126 42.857 0.00 0.00 0.00 3.18
2825 2861 3.874383 TTTCCCATGAGACAGGTGAAA 57.126 42.857 0.00 0.00 0.00 2.69
2826 2862 4.387026 TTTCCCATGAGACAGGTGAAAT 57.613 40.909 0.00 0.00 0.00 2.17
2827 2863 3.634397 TCCCATGAGACAGGTGAAATC 57.366 47.619 0.00 0.00 0.00 2.17
2828 2864 2.912295 TCCCATGAGACAGGTGAAATCA 59.088 45.455 0.00 0.00 0.00 2.57
2829 2865 3.054875 TCCCATGAGACAGGTGAAATCAG 60.055 47.826 0.00 0.00 0.00 2.90
2830 2866 3.307975 CCCATGAGACAGGTGAAATCAGT 60.308 47.826 0.00 0.00 0.00 3.41
2831 2867 4.330250 CCATGAGACAGGTGAAATCAGTT 58.670 43.478 0.00 0.00 0.00 3.16
2832 2868 4.394300 CCATGAGACAGGTGAAATCAGTTC 59.606 45.833 0.00 0.00 36.70 3.01
2833 2869 4.963318 TGAGACAGGTGAAATCAGTTCT 57.037 40.909 0.00 0.00 37.13 3.01
2834 2870 5.296151 TGAGACAGGTGAAATCAGTTCTT 57.704 39.130 0.00 0.00 37.13 2.52
2835 2871 5.059161 TGAGACAGGTGAAATCAGTTCTTG 58.941 41.667 0.00 0.00 37.13 3.02
2836 2872 5.041191 AGACAGGTGAAATCAGTTCTTGT 57.959 39.130 0.00 0.00 37.13 3.16
2837 2873 4.818546 AGACAGGTGAAATCAGTTCTTGTG 59.181 41.667 0.00 0.00 37.13 3.33
2838 2874 3.316308 ACAGGTGAAATCAGTTCTTGTGC 59.684 43.478 0.00 0.00 37.13 4.57
2839 2875 3.316029 CAGGTGAAATCAGTTCTTGTGCA 59.684 43.478 0.00 0.00 37.13 4.57
2840 2876 3.953612 AGGTGAAATCAGTTCTTGTGCAA 59.046 39.130 0.00 0.00 37.13 4.08
2841 2877 4.402155 AGGTGAAATCAGTTCTTGTGCAAA 59.598 37.500 0.00 0.00 37.13 3.68
2842 2878 4.741676 GGTGAAATCAGTTCTTGTGCAAAG 59.258 41.667 0.00 0.00 37.13 2.77
2843 2879 5.343249 GTGAAATCAGTTCTTGTGCAAAGT 58.657 37.500 0.00 0.00 37.13 2.66
2844 2880 5.456822 GTGAAATCAGTTCTTGTGCAAAGTC 59.543 40.000 0.00 0.00 37.13 3.01
2845 2881 5.357878 TGAAATCAGTTCTTGTGCAAAGTCT 59.642 36.000 0.00 0.00 37.13 3.24
2846 2882 5.841957 AATCAGTTCTTGTGCAAAGTCTT 57.158 34.783 0.00 0.00 0.00 3.01
2847 2883 5.841957 ATCAGTTCTTGTGCAAAGTCTTT 57.158 34.783 0.00 0.00 0.00 2.52
2848 2884 4.985413 TCAGTTCTTGTGCAAAGTCTTTG 58.015 39.130 19.20 19.20 43.44 2.77
2849 2885 4.699735 TCAGTTCTTGTGCAAAGTCTTTGA 59.300 37.500 26.14 10.57 43.26 2.69
2850 2886 5.357878 TCAGTTCTTGTGCAAAGTCTTTGAT 59.642 36.000 26.14 0.00 43.26 2.57
2851 2887 5.684626 CAGTTCTTGTGCAAAGTCTTTGATC 59.315 40.000 26.14 17.59 43.26 2.92
2852 2888 5.357878 AGTTCTTGTGCAAAGTCTTTGATCA 59.642 36.000 26.14 19.55 43.26 2.92
2853 2889 6.040166 AGTTCTTGTGCAAAGTCTTTGATCAT 59.960 34.615 26.14 7.98 43.26 2.45
2854 2890 5.765176 TCTTGTGCAAAGTCTTTGATCATG 58.235 37.500 26.14 21.49 43.26 3.07
2855 2891 5.300034 TCTTGTGCAAAGTCTTTGATCATGT 59.700 36.000 26.14 0.00 43.26 3.21
2856 2892 4.862350 TGTGCAAAGTCTTTGATCATGTG 58.138 39.130 26.14 1.19 43.26 3.21
2857 2893 4.338964 TGTGCAAAGTCTTTGATCATGTGT 59.661 37.500 26.14 0.00 43.26 3.72
2891 2927 0.763986 ACCAGTGCCCTTGCCATTTT 60.764 50.000 0.00 0.00 36.33 1.82
2995 3037 9.880157 TTTAGTAGTACAAGAATATGGTGTTCC 57.120 33.333 2.52 0.00 0.00 3.62
2996 3038 6.570692 AGTAGTACAAGAATATGGTGTTCCG 58.429 40.000 2.52 0.00 36.30 4.30
2997 3039 4.189231 AGTACAAGAATATGGTGTTCCGC 58.811 43.478 0.00 0.00 36.30 5.54
2998 3040 2.365582 ACAAGAATATGGTGTTCCGCC 58.634 47.619 0.00 0.00 36.30 6.13
2999 3041 1.330521 CAAGAATATGGTGTTCCGCCG 59.669 52.381 0.00 0.00 36.72 6.46
3000 3042 0.539986 AGAATATGGTGTTCCGCCGT 59.460 50.000 0.00 0.00 36.72 5.68
3001 3043 0.655733 GAATATGGTGTTCCGCCGTG 59.344 55.000 0.00 0.00 36.72 4.94
3002 3044 0.250793 AATATGGTGTTCCGCCGTGA 59.749 50.000 0.00 0.00 36.72 4.35
3003 3045 0.468226 ATATGGTGTTCCGCCGTGAT 59.532 50.000 0.00 0.00 36.72 3.06
3004 3046 1.112950 TATGGTGTTCCGCCGTGATA 58.887 50.000 0.00 0.00 36.72 2.15
3005 3047 0.461339 ATGGTGTTCCGCCGTGATAC 60.461 55.000 0.00 0.00 36.72 2.24
3006 3048 1.217244 GGTGTTCCGCCGTGATACT 59.783 57.895 0.00 0.00 0.00 2.12
3007 3049 1.082117 GGTGTTCCGCCGTGATACTG 61.082 60.000 0.00 0.00 0.00 2.74
3008 3050 0.108992 GTGTTCCGCCGTGATACTGA 60.109 55.000 0.00 0.00 0.00 3.41
3009 3051 0.604073 TGTTCCGCCGTGATACTGAA 59.396 50.000 0.00 0.00 0.00 3.02
3010 3052 1.206132 TGTTCCGCCGTGATACTGAAT 59.794 47.619 0.00 0.00 0.00 2.57
3011 3053 2.277084 GTTCCGCCGTGATACTGAATT 58.723 47.619 0.00 0.00 0.00 2.17
3012 3054 2.218953 TCCGCCGTGATACTGAATTC 57.781 50.000 0.00 0.00 0.00 2.17
3013 3055 1.478916 TCCGCCGTGATACTGAATTCA 59.521 47.619 8.12 8.12 0.00 2.57
3014 3056 2.102420 TCCGCCGTGATACTGAATTCAT 59.898 45.455 8.96 2.32 0.00 2.57
3021 3063 6.033831 GCCGTGATACTGAATTCATTTGTTTG 59.966 38.462 8.96 0.00 0.00 2.93
3040 3082 1.885887 TGCACCAAGTTAACCATCTGC 59.114 47.619 0.88 5.58 0.00 4.26
3096 3138 4.413520 AGTGGCCATGTCTACTCCATAAAT 59.586 41.667 9.72 0.00 0.00 1.40
3100 3142 4.449068 GCCATGTCTACTCCATAAATGACG 59.551 45.833 0.00 0.00 0.00 4.35
3188 3230 5.129634 CACTATAGGAGTCTCAGAGAGCAA 58.870 45.833 0.00 0.00 35.64 3.91
3384 3426 0.572590 CGTCAAACATCGCGATCCTC 59.427 55.000 20.85 5.96 0.00 3.71
3411 3453 2.594962 CGTCGACAAGGCAAACGCT 61.595 57.895 17.16 0.00 0.00 5.07
3575 3617 1.525923 CCTACCAGCAGCAGCATCT 59.474 57.895 3.17 0.00 45.49 2.90
3600 3748 6.149640 TGTGAGTACTAGCTTAGTGAGAACAG 59.850 42.308 0.00 0.00 39.81 3.16
3603 3751 6.478129 AGTACTAGCTTAGTGAGAACAGAGT 58.522 40.000 0.00 0.00 39.81 3.24
3628 3776 6.183360 TGGAGATTCCTTTGCTGTGAAAAATT 60.183 34.615 0.00 0.00 37.46 1.82
3643 3791 7.577979 TGTGAAAAATTAAGGCGTGTAAGTAG 58.422 34.615 0.00 0.00 0.00 2.57
3731 3879 0.515564 GTCCGACGGATGGTTTGTTG 59.484 55.000 21.53 0.00 32.73 3.33
3758 3907 2.861006 GGAAGCGCCGTCAGTTTC 59.139 61.111 2.29 0.00 0.00 2.78
3866 4020 4.221703 TGTGGCCAGTTTTTATGGTATTGG 59.778 41.667 5.11 0.00 40.17 3.16
3893 4047 9.638239 GAACTCCATTCTATCTAGCTAAGATTG 57.362 37.037 9.89 8.94 44.72 2.67
3899 4053 9.299963 CATTCTATCTAGCTAAGATTGGATTCG 57.700 37.037 9.89 0.00 42.62 3.34
3909 4063 0.171007 ATTGGATTCGTTTGCAGGCG 59.829 50.000 5.76 5.76 0.00 5.52
3944 4187 2.028112 GTGTGGCTGATCCTGTCTGTTA 60.028 50.000 0.00 0.00 35.26 2.41
4010 4254 1.434188 ACCTGATGTGGGTTCAGTGA 58.566 50.000 0.00 0.00 39.16 3.41
4022 4266 2.095718 GGTTCAGTGATTTTCTGCCGTC 60.096 50.000 0.00 0.00 33.48 4.79
4096 4340 0.757512 TGCTGAATTGCTGCCCAAAA 59.242 45.000 0.00 0.00 40.39 2.44
4097 4341 1.270412 TGCTGAATTGCTGCCCAAAAG 60.270 47.619 0.00 0.00 40.39 2.27
4098 4342 1.942586 GCTGAATTGCTGCCCAAAAGG 60.943 52.381 0.00 0.00 36.92 3.11
4099 4343 1.619827 CTGAATTGCTGCCCAAAAGGA 59.380 47.619 0.00 0.00 38.24 3.36
4100 4344 2.037511 CTGAATTGCTGCCCAAAAGGAA 59.962 45.455 0.00 0.00 38.24 3.36
4270 4522 4.599041 TGGTTGCCTGCATACTCTTAAAT 58.401 39.130 0.00 0.00 0.00 1.40
4272 4524 6.364701 TGGTTGCCTGCATACTCTTAAATAT 58.635 36.000 0.00 0.00 0.00 1.28
4278 4530 8.965819 TGCCTGCATACTCTTAAATATTTTGAA 58.034 29.630 5.91 0.00 0.00 2.69
4323 4575 0.104120 TGTCCATCGCATACTTCCCG 59.896 55.000 0.00 0.00 0.00 5.14
4328 4580 3.070446 TCCATCGCATACTTCCCGTAAAT 59.930 43.478 0.00 0.00 0.00 1.40
4334 4586 5.873712 TCGCATACTTCCCGTAAATTGTAAA 59.126 36.000 0.00 0.00 0.00 2.01
4335 4587 5.961263 CGCATACTTCCCGTAAATTGTAAAC 59.039 40.000 0.00 0.00 0.00 2.01
4336 4588 6.260377 GCATACTTCCCGTAAATTGTAAACC 58.740 40.000 0.00 0.00 0.00 3.27
4337 4589 6.678655 GCATACTTCCCGTAAATTGTAAACCC 60.679 42.308 0.00 0.00 0.00 4.11
4338 4590 4.989277 ACTTCCCGTAAATTGTAAACCCT 58.011 39.130 0.00 0.00 0.00 4.34
4339 4591 5.005740 ACTTCCCGTAAATTGTAAACCCTC 58.994 41.667 0.00 0.00 0.00 4.30
4340 4592 3.954200 TCCCGTAAATTGTAAACCCTCC 58.046 45.455 0.00 0.00 0.00 4.30
4341 4593 2.679336 CCCGTAAATTGTAAACCCTCCG 59.321 50.000 0.00 0.00 0.00 4.63
4342 4594 3.598299 CCGTAAATTGTAAACCCTCCGA 58.402 45.455 0.00 0.00 0.00 4.55
4343 4595 4.002316 CCGTAAATTGTAAACCCTCCGAA 58.998 43.478 0.00 0.00 0.00 4.30
4344 4596 4.142838 CCGTAAATTGTAAACCCTCCGAAC 60.143 45.833 0.00 0.00 0.00 3.95
4345 4597 4.692155 CGTAAATTGTAAACCCTCCGAACT 59.308 41.667 0.00 0.00 0.00 3.01
4346 4598 5.163923 CGTAAATTGTAAACCCTCCGAACTC 60.164 44.000 0.00 0.00 0.00 3.01
4353 4605 1.609501 CCCTCCGAACTCACCCTCA 60.610 63.158 0.00 0.00 0.00 3.86
4387 4639 3.219281 GGAACACCACATACCACTTGTT 58.781 45.455 0.00 0.00 0.00 2.83
4399 4651 7.066887 CACATACCACTTGTTCTAATATGGCAA 59.933 37.037 0.00 0.00 0.00 4.52
4420 4672 5.277634 GCAAAAGAGCAAACAATTCAAGCAT 60.278 36.000 0.00 0.00 0.00 3.79
4500 4752 6.173339 CACAACAAGTTCATCCTACCACTAT 58.827 40.000 0.00 0.00 0.00 2.12
4566 4818 1.792949 CTACCGCTAATTGGTCATCGC 59.207 52.381 0.00 0.00 40.96 4.58
4568 4820 0.813610 CCGCTAATTGGTCATCGCCA 60.814 55.000 0.00 0.00 36.62 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.752961 CATGAGATGATAGATCTACCATTGATC 57.247 37.037 11.08 10.09 40.26 2.92
2 3 9.269494 ACATGAGATGATAGATCTACCATTGAT 57.731 33.333 11.08 1.05 0.00 2.57
3 4 8.661752 ACATGAGATGATAGATCTACCATTGA 57.338 34.615 11.08 0.00 0.00 2.57
47 48 9.783081 TGTATAATATGATGTGACAGCAAATCT 57.217 29.630 7.89 0.00 39.16 2.40
365 366 4.765339 GGTAGAATATTACAACATGGGGCC 59.235 45.833 0.00 0.00 0.00 5.80
388 389 6.307800 CCTCAAATGTGTAAAATAAACCTGCG 59.692 38.462 0.00 0.00 0.00 5.18
403 404 9.188588 GAAATATCATGCATAACCTCAAATGTG 57.811 33.333 0.00 0.00 0.00 3.21
475 476 8.767085 CCATCAACCAATATTAAAACATGCATC 58.233 33.333 0.00 0.00 0.00 3.91
652 653 2.297033 TCAGCCAGAAAGATGCCAAAAC 59.703 45.455 0.00 0.00 0.00 2.43
661 662 5.658634 TCTCTAATAGCTTCAGCCAGAAAGA 59.341 40.000 0.00 0.00 43.38 2.52
975 980 4.457834 TTGCTTCAGCCTAGAACTCTAC 57.542 45.455 0.00 0.00 41.18 2.59
1038 1044 9.971922 CTCTCAAAAATCCTTATTTCACTGTTT 57.028 29.630 0.00 0.00 34.12 2.83
1226 1233 8.981647 GTATTGAAAATTCTTGCACAGAAACAT 58.018 29.630 13.04 5.02 45.06 2.71
1235 1242 6.760298 TGCAAACTGTATTGAAAATTCTTGCA 59.240 30.769 9.63 9.63 42.07 4.08
1315 1322 1.271871 CCAGGGTCTTGTTGTATGGCA 60.272 52.381 0.00 0.00 0.00 4.92
1355 1362 1.847818 CACGTTCGTCAGACCAGAAA 58.152 50.000 0.00 0.00 0.00 2.52
1423 1432 9.533831 AAAGTCCACATACCTTTGATAGAAATT 57.466 29.630 0.00 0.00 0.00 1.82
1495 1504 7.713764 AAAATGAAACTCAGGCAACAAATAC 57.286 32.000 0.00 0.00 41.41 1.89
1539 1548 9.107177 GATGGATCTCATGCAAGGTATAAATAG 57.893 37.037 0.00 0.00 35.97 1.73
1559 1568 7.994911 TGAAGAAAAGTACTATGCATGATGGAT 59.005 33.333 10.16 4.51 31.80 3.41
1621 1630 2.383338 AGGAAAACCCTGAATGACCCAT 59.617 45.455 0.00 0.00 45.61 4.00
1679 1688 7.095060 CCTCATAGCTGATACGCAAATTGTAAT 60.095 37.037 0.00 0.00 0.00 1.89
1690 1699 5.201713 TCTTTTCCCTCATAGCTGATACG 57.798 43.478 0.00 0.00 0.00 3.06
1773 1782 9.787435 GTGGACACCAATAATAATACTCCATTA 57.213 33.333 0.00 0.00 34.18 1.90
1784 1793 8.598202 TCTACTAACAGTGGACACCAATAATA 57.402 34.615 0.00 0.00 34.18 0.98
1795 1804 5.304614 GGCAGGATAATCTACTAACAGTGGA 59.695 44.000 0.00 0.00 40.04 4.02
1804 1813 5.012561 GGATTGACAGGCAGGATAATCTACT 59.987 44.000 0.00 0.00 0.00 2.57
1805 1814 5.221722 TGGATTGACAGGCAGGATAATCTAC 60.222 44.000 0.00 0.00 0.00 2.59
1913 1935 8.926715 AAATTAACTCTCAAAAGTCCAACAAC 57.073 30.769 0.00 0.00 0.00 3.32
1962 1984 5.104900 TCCTTACTACTGAATTCTTCTGGCC 60.105 44.000 7.05 0.00 33.45 5.36
1963 1985 5.813157 GTCCTTACTACTGAATTCTTCTGGC 59.187 44.000 7.05 0.00 33.45 4.85
1965 1987 6.936279 TGGTCCTTACTACTGAATTCTTCTG 58.064 40.000 7.05 0.00 35.09 3.02
2057 2081 6.238759 CCAACTCTAAACCTGGTCTTTCTTTG 60.239 42.308 0.00 0.74 0.00 2.77
2093 2117 0.403271 ACAACTCTGAGCCAAGGCAT 59.597 50.000 14.40 0.00 44.88 4.40
2094 2118 1.055849 TACAACTCTGAGCCAAGGCA 58.944 50.000 14.40 0.00 44.88 4.75
2148 2172 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
2149 2173 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2150 2174 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2151 2175 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2152 2176 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2153 2177 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2154 2178 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2155 2179 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2156 2180 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2173 2197 8.593679 TGTAGTCCATTTGAATGTCTAGAAAGA 58.406 33.333 0.00 0.00 34.60 2.52
2174 2198 8.777865 TGTAGTCCATTTGAATGTCTAGAAAG 57.222 34.615 0.00 0.00 34.60 2.62
2175 2199 9.219603 CTTGTAGTCCATTTGAATGTCTAGAAA 57.780 33.333 0.00 0.00 34.60 2.52
2176 2200 8.593679 TCTTGTAGTCCATTTGAATGTCTAGAA 58.406 33.333 0.00 8.39 34.60 2.10
2177 2201 8.134202 TCTTGTAGTCCATTTGAATGTCTAGA 57.866 34.615 3.30 0.00 34.60 2.43
2178 2202 8.954950 ATCTTGTAGTCCATTTGAATGTCTAG 57.045 34.615 3.30 0.00 34.60 2.43
2179 2203 9.817809 GTATCTTGTAGTCCATTTGAATGTCTA 57.182 33.333 3.30 3.40 34.60 2.59
2180 2204 7.492669 CGTATCTTGTAGTCCATTTGAATGTCT 59.507 37.037 3.30 4.19 34.60 3.41
2181 2205 7.254455 CCGTATCTTGTAGTCCATTTGAATGTC 60.254 40.741 3.30 0.00 34.60 3.06
2182 2206 6.538742 CCGTATCTTGTAGTCCATTTGAATGT 59.461 38.462 3.30 0.00 34.60 2.71
2183 2207 6.761242 TCCGTATCTTGTAGTCCATTTGAATG 59.239 38.462 0.00 0.00 36.17 2.67
2184 2208 6.884832 TCCGTATCTTGTAGTCCATTTGAAT 58.115 36.000 0.00 0.00 0.00 2.57
2185 2209 6.288941 TCCGTATCTTGTAGTCCATTTGAA 57.711 37.500 0.00 0.00 0.00 2.69
2186 2210 5.925506 TCCGTATCTTGTAGTCCATTTGA 57.074 39.130 0.00 0.00 0.00 2.69
2187 2211 6.049149 ACATCCGTATCTTGTAGTCCATTTG 58.951 40.000 0.00 0.00 0.00 2.32
2188 2212 6.235231 ACATCCGTATCTTGTAGTCCATTT 57.765 37.500 0.00 0.00 0.00 2.32
2189 2213 5.871396 ACATCCGTATCTTGTAGTCCATT 57.129 39.130 0.00 0.00 0.00 3.16
2190 2214 6.493802 ACATACATCCGTATCTTGTAGTCCAT 59.506 38.462 0.00 0.00 36.11 3.41
2191 2215 5.831525 ACATACATCCGTATCTTGTAGTCCA 59.168 40.000 0.00 0.00 36.11 4.02
2192 2216 6.328641 ACATACATCCGTATCTTGTAGTCC 57.671 41.667 0.00 0.00 36.11 3.85
2193 2217 8.229137 GTCTACATACATCCGTATCTTGTAGTC 58.771 40.741 0.00 0.00 38.60 2.59
2194 2218 7.718314 TGTCTACATACATCCGTATCTTGTAGT 59.282 37.037 0.00 0.00 38.60 2.73
2195 2219 8.095937 TGTCTACATACATCCGTATCTTGTAG 57.904 38.462 0.00 0.00 38.71 2.74
2196 2220 8.631480 ATGTCTACATACATCCGTATCTTGTA 57.369 34.615 0.00 0.00 35.08 2.41
2197 2221 6.954487 TGTCTACATACATCCGTATCTTGT 57.046 37.500 0.00 0.00 36.11 3.16
2247 2271 8.136800 TTCAACAAGTGACTACATACGAAGTAA 58.863 33.333 0.00 0.00 41.03 2.24
2248 2272 7.650890 TTCAACAAGTGACTACATACGAAGTA 58.349 34.615 0.00 0.00 41.66 2.24
2249 2273 6.509656 TTCAACAAGTGACTACATACGAAGT 58.490 36.000 0.00 0.00 39.84 3.01
2250 2274 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
2251 2275 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
2252 2276 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
2253 2277 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
2254 2278 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2256 2280 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2257 2281 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2258 2282 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2259 2283 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2260 2284 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2261 2285 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2262 2286 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2263 2287 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2264 2288 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2277 2301 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2278 2302 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2279 2303 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2280 2304 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2281 2305 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2282 2306 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2283 2307 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2284 2308 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2285 2309 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2286 2310 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2287 2311 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2288 2312 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2289 2313 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
2290 2314 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
2291 2315 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2292 2316 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2293 2317 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2294 2318 3.266772 TGTACTACTCCCTCCGTTCCTAA 59.733 47.826 0.00 0.00 0.00 2.69
2295 2319 2.846206 TGTACTACTCCCTCCGTTCCTA 59.154 50.000 0.00 0.00 0.00 2.94
2296 2320 1.637553 TGTACTACTCCCTCCGTTCCT 59.362 52.381 0.00 0.00 0.00 3.36
2297 2321 2.134789 TGTACTACTCCCTCCGTTCC 57.865 55.000 0.00 0.00 0.00 3.62
2298 2322 4.732672 AAATGTACTACTCCCTCCGTTC 57.267 45.455 0.00 0.00 0.00 3.95
2299 2323 5.718607 AGTAAAATGTACTACTCCCTCCGTT 59.281 40.000 0.00 0.00 0.00 4.44
2300 2324 5.267587 AGTAAAATGTACTACTCCCTCCGT 58.732 41.667 0.00 0.00 0.00 4.69
2301 2325 5.848833 AGTAAAATGTACTACTCCCTCCG 57.151 43.478 0.00 0.00 0.00 4.63
2302 2326 5.816258 GCAAGTAAAATGTACTACTCCCTCC 59.184 44.000 0.00 0.00 0.00 4.30
2303 2327 5.816258 GGCAAGTAAAATGTACTACTCCCTC 59.184 44.000 0.00 0.00 0.00 4.30
2304 2328 5.338953 GGGCAAGTAAAATGTACTACTCCCT 60.339 44.000 8.47 0.00 32.51 4.20
2305 2329 4.880120 GGGCAAGTAAAATGTACTACTCCC 59.120 45.833 0.00 0.00 0.00 4.30
2306 2330 4.569564 CGGGCAAGTAAAATGTACTACTCC 59.430 45.833 0.00 0.00 0.00 3.85
2307 2331 5.413499 TCGGGCAAGTAAAATGTACTACTC 58.587 41.667 0.00 0.00 0.00 2.59
2308 2332 5.410355 TCGGGCAAGTAAAATGTACTACT 57.590 39.130 0.00 0.00 0.00 2.57
2309 2333 6.673154 ATTCGGGCAAGTAAAATGTACTAC 57.327 37.500 0.00 0.00 0.00 2.73
2430 2455 8.613060 ACCACTTGTATCTAATATGCAGAATG 57.387 34.615 0.00 0.00 40.87 2.67
2449 2474 3.214328 CAAGCTACCAGAACAACCACTT 58.786 45.455 0.00 0.00 0.00 3.16
2450 2475 2.172717 ACAAGCTACCAGAACAACCACT 59.827 45.455 0.00 0.00 0.00 4.00
2803 2839 3.874383 TCACCTGTCTCATGGGAAAAA 57.126 42.857 0.00 0.00 0.00 1.94
2804 2840 3.874383 TTCACCTGTCTCATGGGAAAA 57.126 42.857 0.00 0.00 0.00 2.29
2805 2841 3.874383 TTTCACCTGTCTCATGGGAAA 57.126 42.857 0.00 0.00 0.00 3.13
2806 2842 3.330405 TGATTTCACCTGTCTCATGGGAA 59.670 43.478 0.00 0.00 0.00 3.97
2807 2843 2.912295 TGATTTCACCTGTCTCATGGGA 59.088 45.455 0.00 0.00 0.00 4.37
2808 2844 3.276857 CTGATTTCACCTGTCTCATGGG 58.723 50.000 0.00 0.00 0.00 4.00
2809 2845 3.947868 ACTGATTTCACCTGTCTCATGG 58.052 45.455 0.00 0.00 0.00 3.66
2810 2846 5.243981 AGAACTGATTTCACCTGTCTCATG 58.756 41.667 0.00 0.00 36.57 3.07
2811 2847 5.495926 AGAACTGATTTCACCTGTCTCAT 57.504 39.130 0.00 0.00 36.57 2.90
2812 2848 4.963318 AGAACTGATTTCACCTGTCTCA 57.037 40.909 0.00 0.00 36.57 3.27
2813 2849 5.049818 CACAAGAACTGATTTCACCTGTCTC 60.050 44.000 0.00 0.00 36.57 3.36
2814 2850 4.818546 CACAAGAACTGATTTCACCTGTCT 59.181 41.667 0.00 0.00 36.57 3.41
2815 2851 4.555511 GCACAAGAACTGATTTCACCTGTC 60.556 45.833 0.00 0.00 36.57 3.51
2816 2852 3.316308 GCACAAGAACTGATTTCACCTGT 59.684 43.478 0.00 0.00 36.57 4.00
2817 2853 3.316029 TGCACAAGAACTGATTTCACCTG 59.684 43.478 0.00 0.00 36.57 4.00
2818 2854 3.554934 TGCACAAGAACTGATTTCACCT 58.445 40.909 0.00 0.00 36.57 4.00
2819 2855 3.988379 TGCACAAGAACTGATTTCACC 57.012 42.857 0.00 0.00 36.57 4.02
2820 2856 5.343249 ACTTTGCACAAGAACTGATTTCAC 58.657 37.500 13.35 0.00 36.57 3.18
2821 2857 5.357878 AGACTTTGCACAAGAACTGATTTCA 59.642 36.000 13.35 0.00 36.57 2.69
2822 2858 5.825507 AGACTTTGCACAAGAACTGATTTC 58.174 37.500 13.35 1.64 33.95 2.17
2823 2859 5.841957 AGACTTTGCACAAGAACTGATTT 57.158 34.783 13.35 0.00 0.00 2.17
2824 2860 5.841957 AAGACTTTGCACAAGAACTGATT 57.158 34.783 13.35 0.00 0.00 2.57
2825 2861 5.357878 TCAAAGACTTTGCACAAGAACTGAT 59.642 36.000 20.95 5.33 40.43 2.90
2826 2862 4.699735 TCAAAGACTTTGCACAAGAACTGA 59.300 37.500 20.95 0.00 40.43 3.41
2827 2863 4.985413 TCAAAGACTTTGCACAAGAACTG 58.015 39.130 20.95 0.00 40.43 3.16
2828 2864 5.357878 TGATCAAAGACTTTGCACAAGAACT 59.642 36.000 20.95 9.73 40.43 3.01
2829 2865 5.581605 TGATCAAAGACTTTGCACAAGAAC 58.418 37.500 20.95 4.62 40.43 3.01
2830 2866 5.833406 TGATCAAAGACTTTGCACAAGAA 57.167 34.783 20.95 4.61 40.43 2.52
2831 2867 5.300034 ACATGATCAAAGACTTTGCACAAGA 59.700 36.000 20.95 5.28 40.43 3.02
2832 2868 5.401376 CACATGATCAAAGACTTTGCACAAG 59.599 40.000 20.95 19.36 40.43 3.16
2833 2869 5.163530 ACACATGATCAAAGACTTTGCACAA 60.164 36.000 20.95 6.32 40.43 3.33
2834 2870 4.338964 ACACATGATCAAAGACTTTGCACA 59.661 37.500 20.95 20.64 40.43 4.57
2835 2871 4.863491 ACACATGATCAAAGACTTTGCAC 58.137 39.130 20.95 16.62 40.43 4.57
2836 2872 6.822667 ATACACATGATCAAAGACTTTGCA 57.177 33.333 20.95 14.93 40.43 4.08
2837 2873 8.524870 AAAATACACATGATCAAAGACTTTGC 57.475 30.769 20.95 10.16 40.43 3.68
2838 2874 9.132521 GGAAAATACACATGATCAAAGACTTTG 57.867 33.333 19.93 19.93 41.96 2.77
2839 2875 8.306761 GGGAAAATACACATGATCAAAGACTTT 58.693 33.333 0.00 0.00 0.00 2.66
2840 2876 7.093771 GGGGAAAATACACATGATCAAAGACTT 60.094 37.037 0.00 0.00 0.00 3.01
2841 2877 6.378280 GGGGAAAATACACATGATCAAAGACT 59.622 38.462 0.00 0.00 0.00 3.24
2842 2878 6.378280 AGGGGAAAATACACATGATCAAAGAC 59.622 38.462 0.00 0.00 0.00 3.01
2843 2879 6.377996 CAGGGGAAAATACACATGATCAAAGA 59.622 38.462 0.00 0.00 0.00 2.52
2844 2880 6.567050 CAGGGGAAAATACACATGATCAAAG 58.433 40.000 0.00 0.00 0.00 2.77
2845 2881 5.105392 GCAGGGGAAAATACACATGATCAAA 60.105 40.000 0.00 0.00 0.00 2.69
2846 2882 4.402155 GCAGGGGAAAATACACATGATCAA 59.598 41.667 0.00 0.00 0.00 2.57
2847 2883 3.953612 GCAGGGGAAAATACACATGATCA 59.046 43.478 0.00 0.00 0.00 2.92
2848 2884 3.953612 TGCAGGGGAAAATACACATGATC 59.046 43.478 0.00 0.00 0.00 2.92
2849 2885 3.979911 TGCAGGGGAAAATACACATGAT 58.020 40.909 0.00 0.00 0.00 2.45
2850 2886 3.448093 TGCAGGGGAAAATACACATGA 57.552 42.857 0.00 0.00 0.00 3.07
2851 2887 4.037923 GGTATGCAGGGGAAAATACACATG 59.962 45.833 0.00 0.00 0.00 3.21
2852 2888 4.215109 GGTATGCAGGGGAAAATACACAT 58.785 43.478 0.00 0.00 0.00 3.21
2853 2889 3.010696 TGGTATGCAGGGGAAAATACACA 59.989 43.478 0.00 0.00 0.00 3.72
2854 2890 3.626930 TGGTATGCAGGGGAAAATACAC 58.373 45.455 0.00 0.00 0.00 2.90
2855 2891 3.268334 ACTGGTATGCAGGGGAAAATACA 59.732 43.478 0.00 0.00 0.00 2.29
2856 2892 3.632145 CACTGGTATGCAGGGGAAAATAC 59.368 47.826 0.00 0.00 0.00 1.89
2857 2893 3.897239 CACTGGTATGCAGGGGAAAATA 58.103 45.455 0.00 0.00 0.00 1.40
2969 3011 9.880157 GGAACACCATATTCTTGTACTACTAAA 57.120 33.333 0.00 0.00 0.00 1.85
2970 3012 8.192774 CGGAACACCATATTCTTGTACTACTAA 58.807 37.037 0.00 0.00 0.00 2.24
2971 3013 7.682741 GCGGAACACCATATTCTTGTACTACTA 60.683 40.741 0.00 0.00 0.00 1.82
2972 3014 6.570692 CGGAACACCATATTCTTGTACTACT 58.429 40.000 0.00 0.00 0.00 2.57
2973 3015 5.233689 GCGGAACACCATATTCTTGTACTAC 59.766 44.000 0.00 0.00 0.00 2.73
2974 3016 5.353938 GCGGAACACCATATTCTTGTACTA 58.646 41.667 0.00 0.00 0.00 1.82
2975 3017 4.189231 GCGGAACACCATATTCTTGTACT 58.811 43.478 0.00 0.00 0.00 2.73
2976 3018 3.311596 GGCGGAACACCATATTCTTGTAC 59.688 47.826 0.00 0.00 0.00 2.90
2977 3019 3.537580 GGCGGAACACCATATTCTTGTA 58.462 45.455 0.00 0.00 0.00 2.41
2978 3020 2.365582 GGCGGAACACCATATTCTTGT 58.634 47.619 0.00 0.00 0.00 3.16
2979 3021 1.330521 CGGCGGAACACCATATTCTTG 59.669 52.381 0.00 0.00 0.00 3.02
2980 3022 1.065709 ACGGCGGAACACCATATTCTT 60.066 47.619 13.24 0.00 0.00 2.52
2981 3023 0.539986 ACGGCGGAACACCATATTCT 59.460 50.000 13.24 0.00 0.00 2.40
2982 3024 0.655733 CACGGCGGAACACCATATTC 59.344 55.000 13.24 0.00 0.00 1.75
2983 3025 0.250793 TCACGGCGGAACACCATATT 59.749 50.000 13.24 0.00 0.00 1.28
2984 3026 0.468226 ATCACGGCGGAACACCATAT 59.532 50.000 13.24 0.00 0.00 1.78
2985 3027 1.112950 TATCACGGCGGAACACCATA 58.887 50.000 13.24 0.00 0.00 2.74
2986 3028 0.461339 GTATCACGGCGGAACACCAT 60.461 55.000 13.24 0.00 0.00 3.55
2987 3029 1.079681 GTATCACGGCGGAACACCA 60.080 57.895 13.24 0.00 0.00 4.17
2988 3030 1.082117 CAGTATCACGGCGGAACACC 61.082 60.000 13.24 0.00 0.00 4.16
2989 3031 0.108992 TCAGTATCACGGCGGAACAC 60.109 55.000 13.24 8.34 0.00 3.32
2990 3032 0.604073 TTCAGTATCACGGCGGAACA 59.396 50.000 13.24 0.00 0.00 3.18
2991 3033 1.935933 ATTCAGTATCACGGCGGAAC 58.064 50.000 13.24 3.32 0.00 3.62
2992 3034 2.093921 TGAATTCAGTATCACGGCGGAA 60.094 45.455 13.24 3.12 0.00 4.30
2993 3035 1.478916 TGAATTCAGTATCACGGCGGA 59.521 47.619 13.24 6.15 0.00 5.54
2994 3036 1.934589 TGAATTCAGTATCACGGCGG 58.065 50.000 13.24 0.00 0.00 6.13
2995 3037 4.201812 ACAAATGAATTCAGTATCACGGCG 60.202 41.667 14.54 4.80 0.00 6.46
2996 3038 5.235305 ACAAATGAATTCAGTATCACGGC 57.765 39.130 14.54 0.00 0.00 5.68
2997 3039 6.033831 GCAAACAAATGAATTCAGTATCACGG 59.966 38.462 14.54 2.24 0.00 4.94
2998 3040 6.581919 TGCAAACAAATGAATTCAGTATCACG 59.418 34.615 14.54 2.68 0.00 4.35
2999 3041 7.148755 GGTGCAAACAAATGAATTCAGTATCAC 60.149 37.037 14.54 13.00 0.00 3.06
3000 3042 6.867816 GGTGCAAACAAATGAATTCAGTATCA 59.132 34.615 14.54 3.40 0.00 2.15
3001 3043 6.867816 TGGTGCAAACAAATGAATTCAGTATC 59.132 34.615 14.54 0.00 0.00 2.24
3002 3044 6.757237 TGGTGCAAACAAATGAATTCAGTAT 58.243 32.000 14.54 0.51 0.00 2.12
3003 3045 6.154203 TGGTGCAAACAAATGAATTCAGTA 57.846 33.333 14.54 0.00 0.00 2.74
3004 3046 5.021033 TGGTGCAAACAAATGAATTCAGT 57.979 34.783 14.54 8.63 0.00 3.41
3005 3047 5.524646 ACTTGGTGCAAACAAATGAATTCAG 59.475 36.000 14.54 2.96 0.00 3.02
3006 3048 5.426504 ACTTGGTGCAAACAAATGAATTCA 58.573 33.333 11.26 11.26 0.00 2.57
3007 3049 5.989551 ACTTGGTGCAAACAAATGAATTC 57.010 34.783 0.00 0.00 0.00 2.17
3008 3050 7.201688 GGTTAACTTGGTGCAAACAAATGAATT 60.202 33.333 5.42 0.00 0.00 2.17
3009 3051 6.259829 GGTTAACTTGGTGCAAACAAATGAAT 59.740 34.615 5.42 0.00 0.00 2.57
3010 3052 5.582665 GGTTAACTTGGTGCAAACAAATGAA 59.417 36.000 5.42 0.00 0.00 2.57
3011 3053 5.112686 GGTTAACTTGGTGCAAACAAATGA 58.887 37.500 5.42 0.00 0.00 2.57
3012 3054 4.872691 TGGTTAACTTGGTGCAAACAAATG 59.127 37.500 5.42 0.00 0.00 2.32
3013 3055 5.091261 TGGTTAACTTGGTGCAAACAAAT 57.909 34.783 5.42 0.00 0.00 2.32
3014 3056 4.537135 TGGTTAACTTGGTGCAAACAAA 57.463 36.364 5.42 0.00 0.00 2.83
3021 3063 2.095059 CAGCAGATGGTTAACTTGGTGC 60.095 50.000 5.42 9.93 0.00 5.01
3070 3112 1.137872 GGAGTAGACATGGCCACTCAG 59.862 57.143 25.67 0.19 39.33 3.35
3123 3165 4.562082 TGATGACAAATTCGTAGTCCGTT 58.438 39.130 0.00 0.00 37.94 4.44
3188 3230 0.110486 ATCAAACTTGGGGCAGTCGT 59.890 50.000 0.00 0.00 0.00 4.34
3411 3453 1.071299 AGACACGGCTGAATGCACA 59.929 52.632 0.00 0.00 45.15 4.57
3462 3504 4.437587 ACCATCCTGGCAGGCAGC 62.438 66.667 29.02 0.00 42.67 5.25
3575 3617 6.002082 TGTTCTCACTAAGCTAGTACTCACA 58.998 40.000 0.00 0.00 37.23 3.58
3600 3748 2.746362 CACAGCAAAGGAATCTCCACTC 59.254 50.000 0.00 0.00 39.61 3.51
3603 3751 3.507162 TTCACAGCAAAGGAATCTCCA 57.493 42.857 0.00 0.00 39.61 3.86
3628 3776 4.158394 CCACCTAACTACTTACACGCCTTA 59.842 45.833 0.00 0.00 0.00 2.69
3643 3791 4.974645 TCATATGATCCACCCACCTAAC 57.025 45.455 0.00 0.00 0.00 2.34
3731 3879 4.237809 GCGCTTCCGATTTCCCGC 62.238 66.667 0.00 0.00 36.29 6.13
3758 3907 2.278206 CATCTCCGTCGTCTGCCG 60.278 66.667 0.00 0.00 38.13 5.69
3866 4020 7.768807 TCTTAGCTAGATAGAATGGAGTTCC 57.231 40.000 0.00 0.00 37.56 3.62
3893 4047 1.154225 CACGCCTGCAAACGAATCC 60.154 57.895 14.31 0.00 0.00 3.01
3944 4187 0.895100 TTCCAGGCAGCGCTTCAAAT 60.895 50.000 7.50 0.00 0.00 2.32
4010 4254 4.876107 ACGAGAAATATGACGGCAGAAAAT 59.124 37.500 0.00 0.00 0.00 1.82
4022 4266 8.843733 CAAACACAAGAAATCACGAGAAATATG 58.156 33.333 0.00 0.00 0.00 1.78
4096 4340 7.846101 AGAATGAAATTTCAGAACCTTTCCT 57.154 32.000 24.17 10.13 41.08 3.36
4097 4341 8.143835 TCAAGAATGAAATTTCAGAACCTTTCC 58.856 33.333 24.17 8.45 41.08 3.13
4098 4342 9.533253 TTCAAGAATGAAATTTCAGAACCTTTC 57.467 29.630 24.17 19.99 42.47 2.62
4270 4522 9.801873 GGCTACAAAAATATCTGCTTCAAAATA 57.198 29.630 0.00 0.00 0.00 1.40
4272 4524 7.814107 CAGGCTACAAAAATATCTGCTTCAAAA 59.186 33.333 0.00 0.00 0.00 2.44
4278 4530 3.633986 GGCAGGCTACAAAAATATCTGCT 59.366 43.478 11.35 0.00 43.69 4.24
4283 4535 4.772100 ACAAGTGGCAGGCTACAAAAATAT 59.228 37.500 10.43 0.00 0.00 1.28
4323 4575 5.702209 TGAGTTCGGAGGGTTTACAATTTAC 59.298 40.000 0.00 0.00 0.00 2.01
4328 4580 2.224354 GGTGAGTTCGGAGGGTTTACAA 60.224 50.000 0.00 0.00 0.00 2.41
4334 4586 1.609794 GAGGGTGAGTTCGGAGGGT 60.610 63.158 0.00 0.00 0.00 4.34
4335 4587 1.608717 CTGAGGGTGAGTTCGGAGGG 61.609 65.000 0.00 0.00 0.00 4.30
4336 4588 0.612174 TCTGAGGGTGAGTTCGGAGG 60.612 60.000 0.00 0.00 0.00 4.30
4337 4589 1.067495 GTTCTGAGGGTGAGTTCGGAG 60.067 57.143 0.00 0.00 30.86 4.63
4338 4590 0.966920 GTTCTGAGGGTGAGTTCGGA 59.033 55.000 0.00 0.00 0.00 4.55
4339 4591 0.969894 AGTTCTGAGGGTGAGTTCGG 59.030 55.000 0.00 0.00 0.00 4.30
4340 4592 1.889829 AGAGTTCTGAGGGTGAGTTCG 59.110 52.381 0.00 0.00 0.00 3.95
4341 4593 2.232696 GGAGAGTTCTGAGGGTGAGTTC 59.767 54.545 0.00 0.00 0.00 3.01
4342 4594 2.252714 GGAGAGTTCTGAGGGTGAGTT 58.747 52.381 0.00 0.00 0.00 3.01
4343 4595 1.551329 GGGAGAGTTCTGAGGGTGAGT 60.551 57.143 0.00 0.00 0.00 3.41
4344 4596 1.190643 GGGAGAGTTCTGAGGGTGAG 58.809 60.000 0.00 0.00 0.00 3.51
4345 4597 0.787084 AGGGAGAGTTCTGAGGGTGA 59.213 55.000 0.00 0.00 0.00 4.02
4346 4598 1.190643 GAGGGAGAGTTCTGAGGGTG 58.809 60.000 0.00 0.00 0.00 4.61
4353 4605 1.258676 GTGTTCCGAGGGAGAGTTCT 58.741 55.000 0.00 0.00 31.21 3.01
4387 4639 6.832520 TGTTTGCTCTTTTGCCATATTAGA 57.167 33.333 0.00 0.00 0.00 2.10
4399 4651 5.603596 TGATGCTTGAATTGTTTGCTCTTT 58.396 33.333 0.00 0.00 0.00 2.52
4420 4672 2.302733 TCTAGTGTGCTCCATTGCTTGA 59.697 45.455 0.00 0.00 0.00 3.02
4500 4752 8.375506 GGATTTGATGGTAGGATGACACTATAA 58.624 37.037 0.00 0.00 0.00 0.98
4504 4756 4.474651 TGGATTTGATGGTAGGATGACACT 59.525 41.667 0.00 0.00 0.00 3.55
4536 4788 5.159209 CCAATTAGCGGTAGTAGGATAACG 58.841 45.833 0.00 0.00 38.89 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.