Multiple sequence alignment - TraesCS2B01G201500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G201500 chr2B 100.000 5278 0 0 1 5278 180573059 180567782 0.000000e+00 9747.0
1 TraesCS2B01G201500 chr2B 95.732 164 7 0 523 686 23589093 23589256 1.130000e-66 265.0
2 TraesCS2B01G201500 chr2B 92.655 177 11 2 511 686 331245472 331245647 2.440000e-63 254.0
3 TraesCS2B01G201500 chr2B 97.297 37 1 0 1468 1504 180571556 180571520 4.410000e-06 63.9
4 TraesCS2B01G201500 chr2B 97.297 37 1 0 1504 1540 180571592 180571556 4.410000e-06 63.9
5 TraesCS2B01G201500 chr2D 91.285 2467 145 33 1504 3943 126974199 126971776 0.000000e+00 3301.0
6 TraesCS2B01G201500 chr2D 92.516 1216 67 11 3947 5158 126971727 126970532 0.000000e+00 1720.0
7 TraesCS2B01G201500 chr2D 85.081 677 51 25 733 1393 126974962 126974320 0.000000e+00 645.0
8 TraesCS2B01G201500 chr2D 87.395 357 28 11 147 498 126975394 126975050 1.380000e-105 394.0
9 TraesCS2B01G201500 chr2D 95.327 107 5 0 5172 5278 126970418 126970312 2.530000e-38 171.0
10 TraesCS2B01G201500 chr2D 83.810 105 11 2 1405 1504 126974267 126974164 1.560000e-15 95.3
11 TraesCS2B01G201500 chr2A 89.188 2488 155 47 1504 3943 133677618 133675197 0.000000e+00 3000.0
12 TraesCS2B01G201500 chr2A 92.740 730 31 15 3941 4652 133675152 133674427 0.000000e+00 1035.0
13 TraesCS2B01G201500 chr2A 82.290 751 81 26 784 1503 133678312 133677583 2.100000e-168 603.0
14 TraesCS2B01G201500 chr2A 95.633 229 8 2 4649 4876 133674165 133673938 3.000000e-97 366.0
15 TraesCS2B01G201500 chr2A 87.143 280 28 6 200 475 133678907 133678632 1.430000e-80 311.0
16 TraesCS2B01G201500 chr2A 95.732 164 7 0 523 686 12428441 12428604 1.130000e-66 265.0
17 TraesCS2B01G201500 chr2A 95.152 165 8 0 522 686 495825460 495825624 1.460000e-65 261.0
18 TraesCS2B01G201500 chr2A 96.875 32 1 0 4383 4414 133674746 133674715 3.000000e-03 54.7
19 TraesCS2B01G201500 chr7D 87.847 288 27 7 4873 5158 567337897 567338178 1.100000e-86 331.0
20 TraesCS2B01G201500 chr7D 96.825 63 2 0 5166 5228 591483689 591483751 7.230000e-19 106.0
21 TraesCS2B01G201500 chr1B 85.366 287 34 8 4879 5162 420236693 420236974 1.860000e-74 291.0
22 TraesCS2B01G201500 chr5D 87.097 248 24 7 4880 5124 264501047 264500805 1.870000e-69 274.0
23 TraesCS2B01G201500 chr5D 84.314 204 24 4 4620 4823 282377485 282377290 5.390000e-45 193.0
24 TraesCS2B01G201500 chr5D 93.151 73 4 1 5166 5238 454832635 454832706 7.230000e-19 106.0
25 TraesCS2B01G201500 chr5D 93.151 73 4 1 5166 5238 455602273 455602344 7.230000e-19 106.0
26 TraesCS2B01G201500 chr4B 95.732 164 7 0 523 686 20487363 20487526 1.130000e-66 265.0
27 TraesCS2B01G201500 chr4B 93.143 175 10 2 513 686 492222950 492223123 6.780000e-64 255.0
28 TraesCS2B01G201500 chr4B 83.951 243 29 6 4883 5124 630641093 630640860 1.910000e-54 224.0
29 TraesCS2B01G201500 chr3B 95.732 164 7 0 523 686 658491675 658491838 1.130000e-66 265.0
30 TraesCS2B01G201500 chr3B 94.675 169 9 0 518 686 637665029 637665197 4.050000e-66 263.0
31 TraesCS2B01G201500 chr3B 83.471 242 26 11 4883 5124 63429858 63430085 4.140000e-51 213.0
32 TraesCS2B01G201500 chr3B 73.286 423 102 9 2684 3101 683429418 683429002 1.530000e-30 145.0
33 TraesCS2B01G201500 chr3B 80.597 201 28 8 4625 4823 773017526 773017335 1.530000e-30 145.0
34 TraesCS2B01G201500 chrUn 86.531 245 25 7 4883 5124 40578237 40578476 4.050000e-66 263.0
35 TraesCS2B01G201500 chrUn 98.413 63 1 0 5166 5228 126895946 126896008 1.550000e-20 111.0
36 TraesCS2B01G201500 chr7B 86.508 252 16 12 4883 5128 601118658 601118419 1.460000e-65 261.0
37 TraesCS2B01G201500 chr7B 94.611 167 9 0 520 686 534818573 534818739 5.240000e-65 259.0
38 TraesCS2B01G201500 chr7B 80.738 244 27 11 4883 5124 125013829 125014054 7.030000e-39 172.0
39 TraesCS2B01G201500 chr7A 83.636 275 20 14 4871 5124 8231153 8231423 8.840000e-58 235.0
40 TraesCS2B01G201500 chr7A 94.030 67 3 1 5166 5231 90373526 90373592 3.360000e-17 100.0
41 TraesCS2B01G201500 chr7A 96.875 32 1 0 4383 4414 709786784 709786753 3.000000e-03 54.7
42 TraesCS2B01G201500 chr3A 82.096 229 41 0 3658 3886 654317256 654317028 4.170000e-46 196.0
43 TraesCS2B01G201500 chr5B 80.769 234 32 7 4586 4815 320495374 320495150 2.530000e-38 171.0
44 TraesCS2B01G201500 chr3D 73.821 424 99 10 2684 3101 519249459 519249042 1.970000e-34 158.0
45 TraesCS2B01G201500 chr5A 87.179 117 6 5 4620 4736 374920231 374920124 2.000000e-24 124.0
46 TraesCS2B01G201500 chr5A 93.151 73 4 1 5166 5238 572216210 572216281 7.230000e-19 106.0
47 TraesCS2B01G201500 chr4A 93.243 74 4 1 5166 5238 684280007 684279934 2.010000e-19 108.0
48 TraesCS2B01G201500 chr6D 96.825 63 2 0 5166 5228 423545331 423545393 7.230000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G201500 chr2B 180567782 180573059 5277 True 3291.600000 9747 98.198000 1 5278 3 chr2B.!!$R1 5277
1 TraesCS2B01G201500 chr2D 126970312 126975394 5082 True 1054.383333 3301 89.235667 147 5278 6 chr2D.!!$R1 5131
2 TraesCS2B01G201500 chr2A 133673938 133678907 4969 True 894.950000 3000 90.644833 200 4876 6 chr2A.!!$R1 4676

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.100503 ACGTTTGCAACACAAGGCTC 59.899 50.0 0.00 0.0 40.06 4.70 F
109 110 0.108329 ACAAGGCTCCGGTTGATACG 60.108 55.0 9.33 0.0 0.00 3.06 F
1502 1644 0.031857 CATCGTAGCCTGAGAGCCTG 59.968 60.0 0.00 0.0 0.00 4.85 F
1503 1645 0.106469 ATCGTAGCCTGAGAGCCTGA 60.106 55.0 0.00 0.0 0.00 3.86 F
1504 1646 0.323451 TCGTAGCCTGAGAGCCTGAA 60.323 55.0 0.00 0.0 0.00 3.02 F
2982 3162 0.584396 TTGCCACATTCGACGTCAAC 59.416 50.0 17.16 0.0 0.00 3.18 F
3452 3647 0.667487 ACAACAGCACCATCGTCGAG 60.667 55.0 0.00 0.0 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1377 1467 0.252197 CCCTAAACAAGGTCCTCCCG 59.748 60.000 0.00 0.00 44.90 5.14 R
1764 1918 0.392193 ATAGTGTGCAGCCACTCAGC 60.392 55.000 16.97 0.00 44.36 4.26 R
3278 3472 0.108138 CCACGGCAGGAAGTAGGAAG 60.108 60.000 0.00 0.00 0.00 3.46 R
3279 3473 1.980052 CCACGGCAGGAAGTAGGAA 59.020 57.895 0.00 0.00 0.00 3.36 R
3281 3475 2.125106 GCCACGGCAGGAAGTAGG 60.125 66.667 2.36 0.00 41.49 3.18 R
4154 4397 2.369633 ATCTGGAGGCGGCATCACA 61.370 57.895 17.05 10.72 0.00 3.58 R
5014 5575 0.303493 CAGTCAAACACCGGTCAACG 59.697 55.000 2.59 0.00 43.80 4.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.104766 CTGCATGGATGGACACGC 58.895 61.111 0.00 0.00 0.00 5.34
18 19 2.816360 CTGCATGGATGGACACGCG 61.816 63.158 3.53 3.53 0.00 6.01
19 20 2.511373 GCATGGATGGACACGCGA 60.511 61.111 15.93 0.00 0.00 5.87
20 21 2.813179 GCATGGATGGACACGCGAC 61.813 63.158 15.93 3.33 0.00 5.19
21 22 2.202743 ATGGATGGACACGCGACG 60.203 61.111 15.93 5.81 0.00 5.12
38 39 3.785499 GCCGACGTCCGCCTTTTC 61.785 66.667 16.74 0.00 36.84 2.29
39 40 3.475774 CCGACGTCCGCCTTTTCG 61.476 66.667 10.58 0.00 36.84 3.46
40 41 2.732094 CGACGTCCGCCTTTTCGT 60.732 61.111 10.58 0.00 39.21 3.85
41 42 2.713894 CGACGTCCGCCTTTTCGTC 61.714 63.158 10.58 6.50 45.70 4.20
42 43 2.356673 ACGTCCGCCTTTTCGTCC 60.357 61.111 0.00 0.00 30.71 4.79
43 44 3.475774 CGTCCGCCTTTTCGTCCG 61.476 66.667 0.00 0.00 0.00 4.79
44 45 3.785499 GTCCGCCTTTTCGTCCGC 61.785 66.667 0.00 0.00 0.00 5.54
45 46 4.302509 TCCGCCTTTTCGTCCGCA 62.303 61.111 0.00 0.00 0.00 5.69
46 47 3.350612 CCGCCTTTTCGTCCGCAA 61.351 61.111 0.00 0.00 0.00 4.85
47 48 2.127383 CGCCTTTTCGTCCGCAAC 60.127 61.111 0.00 0.00 0.00 4.17
48 49 2.254350 GCCTTTTCGTCCGCAACC 59.746 61.111 0.00 0.00 0.00 3.77
49 50 2.258726 GCCTTTTCGTCCGCAACCT 61.259 57.895 0.00 0.00 0.00 3.50
50 51 1.792118 GCCTTTTCGTCCGCAACCTT 61.792 55.000 0.00 0.00 0.00 3.50
51 52 0.666374 CCTTTTCGTCCGCAACCTTT 59.334 50.000 0.00 0.00 0.00 3.11
52 53 1.066454 CCTTTTCGTCCGCAACCTTTT 59.934 47.619 0.00 0.00 0.00 2.27
53 54 2.381589 CTTTTCGTCCGCAACCTTTTC 58.618 47.619 0.00 0.00 0.00 2.29
54 55 1.670791 TTTCGTCCGCAACCTTTTCT 58.329 45.000 0.00 0.00 0.00 2.52
55 56 1.223187 TTCGTCCGCAACCTTTTCTC 58.777 50.000 0.00 0.00 0.00 2.87
56 57 0.601841 TCGTCCGCAACCTTTTCTCC 60.602 55.000 0.00 0.00 0.00 3.71
57 58 1.574702 CGTCCGCAACCTTTTCTCCC 61.575 60.000 0.00 0.00 0.00 4.30
58 59 1.302192 TCCGCAACCTTTTCTCCCG 60.302 57.895 0.00 0.00 0.00 5.14
59 60 1.599797 CCGCAACCTTTTCTCCCGT 60.600 57.895 0.00 0.00 0.00 5.28
60 61 0.320946 CCGCAACCTTTTCTCCCGTA 60.321 55.000 0.00 0.00 0.00 4.02
61 62 1.515081 CGCAACCTTTTCTCCCGTAA 58.485 50.000 0.00 0.00 0.00 3.18
62 63 1.463444 CGCAACCTTTTCTCCCGTAAG 59.537 52.381 0.00 0.00 0.00 2.34
94 95 4.145053 CGTTTAACGTTTGCAACACAAG 57.855 40.909 5.91 0.00 36.74 3.16
95 96 3.001562 CGTTTAACGTTTGCAACACAAGG 60.002 43.478 5.91 0.00 36.74 3.61
96 97 2.196295 TAACGTTTGCAACACAAGGC 57.804 45.000 5.91 0.00 40.06 4.35
97 98 0.530288 AACGTTTGCAACACAAGGCT 59.470 45.000 0.00 0.00 40.06 4.58
98 99 0.100503 ACGTTTGCAACACAAGGCTC 59.899 50.000 0.00 0.00 40.06 4.70
99 100 0.594796 CGTTTGCAACACAAGGCTCC 60.595 55.000 0.00 0.00 40.06 4.70
100 101 0.594796 GTTTGCAACACAAGGCTCCG 60.595 55.000 0.00 0.00 40.06 4.63
101 102 1.733402 TTTGCAACACAAGGCTCCGG 61.733 55.000 0.00 0.00 40.06 5.14
102 103 2.594592 GCAACACAAGGCTCCGGT 60.595 61.111 0.00 0.00 0.00 5.28
103 104 2.193536 GCAACACAAGGCTCCGGTT 61.194 57.895 0.00 0.00 0.00 4.44
104 105 1.654220 CAACACAAGGCTCCGGTTG 59.346 57.895 0.00 0.25 33.73 3.77
105 106 0.817634 CAACACAAGGCTCCGGTTGA 60.818 55.000 15.76 0.00 40.86 3.18
106 107 0.110486 AACACAAGGCTCCGGTTGAT 59.890 50.000 9.33 0.00 0.00 2.57
107 108 0.981183 ACACAAGGCTCCGGTTGATA 59.019 50.000 9.33 0.00 0.00 2.15
108 109 1.338769 ACACAAGGCTCCGGTTGATAC 60.339 52.381 9.33 0.00 0.00 2.24
109 110 0.108329 ACAAGGCTCCGGTTGATACG 60.108 55.000 9.33 0.00 0.00 3.06
115 116 2.125431 CCGGTTGATACGGCCGTT 60.125 61.111 38.94 23.87 45.34 4.44
116 117 2.169146 CCGGTTGATACGGCCGTTC 61.169 63.158 38.94 29.96 45.34 3.95
117 118 2.510594 CGGTTGATACGGCCGTTCG 61.511 63.158 38.94 24.10 40.53 3.95
118 119 2.699212 GTTGATACGGCCGTTCGC 59.301 61.111 38.94 25.00 0.00 4.70
119 120 2.881827 TTGATACGGCCGTTCGCG 60.882 61.111 38.94 6.09 38.94 5.87
122 123 3.812166 GATACGGCCGTTCGCGCTA 62.812 63.158 38.94 17.74 38.94 4.26
123 124 3.818982 ATACGGCCGTTCGCGCTAG 62.819 63.158 38.94 0.00 38.94 3.42
126 127 4.564116 GGCCGTTCGCGCTAGCTA 62.564 66.667 13.93 0.00 42.32 3.32
127 128 3.025176 GCCGTTCGCGCTAGCTAG 61.025 66.667 16.84 16.84 42.32 3.42
128 129 2.408022 CCGTTCGCGCTAGCTAGT 59.592 61.111 21.62 0.00 42.32 2.57
129 130 1.939785 CCGTTCGCGCTAGCTAGTG 60.940 63.158 26.65 26.65 42.32 2.74
130 131 1.939785 CGTTCGCGCTAGCTAGTGG 60.940 63.158 30.30 21.41 42.32 4.00
131 132 1.589196 GTTCGCGCTAGCTAGTGGG 60.589 63.158 33.91 33.91 44.92 4.61
133 134 2.805546 CGCGCTAGCTAGTGGGAA 59.194 61.111 35.48 0.00 45.99 3.97
134 135 1.141019 CGCGCTAGCTAGTGGGAAA 59.859 57.895 35.48 0.00 45.99 3.13
135 136 0.872021 CGCGCTAGCTAGTGGGAAAG 60.872 60.000 35.48 14.81 45.99 2.62
136 137 0.175989 GCGCTAGCTAGTGGGAAAGT 59.824 55.000 30.30 0.00 41.01 2.66
137 138 1.803252 GCGCTAGCTAGTGGGAAAGTC 60.803 57.143 30.30 12.12 41.01 3.01
138 139 1.202428 CGCTAGCTAGTGGGAAAGTCC 60.202 57.143 23.97 2.43 35.23 3.85
139 140 2.112190 GCTAGCTAGTGGGAAAGTCCT 58.888 52.381 21.62 0.00 36.57 3.85
140 141 2.502130 GCTAGCTAGTGGGAAAGTCCTT 59.498 50.000 21.62 0.00 36.57 3.36
141 142 3.055021 GCTAGCTAGTGGGAAAGTCCTTT 60.055 47.826 21.62 0.00 36.57 3.11
142 143 3.425162 AGCTAGTGGGAAAGTCCTTTG 57.575 47.619 0.00 0.00 36.57 2.77
143 144 2.711547 AGCTAGTGGGAAAGTCCTTTGT 59.288 45.455 0.00 0.00 36.57 2.83
144 145 2.814336 GCTAGTGGGAAAGTCCTTTGTG 59.186 50.000 0.00 0.00 36.57 3.33
145 146 3.747708 GCTAGTGGGAAAGTCCTTTGTGT 60.748 47.826 0.00 0.00 36.57 3.72
153 154 4.202020 GGAAAGTCCTTTGTGTGGAAAGAC 60.202 45.833 0.00 0.00 35.30 3.01
162 163 1.279840 GTGGAAAGACTGCGCACAC 59.720 57.895 5.66 7.77 0.00 3.82
180 181 3.006940 ACACAAGACACGAAAAGCTGAA 58.993 40.909 0.00 0.00 0.00 3.02
196 197 7.541122 AAAGCTGAACTTTCTTATATCGGTC 57.459 36.000 0.00 0.00 45.78 4.79
197 198 6.472686 AGCTGAACTTTCTTATATCGGTCT 57.527 37.500 0.00 0.00 0.00 3.85
198 199 6.276847 AGCTGAACTTTCTTATATCGGTCTG 58.723 40.000 0.00 0.00 0.00 3.51
199 200 5.463724 GCTGAACTTTCTTATATCGGTCTGG 59.536 44.000 0.00 0.00 0.00 3.86
200 201 6.683110 GCTGAACTTTCTTATATCGGTCTGGA 60.683 42.308 0.00 0.00 0.00 3.86
202 203 7.265673 TGAACTTTCTTATATCGGTCTGGAAG 58.734 38.462 0.00 0.00 0.00 3.46
203 204 5.602628 ACTTTCTTATATCGGTCTGGAAGC 58.397 41.667 0.00 0.00 0.00 3.86
210 211 0.762418 TCGGTCTGGAAGCAAAAGGA 59.238 50.000 0.00 0.00 0.00 3.36
211 212 1.160137 CGGTCTGGAAGCAAAAGGAG 58.840 55.000 0.00 0.00 0.00 3.69
215 216 1.172175 CTGGAAGCAAAAGGAGCCTC 58.828 55.000 0.00 0.00 0.00 4.70
234 235 2.184322 GGTTCGGATCAGCGAGCA 59.816 61.111 9.62 0.00 0.00 4.26
235 236 2.167861 GGTTCGGATCAGCGAGCAC 61.168 63.158 9.62 0.70 0.00 4.40
236 237 1.153745 GTTCGGATCAGCGAGCACT 60.154 57.895 0.00 0.00 0.00 4.40
260 261 4.648762 ACTAGTGATGAGGACTGATGAAGG 59.351 45.833 0.00 0.00 0.00 3.46
262 263 4.296912 AGTGATGAGGACTGATGAAGGAT 58.703 43.478 0.00 0.00 0.00 3.24
264 265 5.901853 AGTGATGAGGACTGATGAAGGATAA 59.098 40.000 0.00 0.00 0.00 1.75
286 287 9.248291 GATAAAAATCCATCACGCACATTAATT 57.752 29.630 0.00 0.00 0.00 1.40
287 288 6.890663 AAAATCCATCACGCACATTAATTG 57.109 33.333 0.00 0.00 0.00 2.32
361 365 5.556006 GCGACGAGAAATCTTTCATCATCAG 60.556 44.000 0.00 0.00 39.61 2.90
421 426 4.194720 ATCGGCAGAGCGTCGGAC 62.195 66.667 0.00 0.00 0.00 4.79
494 499 1.482593 CCATCCGGAACAAGCTACTCT 59.517 52.381 9.01 0.00 0.00 3.24
498 503 1.618861 CGGAACAAGCTACTCTCACG 58.381 55.000 0.00 0.00 0.00 4.35
502 507 3.675698 GGAACAAGCTACTCTCACGAAAG 59.324 47.826 0.00 0.00 0.00 2.62
525 530 8.860780 AAGTGCTACAGTACTTACTAGTTACT 57.139 34.615 10.51 0.00 46.53 2.24
526 531 8.491331 AGTGCTACAGTACTTACTAGTTACTC 57.509 38.462 0.00 0.00 37.74 2.59
527 532 7.552330 AGTGCTACAGTACTTACTAGTTACTCC 59.448 40.741 0.00 0.00 37.74 3.85
528 533 6.825721 TGCTACAGTACTTACTAGTTACTCCC 59.174 42.308 0.00 0.00 35.78 4.30
530 535 7.226523 GCTACAGTACTTACTAGTTACTCCCTC 59.773 44.444 0.00 0.00 35.78 4.30
532 537 7.111466 ACAGTACTTACTAGTTACTCCCTCTG 58.889 42.308 0.00 3.49 35.78 3.35
534 539 7.611079 CAGTACTTACTAGTTACTCCCTCTGTT 59.389 40.741 0.00 0.00 35.78 3.16
535 540 7.828717 AGTACTTACTAGTTACTCCCTCTGTTC 59.171 40.741 0.00 0.00 35.78 3.18
536 541 5.951148 ACTTACTAGTTACTCCCTCTGTTCC 59.049 44.000 0.00 0.00 0.00 3.62
537 542 4.678538 ACTAGTTACTCCCTCTGTTCCT 57.321 45.455 0.00 0.00 0.00 3.36
539 544 6.150034 ACTAGTTACTCCCTCTGTTCCTAA 57.850 41.667 0.00 0.00 0.00 2.69
540 545 5.951148 ACTAGTTACTCCCTCTGTTCCTAAC 59.049 44.000 0.00 0.00 0.00 2.34
542 547 6.150034 AGTTACTCCCTCTGTTCCTAACTA 57.850 41.667 0.00 0.00 0.00 2.24
544 549 7.190501 AGTTACTCCCTCTGTTCCTAACTAAT 58.809 38.462 0.00 0.00 0.00 1.73
545 550 7.679025 AGTTACTCCCTCTGTTCCTAACTAATT 59.321 37.037 0.00 0.00 0.00 1.40
546 551 6.301169 ACTCCCTCTGTTCCTAACTAATTG 57.699 41.667 0.00 0.00 0.00 2.32
548 553 6.070710 ACTCCCTCTGTTCCTAACTAATTGTC 60.071 42.308 0.00 0.00 0.00 3.18
549 554 6.023603 TCCCTCTGTTCCTAACTAATTGTCT 58.976 40.000 0.00 0.00 0.00 3.41
550 555 6.500751 TCCCTCTGTTCCTAACTAATTGTCTT 59.499 38.462 0.00 0.00 0.00 3.01
551 556 7.017254 TCCCTCTGTTCCTAACTAATTGTCTTT 59.983 37.037 0.00 0.00 0.00 2.52
571 576 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
572 577 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
573 578 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
574 579 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
581 586 8.873215 AGATTTCAACAAGTGACTATATACGG 57.127 34.615 0.00 0.00 35.39 4.02
583 588 8.873215 ATTTCAACAAGTGACTATATACGGAG 57.127 34.615 0.00 0.00 35.39 4.63
584 589 5.828747 TCAACAAGTGACTATATACGGAGC 58.171 41.667 0.00 0.00 0.00 4.70
589 594 7.272978 ACAAGTGACTATATACGGAGCAAAAT 58.727 34.615 0.00 0.00 0.00 1.82
590 595 7.224753 ACAAGTGACTATATACGGAGCAAAATG 59.775 37.037 0.00 0.00 0.00 2.32
591 596 7.050970 AGTGACTATATACGGAGCAAAATGA 57.949 36.000 0.00 0.00 0.00 2.57
592 597 7.148641 AGTGACTATATACGGAGCAAAATGAG 58.851 38.462 0.00 0.00 0.00 2.90
593 598 6.924060 GTGACTATATACGGAGCAAAATGAGT 59.076 38.462 0.00 0.00 0.00 3.41
596 601 7.497595 ACTATATACGGAGCAAAATGAGTGAA 58.502 34.615 0.00 0.00 0.00 3.18
597 602 8.150945 ACTATATACGGAGCAAAATGAGTGAAT 58.849 33.333 0.00 0.00 0.00 2.57
598 603 5.741388 ATACGGAGCAAAATGAGTGAATC 57.259 39.130 0.00 0.00 0.00 2.52
599 604 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
601 606 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
603 608 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
616 621 8.764524 AGTGAATCTACACTCTAAAACATGTC 57.235 34.615 0.00 0.00 46.36 3.06
617 622 8.589338 AGTGAATCTACACTCTAAAACATGTCT 58.411 33.333 0.00 0.00 46.36 3.41
635 640 9.639601 AACATGTCTATGTATATCCGTATGTTG 57.360 33.333 0.00 0.00 46.54 3.33
639 644 9.511272 TGTCTATGTATATCCGTATGTTGTAGT 57.489 33.333 0.00 0.00 0.00 2.73
640 645 9.985318 GTCTATGTATATCCGTATGTTGTAGTC 57.015 37.037 0.00 0.00 0.00 2.59
641 646 9.955102 TCTATGTATATCCGTATGTTGTAGTCT 57.045 33.333 0.00 0.00 0.00 3.24
649 654 7.634671 TCCGTATGTTGTAGTCTATTTGAGA 57.365 36.000 0.00 0.00 0.00 3.27
650 655 8.234136 TCCGTATGTTGTAGTCTATTTGAGAT 57.766 34.615 0.00 0.00 36.29 2.75
651 656 8.135529 TCCGTATGTTGTAGTCTATTTGAGATG 58.864 37.037 0.00 0.00 36.29 2.90
652 657 7.382488 CCGTATGTTGTAGTCTATTTGAGATGG 59.618 40.741 0.00 0.00 36.29 3.51
658 663 7.898014 TGTAGTCTATTTGAGATGGCTAGAA 57.102 36.000 0.00 0.00 36.29 2.10
659 664 8.306313 TGTAGTCTATTTGAGATGGCTAGAAA 57.694 34.615 0.00 0.00 36.29 2.52
660 665 8.417106 TGTAGTCTATTTGAGATGGCTAGAAAG 58.583 37.037 0.00 0.00 36.29 2.62
661 666 7.667575 AGTCTATTTGAGATGGCTAGAAAGA 57.332 36.000 0.00 0.00 36.29 2.52
662 667 7.496747 AGTCTATTTGAGATGGCTAGAAAGAC 58.503 38.462 0.00 0.00 36.29 3.01
664 669 7.766278 GTCTATTTGAGATGGCTAGAAAGACAA 59.234 37.037 0.00 0.00 46.32 3.18
666 671 7.951347 ATTTGAGATGGCTAGAAAGACAATT 57.049 32.000 0.00 0.00 46.32 2.32
668 673 9.638176 ATTTGAGATGGCTAGAAAGACAATTAT 57.362 29.630 0.00 0.00 46.32 1.28
669 674 9.466497 TTTGAGATGGCTAGAAAGACAATTATT 57.534 29.630 0.00 0.00 46.32 1.40
670 675 9.466497 TTGAGATGGCTAGAAAGACAATTATTT 57.534 29.630 0.00 0.00 46.32 1.40
672 677 8.230472 AGATGGCTAGAAAGACAATTATTTGG 57.770 34.615 0.00 0.00 46.32 3.28
673 678 8.055181 AGATGGCTAGAAAGACAATTATTTGGA 58.945 33.333 0.00 0.00 46.32 3.53
674 679 8.593945 ATGGCTAGAAAGACAATTATTTGGAA 57.406 30.769 0.00 0.00 46.32 3.53
675 680 8.415950 TGGCTAGAAAGACAATTATTTGGAAA 57.584 30.769 0.00 0.00 38.01 3.13
676 681 8.303876 TGGCTAGAAAGACAATTATTTGGAAAC 58.696 33.333 0.00 0.00 38.01 2.78
677 682 7.484959 GGCTAGAAAGACAATTATTTGGAAACG 59.515 37.037 0.00 0.00 37.15 3.60
678 683 7.484959 GCTAGAAAGACAATTATTTGGAAACGG 59.515 37.037 0.00 0.00 37.15 4.44
679 684 7.519032 AGAAAGACAATTATTTGGAAACGGA 57.481 32.000 2.66 0.00 37.15 4.69
680 685 7.593825 AGAAAGACAATTATTTGGAAACGGAG 58.406 34.615 2.66 0.00 37.15 4.63
681 686 5.897377 AGACAATTATTTGGAAACGGAGG 57.103 39.130 2.66 0.00 37.15 4.30
682 687 4.705023 AGACAATTATTTGGAAACGGAGGG 59.295 41.667 2.66 0.00 37.15 4.30
683 688 4.668636 ACAATTATTTGGAAACGGAGGGA 58.331 39.130 2.66 0.00 37.15 4.20
684 689 4.705023 ACAATTATTTGGAAACGGAGGGAG 59.295 41.667 2.66 0.00 37.15 4.30
685 690 4.586306 ATTATTTGGAAACGGAGGGAGT 57.414 40.909 0.00 0.00 0.00 3.85
686 691 2.200373 ATTTGGAAACGGAGGGAGTG 57.800 50.000 0.00 0.00 0.00 3.51
687 692 0.536460 TTTGGAAACGGAGGGAGTGC 60.536 55.000 0.00 0.00 0.00 4.40
698 703 1.612442 GGGAGTGCTACCCAGTGGA 60.612 63.158 11.95 0.00 46.05 4.02
723 739 1.136110 CCAAGAAACAAACAAGCCGGT 59.864 47.619 1.90 0.00 0.00 5.28
724 740 2.359531 CCAAGAAACAAACAAGCCGGTA 59.640 45.455 1.90 0.00 0.00 4.02
726 742 1.607148 AGAAACAAACAAGCCGGTAGC 59.393 47.619 1.90 0.00 44.25 3.58
736 752 4.514577 CCGGTAGCTGGCTCACGG 62.515 72.222 18.26 18.26 38.44 4.94
737 753 3.449227 CGGTAGCTGGCTCACGGA 61.449 66.667 0.00 0.00 0.00 4.69
738 754 2.978824 GGTAGCTGGCTCACGGAA 59.021 61.111 0.00 0.00 0.00 4.30
739 755 1.153549 GGTAGCTGGCTCACGGAAG 60.154 63.158 0.00 0.00 0.00 3.46
743 783 2.970974 GCTGGCTCACGGAAGCAAC 61.971 63.158 12.54 0.00 44.35 4.17
767 807 2.990066 AAGCTTCCCACGAGAATAGG 57.010 50.000 0.00 0.00 0.00 2.57
769 809 3.028094 AGCTTCCCACGAGAATAGGTA 57.972 47.619 0.00 0.00 0.00 3.08
770 810 2.959707 AGCTTCCCACGAGAATAGGTAG 59.040 50.000 0.00 0.00 0.00 3.18
771 811 2.546162 GCTTCCCACGAGAATAGGTAGC 60.546 54.545 0.00 0.00 0.00 3.58
772 812 2.750141 TCCCACGAGAATAGGTAGCT 57.250 50.000 0.00 0.00 0.00 3.32
774 814 2.032620 CCCACGAGAATAGGTAGCTGT 58.967 52.381 4.27 0.00 0.00 4.40
775 815 2.223829 CCCACGAGAATAGGTAGCTGTG 60.224 54.545 4.27 2.84 0.00 3.66
776 816 2.427453 CCACGAGAATAGGTAGCTGTGT 59.573 50.000 4.27 0.00 0.00 3.72
777 817 3.439293 CACGAGAATAGGTAGCTGTGTG 58.561 50.000 4.27 0.00 0.00 3.82
779 819 2.159240 CGAGAATAGGTAGCTGTGTGCA 60.159 50.000 4.27 0.00 45.94 4.57
780 820 3.491619 CGAGAATAGGTAGCTGTGTGCAT 60.492 47.826 4.27 0.00 45.94 3.96
781 821 3.801698 AGAATAGGTAGCTGTGTGCATG 58.198 45.455 4.27 0.00 45.94 4.06
782 822 3.198635 AGAATAGGTAGCTGTGTGCATGT 59.801 43.478 4.27 0.00 45.94 3.21
791 843 2.244000 GTGTGCATGTACACGGCTT 58.756 52.632 27.59 0.00 43.74 4.35
818 870 2.560504 ACAACAAATCTGACTCGCACA 58.439 42.857 0.00 0.00 0.00 4.57
819 871 2.287915 ACAACAAATCTGACTCGCACAC 59.712 45.455 0.00 0.00 0.00 3.82
820 872 2.238942 ACAAATCTGACTCGCACACA 57.761 45.000 0.00 0.00 0.00 3.72
821 873 2.771089 ACAAATCTGACTCGCACACAT 58.229 42.857 0.00 0.00 0.00 3.21
853 905 3.201494 CCACGGGCACAACACAAA 58.799 55.556 0.00 0.00 0.00 2.83
855 907 1.226831 CACGGGCACAACACAAACC 60.227 57.895 0.00 0.00 0.00 3.27
856 908 1.379309 ACGGGCACAACACAAACCT 60.379 52.632 0.00 0.00 0.00 3.50
857 909 1.358759 CGGGCACAACACAAACCTC 59.641 57.895 0.00 0.00 0.00 3.85
858 910 1.358759 GGGCACAACACAAACCTCG 59.641 57.895 0.00 0.00 0.00 4.63
886 956 2.055042 CCTCACTCTCTGACCCCGG 61.055 68.421 0.00 0.00 0.00 5.73
990 1064 1.003112 ACTCACTCGAGCGACCTCT 60.003 57.895 13.61 0.00 43.66 3.69
991 1065 1.022451 ACTCACTCGAGCGACCTCTC 61.022 60.000 13.61 0.00 43.66 3.20
992 1066 1.711060 CTCACTCGAGCGACCTCTCC 61.711 65.000 13.61 0.00 35.90 3.71
1031 1109 3.195698 GGCACCGCGTCCATCTTC 61.196 66.667 4.92 0.00 0.00 2.87
1032 1110 3.195698 GCACCGCGTCCATCTTCC 61.196 66.667 4.92 0.00 0.00 3.46
1033 1111 2.511600 CACCGCGTCCATCTTCCC 60.512 66.667 4.92 0.00 0.00 3.97
1034 1112 3.782443 ACCGCGTCCATCTTCCCC 61.782 66.667 4.92 0.00 0.00 4.81
1035 1113 4.891727 CCGCGTCCATCTTCCCCG 62.892 72.222 4.92 0.00 0.00 5.73
1109 1187 1.904865 TGCCGTCGTCAGGTAAGGT 60.905 57.895 0.00 0.00 0.00 3.50
1110 1188 1.291272 GCCGTCGTCAGGTAAGGTT 59.709 57.895 0.00 0.00 0.00 3.50
1125 1203 7.236847 TCAGGTAAGGTTTCTTGATTTCCTCTA 59.763 37.037 0.00 0.00 34.59 2.43
1159 1241 1.294857 GGCTCTTGATTTCTCCGAGC 58.705 55.000 0.00 0.00 40.47 5.03
1196 1278 2.184322 TGCTCGGGCAAGATCGTC 59.816 61.111 8.00 0.00 46.36 4.20
1197 1279 2.351244 TGCTCGGGCAAGATCGTCT 61.351 57.895 8.00 0.00 46.36 4.18
1231 1314 2.022428 TGGGCTAGTTCTAGGGATCCAA 60.022 50.000 15.23 0.00 0.00 3.53
1232 1315 3.046374 GGGCTAGTTCTAGGGATCCAAA 58.954 50.000 15.23 0.00 0.00 3.28
1233 1316 3.181453 GGGCTAGTTCTAGGGATCCAAAC 60.181 52.174 15.23 11.62 0.00 2.93
1248 1331 1.269448 CCAAACACGGAGATTTGGGTG 59.731 52.381 7.69 0.00 46.03 4.61
1255 1338 1.826385 GGAGATTTGGGTGACTGGTG 58.174 55.000 0.00 0.00 0.00 4.17
1256 1339 1.168714 GAGATTTGGGTGACTGGTGC 58.831 55.000 0.00 0.00 0.00 5.01
1268 1358 3.015145 TGGTGCTAAGGGAGGGGC 61.015 66.667 0.00 0.00 0.00 5.80
1269 1359 3.810188 GGTGCTAAGGGAGGGGCC 61.810 72.222 0.00 0.00 0.00 5.80
1339 1429 3.993736 TCCGCCATAATAATGTGATCGTG 59.006 43.478 0.00 0.00 0.00 4.35
1344 1434 6.537566 GCCATAATAATGTGATCGTGATGAC 58.462 40.000 0.00 0.00 0.00 3.06
1360 1450 0.787787 TGACCAAGACGCGATTTTCG 59.212 50.000 15.93 0.00 43.89 3.46
1377 1467 2.186826 CGTCCGGGGATGCATTTCC 61.187 63.158 0.00 6.04 34.83 3.13
1475 1617 5.090652 TCTGTTTTCACGTCAATTACAGC 57.909 39.130 9.21 0.00 33.40 4.40
1485 1627 5.003804 ACGTCAATTACAGCCTTCTTTCAT 58.996 37.500 0.00 0.00 0.00 2.57
1486 1628 5.122396 ACGTCAATTACAGCCTTCTTTCATC 59.878 40.000 0.00 0.00 0.00 2.92
1487 1629 5.563842 GTCAATTACAGCCTTCTTTCATCG 58.436 41.667 0.00 0.00 0.00 3.84
1488 1630 5.122396 GTCAATTACAGCCTTCTTTCATCGT 59.878 40.000 0.00 0.00 0.00 3.73
1489 1631 6.312918 GTCAATTACAGCCTTCTTTCATCGTA 59.687 38.462 0.00 0.00 0.00 3.43
1490 1632 6.535150 TCAATTACAGCCTTCTTTCATCGTAG 59.465 38.462 0.00 0.00 0.00 3.51
1491 1633 2.622436 ACAGCCTTCTTTCATCGTAGC 58.378 47.619 0.00 0.00 0.00 3.58
1492 1634 1.936547 CAGCCTTCTTTCATCGTAGCC 59.063 52.381 0.00 0.00 0.00 3.93
1493 1635 1.834263 AGCCTTCTTTCATCGTAGCCT 59.166 47.619 0.00 0.00 0.00 4.58
1494 1636 1.936547 GCCTTCTTTCATCGTAGCCTG 59.063 52.381 0.00 0.00 0.00 4.85
1495 1637 2.418746 GCCTTCTTTCATCGTAGCCTGA 60.419 50.000 0.00 0.00 0.00 3.86
1496 1638 3.452474 CCTTCTTTCATCGTAGCCTGAG 58.548 50.000 0.00 0.00 0.00 3.35
1497 1639 3.131223 CCTTCTTTCATCGTAGCCTGAGA 59.869 47.826 0.00 0.00 0.00 3.27
1498 1640 4.358851 CTTCTTTCATCGTAGCCTGAGAG 58.641 47.826 0.00 0.00 0.00 3.20
1499 1641 2.099921 TCTTTCATCGTAGCCTGAGAGC 59.900 50.000 0.00 0.00 0.00 4.09
1500 1642 0.747255 TTCATCGTAGCCTGAGAGCC 59.253 55.000 0.00 0.00 0.00 4.70
1501 1643 0.106469 TCATCGTAGCCTGAGAGCCT 60.106 55.000 0.00 0.00 0.00 4.58
1502 1644 0.031857 CATCGTAGCCTGAGAGCCTG 59.968 60.000 0.00 0.00 0.00 4.85
1503 1645 0.106469 ATCGTAGCCTGAGAGCCTGA 60.106 55.000 0.00 0.00 0.00 3.86
1504 1646 0.323451 TCGTAGCCTGAGAGCCTGAA 60.323 55.000 0.00 0.00 0.00 3.02
1505 1647 0.749649 CGTAGCCTGAGAGCCTGAAT 59.250 55.000 0.00 0.00 0.00 2.57
1506 1648 1.137872 CGTAGCCTGAGAGCCTGAATT 59.862 52.381 0.00 0.00 0.00 2.17
1507 1649 2.362397 CGTAGCCTGAGAGCCTGAATTA 59.638 50.000 0.00 0.00 0.00 1.40
1508 1650 2.998316 AGCCTGAGAGCCTGAATTAC 57.002 50.000 0.00 0.00 0.00 1.89
1509 1651 2.191400 AGCCTGAGAGCCTGAATTACA 58.809 47.619 0.00 0.00 0.00 2.41
1510 1652 2.170187 AGCCTGAGAGCCTGAATTACAG 59.830 50.000 0.00 0.00 45.36 2.74
1511 1653 2.093235 GCCTGAGAGCCTGAATTACAGT 60.093 50.000 0.00 0.00 44.40 3.55
1512 1654 3.791245 CCTGAGAGCCTGAATTACAGTC 58.209 50.000 0.00 0.00 44.40 3.51
1513 1655 3.450457 CCTGAGAGCCTGAATTACAGTCT 59.550 47.826 0.00 0.00 44.40 3.24
1514 1656 4.081198 CCTGAGAGCCTGAATTACAGTCTT 60.081 45.833 0.00 0.00 44.40 3.01
1515 1657 5.078411 TGAGAGCCTGAATTACAGTCTTC 57.922 43.478 0.00 0.00 44.40 2.87
1516 1658 4.774726 TGAGAGCCTGAATTACAGTCTTCT 59.225 41.667 0.00 0.00 44.40 2.85
1517 1659 5.247110 TGAGAGCCTGAATTACAGTCTTCTT 59.753 40.000 0.00 0.00 44.40 2.52
1518 1660 6.120507 AGAGCCTGAATTACAGTCTTCTTT 57.879 37.500 0.00 0.00 44.40 2.52
1519 1661 6.169800 AGAGCCTGAATTACAGTCTTCTTTC 58.830 40.000 0.00 0.00 44.40 2.62
1585 1727 1.820519 CCCATCCCACATTTCACTGTG 59.179 52.381 0.17 0.17 44.92 3.66
1644 1789 2.028112 TCTTGCACCATTAGCTCTTCGT 60.028 45.455 0.00 0.00 0.00 3.85
1650 1795 4.744570 CACCATTAGCTCTTCGTGTTAGA 58.255 43.478 0.00 0.00 0.00 2.10
1651 1796 4.800993 CACCATTAGCTCTTCGTGTTAGAG 59.199 45.833 0.00 0.00 41.64 2.43
1719 1866 3.483574 CGCTTTTGTAGTTCATGTAGCCG 60.484 47.826 0.00 0.00 0.00 5.52
1721 1868 4.628333 GCTTTTGTAGTTCATGTAGCCGTA 59.372 41.667 0.00 0.00 0.00 4.02
1730 1884 3.724374 TCATGTAGCCGTATAGGTTTGC 58.276 45.455 0.00 0.00 43.70 3.68
1734 1888 4.209538 TGTAGCCGTATAGGTTTGCTCTA 58.790 43.478 0.00 0.00 43.70 2.43
1760 1914 7.701539 ATTATGACCAAATGCACTTAACAGA 57.298 32.000 0.00 0.00 0.00 3.41
1764 1918 5.200368 ACCAAATGCACTTAACAGAAAGG 57.800 39.130 0.00 0.00 0.00 3.11
1794 1948 4.222114 GCTGCACACTATTCTGTTTCAAC 58.778 43.478 0.00 0.00 0.00 3.18
1816 1970 3.616935 GCGAAAAACCCGCCTTATC 57.383 52.632 0.00 0.00 46.22 1.75
1928 2087 6.935167 TGATAACTTGATAAGTGACAGCTCA 58.065 36.000 0.00 0.00 41.91 4.26
2077 2238 1.136891 TGTCTGCTACCATGACATCCG 59.863 52.381 0.00 0.00 36.03 4.18
2079 2240 1.409064 TCTGCTACCATGACATCCGTC 59.591 52.381 0.00 0.00 42.93 4.79
2195 2356 2.305927 GGATGTGAAGAAGTGGAGGGAA 59.694 50.000 0.00 0.00 0.00 3.97
2205 2366 1.204146 GTGGAGGGAAGATGGCTACA 58.796 55.000 0.00 0.00 0.00 2.74
2235 2396 1.620819 AGCCAGTTCAGTCTGTTCGAT 59.379 47.619 0.00 0.00 34.02 3.59
2282 2443 3.181475 CCTATCGCTACACAAGTCCACAT 60.181 47.826 0.00 0.00 0.00 3.21
2298 2459 2.686915 CCACATCAGCTTTCTCCATTCC 59.313 50.000 0.00 0.00 0.00 3.01
2299 2460 3.618351 CACATCAGCTTTCTCCATTCCT 58.382 45.455 0.00 0.00 0.00 3.36
2300 2461 4.384537 CCACATCAGCTTTCTCCATTCCTA 60.385 45.833 0.00 0.00 0.00 2.94
2301 2462 4.574013 CACATCAGCTTTCTCCATTCCTAC 59.426 45.833 0.00 0.00 0.00 3.18
2302 2463 3.526931 TCAGCTTTCTCCATTCCTACG 57.473 47.619 0.00 0.00 0.00 3.51
2417 2582 7.115947 GTCAAAGAGATGCTGAAAAGAAAATGG 59.884 37.037 0.00 0.00 0.00 3.16
2450 2620 3.686016 TGGCTTCCCTGATAGTGTTTTC 58.314 45.455 0.00 0.00 0.00 2.29
2477 2647 6.834168 TTCCAACAGGAAAATTGGTCTATC 57.166 37.500 3.10 0.00 44.86 2.08
2532 2702 5.062934 TGACACGATCATTTACCGATTTGTC 59.937 40.000 0.00 0.00 37.05 3.18
2540 2710 1.732941 TACCGATTTGTCGCAGCATT 58.267 45.000 0.00 0.00 0.00 3.56
2541 2711 0.881118 ACCGATTTGTCGCAGCATTT 59.119 45.000 0.00 0.00 0.00 2.32
2542 2712 2.080693 ACCGATTTGTCGCAGCATTTA 58.919 42.857 0.00 0.00 0.00 1.40
2543 2713 2.486203 ACCGATTTGTCGCAGCATTTAA 59.514 40.909 0.00 0.00 0.00 1.52
2557 2727 5.743872 GCAGCATTTAATTAGGGTTTCTTCG 59.256 40.000 0.00 0.00 0.00 3.79
2625 2802 6.590234 ACAAAATCTTTTATCCTGTCCACC 57.410 37.500 0.00 0.00 0.00 4.61
2763 2943 4.410400 GTGTGGGCGGGGAAGGAG 62.410 72.222 0.00 0.00 0.00 3.69
2887 3067 2.614013 ACTTCCTTCCGGGGGCAT 60.614 61.111 0.00 0.00 35.33 4.40
2893 3073 3.158648 TTCCGGGGGCATCCTACG 61.159 66.667 0.00 0.00 35.33 3.51
2894 3074 3.682644 TTCCGGGGGCATCCTACGA 62.683 63.158 0.00 0.00 36.18 3.43
2973 3153 0.737019 CCAACGCCATTGCCACATTC 60.737 55.000 0.00 0.00 36.93 2.67
2981 3161 1.196581 CATTGCCACATTCGACGTCAA 59.803 47.619 17.16 9.46 0.00 3.18
2982 3162 0.584396 TTGCCACATTCGACGTCAAC 59.416 50.000 17.16 0.00 0.00 3.18
3151 3331 1.072965 CCCAGGCCATCAGTAAGATCC 59.927 57.143 5.01 0.00 33.72 3.36
3159 3339 5.240403 GGCCATCAGTAAGATCCTCATTTTC 59.760 44.000 0.00 0.00 33.72 2.29
3160 3340 5.824624 GCCATCAGTAAGATCCTCATTTTCA 59.175 40.000 0.00 0.00 33.72 2.69
3161 3341 6.489361 GCCATCAGTAAGATCCTCATTTTCAT 59.511 38.462 0.00 0.00 33.72 2.57
3162 3342 7.308469 GCCATCAGTAAGATCCTCATTTTCATC 60.308 40.741 0.00 0.00 33.72 2.92
3163 3343 7.718314 CCATCAGTAAGATCCTCATTTTCATCA 59.282 37.037 0.00 0.00 33.72 3.07
3164 3344 9.286170 CATCAGTAAGATCCTCATTTTCATCAT 57.714 33.333 0.00 0.00 33.72 2.45
3184 3374 4.581409 TCATCTACCACCATTTGATGCATG 59.419 41.667 2.46 0.00 35.74 4.06
3264 3458 4.588278 CGAAGCTTTTGAACTTTTCGAGT 58.412 39.130 0.00 0.00 39.60 4.18
3278 3472 4.903638 TTTCGAGTTCGTGTTCATGATC 57.096 40.909 0.00 0.00 40.80 2.92
3279 3473 3.850122 TCGAGTTCGTGTTCATGATCT 57.150 42.857 0.00 5.60 40.80 2.75
3280 3474 4.174411 TCGAGTTCGTGTTCATGATCTT 57.826 40.909 0.00 0.00 40.80 2.40
3281 3475 4.166523 TCGAGTTCGTGTTCATGATCTTC 58.833 43.478 0.00 0.00 40.80 2.87
3282 3476 3.304559 CGAGTTCGTGTTCATGATCTTCC 59.695 47.826 0.00 0.00 34.11 3.46
3283 3477 4.499183 GAGTTCGTGTTCATGATCTTCCT 58.501 43.478 0.00 0.00 0.00 3.36
3284 3478 5.651530 GAGTTCGTGTTCATGATCTTCCTA 58.348 41.667 0.00 0.00 0.00 2.94
3313 3507 3.425758 GCCGTGGCAAGAACATTTACTAC 60.426 47.826 5.89 0.00 41.49 2.73
3314 3508 4.000988 CCGTGGCAAGAACATTTACTACT 58.999 43.478 0.76 0.00 0.00 2.57
3315 3509 4.454504 CCGTGGCAAGAACATTTACTACTT 59.545 41.667 0.76 0.00 0.00 2.24
3316 3510 5.640357 CCGTGGCAAGAACATTTACTACTTA 59.360 40.000 0.76 0.00 0.00 2.24
3332 3527 6.927294 ACTACTTAGCATTTTGGTGATAGC 57.073 37.500 0.00 0.00 0.00 2.97
3452 3647 0.667487 ACAACAGCACCATCGTCGAG 60.667 55.000 0.00 0.00 0.00 4.04
3511 3706 3.005554 CAAACCCAGTGAGCTGTATCAG 58.994 50.000 0.00 0.00 41.02 2.90
3524 3719 7.603024 GTGAGCTGTATCAGGTAAGTTAAGTTT 59.397 37.037 0.00 0.00 42.53 2.66
3528 3723 8.947115 GCTGTATCAGGTAAGTTAAGTTTCATT 58.053 33.333 0.00 0.00 31.21 2.57
3552 3747 2.645838 ACAACAGCAGGAGTCACAAT 57.354 45.000 0.00 0.00 0.00 2.71
3559 3754 4.160252 ACAGCAGGAGTCACAATTTTTGTT 59.840 37.500 0.00 0.00 43.23 2.83
3560 3755 4.741676 CAGCAGGAGTCACAATTTTTGTTC 59.258 41.667 0.00 0.00 43.23 3.18
3561 3756 3.730715 GCAGGAGTCACAATTTTTGTTCG 59.269 43.478 0.00 0.00 43.23 3.95
3562 3757 4.290155 CAGGAGTCACAATTTTTGTTCGG 58.710 43.478 0.00 0.00 43.23 4.30
3563 3758 3.951680 AGGAGTCACAATTTTTGTTCGGT 59.048 39.130 0.00 0.00 43.23 4.69
3564 3759 4.401202 AGGAGTCACAATTTTTGTTCGGTT 59.599 37.500 0.00 0.00 43.23 4.44
3565 3760 5.591067 AGGAGTCACAATTTTTGTTCGGTTA 59.409 36.000 0.00 0.00 43.23 2.85
3568 3763 7.536281 GGAGTCACAATTTTTGTTCGGTTATAC 59.464 37.037 0.00 0.00 43.23 1.47
3570 3765 8.073768 AGTCACAATTTTTGTTCGGTTATACAG 58.926 33.333 0.00 0.00 43.23 2.74
3571 3766 7.858879 GTCACAATTTTTGTTCGGTTATACAGT 59.141 33.333 0.00 0.00 43.23 3.55
3572 3767 9.053840 TCACAATTTTTGTTCGGTTATACAGTA 57.946 29.630 0.00 0.00 43.23 2.74
3573 3768 9.834628 CACAATTTTTGTTCGGTTATACAGTAT 57.165 29.630 0.00 0.00 43.23 2.12
3622 3817 1.282157 GGCCCAACTCACCTTATCTGT 59.718 52.381 0.00 0.00 0.00 3.41
3653 3848 1.451387 CCGGGGATAGCACCAACAC 60.451 63.158 0.00 0.00 37.48 3.32
3699 3894 6.499106 TCTTCTCATATGTGCCCAATAAGA 57.501 37.500 1.90 2.03 0.00 2.10
3763 3958 2.290641 GTGAAGATCACGGTGCAAAACT 59.709 45.455 2.51 0.00 37.67 2.66
3828 4023 1.681264 CACCCCAACTTCAACAACCTC 59.319 52.381 0.00 0.00 0.00 3.85
3848 4043 4.323028 CCTCACCACTATCTTCAGCTTCAA 60.323 45.833 0.00 0.00 0.00 2.69
3926 4121 7.938140 TCTTCCCCTGAAAACTTATACATTG 57.062 36.000 0.00 0.00 0.00 2.82
3932 4127 6.586082 CCCTGAAAACTTATACATTGTGCAAC 59.414 38.462 0.00 0.00 37.35 4.17
3945 4187 7.332003 ACATTGTGCAACGTATATTTGTTTG 57.668 32.000 0.00 0.00 42.39 2.93
3970 4212 6.872020 GTGTTCCAGCTACTGACAAGTTATTA 59.128 38.462 0.00 0.00 37.88 0.98
3973 4215 7.241042 TCCAGCTACTGACAAGTTATTACTT 57.759 36.000 0.00 0.00 38.20 2.24
4154 4397 0.104304 ACTTCAACGGCGAGAACTGT 59.896 50.000 16.62 9.59 0.00 3.55
4351 4594 9.474920 GAGGTTTTCACATGATTATTGAACAAA 57.525 29.630 0.00 0.00 0.00 2.83
4352 4595 9.480053 AGGTTTTCACATGATTATTGAACAAAG 57.520 29.630 0.00 0.00 0.00 2.77
4353 4596 8.711457 GGTTTTCACATGATTATTGAACAAAGG 58.289 33.333 0.00 0.00 0.00 3.11
4354 4597 9.260002 GTTTTCACATGATTATTGAACAAAGGT 57.740 29.630 0.00 0.00 0.00 3.50
4355 4598 9.829507 TTTTCACATGATTATTGAACAAAGGTT 57.170 25.926 0.00 0.00 40.76 3.50
4356 4599 9.829507 TTTCACATGATTATTGAACAAAGGTTT 57.170 25.926 0.00 0.00 37.36 3.27
4370 4613 8.836413 TGAACAAAGGTTTAGAATGACAACTAG 58.164 33.333 0.00 0.00 37.36 2.57
4437 4730 5.371526 CTCTGGCTGATGGTTGTACATTAT 58.628 41.667 0.00 0.00 0.00 1.28
4515 4809 9.303537 CTAACTAAGGCAAGACAGATACTTAAC 57.696 37.037 0.00 0.00 0.00 2.01
4521 4815 5.932303 GGCAAGACAGATACTTAACTCAACA 59.068 40.000 0.00 0.00 0.00 3.33
4876 5437 6.587206 TGTGGATATGAAAAGCACATTCAA 57.413 33.333 3.45 0.00 39.98 2.69
4877 5438 6.389091 TGTGGATATGAAAAGCACATTCAAC 58.611 36.000 3.45 0.00 39.98 3.18
4881 5442 8.801299 TGGATATGAAAAGCACATTCAACTAAA 58.199 29.630 3.45 0.00 39.98 1.85
4893 5454 8.915654 GCACATTCAACTAAAAGAAAAGTATGG 58.084 33.333 0.00 0.00 0.00 2.74
4914 5475 3.028130 GTTTTTGGTCCCTCAAGTTCCA 58.972 45.455 0.00 0.00 0.00 3.53
4938 5499 5.045797 ACAAAAGTATAGACTTGGTCCCTCC 60.046 44.000 2.98 0.00 45.50 4.30
4939 5500 2.946785 AGTATAGACTTGGTCCCTCCG 58.053 52.381 0.00 0.00 39.52 4.63
4940 5501 1.962100 GTATAGACTTGGTCCCTCCGG 59.038 57.143 0.00 0.00 39.52 5.14
4942 5503 0.635009 TAGACTTGGTCCCTCCGGAT 59.365 55.000 3.57 0.00 41.40 4.18
4943 5504 0.252742 AGACTTGGTCCCTCCGGATT 60.253 55.000 3.57 0.00 41.40 3.01
4980 5541 4.229304 TGGTCCTTCAAGTCTCAAAACA 57.771 40.909 0.00 0.00 0.00 2.83
5014 5575 2.552315 TCCAAAACCAGATTTCGAGCAC 59.448 45.455 0.00 0.00 0.00 4.40
5022 5583 0.093026 GATTTCGAGCACGTTGACCG 59.907 55.000 2.86 0.00 44.03 4.79
5024 5585 2.632136 TTTCGAGCACGTTGACCGGT 62.632 55.000 6.92 6.92 42.24 5.28
5032 5593 0.108041 ACGTTGACCGGTGTTTGACT 60.108 50.000 14.63 0.00 42.24 3.41
5059 5620 0.036306 ACCAGGGTTGACCGATGAAC 59.964 55.000 5.79 0.00 46.96 3.18
5065 5626 3.071892 AGGGTTGACCGATGAACAGTAAA 59.928 43.478 0.00 0.00 46.96 2.01
5066 5627 4.007659 GGGTTGACCGATGAACAGTAAAT 58.992 43.478 0.00 0.00 36.71 1.40
5067 5628 4.457949 GGGTTGACCGATGAACAGTAAATT 59.542 41.667 0.00 0.00 36.71 1.82
5068 5629 5.048294 GGGTTGACCGATGAACAGTAAATTT 60.048 40.000 0.00 0.00 36.71 1.82
5069 5630 5.856455 GGTTGACCGATGAACAGTAAATTTG 59.144 40.000 0.00 0.00 0.00 2.32
5070 5631 6.293735 GGTTGACCGATGAACAGTAAATTTGA 60.294 38.462 0.00 0.00 0.00 2.69
5071 5632 6.869315 TGACCGATGAACAGTAAATTTGAA 57.131 33.333 0.00 0.00 0.00 2.69
5072 5633 7.265647 TGACCGATGAACAGTAAATTTGAAA 57.734 32.000 0.00 0.00 0.00 2.69
5073 5634 7.708051 TGACCGATGAACAGTAAATTTGAAAA 58.292 30.769 0.00 0.00 0.00 2.29
5074 5635 8.191446 TGACCGATGAACAGTAAATTTGAAAAA 58.809 29.630 0.00 0.00 0.00 1.94
5126 5705 3.519579 TGTGACAACCAACATGCTTTTG 58.480 40.909 0.00 0.00 0.00 2.44
5128 5707 3.551485 GTGACAACCAACATGCTTTTGAC 59.449 43.478 0.00 0.00 0.00 3.18
5139 5718 6.449635 ACATGCTTTTGACTTTACTGTTCA 57.550 33.333 0.00 0.00 0.00 3.18
5142 5721 5.747565 TGCTTTTGACTTTACTGTTCATCG 58.252 37.500 0.00 0.00 0.00 3.84
5151 5730 5.008316 ACTTTACTGTTCATCGTTCAAACCC 59.992 40.000 0.00 0.00 0.00 4.11
5152 5731 1.871039 ACTGTTCATCGTTCAAACCCG 59.129 47.619 0.00 0.00 0.00 5.28
5158 5737 1.810151 CATCGTTCAAACCCGGTCAAT 59.190 47.619 0.00 0.00 0.00 2.57
5190 5869 7.698163 AAATCTTGAGGGACCAAGTCTATAT 57.302 36.000 0.00 0.00 42.95 0.86
5207 5886 8.539117 AGTCTATATTTTTGGGGAATTTGAGG 57.461 34.615 0.00 0.00 0.00 3.86
5211 5890 2.319025 TTTGGGGAATTTGAGGGACC 57.681 50.000 0.00 0.00 0.00 4.46
5228 5907 6.609616 TGAGGGACCAAAAACATACTTTTCTT 59.390 34.615 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.816360 CGCGTGTCCATCCATGCAG 61.816 63.158 0.00 0.00 45.60 4.41
1 2 2.819154 CGCGTGTCCATCCATGCA 60.819 61.111 0.00 0.00 45.60 3.96
2 3 2.511373 TCGCGTGTCCATCCATGC 60.511 61.111 5.77 0.00 42.62 4.06
3 4 2.516589 CGTCGCGTGTCCATCCATG 61.517 63.158 5.77 0.00 0.00 3.66
4 5 2.202743 CGTCGCGTGTCCATCCAT 60.203 61.111 5.77 0.00 0.00 3.41
22 23 3.475774 CGAAAAGGCGGACGTCGG 61.476 66.667 17.98 17.98 39.69 4.79
23 24 2.713894 GACGAAAAGGCGGACGTCG 61.714 63.158 9.92 6.26 43.60 5.12
24 25 3.153609 GACGAAAAGGCGGACGTC 58.846 61.111 7.13 7.13 45.51 4.34
25 26 2.356673 GGACGAAAAGGCGGACGT 60.357 61.111 0.00 0.00 41.57 4.34
26 27 3.475774 CGGACGAAAAGGCGGACG 61.476 66.667 0.00 0.00 35.12 4.79
27 28 3.785499 GCGGACGAAAAGGCGGAC 61.785 66.667 0.00 0.00 35.12 4.79
28 29 3.811118 TTGCGGACGAAAAGGCGGA 62.811 57.895 0.00 0.00 35.12 5.54
29 30 3.350612 TTGCGGACGAAAAGGCGG 61.351 61.111 0.00 0.00 35.12 6.13
30 31 2.127383 GTTGCGGACGAAAAGGCG 60.127 61.111 0.00 0.00 37.29 5.52
31 32 1.792118 AAGGTTGCGGACGAAAAGGC 61.792 55.000 0.00 0.00 0.00 4.35
32 33 0.666374 AAAGGTTGCGGACGAAAAGG 59.334 50.000 0.00 0.00 0.00 3.11
33 34 2.032924 AGAAAAGGTTGCGGACGAAAAG 59.967 45.455 0.00 0.00 0.00 2.27
34 35 2.018515 AGAAAAGGTTGCGGACGAAAA 58.981 42.857 0.00 0.00 0.00 2.29
35 36 1.600485 GAGAAAAGGTTGCGGACGAAA 59.400 47.619 0.00 0.00 0.00 3.46
36 37 1.223187 GAGAAAAGGTTGCGGACGAA 58.777 50.000 0.00 0.00 0.00 3.85
37 38 0.601841 GGAGAAAAGGTTGCGGACGA 60.602 55.000 0.00 0.00 0.00 4.20
38 39 1.574702 GGGAGAAAAGGTTGCGGACG 61.575 60.000 0.00 0.00 0.00 4.79
39 40 1.574702 CGGGAGAAAAGGTTGCGGAC 61.575 60.000 0.00 0.00 0.00 4.79
40 41 1.302192 CGGGAGAAAAGGTTGCGGA 60.302 57.895 0.00 0.00 0.00 5.54
41 42 0.320946 TACGGGAGAAAAGGTTGCGG 60.321 55.000 0.00 0.00 0.00 5.69
42 43 1.463444 CTTACGGGAGAAAAGGTTGCG 59.537 52.381 0.00 0.00 0.00 4.85
43 44 1.810755 CCTTACGGGAGAAAAGGTTGC 59.189 52.381 0.00 0.00 39.78 4.17
44 45 3.412237 TCCTTACGGGAGAAAAGGTTG 57.588 47.619 0.00 0.00 42.80 3.77
45 46 4.442401 TTTCCTTACGGGAGAAAAGGTT 57.558 40.909 0.00 0.00 46.01 3.50
46 47 4.332828 CATTTCCTTACGGGAGAAAAGGT 58.667 43.478 0.00 0.00 46.01 3.50
47 48 3.694566 CCATTTCCTTACGGGAGAAAAGG 59.305 47.826 0.00 0.00 46.01 3.11
48 49 4.585879 TCCATTTCCTTACGGGAGAAAAG 58.414 43.478 0.00 0.00 46.01 2.27
49 50 4.585879 CTCCATTTCCTTACGGGAGAAAA 58.414 43.478 0.00 0.00 46.38 2.29
50 51 4.216411 CTCCATTTCCTTACGGGAGAAA 57.784 45.455 0.00 0.00 46.38 2.52
51 52 3.906720 CTCCATTTCCTTACGGGAGAA 57.093 47.619 0.00 0.00 46.38 2.87
53 54 2.481449 CGTCTCCATTTCCTTACGGGAG 60.481 54.545 0.00 0.00 46.01 4.30
54 55 1.479323 CGTCTCCATTTCCTTACGGGA 59.521 52.381 0.00 0.00 43.41 5.14
55 56 1.206371 ACGTCTCCATTTCCTTACGGG 59.794 52.381 0.00 0.00 34.81 5.28
56 57 2.667473 ACGTCTCCATTTCCTTACGG 57.333 50.000 0.00 0.00 34.81 4.02
57 58 5.443693 CGTTAAACGTCTCCATTTCCTTACG 60.444 44.000 0.00 0.00 36.74 3.18
58 59 5.850931 CGTTAAACGTCTCCATTTCCTTAC 58.149 41.667 0.00 0.00 36.74 2.34
82 83 1.732917 CGGAGCCTTGTGTTGCAAA 59.267 52.632 0.00 0.00 36.53 3.68
83 84 2.192861 CCGGAGCCTTGTGTTGCAA 61.193 57.895 0.00 0.00 35.50 4.08
84 85 2.594303 CCGGAGCCTTGTGTTGCA 60.594 61.111 0.00 0.00 0.00 4.08
85 86 2.193536 AACCGGAGCCTTGTGTTGC 61.194 57.895 9.46 0.00 0.00 4.17
86 87 0.817634 TCAACCGGAGCCTTGTGTTG 60.818 55.000 9.46 0.00 38.07 3.33
87 88 0.110486 ATCAACCGGAGCCTTGTGTT 59.890 50.000 9.46 0.00 0.00 3.32
88 89 0.981183 TATCAACCGGAGCCTTGTGT 59.019 50.000 9.46 0.00 0.00 3.72
89 90 1.369625 GTATCAACCGGAGCCTTGTG 58.630 55.000 9.46 0.00 0.00 3.33
90 91 0.108329 CGTATCAACCGGAGCCTTGT 60.108 55.000 9.46 0.00 0.00 3.16
91 92 2.677971 CGTATCAACCGGAGCCTTG 58.322 57.895 9.46 1.37 0.00 3.61
100 101 2.805807 GCGAACGGCCGTATCAACC 61.806 63.158 34.44 16.49 34.80 3.77
101 102 2.699212 GCGAACGGCCGTATCAAC 59.301 61.111 34.44 19.80 34.80 3.18
102 103 2.881827 CGCGAACGGCCGTATCAA 60.882 61.111 34.44 0.00 38.94 2.57
104 105 3.812166 TAGCGCGAACGGCCGTATC 62.812 63.158 34.44 27.02 40.57 2.24
105 106 3.818982 CTAGCGCGAACGGCCGTAT 62.819 63.158 34.44 21.71 40.57 3.06
106 107 4.541482 CTAGCGCGAACGGCCGTA 62.541 66.667 34.44 13.49 40.57 4.02
109 110 4.564116 TAGCTAGCGCGAACGGCC 62.564 66.667 12.10 0.00 42.32 6.13
110 111 3.025176 CTAGCTAGCGCGAACGGC 61.025 66.667 12.10 8.07 42.32 5.68
111 112 1.939785 CACTAGCTAGCGCGAACGG 60.940 63.158 20.91 0.00 42.32 4.44
112 113 1.939785 CCACTAGCTAGCGCGAACG 60.940 63.158 20.91 0.00 42.32 3.95
113 114 1.589196 CCCACTAGCTAGCGCGAAC 60.589 63.158 20.91 0.00 42.32 3.95
114 115 1.317431 TTCCCACTAGCTAGCGCGAA 61.317 55.000 20.91 12.30 42.32 4.70
115 116 1.317431 TTTCCCACTAGCTAGCGCGA 61.317 55.000 20.91 6.34 42.32 5.87
116 117 0.872021 CTTTCCCACTAGCTAGCGCG 60.872 60.000 20.91 0.00 42.32 6.86
117 118 0.175989 ACTTTCCCACTAGCTAGCGC 59.824 55.000 20.91 0.00 0.00 5.92
118 119 1.202428 GGACTTTCCCACTAGCTAGCG 60.202 57.143 20.91 11.39 0.00 4.26
119 120 2.112190 AGGACTTTCCCACTAGCTAGC 58.888 52.381 20.91 6.62 37.19 3.42
120 121 4.020128 ACAAAGGACTTTCCCACTAGCTAG 60.020 45.833 19.44 19.44 37.19 3.42
121 122 3.908103 ACAAAGGACTTTCCCACTAGCTA 59.092 43.478 0.00 0.00 37.19 3.32
122 123 2.711547 ACAAAGGACTTTCCCACTAGCT 59.288 45.455 0.00 0.00 37.19 3.32
123 124 2.814336 CACAAAGGACTTTCCCACTAGC 59.186 50.000 0.00 0.00 37.19 3.42
124 125 3.815401 CACACAAAGGACTTTCCCACTAG 59.185 47.826 0.00 0.00 37.19 2.57
125 126 3.434453 CCACACAAAGGACTTTCCCACTA 60.434 47.826 0.00 0.00 37.19 2.74
126 127 2.654863 CACACAAAGGACTTTCCCACT 58.345 47.619 0.00 0.00 37.19 4.00
127 128 1.681264 CCACACAAAGGACTTTCCCAC 59.319 52.381 0.00 0.00 37.19 4.61
128 129 1.566703 TCCACACAAAGGACTTTCCCA 59.433 47.619 0.00 0.00 37.19 4.37
129 130 2.358322 TCCACACAAAGGACTTTCCC 57.642 50.000 0.00 0.00 37.19 3.97
130 131 3.951680 TCTTTCCACACAAAGGACTTTCC 59.048 43.478 0.00 0.00 34.58 3.13
131 132 4.640647 AGTCTTTCCACACAAAGGACTTTC 59.359 41.667 0.00 0.00 34.58 2.62
132 133 4.399303 CAGTCTTTCCACACAAAGGACTTT 59.601 41.667 0.00 0.00 34.58 2.66
133 134 3.947834 CAGTCTTTCCACACAAAGGACTT 59.052 43.478 0.00 0.00 34.58 3.01
134 135 3.545703 CAGTCTTTCCACACAAAGGACT 58.454 45.455 0.00 0.00 34.58 3.85
135 136 2.033424 GCAGTCTTTCCACACAAAGGAC 59.967 50.000 0.00 0.00 34.58 3.85
136 137 2.297701 GCAGTCTTTCCACACAAAGGA 58.702 47.619 0.00 0.00 34.58 3.36
137 138 1.002468 CGCAGTCTTTCCACACAAAGG 60.002 52.381 0.00 0.00 34.58 3.11
138 139 1.597937 GCGCAGTCTTTCCACACAAAG 60.598 52.381 0.30 0.00 35.06 2.77
139 140 0.380378 GCGCAGTCTTTCCACACAAA 59.620 50.000 0.30 0.00 0.00 2.83
140 141 0.746204 TGCGCAGTCTTTCCACACAA 60.746 50.000 5.66 0.00 0.00 3.33
141 142 1.153269 TGCGCAGTCTTTCCACACA 60.153 52.632 5.66 0.00 0.00 3.72
142 143 1.279840 GTGCGCAGTCTTTCCACAC 59.720 57.895 12.22 0.00 0.00 3.82
143 144 1.153269 TGTGCGCAGTCTTTCCACA 60.153 52.632 12.22 0.00 34.38 4.17
144 145 1.279840 GTGTGCGCAGTCTTTCCAC 59.720 57.895 12.22 10.15 0.00 4.02
145 146 0.746204 TTGTGTGCGCAGTCTTTCCA 60.746 50.000 12.22 0.00 0.00 3.53
153 154 1.761244 TTCGTGTCTTGTGTGCGCAG 61.761 55.000 12.22 0.00 0.00 5.18
162 163 3.951979 AGTTCAGCTTTTCGTGTCTTG 57.048 42.857 0.00 0.00 0.00 3.02
180 181 5.128827 TGCTTCCAGACCGATATAAGAAAGT 59.871 40.000 0.00 0.00 0.00 2.66
185 186 5.237344 CCTTTTGCTTCCAGACCGATATAAG 59.763 44.000 0.00 0.00 0.00 1.73
189 190 2.569853 TCCTTTTGCTTCCAGACCGATA 59.430 45.455 0.00 0.00 0.00 2.92
190 191 1.351017 TCCTTTTGCTTCCAGACCGAT 59.649 47.619 0.00 0.00 0.00 4.18
191 192 0.762418 TCCTTTTGCTTCCAGACCGA 59.238 50.000 0.00 0.00 0.00 4.69
192 193 1.160137 CTCCTTTTGCTTCCAGACCG 58.840 55.000 0.00 0.00 0.00 4.79
193 194 0.884514 GCTCCTTTTGCTTCCAGACC 59.115 55.000 0.00 0.00 0.00 3.85
194 195 0.884514 GGCTCCTTTTGCTTCCAGAC 59.115 55.000 0.00 0.00 0.00 3.51
196 197 1.172175 GAGGCTCCTTTTGCTTCCAG 58.828 55.000 2.15 0.00 31.54 3.86
197 198 0.606401 CGAGGCTCCTTTTGCTTCCA 60.606 55.000 9.32 0.00 33.74 3.53
198 199 1.308783 CCGAGGCTCCTTTTGCTTCC 61.309 60.000 9.32 0.00 33.74 3.46
199 200 1.308783 CCCGAGGCTCCTTTTGCTTC 61.309 60.000 9.32 0.00 33.92 3.86
200 201 1.303643 CCCGAGGCTCCTTTTGCTT 60.304 57.895 9.32 0.00 0.00 3.91
202 203 1.587043 GAACCCGAGGCTCCTTTTGC 61.587 60.000 9.32 0.00 0.00 3.68
203 204 1.298859 CGAACCCGAGGCTCCTTTTG 61.299 60.000 9.32 0.00 38.22 2.44
210 211 2.363795 TGATCCGAACCCGAGGCT 60.364 61.111 0.00 0.00 38.22 4.58
211 212 2.107141 CTGATCCGAACCCGAGGC 59.893 66.667 0.00 0.00 38.22 4.70
215 216 2.278857 CTCGCTGATCCGAACCCG 60.279 66.667 0.00 0.00 36.72 5.28
234 235 6.007485 TCATCAGTCCTCATCACTAGTAGT 57.993 41.667 0.00 0.00 0.00 2.73
235 236 6.016360 CCTTCATCAGTCCTCATCACTAGTAG 60.016 46.154 0.00 0.00 0.00 2.57
236 237 5.830457 CCTTCATCAGTCCTCATCACTAGTA 59.170 44.000 0.00 0.00 0.00 1.82
243 244 8.688747 ATTTTTATCCTTCATCAGTCCTCATC 57.311 34.615 0.00 0.00 0.00 2.92
260 261 8.801715 ATTAATGTGCGTGATGGATTTTTATC 57.198 30.769 0.00 0.00 0.00 1.75
262 263 7.490725 CCAATTAATGTGCGTGATGGATTTTTA 59.509 33.333 0.00 0.00 0.00 1.52
264 265 5.811613 CCAATTAATGTGCGTGATGGATTTT 59.188 36.000 0.00 0.00 0.00 1.82
286 287 2.668632 GTGAAGCCGGATGTCCCA 59.331 61.111 5.05 0.00 34.14 4.37
287 288 2.124695 GGTGAAGCCGGATGTCCC 60.125 66.667 5.05 0.00 0.00 4.46
361 365 1.269257 GCCTTTGCTTGGTTCACTGAC 60.269 52.381 0.00 0.00 33.53 3.51
421 426 1.089920 CTTCCCTCCATTTCTGTGCG 58.910 55.000 0.00 0.00 0.00 5.34
422 427 1.004745 TCCTTCCCTCCATTTCTGTGC 59.995 52.381 0.00 0.00 0.00 4.57
426 431 2.721906 TGGTTTCCTTCCCTCCATTTCT 59.278 45.455 0.00 0.00 0.00 2.52
494 499 4.579454 AAGTACTGTAGCACTTTCGTGA 57.421 40.909 0.00 0.00 43.97 4.35
498 503 9.553418 GTAACTAGTAAGTACTGTAGCACTTTC 57.447 37.037 0.00 0.00 37.10 2.62
502 507 7.201688 GGGAGTAACTAGTAAGTACTGTAGCAC 60.202 44.444 9.89 1.19 37.10 4.40
503 508 6.825721 GGGAGTAACTAGTAAGTACTGTAGCA 59.174 42.308 9.89 0.00 37.10 3.49
505 510 8.485392 AGAGGGAGTAACTAGTAAGTACTGTAG 58.515 40.741 9.89 0.87 37.10 2.74
507 512 7.111466 CAGAGGGAGTAACTAGTAAGTACTGT 58.889 42.308 9.89 0.00 37.10 3.55
508 513 7.111466 ACAGAGGGAGTAACTAGTAAGTACTG 58.889 42.308 9.89 8.37 37.10 2.74
510 515 7.066887 GGAACAGAGGGAGTAACTAGTAAGTAC 59.933 44.444 0.00 0.00 33.75 2.73
513 518 6.189133 AGGAACAGAGGGAGTAACTAGTAAG 58.811 44.000 0.00 0.00 0.00 2.34
516 521 4.678538 AGGAACAGAGGGAGTAACTAGT 57.321 45.455 0.00 0.00 0.00 2.57
517 522 6.189133 AGTTAGGAACAGAGGGAGTAACTAG 58.811 44.000 0.00 0.00 29.61 2.57
518 523 6.150034 AGTTAGGAACAGAGGGAGTAACTA 57.850 41.667 0.00 0.00 29.61 2.24
520 525 6.847421 TTAGTTAGGAACAGAGGGAGTAAC 57.153 41.667 0.00 0.00 0.00 2.50
521 526 7.456902 ACAATTAGTTAGGAACAGAGGGAGTAA 59.543 37.037 0.00 0.00 0.00 2.24
524 529 6.155393 AGACAATTAGTTAGGAACAGAGGGAG 59.845 42.308 0.00 0.00 0.00 4.30
525 530 6.023603 AGACAATTAGTTAGGAACAGAGGGA 58.976 40.000 0.00 0.00 0.00 4.20
526 531 6.301169 AGACAATTAGTTAGGAACAGAGGG 57.699 41.667 0.00 0.00 0.00 4.30
527 532 8.097662 AGAAAGACAATTAGTTAGGAACAGAGG 58.902 37.037 0.00 0.00 0.00 3.69
544 549 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
545 550 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
546 551 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
548 553 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
554 559 9.737427 CGTATATAGTCACTTGTTGAAATCTCT 57.263 33.333 0.00 0.00 35.39 3.10
555 560 8.969267 CCGTATATAGTCACTTGTTGAAATCTC 58.031 37.037 0.00 0.00 35.39 2.75
556 561 8.692710 TCCGTATATAGTCACTTGTTGAAATCT 58.307 33.333 0.00 0.00 35.39 2.40
557 562 8.867112 TCCGTATATAGTCACTTGTTGAAATC 57.133 34.615 0.00 0.00 35.39 2.17
558 563 7.438459 GCTCCGTATATAGTCACTTGTTGAAAT 59.562 37.037 0.00 0.00 35.39 2.17
559 564 6.755141 GCTCCGTATATAGTCACTTGTTGAAA 59.245 38.462 0.00 0.00 35.39 2.69
560 565 6.127563 TGCTCCGTATATAGTCACTTGTTGAA 60.128 38.462 0.00 0.00 35.39 2.69
561 566 5.358725 TGCTCCGTATATAGTCACTTGTTGA 59.641 40.000 0.00 0.00 0.00 3.18
562 567 5.588240 TGCTCCGTATATAGTCACTTGTTG 58.412 41.667 0.00 0.00 0.00 3.33
564 569 5.847111 TTGCTCCGTATATAGTCACTTGT 57.153 39.130 0.00 0.00 0.00 3.16
565 570 7.438160 TCATTTTGCTCCGTATATAGTCACTTG 59.562 37.037 0.00 0.00 0.00 3.16
566 571 7.497595 TCATTTTGCTCCGTATATAGTCACTT 58.502 34.615 0.00 0.00 0.00 3.16
568 573 6.924060 ACTCATTTTGCTCCGTATATAGTCAC 59.076 38.462 0.00 0.00 0.00 3.67
571 576 7.050970 TCACTCATTTTGCTCCGTATATAGT 57.949 36.000 0.00 0.00 0.00 2.12
572 577 7.946655 TTCACTCATTTTGCTCCGTATATAG 57.053 36.000 0.00 0.00 0.00 1.31
573 578 8.367911 AGATTCACTCATTTTGCTCCGTATATA 58.632 33.333 0.00 0.00 0.00 0.86
574 579 7.220030 AGATTCACTCATTTTGCTCCGTATAT 58.780 34.615 0.00 0.00 0.00 0.86
575 580 6.582636 AGATTCACTCATTTTGCTCCGTATA 58.417 36.000 0.00 0.00 0.00 1.47
577 582 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
579 584 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
581 586 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
592 597 8.764524 AGACATGTTTTAGAGTGTAGATTCAC 57.235 34.615 0.00 0.00 38.46 3.18
609 614 9.639601 CAACATACGGATATACATAGACATGTT 57.360 33.333 0.00 0.00 42.98 2.71
613 618 9.511272 ACTACAACATACGGATATACATAGACA 57.489 33.333 0.00 0.00 0.00 3.41
614 619 9.985318 GACTACAACATACGGATATACATAGAC 57.015 37.037 0.00 0.00 0.00 2.59
623 628 9.346005 TCTCAAATAGACTACAACATACGGATA 57.654 33.333 0.00 0.00 0.00 2.59
624 629 8.234136 TCTCAAATAGACTACAACATACGGAT 57.766 34.615 0.00 0.00 0.00 4.18
625 630 7.634671 TCTCAAATAGACTACAACATACGGA 57.365 36.000 0.00 0.00 0.00 4.69
626 631 7.382488 CCATCTCAAATAGACTACAACATACGG 59.618 40.741 0.00 0.00 36.93 4.02
627 632 7.096023 GCCATCTCAAATAGACTACAACATACG 60.096 40.741 0.00 0.00 36.93 3.06
628 633 7.928706 AGCCATCTCAAATAGACTACAACATAC 59.071 37.037 0.00 0.00 36.93 2.39
629 634 8.023021 AGCCATCTCAAATAGACTACAACATA 57.977 34.615 0.00 0.00 36.93 2.29
630 635 6.893583 AGCCATCTCAAATAGACTACAACAT 58.106 36.000 0.00 0.00 36.93 2.71
632 637 7.717568 TCTAGCCATCTCAAATAGACTACAAC 58.282 38.462 0.00 0.00 36.93 3.32
633 638 7.898014 TCTAGCCATCTCAAATAGACTACAA 57.102 36.000 0.00 0.00 36.93 2.41
634 639 7.898014 TTCTAGCCATCTCAAATAGACTACA 57.102 36.000 0.00 0.00 36.93 2.74
635 640 8.634444 TCTTTCTAGCCATCTCAAATAGACTAC 58.366 37.037 0.00 0.00 36.93 2.73
637 642 7.124901 TGTCTTTCTAGCCATCTCAAATAGACT 59.875 37.037 0.00 0.00 36.93 3.24
638 643 7.268586 TGTCTTTCTAGCCATCTCAAATAGAC 58.731 38.462 0.00 0.00 36.93 2.59
639 644 7.423844 TGTCTTTCTAGCCATCTCAAATAGA 57.576 36.000 0.00 0.00 39.02 1.98
640 645 8.674263 ATTGTCTTTCTAGCCATCTCAAATAG 57.326 34.615 0.00 0.00 0.00 1.73
644 649 9.466497 AAATAATTGTCTTTCTAGCCATCTCAA 57.534 29.630 0.00 0.00 0.00 3.02
647 652 8.055181 TCCAAATAATTGTCTTTCTAGCCATCT 58.945 33.333 0.00 0.00 34.60 2.90
648 653 8.225603 TCCAAATAATTGTCTTTCTAGCCATC 57.774 34.615 0.00 0.00 34.60 3.51
649 654 8.593945 TTCCAAATAATTGTCTTTCTAGCCAT 57.406 30.769 0.00 0.00 34.60 4.40
650 655 8.303876 GTTTCCAAATAATTGTCTTTCTAGCCA 58.696 33.333 0.00 0.00 34.60 4.75
651 656 7.484959 CGTTTCCAAATAATTGTCTTTCTAGCC 59.515 37.037 0.00 0.00 34.60 3.93
652 657 7.484959 CCGTTTCCAAATAATTGTCTTTCTAGC 59.515 37.037 0.00 0.00 34.60 3.42
658 663 5.185056 CCCTCCGTTTCCAAATAATTGTCTT 59.815 40.000 0.00 0.00 34.60 3.01
659 664 4.705023 CCCTCCGTTTCCAAATAATTGTCT 59.295 41.667 0.00 0.00 34.60 3.41
660 665 4.703093 TCCCTCCGTTTCCAAATAATTGTC 59.297 41.667 0.00 0.00 34.60 3.18
661 666 4.668636 TCCCTCCGTTTCCAAATAATTGT 58.331 39.130 0.00 0.00 34.60 2.71
662 667 4.705023 ACTCCCTCCGTTTCCAAATAATTG 59.295 41.667 0.00 0.00 36.25 2.32
663 668 4.705023 CACTCCCTCCGTTTCCAAATAATT 59.295 41.667 0.00 0.00 0.00 1.40
664 669 4.270008 CACTCCCTCCGTTTCCAAATAAT 58.730 43.478 0.00 0.00 0.00 1.28
666 671 2.617021 GCACTCCCTCCGTTTCCAAATA 60.617 50.000 0.00 0.00 0.00 1.40
667 672 1.886655 GCACTCCCTCCGTTTCCAAAT 60.887 52.381 0.00 0.00 0.00 2.32
668 673 0.536460 GCACTCCCTCCGTTTCCAAA 60.536 55.000 0.00 0.00 0.00 3.28
669 674 1.072505 GCACTCCCTCCGTTTCCAA 59.927 57.895 0.00 0.00 0.00 3.53
670 675 0.543410 TAGCACTCCCTCCGTTTCCA 60.543 55.000 0.00 0.00 0.00 3.53
672 677 0.108281 GGTAGCACTCCCTCCGTTTC 60.108 60.000 0.00 0.00 0.00 2.78
673 678 1.551019 GGGTAGCACTCCCTCCGTTT 61.551 60.000 0.00 0.00 41.58 3.60
674 679 1.988406 GGGTAGCACTCCCTCCGTT 60.988 63.158 0.00 0.00 41.58 4.44
675 680 2.363925 GGGTAGCACTCCCTCCGT 60.364 66.667 0.00 0.00 41.58 4.69
676 681 2.363795 TGGGTAGCACTCCCTCCG 60.364 66.667 11.19 0.00 44.84 4.63
677 682 1.306226 ACTGGGTAGCACTCCCTCC 60.306 63.158 11.19 0.00 44.84 4.30
678 683 1.617947 CCACTGGGTAGCACTCCCTC 61.618 65.000 11.19 0.00 44.84 4.30
679 684 1.613630 CCACTGGGTAGCACTCCCT 60.614 63.158 11.19 0.00 44.84 4.20
680 685 1.198759 TTCCACTGGGTAGCACTCCC 61.199 60.000 0.00 4.26 44.81 4.30
681 686 0.912486 ATTCCACTGGGTAGCACTCC 59.088 55.000 0.00 0.00 34.93 3.85
682 687 2.789409 AATTCCACTGGGTAGCACTC 57.211 50.000 0.00 0.00 34.93 3.51
683 688 2.290960 GGAAATTCCACTGGGTAGCACT 60.291 50.000 7.23 0.00 36.28 4.40
684 689 2.092323 GGAAATTCCACTGGGTAGCAC 58.908 52.381 7.23 0.00 36.28 4.40
685 690 1.707989 TGGAAATTCCACTGGGTAGCA 59.292 47.619 11.23 0.00 42.67 3.49
686 691 2.507407 TGGAAATTCCACTGGGTAGC 57.493 50.000 11.23 0.00 42.67 3.58
698 703 4.570369 CGGCTTGTTTGTTTCTTGGAAATT 59.430 37.500 0.00 0.00 0.00 1.82
723 739 1.826340 TTGCTTCCGTGAGCCAGCTA 61.826 55.000 5.00 0.00 42.01 3.32
724 740 3.182590 TTGCTTCCGTGAGCCAGCT 62.183 57.895 0.00 0.00 42.01 4.24
726 742 2.671177 CGTTGCTTCCGTGAGCCAG 61.671 63.158 5.00 0.00 42.01 4.85
727 743 2.664851 CGTTGCTTCCGTGAGCCA 60.665 61.111 5.00 0.00 42.01 4.75
728 744 3.423154 CCGTTGCTTCCGTGAGCC 61.423 66.667 5.00 0.00 42.01 4.70
731 747 0.882927 CTTTCCCGTTGCTTCCGTGA 60.883 55.000 0.00 0.00 0.00 4.35
735 751 2.341452 AAGCTTTCCCGTTGCTTCC 58.659 52.632 0.00 0.00 42.52 3.46
738 754 4.081050 GGAAGCTTTCCCGTTGCT 57.919 55.556 0.00 0.00 44.30 3.91
774 814 1.288419 CGAAGCCGTGTACATGCACA 61.288 55.000 18.84 0.00 39.19 4.57
775 815 1.419922 CGAAGCCGTGTACATGCAC 59.580 57.895 18.84 9.82 36.12 4.57
776 816 3.869187 CGAAGCCGTGTACATGCA 58.131 55.556 18.84 0.00 0.00 3.96
791 843 0.940833 TCAGATTTGTTGTTGCGCGA 59.059 45.000 12.10 0.00 0.00 5.87
818 870 2.314647 GCGTGGCGTGTGTGTATGT 61.315 57.895 0.00 0.00 0.00 2.29
819 871 2.474266 GCGTGGCGTGTGTGTATG 59.526 61.111 0.00 0.00 0.00 2.39
820 872 2.740826 GGCGTGGCGTGTGTGTAT 60.741 61.111 0.00 0.00 0.00 2.29
821 873 4.222847 TGGCGTGGCGTGTGTGTA 62.223 61.111 0.00 0.00 0.00 2.90
840 892 1.358759 CGAGGTTTGTGTTGTGCCC 59.641 57.895 0.00 0.00 0.00 5.36
842 894 0.317020 GAGCGAGGTTTGTGTTGTGC 60.317 55.000 0.00 0.00 0.00 4.57
843 895 0.042188 CGAGCGAGGTTTGTGTTGTG 60.042 55.000 0.00 0.00 0.00 3.33
844 896 1.772063 GCGAGCGAGGTTTGTGTTGT 61.772 55.000 0.00 0.00 0.00 3.32
845 897 1.082756 GCGAGCGAGGTTTGTGTTG 60.083 57.895 0.00 0.00 0.00 3.33
846 898 1.222115 GAGCGAGCGAGGTTTGTGTT 61.222 55.000 0.00 0.00 0.00 3.32
847 899 1.664965 GAGCGAGCGAGGTTTGTGT 60.665 57.895 0.00 0.00 0.00 3.72
852 904 3.453679 GGGAGAGCGAGCGAGGTT 61.454 66.667 0.00 0.00 0.00 3.50
853 905 4.434354 AGGGAGAGCGAGCGAGGT 62.434 66.667 0.00 0.00 0.00 3.85
855 907 2.826287 TGAGGGAGAGCGAGCGAG 60.826 66.667 0.00 0.00 0.00 5.03
856 908 3.134792 GTGAGGGAGAGCGAGCGA 61.135 66.667 0.00 0.00 0.00 4.93
857 909 3.119709 GAGTGAGGGAGAGCGAGCG 62.120 68.421 0.00 0.00 0.00 5.03
858 910 1.724582 GAGAGTGAGGGAGAGCGAGC 61.725 65.000 0.00 0.00 0.00 5.03
1026 1104 2.770048 CTCAGGGGCGGGGAAGAT 60.770 66.667 0.00 0.00 0.00 2.40
1032 1110 3.866582 GATGTCCTCAGGGGCGGG 61.867 72.222 0.00 0.00 40.80 6.13
1033 1111 3.866582 GGATGTCCTCAGGGGCGG 61.867 72.222 0.00 0.00 40.80 6.13
1034 1112 1.987807 AATGGATGTCCTCAGGGGCG 61.988 60.000 0.00 0.00 40.80 6.13
1035 1113 0.466922 CAATGGATGTCCTCAGGGGC 60.467 60.000 0.00 0.00 37.81 5.80
1036 1114 0.466922 GCAATGGATGTCCTCAGGGG 60.467 60.000 0.00 0.00 36.82 4.79
1037 1115 0.816825 CGCAATGGATGTCCTCAGGG 60.817 60.000 0.00 0.00 36.82 4.45
1047 1125 1.525535 GAGGAGCAGCGCAATGGAT 60.526 57.895 11.47 0.00 0.00 3.41
1159 1241 0.314578 GCGCATGAATCGACGAACAG 60.315 55.000 0.30 1.93 0.00 3.16
1196 1278 4.181010 CCCACATCTCGCCCCCAG 62.181 72.222 0.00 0.00 0.00 4.45
1231 1314 1.420138 AGTCACCCAAATCTCCGTGTT 59.580 47.619 0.00 0.00 0.00 3.32
1232 1315 1.056660 AGTCACCCAAATCTCCGTGT 58.943 50.000 0.00 0.00 0.00 4.49
1233 1316 1.442769 CAGTCACCCAAATCTCCGTG 58.557 55.000 0.00 0.00 0.00 4.94
1248 1331 1.627297 CCCCTCCCTTAGCACCAGTC 61.627 65.000 0.00 0.00 0.00 3.51
1256 1339 1.353394 AAATCCGGCCCCTCCCTTAG 61.353 60.000 0.00 0.00 0.00 2.18
1339 1429 2.534939 CGAAAATCGCGTCTTGGTCATC 60.535 50.000 5.77 0.00 31.14 2.92
1360 1450 2.186826 CGGAAATGCATCCCCGGAC 61.187 63.158 24.05 2.67 38.42 4.79
1377 1467 0.252197 CCCTAAACAAGGTCCTCCCG 59.748 60.000 0.00 0.00 44.90 5.14
1386 1476 4.093556 GTGATTTCTCGCTCCCTAAACAAG 59.906 45.833 0.00 0.00 0.00 3.16
1393 1483 1.745141 GCATGTGATTTCTCGCTCCCT 60.745 52.381 0.00 0.00 32.91 4.20
1446 1588 4.645667 TGACGTGAAAACAGATCATTCG 57.354 40.909 0.00 0.00 0.00 3.34
1475 1617 3.131223 TCTCAGGCTACGATGAAAGAAGG 59.869 47.826 0.00 0.00 0.00 3.46
1490 1632 2.559440 CTGTAATTCAGGCTCTCAGGC 58.441 52.381 0.00 0.00 40.23 4.85
1501 1643 7.275779 GCTACGATGAAAGAAGACTGTAATTCA 59.724 37.037 7.67 0.00 0.00 2.57
1502 1644 7.254151 GGCTACGATGAAAGAAGACTGTAATTC 60.254 40.741 0.00 0.00 0.00 2.17
1503 1645 6.535508 GGCTACGATGAAAGAAGACTGTAATT 59.464 38.462 0.00 0.00 0.00 1.40
1504 1646 6.043411 GGCTACGATGAAAGAAGACTGTAAT 58.957 40.000 0.00 0.00 0.00 1.89
1505 1647 5.185249 AGGCTACGATGAAAGAAGACTGTAA 59.815 40.000 0.00 0.00 0.00 2.41
1506 1648 4.705507 AGGCTACGATGAAAGAAGACTGTA 59.294 41.667 0.00 0.00 0.00 2.74
1507 1649 3.511934 AGGCTACGATGAAAGAAGACTGT 59.488 43.478 0.00 0.00 0.00 3.55
1508 1650 3.862267 CAGGCTACGATGAAAGAAGACTG 59.138 47.826 0.00 0.00 37.00 3.51
1509 1651 3.764434 TCAGGCTACGATGAAAGAAGACT 59.236 43.478 0.00 0.00 0.00 3.24
1510 1652 4.109050 CTCAGGCTACGATGAAAGAAGAC 58.891 47.826 0.00 0.00 0.00 3.01
1511 1653 4.017126 TCTCAGGCTACGATGAAAGAAGA 58.983 43.478 0.00 0.00 0.00 2.87
1512 1654 4.358851 CTCTCAGGCTACGATGAAAGAAG 58.641 47.826 0.00 0.00 0.00 2.85
1513 1655 3.429547 GCTCTCAGGCTACGATGAAAGAA 60.430 47.826 0.00 0.00 0.00 2.52
1514 1656 2.099921 GCTCTCAGGCTACGATGAAAGA 59.900 50.000 0.00 0.00 0.00 2.52
1515 1657 2.468831 GCTCTCAGGCTACGATGAAAG 58.531 52.381 0.00 0.00 0.00 2.62
1516 1658 1.137086 GGCTCTCAGGCTACGATGAAA 59.863 52.381 0.00 0.00 37.85 2.69
1517 1659 0.747255 GGCTCTCAGGCTACGATGAA 59.253 55.000 0.00 0.00 37.85 2.57
1518 1660 2.420138 GGCTCTCAGGCTACGATGA 58.580 57.895 0.00 0.00 37.85 2.92
1602 1744 3.084786 AGGCCTAGAAGTGTTGCAATTC 58.915 45.455 1.29 2.40 38.50 2.17
1607 1749 2.079925 CAAGAGGCCTAGAAGTGTTGC 58.920 52.381 4.42 0.00 0.00 4.17
1734 1888 9.407380 TCTGTTAAGTGCATTTGGTCATAATAT 57.593 29.630 4.47 0.00 0.00 1.28
1747 1901 3.754965 TCAGCCTTTCTGTTAAGTGCAT 58.245 40.909 0.00 0.00 43.32 3.96
1760 1914 1.900498 GTGCAGCCACTCAGCCTTT 60.900 57.895 0.00 0.00 38.93 3.11
1764 1918 0.392193 ATAGTGTGCAGCCACTCAGC 60.392 55.000 16.97 0.00 44.36 4.26
1773 1927 5.237127 TGAGTTGAAACAGAATAGTGTGCAG 59.763 40.000 0.00 0.00 0.00 4.41
1816 1970 6.361481 GTCACAATTTTATCATGATGCCATCG 59.639 38.462 18.72 5.56 0.00 3.84
2041 2200 8.462016 GGTAGCAGACATTTATCAAGTTCAAAT 58.538 33.333 0.00 0.00 0.00 2.32
2108 2269 3.834489 TCTGCAAAATGCCAAGGAAAA 57.166 38.095 0.00 0.00 44.23 2.29
2135 2296 1.368641 CAACCGGATCAAGCGAATCA 58.631 50.000 9.46 0.00 0.00 2.57
2195 2356 4.202367 GGCTTACTTACCATGTAGCCATCT 60.202 45.833 0.00 0.00 35.87 2.90
2205 2366 4.532521 AGACTGAACTGGCTTACTTACCAT 59.467 41.667 0.00 0.00 34.82 3.55
2282 2443 2.832129 ACGTAGGAATGGAGAAAGCTGA 59.168 45.455 0.00 0.00 0.00 4.26
2298 2459 5.523552 TCATGGAATTTGCTCATGTACGTAG 59.476 40.000 0.00 0.00 39.25 3.51
2299 2460 5.423886 TCATGGAATTTGCTCATGTACGTA 58.576 37.500 0.00 0.00 39.25 3.57
2300 2461 4.260985 TCATGGAATTTGCTCATGTACGT 58.739 39.130 0.00 0.00 39.25 3.57
2301 2462 4.880886 TCATGGAATTTGCTCATGTACG 57.119 40.909 0.00 0.00 39.25 3.67
2302 2463 7.814107 TCTTTTTCATGGAATTTGCTCATGTAC 59.186 33.333 0.00 0.00 39.25 2.90
2417 2582 2.158696 AGGGAAGCCAGATATTCTGTGC 60.159 50.000 4.00 6.78 42.80 4.57
2425 2590 3.928754 ACACTATCAGGGAAGCCAGATA 58.071 45.455 0.00 0.00 0.00 1.98
2428 2593 3.356529 AAACACTATCAGGGAAGCCAG 57.643 47.619 0.00 0.00 0.00 4.85
2477 2647 8.680903 ACTTTTGATTGTTATAAGATCAGCCAG 58.319 33.333 9.96 9.73 32.00 4.85
2532 2702 5.248870 AGAAACCCTAATTAAATGCTGCG 57.751 39.130 0.00 0.00 0.00 5.18
2540 2710 9.689501 AAATACATCCGAAGAAACCCTAATTAA 57.310 29.630 0.00 0.00 0.00 1.40
2541 2711 9.116067 CAAATACATCCGAAGAAACCCTAATTA 57.884 33.333 0.00 0.00 0.00 1.40
2542 2712 7.416326 GCAAATACATCCGAAGAAACCCTAATT 60.416 37.037 0.00 0.00 0.00 1.40
2543 2713 6.039382 GCAAATACATCCGAAGAAACCCTAAT 59.961 38.462 0.00 0.00 0.00 1.73
2557 2727 7.645340 CAGCTTATAAGTTGTGCAAATACATCC 59.355 37.037 18.33 0.00 33.24 3.51
2625 2802 8.597662 ATTTGTCATCAGTTTGGAAAAGATTG 57.402 30.769 0.00 0.00 0.00 2.67
2763 2943 2.029918 GCCGGCCATTTTCCAGATTATC 60.030 50.000 18.11 0.00 0.00 1.75
2887 3067 1.255667 GGGGTCTGCTTGTCGTAGGA 61.256 60.000 0.00 0.00 0.00 2.94
2893 3073 0.954452 CAGTTTGGGGTCTGCTTGTC 59.046 55.000 0.00 0.00 0.00 3.18
2894 3074 3.116091 CAGTTTGGGGTCTGCTTGT 57.884 52.632 0.00 0.00 0.00 3.16
3027 3207 1.644509 GGGCCTTGAGGGTGAAATTT 58.355 50.000 0.84 0.00 37.43 1.82
3151 3331 7.578310 AATGGTGGTAGATGATGAAAATGAG 57.422 36.000 0.00 0.00 0.00 2.90
3159 3339 4.581409 TGCATCAAATGGTGGTAGATGATG 59.419 41.667 8.73 8.73 44.24 3.07
3160 3340 4.795469 TGCATCAAATGGTGGTAGATGAT 58.205 39.130 0.00 0.00 38.62 2.45
3161 3341 4.233632 TGCATCAAATGGTGGTAGATGA 57.766 40.909 0.00 0.00 38.62 2.92
3162 3342 4.261867 CCATGCATCAAATGGTGGTAGATG 60.262 45.833 0.00 0.00 39.87 2.90
3163 3343 3.893200 CCATGCATCAAATGGTGGTAGAT 59.107 43.478 0.00 0.00 39.87 1.98
3164 3344 3.289836 CCATGCATCAAATGGTGGTAGA 58.710 45.455 0.00 0.00 39.87 2.59
3216 3410 4.398358 GGGGTTTTATCCTCCTTTTCGAAG 59.602 45.833 0.00 0.00 0.00 3.79
3235 3429 2.969300 TTCAAAAGCTTCGCCGGGGT 62.969 55.000 19.13 0.00 0.00 4.95
3263 3457 5.411781 AGTAGGAAGATCATGAACACGAAC 58.588 41.667 0.00 0.00 0.00 3.95
3264 3458 5.661056 AGTAGGAAGATCATGAACACGAA 57.339 39.130 0.00 0.00 0.00 3.85
3278 3472 0.108138 CCACGGCAGGAAGTAGGAAG 60.108 60.000 0.00 0.00 0.00 3.46
3279 3473 1.980052 CCACGGCAGGAAGTAGGAA 59.020 57.895 0.00 0.00 0.00 3.36
3280 3474 2.656069 GCCACGGCAGGAAGTAGGA 61.656 63.158 2.36 0.00 41.49 2.94
3281 3475 2.125106 GCCACGGCAGGAAGTAGG 60.125 66.667 2.36 0.00 41.49 3.18
3313 3507 6.032094 CACAAGCTATCACCAAAATGCTAAG 58.968 40.000 0.00 0.00 0.00 2.18
3314 3508 5.476599 ACACAAGCTATCACCAAAATGCTAA 59.523 36.000 0.00 0.00 0.00 3.09
3315 3509 5.009631 ACACAAGCTATCACCAAAATGCTA 58.990 37.500 0.00 0.00 0.00 3.49
3316 3510 3.828451 ACACAAGCTATCACCAAAATGCT 59.172 39.130 0.00 0.00 0.00 3.79
3332 3527 4.795278 GTCTCTGCACAAAAGAAACACAAG 59.205 41.667 0.00 0.00 0.00 3.16
3524 3719 3.953612 ACTCCTGCTGTTGTTTCAAATGA 59.046 39.130 0.00 0.00 0.00 2.57
3528 3723 2.682856 GTGACTCCTGCTGTTGTTTCAA 59.317 45.455 0.00 0.00 0.00 2.69
3532 3727 2.418368 TTGTGACTCCTGCTGTTGTT 57.582 45.000 0.00 0.00 0.00 2.83
3537 3732 4.311816 ACAAAAATTGTGACTCCTGCTG 57.688 40.909 0.00 0.00 43.48 4.41
3539 3734 3.730715 CGAACAAAAATTGTGACTCCTGC 59.269 43.478 0.00 0.00 44.59 4.85
3559 3754 5.764686 ACCGTCACATATACTGTATAACCGA 59.235 40.000 11.27 5.71 35.91 4.69
3560 3755 6.005583 ACCGTCACATATACTGTATAACCG 57.994 41.667 11.27 8.92 35.91 4.44
3561 3756 6.643770 CCAACCGTCACATATACTGTATAACC 59.356 42.308 11.27 0.00 35.91 2.85
3562 3757 6.643770 CCCAACCGTCACATATACTGTATAAC 59.356 42.308 11.27 4.83 35.91 1.89
3563 3758 6.324512 ACCCAACCGTCACATATACTGTATAA 59.675 38.462 11.27 0.00 35.91 0.98
3564 3759 5.834742 ACCCAACCGTCACATATACTGTATA 59.165 40.000 9.78 9.78 35.91 1.47
3565 3760 4.652421 ACCCAACCGTCACATATACTGTAT 59.348 41.667 5.53 5.53 35.91 2.29
3568 3763 3.194861 CACCCAACCGTCACATATACTG 58.805 50.000 0.00 0.00 0.00 2.74
3570 3765 3.192466 GACACCCAACCGTCACATATAC 58.808 50.000 0.00 0.00 32.24 1.47
3571 3766 2.168936 GGACACCCAACCGTCACATATA 59.831 50.000 0.00 0.00 33.66 0.86
3572 3767 1.065709 GGACACCCAACCGTCACATAT 60.066 52.381 0.00 0.00 33.66 1.78
3573 3768 0.322322 GGACACCCAACCGTCACATA 59.678 55.000 0.00 0.00 33.66 2.29
3574 3769 1.072505 GGACACCCAACCGTCACAT 59.927 57.895 0.00 0.00 33.66 3.21
3575 3770 2.035237 GAGGACACCCAACCGTCACA 62.035 60.000 0.00 0.00 33.66 3.58
3576 3771 1.301479 GAGGACACCCAACCGTCAC 60.301 63.158 0.00 0.00 33.66 3.67
3577 3772 1.052124 AAGAGGACACCCAACCGTCA 61.052 55.000 0.00 0.00 33.66 4.35
3578 3773 0.108019 AAAGAGGACACCCAACCGTC 59.892 55.000 0.00 0.00 33.88 4.79
3622 3817 3.691342 CCCGGGCACGACAGAAGA 61.691 66.667 11.66 0.00 44.60 2.87
3755 3950 5.129634 TCATCAGGTAGTTGAAGTTTTGCA 58.870 37.500 0.00 0.00 0.00 4.08
3757 3952 7.264373 AGTTCATCAGGTAGTTGAAGTTTTG 57.736 36.000 0.00 0.00 36.61 2.44
3758 3953 8.211629 AGTAGTTCATCAGGTAGTTGAAGTTTT 58.788 33.333 0.00 0.00 39.29 2.43
3763 3958 5.621555 GCGAGTAGTTCATCAGGTAGTTGAA 60.622 44.000 0.00 0.00 34.43 2.69
3813 4008 3.016736 AGTGGTGAGGTTGTTGAAGTTG 58.983 45.455 0.00 0.00 0.00 3.16
3828 4023 6.595326 TGTATTTGAAGCTGAAGATAGTGGTG 59.405 38.462 0.00 0.00 0.00 4.17
3848 4043 7.872138 TCCATAAGGGTTCAGATCTTTGTATT 58.128 34.615 0.00 0.00 38.11 1.89
3926 4121 6.129300 GGAACACAAACAAATATACGTTGCAC 60.129 38.462 0.00 0.00 0.00 4.57
3932 4127 5.938322 AGCTGGAACACAAACAAATATACG 58.062 37.500 0.00 0.00 0.00 3.06
3945 4187 3.113260 ACTTGTCAGTAGCTGGAACAC 57.887 47.619 0.00 0.00 31.51 3.32
3970 4212 3.355816 TCGTCTGCGACAACAAAGT 57.644 47.368 8.91 0.00 42.81 2.66
4154 4397 2.369633 ATCTGGAGGCGGCATCACA 61.370 57.895 17.05 10.72 0.00 3.58
4351 4594 6.375455 CCAATGCTAGTTGTCATTCTAAACCT 59.625 38.462 0.00 0.00 31.15 3.50
4352 4595 6.555315 CCAATGCTAGTTGTCATTCTAAACC 58.445 40.000 0.00 0.00 31.15 3.27
4353 4596 6.030228 GCCAATGCTAGTTGTCATTCTAAAC 58.970 40.000 0.00 0.00 31.15 2.01
4354 4597 6.194796 GCCAATGCTAGTTGTCATTCTAAA 57.805 37.500 0.00 0.00 31.15 1.85
4355 4598 5.818136 GCCAATGCTAGTTGTCATTCTAA 57.182 39.130 0.00 0.00 31.15 2.10
4563 4857 7.760607 AGAGGGAGTACAGTCAATATCTATCA 58.239 38.462 0.00 0.00 0.00 2.15
4641 4936 7.377766 TGATATGTTTCTCACTAAACTTGGC 57.622 36.000 0.00 0.00 39.57 4.52
4772 5333 7.762159 GTCAAATTTCCCAAACTTTGAGTACAA 59.238 33.333 2.87 0.00 38.04 2.41
4777 5338 7.848223 AAAGTCAAATTTCCCAAACTTTGAG 57.152 32.000 2.87 0.00 38.04 3.02
4876 5437 9.811995 GACCAAAAACCATACTTTTCTTTTAGT 57.188 29.630 0.00 0.00 0.00 2.24
4877 5438 9.256477 GGACCAAAAACCATACTTTTCTTTTAG 57.744 33.333 0.00 0.00 0.00 1.85
4881 5442 5.903010 AGGGACCAAAAACCATACTTTTCTT 59.097 36.000 0.00 0.00 0.00 2.52
4893 5454 3.028130 TGGAACTTGAGGGACCAAAAAC 58.972 45.455 0.00 0.00 0.00 2.43
4914 5475 5.045797 GGAGGGACCAAGTCTATACTTTTGT 60.046 44.000 0.00 0.00 43.60 2.83
4967 5528 7.141363 CCAAACTTATCCTGTTTTGAGACTTG 58.859 38.462 0.00 0.00 35.71 3.16
5008 5569 3.403057 CACCGGTCAACGTGCTCG 61.403 66.667 2.59 6.63 42.24 5.03
5014 5575 0.303493 CAGTCAAACACCGGTCAACG 59.697 55.000 2.59 0.00 43.80 4.10
5022 5583 2.955660 TGGTCAATTCCAGTCAAACACC 59.044 45.455 0.00 0.00 33.19 4.16
5032 5593 1.203001 GGTCAACCCTGGTCAATTCCA 60.203 52.381 0.00 0.00 36.00 3.53
5035 5596 0.768622 TCGGTCAACCCTGGTCAATT 59.231 50.000 0.00 0.00 0.00 2.32
5046 5607 6.664515 TCAAATTTACTGTTCATCGGTCAAC 58.335 36.000 0.00 0.00 36.91 3.18
5096 5657 6.707711 CATGTTGGTTGTCACAAAATTTCAG 58.292 36.000 0.00 0.00 0.00 3.02
5126 5705 6.134061 GGTTTGAACGATGAACAGTAAAGTC 58.866 40.000 0.00 0.00 0.00 3.01
5128 5707 5.449304 GGGTTTGAACGATGAACAGTAAAG 58.551 41.667 0.00 0.00 0.00 1.85
5139 5718 1.810151 CATTGACCGGGTTTGAACGAT 59.190 47.619 6.32 0.00 0.00 3.73
5142 5721 1.601914 GCACATTGACCGGGTTTGAAC 60.602 52.381 6.32 0.00 0.00 3.18
5151 5730 5.698832 TCAAGATTTTAAGCACATTGACCG 58.301 37.500 0.00 0.00 0.00 4.79
5152 5731 6.095377 CCTCAAGATTTTAAGCACATTGACC 58.905 40.000 0.00 0.00 0.00 4.02
5158 5737 4.079253 GGTCCCTCAAGATTTTAAGCACA 58.921 43.478 0.00 0.00 0.00 4.57
5190 5869 2.976185 GGTCCCTCAAATTCCCCAAAAA 59.024 45.455 0.00 0.00 0.00 1.94
5207 5886 8.710835 TGAAAAGAAAAGTATGTTTTTGGTCC 57.289 30.769 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.