Multiple sequence alignment - TraesCS2B01G200500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G200500 chr2B 100.000 2273 0 0 1 2273 179052530 179050258 0.000000e+00 4198
1 TraesCS2B01G200500 chr2A 94.022 803 35 8 760 1558 132166089 132165296 0.000000e+00 1205
2 TraesCS2B01G200500 chr2A 87.262 526 29 18 131 652 132192686 132192195 1.180000e-157 566
3 TraesCS2B01G200500 chr2A 82.542 590 53 20 1088 1653 132165075 132164512 7.350000e-130 473
4 TraesCS2B01G200500 chr2A 90.043 231 17 2 1662 1889 132163563 132163336 6.140000e-76 294
5 TraesCS2B01G200500 chr2A 91.406 128 9 2 1 127 21555418 21555544 8.350000e-40 174
6 TraesCS2B01G200500 chr2A 91.398 93 4 3 656 747 132191893 132191804 8.520000e-25 124
7 TraesCS2B01G200500 chr2D 86.961 928 61 20 995 1884 125688932 125688027 0.000000e+00 989
8 TraesCS2B01G200500 chr2D 82.166 914 73 45 132 1025 125689844 125689001 0.000000e+00 702
9 TraesCS2B01G200500 chr2D 81.223 703 56 37 995 1664 125927677 125927018 4.360000e-137 497
10 TraesCS2B01G200500 chr2D 85.979 378 46 5 1901 2273 125684874 125684499 4.550000e-107 398
11 TraesCS2B01G200500 chr2D 81.726 394 37 21 656 1031 125928083 125927707 1.710000e-76 296
12 TraesCS2B01G200500 chr5A 92.126 127 9 1 1 127 600476712 600476587 6.450000e-41 178
13 TraesCS2B01G200500 chr5A 92.063 126 9 1 1 126 441172586 441172710 2.320000e-40 176
14 TraesCS2B01G200500 chr3A 92.000 125 9 1 1 125 610505586 610505709 8.350000e-40 174
15 TraesCS2B01G200500 chr1A 92.000 125 8 1 1 125 454970566 454970688 8.350000e-40 174
16 TraesCS2B01G200500 chr1A 91.339 127 10 1 1 127 570277472 570277347 3.000000e-39 172
17 TraesCS2B01G200500 chr5D 91.339 127 10 1 1 127 104117642 104117517 3.000000e-39 172
18 TraesCS2B01G200500 chr4A 91.339 127 10 1 1 127 141302128 141302003 3.000000e-39 172
19 TraesCS2B01G200500 chr4B 89.130 138 13 2 1 137 416633321 416633457 1.080000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G200500 chr2B 179050258 179052530 2272 True 4198.000000 4198 100.000000 1 2273 1 chr2B.!!$R1 2272
1 TraesCS2B01G200500 chr2A 132163336 132166089 2753 True 657.333333 1205 88.869000 760 1889 3 chr2A.!!$R1 1129
2 TraesCS2B01G200500 chr2A 132191804 132192686 882 True 345.000000 566 89.330000 131 747 2 chr2A.!!$R2 616
3 TraesCS2B01G200500 chr2D 125684499 125689844 5345 True 696.333333 989 85.035333 132 2273 3 chr2D.!!$R1 2141
4 TraesCS2B01G200500 chr2D 125927018 125928083 1065 True 396.500000 497 81.474500 656 1664 2 chr2D.!!$R2 1008

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
223 224 0.10852 GTCGATAGTTCCCAACGCCA 60.109 55.0 0.0 0.0 36.23 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2066 7281 0.032515 TCTTGGATCTACCCTCGGCA 60.033 55.0 0.0 0.0 38.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.923414 AAGTTGGAATGGAGTAACTTATGAC 57.077 36.000 0.00 0.00 40.45 3.06
26 27 7.259088 AGTTGGAATGGAGTAACTTATGACT 57.741 36.000 0.00 0.00 29.65 3.41
27 28 7.690256 AGTTGGAATGGAGTAACTTATGACTT 58.310 34.615 0.00 0.00 29.65 3.01
28 29 8.822805 AGTTGGAATGGAGTAACTTATGACTTA 58.177 33.333 0.00 0.00 29.65 2.24
29 30 9.614792 GTTGGAATGGAGTAACTTATGACTTAT 57.385 33.333 0.00 0.00 0.00 1.73
42 43 7.787725 CTTATGACTTATAAGTTGGGGTGAC 57.212 40.000 18.96 4.87 42.11 3.67
43 44 7.504926 TTATGACTTATAAGTTGGGGTGACT 57.495 36.000 18.96 0.00 39.88 3.41
44 45 5.836024 TGACTTATAAGTTGGGGTGACTT 57.164 39.130 18.96 0.00 39.88 3.01
45 46 6.938698 TGACTTATAAGTTGGGGTGACTTA 57.061 37.500 18.96 0.00 42.07 2.24
46 47 7.504926 TGACTTATAAGTTGGGGTGACTTAT 57.495 36.000 18.96 12.48 46.52 1.73
47 48 8.612486 TGACTTATAAGTTGGGGTGACTTATA 57.388 34.615 18.96 10.90 44.36 0.98
52 53 9.675464 TTATAAGTTGGGGTGACTTATAAGTTG 57.325 33.333 18.96 0.00 46.80 3.16
53 54 4.918588 AGTTGGGGTGACTTATAAGTTGG 58.081 43.478 18.96 0.00 39.88 3.77
54 55 4.014406 GTTGGGGTGACTTATAAGTTGGG 58.986 47.826 18.96 0.00 39.88 4.12
55 56 3.261962 TGGGGTGACTTATAAGTTGGGT 58.738 45.455 18.96 0.00 39.88 4.51
56 57 3.264964 TGGGGTGACTTATAAGTTGGGTC 59.735 47.826 18.96 7.15 39.88 4.46
57 58 3.371273 GGGGTGACTTATAAGTTGGGTCC 60.371 52.174 18.96 14.80 39.88 4.46
58 59 3.264964 GGGTGACTTATAAGTTGGGTCCA 59.735 47.826 18.96 8.69 39.88 4.02
59 60 4.079958 GGGTGACTTATAAGTTGGGTCCAT 60.080 45.833 18.96 0.00 39.88 3.41
60 61 5.506708 GGTGACTTATAAGTTGGGTCCATT 58.493 41.667 18.96 0.00 39.88 3.16
61 62 5.949952 GGTGACTTATAAGTTGGGTCCATTT 59.050 40.000 18.96 0.00 39.88 2.32
62 63 6.127730 GGTGACTTATAAGTTGGGTCCATTTG 60.128 42.308 18.96 0.00 39.88 2.32
63 64 5.949354 TGACTTATAAGTTGGGTCCATTTGG 59.051 40.000 18.96 0.00 39.88 3.28
64 65 5.899278 ACTTATAAGTTGGGTCCATTTGGT 58.101 37.500 12.50 0.00 35.21 3.67
65 66 7.034967 ACTTATAAGTTGGGTCCATTTGGTA 57.965 36.000 12.50 0.00 35.21 3.25
66 67 7.471890 ACTTATAAGTTGGGTCCATTTGGTAA 58.528 34.615 12.50 0.00 35.21 2.85
67 68 7.951245 ACTTATAAGTTGGGTCCATTTGGTAAA 59.049 33.333 12.50 0.00 35.21 2.01
68 69 8.722622 TTATAAGTTGGGTCCATTTGGTAAAA 57.277 30.769 0.00 0.00 36.34 1.52
69 70 7.806680 ATAAGTTGGGTCCATTTGGTAAAAT 57.193 32.000 0.00 0.00 36.39 1.82
70 71 8.903059 ATAAGTTGGGTCCATTTGGTAAAATA 57.097 30.769 0.00 0.00 34.14 1.40
71 72 7.619512 AAGTTGGGTCCATTTGGTAAAATAA 57.380 32.000 0.00 0.00 34.14 1.40
72 73 7.239763 AGTTGGGTCCATTTGGTAAAATAAG 57.760 36.000 0.00 0.00 34.14 1.73
73 74 6.785466 AGTTGGGTCCATTTGGTAAAATAAGT 59.215 34.615 0.00 0.00 34.14 2.24
74 75 6.844097 TGGGTCCATTTGGTAAAATAAGTC 57.156 37.500 0.00 0.00 34.14 3.01
75 76 6.315714 TGGGTCCATTTGGTAAAATAAGTCA 58.684 36.000 0.00 0.00 34.14 3.41
76 77 6.957020 TGGGTCCATTTGGTAAAATAAGTCAT 59.043 34.615 0.00 0.00 34.14 3.06
77 78 7.123547 TGGGTCCATTTGGTAAAATAAGTCATC 59.876 37.037 0.00 0.00 34.14 2.92
78 79 7.342026 GGGTCCATTTGGTAAAATAAGTCATCT 59.658 37.037 0.00 0.00 34.14 2.90
79 80 8.749354 GGTCCATTTGGTAAAATAAGTCATCTT 58.251 33.333 0.00 0.00 34.14 2.40
122 123 6.783708 AAGTTGGTGACTTATTTGAAACCA 57.216 33.333 0.00 0.00 46.61 3.67
123 124 6.783708 AGTTGGTGACTTATTTGAAACCAA 57.216 33.333 1.07 1.07 43.50 3.67
124 125 7.176589 AGTTGGTGACTTATTTGAAACCAAA 57.823 32.000 6.65 0.00 46.21 3.28
125 126 7.039270 AGTTGGTGACTTATTTGAAACCAAAC 58.961 34.615 6.65 2.75 46.21 2.93
126 127 6.531503 TGGTGACTTATTTGAAACCAAACA 57.468 33.333 0.00 0.00 36.48 2.83
127 128 6.936279 TGGTGACTTATTTGAAACCAAACAA 58.064 32.000 0.00 0.00 36.48 2.83
128 129 7.560368 TGGTGACTTATTTGAAACCAAACAAT 58.440 30.769 0.00 0.00 36.48 2.71
129 130 7.708752 TGGTGACTTATTTGAAACCAAACAATC 59.291 33.333 0.00 0.00 36.48 2.67
184 185 2.478894 GCTCAAGACGACGATGGAAAAA 59.521 45.455 0.00 0.00 0.00 1.94
189 190 2.729882 AGACGACGATGGAAAAACTTCG 59.270 45.455 0.00 0.00 37.60 3.79
195 196 0.521735 ATGGAAAAACTTCGGCGAGC 59.478 50.000 10.46 0.00 0.00 5.03
223 224 0.108520 GTCGATAGTTCCCAACGCCA 60.109 55.000 0.00 0.00 36.23 5.69
273 274 3.688272 CACACTTCTCAAACAACTGCAG 58.312 45.455 13.48 13.48 0.00 4.41
275 276 1.331756 ACTTCTCAAACAACTGCAGCG 59.668 47.619 15.27 8.03 0.00 5.18
376 378 2.231235 ACGAATCCCATTGGAGCAAAAC 59.769 45.455 3.62 0.00 46.08 2.43
389 391 0.587985 GCAAAACGTTCGTCTTGCGT 60.588 50.000 17.92 0.00 42.13 5.24
394 396 2.686558 ACGTTCGTCTTGCGTTACTA 57.313 45.000 0.00 0.00 42.13 1.82
400 402 5.481472 GTTCGTCTTGCGTTACTATTCATG 58.519 41.667 0.00 0.00 42.13 3.07
401 403 4.109766 TCGTCTTGCGTTACTATTCATGG 58.890 43.478 0.00 0.00 42.13 3.66
402 404 3.302480 CGTCTTGCGTTACTATTCATGGC 60.302 47.826 0.00 0.00 35.54 4.40
403 405 3.002348 GTCTTGCGTTACTATTCATGGCC 59.998 47.826 0.00 0.00 0.00 5.36
404 406 1.961793 TGCGTTACTATTCATGGCCC 58.038 50.000 0.00 0.00 0.00 5.80
405 407 0.865769 GCGTTACTATTCATGGCCCG 59.134 55.000 0.00 0.00 0.00 6.13
411 414 3.469863 TATTCATGGCCCGCGACCC 62.470 63.158 8.23 8.02 0.00 4.46
423 432 2.099831 CGACCCGAGCACGTACTC 59.900 66.667 5.66 5.66 37.88 2.59
430 439 1.596727 CCGAGCACGTACTCCTACTAC 59.403 57.143 10.20 0.00 37.88 2.73
431 440 2.548875 CGAGCACGTACTCCTACTACT 58.451 52.381 10.20 0.00 32.79 2.57
432 441 3.491619 CCGAGCACGTACTCCTACTACTA 60.492 52.174 10.20 0.00 37.88 1.82
433 442 4.305769 CGAGCACGTACTCCTACTACTAT 58.694 47.826 10.20 0.00 32.79 2.12
434 443 4.749099 CGAGCACGTACTCCTACTACTATT 59.251 45.833 10.20 0.00 32.79 1.73
435 444 5.236047 CGAGCACGTACTCCTACTACTATTT 59.764 44.000 10.20 0.00 32.79 1.40
436 445 6.563753 CGAGCACGTACTCCTACTACTATTTC 60.564 46.154 10.20 0.00 32.79 2.17
437 446 5.530543 AGCACGTACTCCTACTACTATTTCC 59.469 44.000 0.00 0.00 0.00 3.13
438 447 5.278218 GCACGTACTCCTACTACTATTTCCC 60.278 48.000 0.00 0.00 0.00 3.97
439 448 5.240403 CACGTACTCCTACTACTATTTCCCC 59.760 48.000 0.00 0.00 0.00 4.81
440 449 5.133491 ACGTACTCCTACTACTATTTCCCCT 59.867 44.000 0.00 0.00 0.00 4.79
441 450 6.330250 ACGTACTCCTACTACTATTTCCCCTA 59.670 42.308 0.00 0.00 0.00 3.53
455 464 1.238615 CCCCTAGGACTACTACCCCA 58.761 60.000 11.48 0.00 33.47 4.96
456 465 1.147399 CCCCTAGGACTACTACCCCAG 59.853 61.905 11.48 0.00 33.47 4.45
457 466 1.858246 CCCTAGGACTACTACCCCAGT 59.142 57.143 11.48 0.00 41.62 4.00
458 467 2.424523 CCCTAGGACTACTACCCCAGTG 60.425 59.091 11.48 0.00 38.24 3.66
459 468 2.424523 CCTAGGACTACTACCCCAGTGG 60.425 59.091 1.05 0.63 41.37 4.00
465 474 2.924977 ACTACTACCCCAGTGGAGTACT 59.075 50.000 11.95 0.00 37.96 2.73
484 493 5.877012 AGTACTCACCATGTCATCACATTTC 59.123 40.000 0.00 0.00 40.66 2.17
493 502 3.501828 TGTCATCACATTTCCCTTTGTCG 59.498 43.478 0.00 0.00 0.00 4.35
515 524 3.949754 GTGATGGAGGCATTTCATTCTGA 59.050 43.478 0.00 0.00 0.00 3.27
522 531 5.359009 GGAGGCATTTCATTCTGATTTGAGA 59.641 40.000 0.00 0.00 0.00 3.27
525 534 7.265673 AGGCATTTCATTCTGATTTGAGATTG 58.734 34.615 0.00 0.00 0.00 2.67
533 542 6.801539 TTCTGATTTGAGATTGTTTACGCT 57.198 33.333 0.00 0.00 0.00 5.07
612 624 2.906691 ATAGGCTGCTCATCACTGAC 57.093 50.000 0.00 0.00 0.00 3.51
642 654 6.747280 CCTCAACTTAACACTGTGTTCAAAAG 59.253 38.462 27.73 25.07 40.22 2.27
646 658 8.973378 CAACTTAACACTGTGTTCAAAAGAAAA 58.027 29.630 28.18 16.58 40.22 2.29
647 659 9.535878 AACTTAACACTGTGTTCAAAAGAAAAA 57.464 25.926 28.18 16.05 40.22 1.94
648 660 8.974408 ACTTAACACTGTGTTCAAAAGAAAAAC 58.026 29.630 28.18 0.00 40.22 2.43
649 661 9.191995 CTTAACACTGTGTTCAAAAGAAAAACT 57.808 29.630 27.73 3.51 40.22 2.66
650 662 9.535878 TTAACACTGTGTTCAAAAGAAAAACTT 57.464 25.926 27.73 2.87 40.22 2.66
652 664 9.535878 AACACTGTGTTCAAAAGAAAAACTTAA 57.464 25.926 19.85 0.00 35.27 1.85
653 665 9.535878 ACACTGTGTTCAAAAGAAAAACTTAAA 57.464 25.926 7.80 0.00 37.93 1.52
737 1048 0.550914 TTTGGGACCAAGCACACTCT 59.449 50.000 3.73 0.00 37.24 3.24
739 1050 1.053835 TGGGACCAAGCACACTCTCA 61.054 55.000 0.00 0.00 0.00 3.27
740 1051 0.321122 GGGACCAAGCACACTCTCAG 60.321 60.000 0.00 0.00 0.00 3.35
742 1053 0.250038 GACCAAGCACACTCTCAGCA 60.250 55.000 0.00 0.00 0.00 4.41
743 1054 0.533755 ACCAAGCACACTCTCAGCAC 60.534 55.000 0.00 0.00 0.00 4.40
745 1056 1.590932 CAAGCACACTCTCAGCACTT 58.409 50.000 0.00 0.00 0.00 3.16
872 1196 1.954146 GAAGTGCGTTCGCTCACCA 60.954 57.895 17.63 0.00 33.59 4.17
906 1231 1.587066 TTATAAACCACCCGCTCCCT 58.413 50.000 0.00 0.00 0.00 4.20
948 1273 1.194218 TCTCCATCAAGATCGGCACA 58.806 50.000 0.00 0.00 0.00 4.57
949 1274 1.137675 TCTCCATCAAGATCGGCACAG 59.862 52.381 0.00 0.00 0.00 3.66
950 1275 0.904649 TCCATCAAGATCGGCACAGT 59.095 50.000 0.00 0.00 0.00 3.55
951 1276 2.101415 CTCCATCAAGATCGGCACAGTA 59.899 50.000 0.00 0.00 0.00 2.74
952 1277 2.159099 TCCATCAAGATCGGCACAGTAC 60.159 50.000 0.00 0.00 0.00 2.73
953 1278 2.205074 CATCAAGATCGGCACAGTACC 58.795 52.381 0.00 0.00 0.00 3.34
957 1282 1.218047 GATCGGCACAGTACCAGCA 59.782 57.895 4.49 0.00 0.00 4.41
1285 1714 0.179086 GCTGTAAGGGAGAGCAGAGC 60.179 60.000 0.00 0.00 43.99 4.09
1286 1715 1.189752 CTGTAAGGGAGAGCAGAGCA 58.810 55.000 0.00 0.00 0.00 4.26
1287 1716 1.761784 CTGTAAGGGAGAGCAGAGCAT 59.238 52.381 0.00 0.00 0.00 3.79
1395 1829 3.081710 TGGGTTGTCTCTGTCGATCTA 57.918 47.619 0.00 0.00 0.00 1.98
1411 1845 4.220821 TCGATCTACCTCTTGTTGCTTCTT 59.779 41.667 0.00 0.00 0.00 2.52
1416 1850 2.872858 ACCTCTTGTTGCTTCTTTCGAC 59.127 45.455 0.00 0.00 0.00 4.20
1418 1852 2.218603 TCTTGTTGCTTCTTTCGACCC 58.781 47.619 0.00 0.00 0.00 4.46
1438 1876 4.003648 CCCACTGAAGTTGTTATCTCCAC 58.996 47.826 0.00 0.00 0.00 4.02
1468 1906 0.305313 GCGTGTGCCGTTCTTTGTTA 59.695 50.000 0.00 0.00 39.32 2.41
1477 1915 4.024387 TGCCGTTCTTTGTTAGTGTCAATC 60.024 41.667 0.00 0.00 0.00 2.67
1480 1922 6.401153 GCCGTTCTTTGTTAGTGTCAATCTAG 60.401 42.308 0.00 0.00 0.00 2.43
1488 1930 6.999950 TGTTAGTGTCAATCTAGGCAAGTTA 58.000 36.000 0.00 0.00 0.00 2.24
1493 1935 8.045176 AGTGTCAATCTAGGCAAGTTATTTTC 57.955 34.615 0.00 0.00 0.00 2.29
1508 1950 8.919661 CAAGTTATTTTCATTTTCTGAAGAGGC 58.080 33.333 0.00 0.00 44.48 4.70
1511 1953 6.661304 ATTTTCATTTTCTGAAGAGGCTGT 57.339 33.333 0.00 0.00 44.48 4.40
1537 1979 8.932945 TGTTCAGTTATCTTAATGTGCTCTAG 57.067 34.615 0.00 0.00 0.00 2.43
1538 1980 8.749354 TGTTCAGTTATCTTAATGTGCTCTAGA 58.251 33.333 0.00 0.00 0.00 2.43
1560 2021 3.929610 AGATCTGTCGCTTCTTGCTTAAC 59.070 43.478 0.00 0.00 40.11 2.01
1566 2034 5.775686 TGTCGCTTCTTGCTTAACTTAGTA 58.224 37.500 0.00 0.00 40.11 1.82
1618 2754 3.243602 TGTGTCAAGTTTAGTGCGCTCTA 60.244 43.478 14.85 14.85 0.00 2.43
1638 2774 7.044249 CGCTCTATTGATTTGCAATCAGAAAAG 60.044 37.037 0.00 4.99 43.64 2.27
1657 3718 7.992033 CAGAAAAGGAAATATCTGACCTGAGAT 59.008 37.037 0.00 0.00 41.38 2.75
1659 3720 9.838339 GAAAAGGAAATATCTGACCTGAGATAA 57.162 33.333 0.00 0.00 38.23 1.75
1660 3721 9.620259 AAAAGGAAATATCTGACCTGAGATAAC 57.380 33.333 0.00 0.00 38.23 1.89
1678 3754 9.956720 TGAGATAACTAGGCGTTAACTAATTAC 57.043 33.333 3.71 0.00 40.15 1.89
1685 3761 8.199449 ACTAGGCGTTAACTAATTACTTATGCA 58.801 33.333 3.71 0.00 0.00 3.96
1708 3784 3.957435 ATGCCCCTCGGTCTCGACA 62.957 63.158 0.00 0.00 40.88 4.35
1722 3798 2.036346 TCTCGACATGGGTGATAGCATG 59.964 50.000 0.00 0.00 0.00 4.06
1817 3893 7.763172 TTACACACAACTAAGCAAAAATTGG 57.237 32.000 0.00 0.00 0.00 3.16
1860 3939 1.816224 ACCAAACACTGAACCACACAC 59.184 47.619 0.00 0.00 0.00 3.82
1863 3942 2.325583 AACACTGAACCACACACGAT 57.674 45.000 0.00 0.00 0.00 3.73
1870 3949 1.127951 GAACCACACACGATAAAGCCG 59.872 52.381 0.00 0.00 0.00 5.52
1886 3965 2.276743 CGACTCTCTTCGACGGCG 60.277 66.667 2.87 2.87 41.78 6.46
1891 7106 2.507102 CTCTTCGACGGCGTGCAT 60.507 61.111 21.19 0.00 38.98 3.96
1893 7108 0.595053 CTCTTCGACGGCGTGCATAT 60.595 55.000 21.19 0.00 38.98 1.78
1897 7112 1.588932 CGACGGCGTGCATATGAGT 60.589 57.895 21.19 0.00 0.00 3.41
1899 7114 1.006832 GACGGCGTGCATATGAGTTT 58.993 50.000 21.19 0.00 0.00 2.66
1906 7121 1.006086 TGCATATGAGTTTGGCGTCG 58.994 50.000 6.97 0.00 0.00 5.12
1909 7124 2.348872 GCATATGAGTTTGGCGTCGATG 60.349 50.000 6.97 0.00 0.00 3.84
1915 7130 3.187700 GAGTTTGGCGTCGATGACTTAT 58.812 45.455 12.67 0.00 0.00 1.73
1916 7131 3.187700 AGTTTGGCGTCGATGACTTATC 58.812 45.455 12.67 0.04 0.00 1.75
1948 7163 3.244112 ACTTGTAGAAGACCCAACCTTCG 60.244 47.826 6.63 0.00 43.44 3.79
1950 7165 2.036733 TGTAGAAGACCCAACCTTCGTG 59.963 50.000 0.00 0.00 43.44 4.35
1957 7172 1.338769 ACCCAACCTTCGTGCTCATAC 60.339 52.381 0.00 0.00 0.00 2.39
1958 7173 1.338674 CCCAACCTTCGTGCTCATACA 60.339 52.381 0.00 0.00 0.00 2.29
1960 7175 2.609459 CCAACCTTCGTGCTCATACATC 59.391 50.000 0.00 0.00 0.00 3.06
1964 7179 1.414181 CTTCGTGCTCATACATCCCCT 59.586 52.381 0.00 0.00 0.00 4.79
1965 7180 2.375014 TCGTGCTCATACATCCCCTA 57.625 50.000 0.00 0.00 0.00 3.53
1975 7190 1.365633 CATCCCCTAGACGAGCAGC 59.634 63.158 0.00 0.00 0.00 5.25
1984 7199 1.446966 GACGAGCAGCTTCACCTCC 60.447 63.158 0.00 0.00 0.00 4.30
1989 7204 1.222113 GCAGCTTCACCTCCCTACC 59.778 63.158 0.00 0.00 0.00 3.18
1993 7208 0.690762 GCTTCACCTCCCTACCACAA 59.309 55.000 0.00 0.00 0.00 3.33
1995 7210 2.681097 GCTTCACCTCCCTACCACAATC 60.681 54.545 0.00 0.00 0.00 2.67
1996 7211 2.335681 TCACCTCCCTACCACAATCA 57.664 50.000 0.00 0.00 0.00 2.57
2022 7237 2.076207 TGCATGAGGGGAATCATTGG 57.924 50.000 0.00 0.00 37.84 3.16
2026 7241 2.826674 TGAGGGGAATCATTGGGAAC 57.173 50.000 0.00 0.00 0.00 3.62
2058 7273 0.687354 GGACAAGGAAGAGCTGGTGA 59.313 55.000 0.00 0.00 0.00 4.02
2066 7281 2.356535 GGAAGAGCTGGTGATGGACATT 60.357 50.000 0.00 0.00 0.00 2.71
2067 7282 2.414994 AGAGCTGGTGATGGACATTG 57.585 50.000 0.00 0.00 0.00 2.82
2069 7284 0.682209 AGCTGGTGATGGACATTGCC 60.682 55.000 0.00 0.00 0.00 4.52
2070 7285 1.996786 GCTGGTGATGGACATTGCCG 61.997 60.000 0.00 0.00 0.00 5.69
2074 7289 1.097547 GTGATGGACATTGCCGAGGG 61.098 60.000 0.00 0.00 0.00 4.30
2081 7296 0.759346 ACATTGCCGAGGGTAGATCC 59.241 55.000 0.00 0.00 0.00 3.36
2089 7304 3.306156 GCCGAGGGTAGATCCAAGAATAC 60.306 52.174 0.00 0.00 38.11 1.89
2100 7315 1.732259 CCAAGAATACGGTGAGCACAC 59.268 52.381 5.63 5.63 45.27 3.82
2163 7382 0.541764 ATGTGTTTCCCGCCCACATT 60.542 50.000 0.00 0.00 45.01 2.71
2172 7391 0.808755 CCGCCCACATTGTCCTAAAC 59.191 55.000 0.00 0.00 0.00 2.01
2184 7403 5.979288 TTGTCCTAAACAGAGAGGTAGTC 57.021 43.478 0.00 0.00 39.58 2.59
2198 7417 0.374410 GTAGTCACGAGCGAGAGGAC 59.626 60.000 0.00 0.00 0.00 3.85
2210 7429 0.586319 GAGAGGACGAGATCGCAGAG 59.414 60.000 1.39 0.00 43.63 3.35
2224 7443 0.438830 GCAGAGCGTAAACAACCTCG 59.561 55.000 0.00 0.00 33.23 4.63
2231 7450 1.069022 CGTAAACAACCTCGGTCGAGA 60.069 52.381 20.34 0.00 44.53 4.04
2232 7451 2.415090 CGTAAACAACCTCGGTCGAGAT 60.415 50.000 20.34 1.14 44.53 2.75
2235 7454 1.519455 CAACCTCGGTCGAGATGCC 60.519 63.158 20.34 0.00 44.53 4.40
2257 7476 4.327357 CCTCGAACACATTGCTAAGTACAG 59.673 45.833 0.00 0.00 0.00 2.74
2259 7478 3.481951 CGAACACATTGCTAAGTACAGCG 60.482 47.826 0.00 0.00 44.88 5.18
2264 7483 2.088950 TTGCTAAGTACAGCGGGTTC 57.911 50.000 0.00 0.00 44.88 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.822805 AGTCATAAGTTACTCCATTCCAACTTA 58.177 33.333 7.89 7.89 43.68 2.24
1 2 7.690256 AGTCATAAGTTACTCCATTCCAACTT 58.310 34.615 4.24 4.24 42.32 2.66
2 3 7.259088 AGTCATAAGTTACTCCATTCCAACT 57.741 36.000 0.00 0.00 32.73 3.16
3 4 7.923414 AAGTCATAAGTTACTCCATTCCAAC 57.077 36.000 0.00 0.00 0.00 3.77
19 20 7.504926 AGTCACCCCAACTTATAAGTCATAA 57.495 36.000 18.28 0.00 38.57 1.90
20 21 7.504926 AAGTCACCCCAACTTATAAGTCATA 57.495 36.000 18.28 0.00 38.57 2.15
21 22 6.388619 AAGTCACCCCAACTTATAAGTCAT 57.611 37.500 18.28 1.19 38.57 3.06
22 23 5.836024 AAGTCACCCCAACTTATAAGTCA 57.164 39.130 18.28 0.00 38.57 3.41
27 28 8.269317 CCAACTTATAAGTCACCCCAACTTATA 58.731 37.037 18.28 10.26 44.28 0.98
28 29 7.116736 CCAACTTATAAGTCACCCCAACTTAT 58.883 38.462 18.28 11.86 46.48 1.73
29 30 6.478129 CCAACTTATAAGTCACCCCAACTTA 58.522 40.000 18.28 0.00 41.91 2.24
30 31 5.321927 CCAACTTATAAGTCACCCCAACTT 58.678 41.667 18.28 0.00 38.57 2.66
31 32 4.263771 CCCAACTTATAAGTCACCCCAACT 60.264 45.833 18.28 0.00 38.57 3.16
32 33 4.014406 CCCAACTTATAAGTCACCCCAAC 58.986 47.826 18.28 0.00 38.57 3.77
33 34 3.658705 ACCCAACTTATAAGTCACCCCAA 59.341 43.478 18.28 0.00 38.57 4.12
34 35 3.261962 ACCCAACTTATAAGTCACCCCA 58.738 45.455 18.28 0.00 38.57 4.96
35 36 3.371273 GGACCCAACTTATAAGTCACCCC 60.371 52.174 18.28 11.96 38.57 4.95
36 37 3.264964 TGGACCCAACTTATAAGTCACCC 59.735 47.826 18.28 14.43 38.57 4.61
37 38 4.563140 TGGACCCAACTTATAAGTCACC 57.437 45.455 18.28 15.68 38.57 4.02
38 39 6.127730 CCAAATGGACCCAACTTATAAGTCAC 60.128 42.308 18.28 8.29 36.19 3.67
39 40 5.949354 CCAAATGGACCCAACTTATAAGTCA 59.051 40.000 18.28 11.07 36.19 3.41
40 41 5.949952 ACCAAATGGACCCAACTTATAAGTC 59.050 40.000 18.28 5.98 37.11 3.01
41 42 5.899278 ACCAAATGGACCCAACTTATAAGT 58.101 37.500 12.50 12.50 38.76 2.24
42 43 7.948034 TTACCAAATGGACCCAACTTATAAG 57.052 36.000 11.05 11.05 38.94 1.73
43 44 8.722622 TTTTACCAAATGGACCCAACTTATAA 57.277 30.769 6.42 0.00 38.94 0.98
44 45 8.903059 ATTTTACCAAATGGACCCAACTTATA 57.097 30.769 6.42 0.00 38.94 0.98
45 46 7.806680 ATTTTACCAAATGGACCCAACTTAT 57.193 32.000 6.42 0.00 38.94 1.73
46 47 8.722622 TTATTTTACCAAATGGACCCAACTTA 57.277 30.769 6.42 0.00 38.94 2.24
47 48 7.291416 ACTTATTTTACCAAATGGACCCAACTT 59.709 33.333 6.42 0.00 38.94 2.66
48 49 6.785466 ACTTATTTTACCAAATGGACCCAACT 59.215 34.615 6.42 0.00 38.94 3.16
49 50 6.999950 ACTTATTTTACCAAATGGACCCAAC 58.000 36.000 6.42 0.00 38.94 3.77
50 51 6.782988 TGACTTATTTTACCAAATGGACCCAA 59.217 34.615 6.42 0.00 38.94 4.12
51 52 6.315714 TGACTTATTTTACCAAATGGACCCA 58.684 36.000 6.42 0.00 38.94 4.51
52 53 6.844097 TGACTTATTTTACCAAATGGACCC 57.156 37.500 6.42 0.00 38.94 4.46
53 54 8.293699 AGATGACTTATTTTACCAAATGGACC 57.706 34.615 6.42 0.00 38.94 4.46
99 100 7.547722 GTTTGGTTTCAAATAAGTCACCAACTT 59.452 33.333 1.03 0.00 42.59 2.66
100 101 6.783708 TTGGTTTCAAATAAGTCACCAACT 57.216 33.333 0.00 0.00 38.97 3.16
101 102 6.814146 TGTTTGGTTTCAAATAAGTCACCAAC 59.186 34.615 1.03 0.00 42.59 3.77
102 103 6.936279 TGTTTGGTTTCAAATAAGTCACCAA 58.064 32.000 0.00 0.00 43.73 3.67
103 104 6.531503 TGTTTGGTTTCAAATAAGTCACCA 57.468 33.333 0.00 0.00 43.73 4.17
104 105 7.926018 AGATTGTTTGGTTTCAAATAAGTCACC 59.074 33.333 7.03 0.00 43.60 4.02
105 106 8.871686 AGATTGTTTGGTTTCAAATAAGTCAC 57.128 30.769 7.03 1.24 43.60 3.67
184 185 3.329688 CTCGTCAGCTCGCCGAAGT 62.330 63.158 0.00 0.00 0.00 3.01
195 196 1.595003 GGAACTATCGACGCTCGTCAG 60.595 57.143 20.35 13.19 44.77 3.51
347 349 2.159156 CCAATGGGATTCGTCTGTACGA 60.159 50.000 0.00 0.00 46.83 3.43
348 350 2.159156 TCCAATGGGATTCGTCTGTACG 60.159 50.000 0.00 0.00 44.05 3.67
349 351 3.458189 CTCCAATGGGATTCGTCTGTAC 58.542 50.000 0.00 0.00 43.91 2.90
350 352 2.158957 GCTCCAATGGGATTCGTCTGTA 60.159 50.000 0.00 0.00 43.91 2.74
351 353 1.407437 GCTCCAATGGGATTCGTCTGT 60.407 52.381 0.00 0.00 43.91 3.41
356 358 2.731968 CGTTTTGCTCCAATGGGATTCG 60.732 50.000 0.00 0.00 43.91 3.34
389 391 0.753867 TCGCGGGCCATGAATAGTAA 59.246 50.000 6.13 0.00 0.00 2.24
394 396 4.875713 GGGTCGCGGGCCATGAAT 62.876 66.667 19.21 0.00 0.00 2.57
405 407 4.112341 AGTACGTGCTCGGGTCGC 62.112 66.667 13.32 0.00 41.85 5.19
411 414 2.548875 AGTAGTAGGAGTACGTGCTCG 58.451 52.381 24.48 6.63 43.34 5.03
421 430 6.045813 AGTCCTAGGGGAAATAGTAGTAGGAG 59.954 46.154 9.46 0.00 44.15 3.69
423 432 6.216854 AGTCCTAGGGGAAATAGTAGTAGG 57.783 45.833 9.46 0.00 44.15 3.18
430 439 5.331906 GGGTAGTAGTCCTAGGGGAAATAG 58.668 50.000 9.46 0.00 44.15 1.73
431 440 4.108614 GGGGTAGTAGTCCTAGGGGAAATA 59.891 50.000 9.46 0.00 44.15 1.40
432 441 3.116434 GGGGTAGTAGTCCTAGGGGAAAT 60.116 52.174 9.46 0.00 44.15 2.17
433 442 2.248423 GGGGTAGTAGTCCTAGGGGAAA 59.752 54.545 9.46 0.00 44.15 3.13
434 443 1.862242 GGGGTAGTAGTCCTAGGGGAA 59.138 57.143 9.46 0.00 44.15 3.97
435 444 1.275774 TGGGGTAGTAGTCCTAGGGGA 60.276 57.143 9.46 0.00 39.70 4.81
436 445 1.147399 CTGGGGTAGTAGTCCTAGGGG 59.853 61.905 9.46 0.00 0.00 4.79
437 446 1.858246 ACTGGGGTAGTAGTCCTAGGG 59.142 57.143 9.46 0.00 38.04 3.53
438 447 2.424523 CCACTGGGGTAGTAGTCCTAGG 60.425 59.091 0.82 0.82 37.60 3.02
439 448 2.512896 TCCACTGGGGTAGTAGTCCTAG 59.487 54.545 0.00 0.00 37.60 3.02
440 449 2.512896 CTCCACTGGGGTAGTAGTCCTA 59.487 54.545 0.00 0.00 37.60 2.94
441 450 1.288335 CTCCACTGGGGTAGTAGTCCT 59.712 57.143 0.00 0.00 37.60 3.85
455 464 2.889512 TGACATGGTGAGTACTCCACT 58.110 47.619 20.11 1.77 41.50 4.00
456 465 3.195610 TGATGACATGGTGAGTACTCCAC 59.804 47.826 20.11 16.41 41.50 4.02
457 466 3.195610 GTGATGACATGGTGAGTACTCCA 59.804 47.826 20.11 12.85 42.60 3.86
458 467 3.195610 TGTGATGACATGGTGAGTACTCC 59.804 47.826 20.11 11.08 0.00 3.85
459 468 4.456280 TGTGATGACATGGTGAGTACTC 57.544 45.455 16.32 16.32 0.00 2.59
465 474 3.010472 AGGGAAATGTGATGACATGGTGA 59.990 43.478 0.00 0.00 42.30 4.02
484 493 1.026718 GCCTCCATCACGACAAAGGG 61.027 60.000 0.00 0.00 0.00 3.95
493 502 3.949754 TCAGAATGAAATGCCTCCATCAC 59.050 43.478 0.00 0.00 45.97 3.06
515 524 6.428159 AGAGTGAAGCGTAAACAATCTCAAAT 59.572 34.615 0.00 0.00 34.67 2.32
522 531 6.183360 CCGATAAAGAGTGAAGCGTAAACAAT 60.183 38.462 0.00 0.00 0.00 2.71
525 534 4.860907 TCCGATAAAGAGTGAAGCGTAAAC 59.139 41.667 0.00 0.00 0.00 2.01
533 542 7.848128 AGGAGTATTTTCCGATAAAGAGTGAA 58.152 34.615 0.00 0.00 42.29 3.18
612 624 0.949105 AGTGTTAAGTTGAGGCGGCG 60.949 55.000 0.51 0.51 0.00 6.46
696 1004 9.226345 CCAAAGCGATTCTCAGTTTAATATTTC 57.774 33.333 0.00 0.00 0.00 2.17
708 1019 0.690192 TGGTCCCAAAGCGATTCTCA 59.310 50.000 0.00 0.00 0.00 3.27
737 1048 3.767711 TCTCCTCTGAAGTAAGTGCTGA 58.232 45.455 0.00 0.00 0.00 4.26
739 1050 5.305644 TCTTTTCTCCTCTGAAGTAAGTGCT 59.694 40.000 0.00 0.00 0.00 4.40
740 1051 5.542779 TCTTTTCTCCTCTGAAGTAAGTGC 58.457 41.667 0.00 0.00 0.00 4.40
742 1053 6.078664 TCCTCTTTTCTCCTCTGAAGTAAGT 58.921 40.000 0.00 0.00 0.00 2.24
743 1054 6.597832 TCCTCTTTTCTCCTCTGAAGTAAG 57.402 41.667 0.00 0.00 0.00 2.34
745 1056 5.246429 GGTTCCTCTTTTCTCCTCTGAAGTA 59.754 44.000 0.00 0.00 0.00 2.24
872 1196 4.488879 GTTTATAAAGACGGAGGTGTCGT 58.511 43.478 0.00 0.00 43.70 4.34
948 1273 1.352352 AGATGTTGCCTTGCTGGTACT 59.648 47.619 0.00 0.00 38.35 2.73
949 1274 1.826385 AGATGTTGCCTTGCTGGTAC 58.174 50.000 0.00 0.00 38.35 3.34
950 1275 2.571653 AGTAGATGTTGCCTTGCTGGTA 59.428 45.455 0.00 0.00 38.35 3.25
951 1276 1.352352 AGTAGATGTTGCCTTGCTGGT 59.648 47.619 0.00 0.00 38.35 4.00
952 1277 1.741706 CAGTAGATGTTGCCTTGCTGG 59.258 52.381 0.00 0.00 39.35 4.85
953 1278 1.131883 GCAGTAGATGTTGCCTTGCTG 59.868 52.381 0.00 0.00 34.28 4.41
957 1282 1.073763 TGGTGCAGTAGATGTTGCCTT 59.926 47.619 0.00 0.00 39.54 4.35
1204 1633 4.805719 CAGTATCTGAAAATACAGCTGCGA 59.194 41.667 15.27 1.73 37.75 5.10
1266 1695 0.179086 GCTCTGCTCTCCCTTACAGC 60.179 60.000 0.00 0.00 0.00 4.40
1395 1829 2.872858 GTCGAAAGAAGCAACAAGAGGT 59.127 45.455 0.00 0.00 45.01 3.85
1411 1845 2.702592 AACAACTTCAGTGGGTCGAA 57.297 45.000 0.00 0.00 0.00 3.71
1416 1850 4.003648 GTGGAGATAACAACTTCAGTGGG 58.996 47.826 0.00 0.00 0.00 4.61
1418 1852 3.123621 GCGTGGAGATAACAACTTCAGTG 59.876 47.826 0.00 0.00 0.00 3.66
1468 1906 7.665559 TGAAAATAACTTGCCTAGATTGACACT 59.334 33.333 0.00 0.00 0.00 3.55
1477 1915 9.912634 TTCAGAAAATGAAAATAACTTGCCTAG 57.087 29.630 0.00 0.00 45.00 3.02
1493 1935 4.843220 ACAACAGCCTCTTCAGAAAATG 57.157 40.909 0.00 0.00 0.00 2.32
1498 1940 3.117491 CTGAACAACAGCCTCTTCAGA 57.883 47.619 0.80 0.00 41.42 3.27
1511 1953 9.371136 CTAGAGCACATTAAGATAACTGAACAA 57.629 33.333 0.00 0.00 0.00 2.83
1560 2021 9.438228 TCTCGGAGATAACATCATACTACTAAG 57.562 37.037 2.97 0.00 33.89 2.18
1566 2034 7.957002 ACATTTCTCGGAGATAACATCATACT 58.043 34.615 8.81 0.00 33.89 2.12
1638 2774 8.527810 CCTAGTTATCTCAGGTCAGATATTTCC 58.472 40.741 0.00 0.00 35.67 3.13
1659 3720 8.199449 TGCATAAGTAATTAGTTAACGCCTAGT 58.801 33.333 22.57 4.86 0.00 2.57
1660 3721 8.485591 GTGCATAAGTAATTAGTTAACGCCTAG 58.514 37.037 22.57 9.49 0.00 3.02
1685 3761 1.613630 AGACCGAGGGGCATCTTGT 60.614 57.895 0.00 0.00 36.48 3.16
1694 3770 2.786495 CCCATGTCGAGACCGAGGG 61.786 68.421 9.32 9.32 46.52 4.30
1698 3774 1.001268 CTATCACCCATGTCGAGACCG 60.001 57.143 0.34 0.00 37.07 4.79
1730 3806 2.925724 TCTTTGCCTCCGTTTCAAGAA 58.074 42.857 0.00 0.00 0.00 2.52
1731 3807 2.631160 TCTTTGCCTCCGTTTCAAGA 57.369 45.000 0.00 0.00 0.00 3.02
1732 3808 3.568538 CAATCTTTGCCTCCGTTTCAAG 58.431 45.455 0.00 0.00 0.00 3.02
1733 3809 3.641437 CAATCTTTGCCTCCGTTTCAA 57.359 42.857 0.00 0.00 0.00 2.69
1798 3874 6.900568 TGTTCCAATTTTTGCTTAGTTGTG 57.099 33.333 0.00 0.00 0.00 3.33
1817 3893 0.312102 GGGCTGTGCTCTTGTTGTTC 59.688 55.000 0.00 0.00 0.00 3.18
1828 3904 0.821711 TGTTTGGTAGTGGGCTGTGC 60.822 55.000 0.00 0.00 0.00 4.57
1860 3939 2.031807 TCGAAGAGAGTCGGCTTTATCG 59.968 50.000 8.41 8.41 41.43 2.92
1863 3942 1.129998 CGTCGAAGAGAGTCGGCTTTA 59.870 52.381 0.00 0.00 43.40 1.85
1870 3949 1.512310 CACGCCGTCGAAGAGAGTC 60.512 63.158 0.00 0.00 36.95 3.36
1886 3965 1.267532 CGACGCCAAACTCATATGCAC 60.268 52.381 0.00 0.00 0.00 4.57
1891 7106 2.165641 AGTCATCGACGCCAAACTCATA 59.834 45.455 0.00 0.00 37.67 2.15
1893 7108 0.317160 AGTCATCGACGCCAAACTCA 59.683 50.000 0.00 0.00 37.67 3.41
1906 7121 2.784380 GTGCGACAGTCGATAAGTCATC 59.216 50.000 27.29 5.84 43.74 2.92
1909 7124 2.546195 AGTGCGACAGTCGATAAGTC 57.454 50.000 27.29 8.06 43.74 3.01
1915 7130 1.232119 TCTACAAGTGCGACAGTCGA 58.768 50.000 27.29 8.98 43.74 4.20
1916 7131 1.979469 CTTCTACAAGTGCGACAGTCG 59.021 52.381 19.10 19.10 43.89 4.18
1917 7132 2.981140 GTCTTCTACAAGTGCGACAGTC 59.019 50.000 0.00 0.00 0.00 3.51
1920 7135 1.000506 GGGTCTTCTACAAGTGCGACA 59.999 52.381 0.00 0.00 0.00 4.35
1921 7136 1.000506 TGGGTCTTCTACAAGTGCGAC 59.999 52.381 0.00 0.00 0.00 5.19
1948 7163 2.029828 CGTCTAGGGGATGTATGAGCAC 60.030 54.545 0.00 0.00 0.00 4.40
1950 7165 2.490115 CTCGTCTAGGGGATGTATGAGC 59.510 54.545 0.00 0.00 33.00 4.26
1957 7172 1.112315 AGCTGCTCGTCTAGGGGATG 61.112 60.000 0.00 0.00 0.00 3.51
1958 7173 0.397816 AAGCTGCTCGTCTAGGGGAT 60.398 55.000 1.00 0.00 0.00 3.85
1960 7175 1.323271 TGAAGCTGCTCGTCTAGGGG 61.323 60.000 1.00 0.00 0.00 4.79
1964 7179 0.811915 GAGGTGAAGCTGCTCGTCTA 59.188 55.000 1.00 0.00 0.00 2.59
1965 7180 1.589113 GAGGTGAAGCTGCTCGTCT 59.411 57.895 1.00 0.00 0.00 4.18
1975 7190 2.571653 TGATTGTGGTAGGGAGGTGAAG 59.428 50.000 0.00 0.00 0.00 3.02
1984 7199 2.026641 CATTGCCCTGATTGTGGTAGG 58.973 52.381 0.00 0.00 0.00 3.18
1989 7204 1.478916 TCATGCATTGCCCTGATTGTG 59.521 47.619 6.12 0.00 0.00 3.33
1993 7208 0.469331 CCCTCATGCATTGCCCTGAT 60.469 55.000 6.12 0.00 0.00 2.90
1995 7210 2.131709 CCCCTCATGCATTGCCCTG 61.132 63.158 6.12 4.15 0.00 4.45
1996 7211 1.877672 TTCCCCTCATGCATTGCCCT 61.878 55.000 6.12 0.00 0.00 5.19
2058 7273 0.469917 CTACCCTCGGCAATGTCCAT 59.530 55.000 0.00 0.00 0.00 3.41
2066 7281 0.032515 TCTTGGATCTACCCTCGGCA 60.033 55.000 0.00 0.00 38.00 5.69
2067 7282 1.120530 TTCTTGGATCTACCCTCGGC 58.879 55.000 0.00 0.00 38.00 5.54
2069 7284 3.057456 CCGTATTCTTGGATCTACCCTCG 60.057 52.174 0.00 0.00 38.00 4.63
2070 7285 3.896272 ACCGTATTCTTGGATCTACCCTC 59.104 47.826 0.00 0.00 38.00 4.30
2074 7289 4.202121 TGCTCACCGTATTCTTGGATCTAC 60.202 45.833 0.00 0.00 0.00 2.59
2081 7296 2.157668 GTGTGTGCTCACCGTATTCTTG 59.842 50.000 15.83 0.00 43.26 3.02
2089 7304 1.821241 CTTCACGTGTGTGCTCACCG 61.821 60.000 16.51 20.55 46.01 4.94
2100 7315 0.884704 CCTTGGTGGTCCTTCACGTG 60.885 60.000 9.94 9.94 38.46 4.49
2101 7316 1.450211 CCTTGGTGGTCCTTCACGT 59.550 57.895 0.00 0.00 38.46 4.49
2104 7319 1.455822 AATCCCTTGGTGGTCCTTCA 58.544 50.000 0.00 0.00 34.23 3.02
2130 7345 5.051891 GAAACACATTTCCCTCATGACTG 57.948 43.478 0.00 0.00 38.67 3.51
2155 7374 2.749621 CTCTGTTTAGGACAATGTGGGC 59.250 50.000 0.00 0.00 37.93 5.36
2158 7377 4.899502 ACCTCTCTGTTTAGGACAATGTG 58.100 43.478 0.00 0.00 37.93 3.21
2163 7382 4.765856 GTGACTACCTCTCTGTTTAGGACA 59.234 45.833 0.00 0.00 36.66 4.02
2172 7391 0.375454 CGCTCGTGACTACCTCTCTG 59.625 60.000 0.00 0.00 0.00 3.35
2184 7403 1.433053 ATCTCGTCCTCTCGCTCGTG 61.433 60.000 0.00 0.00 0.00 4.35
2210 7429 0.664166 TCGACCGAGGTTGTTTACGC 60.664 55.000 9.19 0.00 0.00 4.42
2212 7431 2.712057 TCTCGACCGAGGTTGTTTAC 57.288 50.000 17.92 0.00 42.20 2.01
2218 7437 1.668101 GAGGCATCTCGACCGAGGTT 61.668 60.000 17.92 5.05 42.20 3.50
2231 7450 2.401583 TAGCAATGTGTTCGAGGCAT 57.598 45.000 0.00 0.00 0.00 4.40
2232 7451 2.076100 CTTAGCAATGTGTTCGAGGCA 58.924 47.619 0.00 0.00 0.00 4.75
2235 7454 4.201628 GCTGTACTTAGCAATGTGTTCGAG 60.202 45.833 0.49 0.00 43.17 4.04
2245 7464 1.345089 TGAACCCGCTGTACTTAGCAA 59.655 47.619 6.07 0.00 43.87 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.