AutoCloner

Multiple sequence alignment - TraesCS2B01G200300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G200300	chr2B	100.000	2567	0	0	1	2567	178776718	178774152	0.000000e+00	4741.0
1	TraesCS2B01G200300	chr2D	93.561	1320	41	17	6	1299	125452596	125451295	0.000000e+00	1927.0
2	TraesCS2B01G200300	chr2D	91.182	567	30	8	1335	1898	125451301	125450752	0.000000e+00	752.0
3	TraesCS2B01G200300	chr2D	95.249	442	18	3	1893	2333	118804687	118804248	0.000000e+00	697.0
4	TraesCS2B01G200300	chr2D	95.833	240	10	0	2328	2567	118802241	118802002	3.100000e-104	388.0
5	TraesCS2B01G200300	chr2D	92.727	55	3	1	1281	1335	125451537	125451484	7.620000e-11	78.7
6	TraesCS2B01G200300	chr5D	94.853	680	31	4	1889	2567	382017579	382016903	0.000000e+00	1059.0
7	TraesCS2B01G200300	chr7A	93.285	685	37	5	1889	2567	729057203	729056522	0.000000e+00	1002.0
8	TraesCS2B01G200300	chr2A	91.975	648	33	5	666	1299	131850927	131850285	0.000000e+00	891.0
9	TraesCS2B01G200300	chr2A	89.927	546	31	14	1340	1871	131850286	131849751	0.000000e+00	682.0
10	TraesCS2B01G200300	chr2A	92.143	280	21	1	24	303	131852315	131852037	6.660000e-106	394.0
11	TraesCS2B01G200300	chr2A	89.474	171	12	5	299	466	131851662	131851495	7.200000e-51	211.0
12	TraesCS2B01G200300	chr6B	89.744	390	21	10	1893	2276	255101566	255101190	4.970000e-132	481.0
13	TraesCS2B01G200300	chr6B	89.873	158	15	1	1354	1510	409345211	409345368	4.330000e-48	202.0
14	TraesCS2B01G200300	chr6B	97.297	111	3	0	2154	2264	255101229	255101119	3.370000e-44	189.0
15	TraesCS2B01G200300	chr6B	85.915	71	7	1	2347	2417	213157637	213157570	3.540000e-09	73.1
16	TraesCS2B01G200300	chr4B	94.025	318	16	3	1894	2211	508484445	508484759	1.790000e-131	479.0
17	TraesCS2B01G200300	chr4B	92.035	339	24	3	1893	2230	526168389	526168725	8.310000e-130	473.0
18	TraesCS2B01G200300	chr4B	89.091	220	22	1	2227	2446	526206801	526207018	3.250000e-69	272.0
19	TraesCS2B01G200300	chr4B	92.857	112	7	1	2154	2264	508484807	508484918	7.350000e-36	161.0
20	TraesCS2B01G200300	chr5A	91.014	345	29	2	1167	1510	219364567	219364224	5.000000e-127	464.0
21	TraesCS2B01G200300	chr5A	88.055	293	35	0	929	1221	219364692	219364400	5.260000e-92	348.0
22	TraesCS2B01G200300	chr5A	93.478	46	3	0	1290	1335	219364559	219364514	4.580000e-08	69.4
23	TraesCS2B01G200300	chr7B	97.321	112	1	1	1894	2003	244641042	244641153	3.370000e-44	189.0
24	TraesCS2B01G200300	chr7B	93.548	93	6	0	2155	2247	112589775	112589867	3.440000e-29	139.0
25	TraesCS2B01G200300	chr7B	95.556	45	1	1	2371	2415	126787071	126787114	1.270000e-08	71.3
26	TraesCS2B01G200300	chr4D	88.800	125	13	1	2370	2493	216746444	216746568	4.420000e-33	152.0
27	TraesCS2B01G200300	chr4D	95.652	46	2	0	2370	2415	124258796	124258751	9.850000e-10	75.0
28	TraesCS2B01G200300	chr1D	93.617	47	3	0	2370	2416	11316632	11316678	1.270000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G200300	chr2B	178774152	178776718	2566	True	4741.000000	4741	100.00000	1	2567	1	chr2B.!!$R1	2566
1	TraesCS2B01G200300	chr2D	125450752	125452596	1844	True	919.233333	1927	92.49000	6	1898	3	chr2D.!!$R2	1892
2	TraesCS2B01G200300	chr2D	118802002	118804687	2685	True	542.500000	697	95.54100	1893	2567	2	chr2D.!!$R1	674
3	TraesCS2B01G200300	chr5D	382016903	382017579	676	True	1059.000000	1059	94.85300	1889	2567	1	chr5D.!!$R1	678
4	TraesCS2B01G200300	chr7A	729056522	729057203	681	True	1002.000000	1002	93.28500	1889	2567	1	chr7A.!!$R1	678
5	TraesCS2B01G200300	chr2A	131849751	131852315	2564	True	544.500000	891	90.87975	24	1871	4	chr2A.!!$R1	1847

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
149	150	0.934496	TTCTCTGTTTTGTGGTCGCG	59.066	50.0	0.0	0.0	0.0	5.87	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1598	2382	0.596341	CGAAACAAAGCAAACGGGGG	60.596	55.0	0.0	0.0	0.0	5.4	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
47	48	8.535690	AGACAAGTAATTTTAGACGGAGAAAG	57.464	34.615	0.00	0.00	0.00	2.62
101	102	5.758296	AGTATCAACTTGAAATGTGACACGT	59.242	36.000	0.22	0.00	29.00	4.49
149	150	0.934496	TTCTCTGTTTTGTGGTCGCG	59.066	50.000	0.00	0.00	0.00	5.87
503	987	7.669089	AAAAAGAAGGGGAAACAAATAGTCA	57.331	32.000	0.00	0.00	0.00	3.41
565	1049	5.185635	CCACCATGTATTGAGGACATTTTGT	59.814	40.000	0.00	0.00	35.31	2.83
600	1084	9.249053	TGTAACTGCCTCAATATGGAATAAAAA	57.751	29.630	0.00	0.00	29.06	1.94
616	1100	3.401033	AAAAATCCTTTTTCCCCAGCG	57.599	42.857	0.00	0.00	38.39	5.18
617	1101	2.302587	AAATCCTTTTTCCCCAGCGA	57.697	45.000	0.00	0.00	0.00	4.93
622	1106	2.969262	TCCTTTTTCCCCAGCGAAAAAT	59.031	40.909	9.06	0.00	45.71	1.82
635	1119	7.438160	CCCCAGCGAAAAATAGGAAATAAATTC	59.562	37.037	0.00	0.00	37.31	2.17
636	1120	7.978975	CCCAGCGAAAAATAGGAAATAAATTCA	59.021	33.333	0.00	0.00	39.98	2.57
897	1670	2.941064	TCAAGGTCGTCGTCTAGGTATG	59.059	50.000	0.00	0.00	0.00	2.39
921	1694	3.624900	TCACCTTCGTCGCTATAAATCG	58.375	45.455	0.00	0.00	0.00	3.34
954	1731	2.030363	CGTCTCATCCATCTAGTGAGGC	60.030	54.545	7.29	5.00	40.31	4.70
1006	1790	1.128692	GAAAACCAGGCGAGATGAACG	59.871	52.381	0.00	0.00	0.00	3.95
1030	1814	2.756283	ACCTCCTCTTCTCCGGCG	60.756	66.667	0.00	0.00	0.00	6.46
1036	1820	2.670592	TCTTCTCCGGCGTCGACA	60.671	61.111	12.93	0.00	39.00	4.35
1098	1882	4.832608	GCCAAGCCGTACCTCCCG	62.833	72.222	0.00	0.00	0.00	5.14
1122	1906	2.279582	AGCTAACCGAGATGAACACG	57.720	50.000	0.00	0.00	0.00	4.49
1200	1984	1.008995	CACCGTTTCGTTGGCCAAG	60.009	57.895	21.21	13.36	0.00	3.61
1212	1996	3.712907	GCCAAGCCGTACCTCCCA	61.713	66.667	0.00	0.00	0.00	4.37
1258	2042	1.583967	GACATCGTCGCAGGTCTCG	60.584	63.158	0.00	0.00	0.00	4.04
1278	2062	2.190981	GGCTACGTCAAGAACCATACG	58.809	52.381	0.00	0.00	40.99	3.06
1279	2063	2.190981	GCTACGTCAAGAACCATACGG	58.809	52.381	0.00	0.00	39.57	4.02
1280	2064	2.805845	CTACGTCAAGAACCATACGGG	58.194	52.381	0.00	0.00	44.81	5.28
1296	2080	4.554036	GGAGCGGCCATGGTCTCC	62.554	72.222	24.20	24.20	38.40	3.71
1297	2081	3.785859	GAGCGGCCATGGTCTCCA	61.786	66.667	15.80	0.00	38.19	3.86
1298	2082	4.101448	AGCGGCCATGGTCTCCAC	62.101	66.667	15.80	0.42	35.80	4.02
1307	2091	3.363351	GGTCTCCACCGTCTCGTT	58.637	61.111	0.00	0.00	31.06	3.85
1308	2092	1.080705	GGTCTCCACCGTCTCGTTG	60.081	63.158	0.00	0.00	31.06	4.10
1309	2093	1.080705	GTCTCCACCGTCTCGTTGG	60.081	63.158	0.00	0.00	0.00	3.77
1310	2094	2.432628	CTCCACCGTCTCGTTGGC	60.433	66.667	1.03	0.00	0.00	4.52
1311	2095	3.934391	CTCCACCGTCTCGTTGGCC	62.934	68.421	0.00	0.00	0.00	5.36
1312	2096	4.308458	CCACCGTCTCGTTGGCCA	62.308	66.667	0.00	0.00	0.00	5.36
1313	2097	2.280524	CACCGTCTCGTTGGCCAA	60.281	61.111	16.05	16.05	0.00	4.52
1314	2098	2.030562	ACCGTCTCGTTGGCCAAG	59.969	61.111	21.21	13.36	0.00	3.61
1315	2099	3.423154	CCGTCTCGTTGGCCAAGC	61.423	66.667	21.21	13.00	0.00	4.01
1332	2116	3.124921	CCGTACCTGCCCGCAAAG	61.125	66.667	0.00	0.00	0.00	2.77
1333	2117	3.799755	CGTACCTGCCCGCAAAGC	61.800	66.667	0.00	0.00	0.00	3.51
1334	2118	2.359975	GTACCTGCCCGCAAAGCT	60.360	61.111	0.00	0.00	0.00	3.74
1335	2119	2.046314	TACCTGCCCGCAAAGCTC	60.046	61.111	0.00	0.00	0.00	4.09
1336	2120	2.592993	TACCTGCCCGCAAAGCTCT	61.593	57.895	0.00	0.00	0.00	4.09
1337	2121	2.521958	TACCTGCCCGCAAAGCTCTC	62.522	60.000	0.00	0.00	0.00	3.20
1338	2122	3.130160	CTGCCCGCAAAGCTCTCC	61.130	66.667	0.00	0.00	0.00	3.71
1344	2128	3.793144	GCAAAGCTCTCCACGCGG	61.793	66.667	12.47	0.00	0.00	6.46
1579	2363	1.202710	TCGTGTAGGGAAGCAAGCAAA	60.203	47.619	0.00	0.00	0.00	3.68
1590	2374	3.977244	AAGCAAACGCGCCCCTTG	61.977	61.111	5.73	6.23	0.00	3.61
1598	2382	2.110006	GCGCCCCTTGGATCTCTC	59.890	66.667	0.00	0.00	0.00	3.20
1618	2402	1.212455	CCCCGTTTGCTTTGTTTCGC	61.212	55.000	0.00	0.00	0.00	4.70
1622	2406	1.701431	CGTTTGCTTTGTTTCGCGTAG	59.299	47.619	5.77	0.00	0.00	3.51
1637	2423	5.194199	TCGCGTAGTGTGTTTAATTAAGC	57.806	39.130	5.77	5.19	40.08	3.09
1671	2458	8.454859	ACTATATGGTGGTTCATTCCATCTAT	57.545	34.615	0.00	0.00	41.45	1.98
1672	2459	8.894592	ACTATATGGTGGTTCATTCCATCTATT	58.105	33.333	0.00	0.00	41.45	1.73
1673	2460	9.388506	CTATATGGTGGTTCATTCCATCTATTC	57.611	37.037	0.00	0.00	41.45	1.75
1674	2461	5.715439	TGGTGGTTCATTCCATCTATTCT	57.285	39.130	0.00	0.00	39.19	2.40
1675	2462	6.823286	TGGTGGTTCATTCCATCTATTCTA	57.177	37.500	0.00	0.00	39.19	2.10
1676	2463	6.591935	TGGTGGTTCATTCCATCTATTCTAC	58.408	40.000	0.00	0.00	39.19	2.59
1677	2464	6.386927	TGGTGGTTCATTCCATCTATTCTACT	59.613	38.462	0.00	0.00	39.19	2.57
1678	2465	6.708054	GGTGGTTCATTCCATCTATTCTACTG	59.292	42.308	0.00	0.00	39.81	2.74
1683	2470	7.839680	TCATTCCATCTATTCTACTGCTGTA	57.160	36.000	3.25	3.25	0.00	2.74
1687	2474	8.706322	TTCCATCTATTCTACTGCTGTATACA	57.294	34.615	5.25	5.25	0.00	2.29
1714	2505	3.997064	CTTGCCGTGGGAGCGAGAG	62.997	68.421	0.00	0.00	43.35	3.20
1717	2508	2.492090	CCGTGGGAGCGAGAGAAG	59.508	66.667	0.00	0.00	0.00	2.85
1718	2509	2.046864	CCGTGGGAGCGAGAGAAGA	61.047	63.158	0.00	0.00	0.00	2.87
1719	2510	1.388065	CCGTGGGAGCGAGAGAAGAT	61.388	60.000	0.00	0.00	0.00	2.40
1720	2511	0.248825	CGTGGGAGCGAGAGAAGATG	60.249	60.000	0.00	0.00	0.00	2.90
1737	2528	2.305927	AGATGGGGGTGATAATAAGCGG	59.694	50.000	0.00	0.00	0.00	5.52
1752	2543	2.202440	CGGTGCCTCGTACTCGTG	60.202	66.667	0.00	0.00	38.33	4.35
1756	2547	0.782384	GTGCCTCGTACTCGTGTTTG	59.218	55.000	0.00	0.00	38.33	2.93
1769	2560	2.225491	TCGTGTTTGCCATTGTTCTAGC	59.775	45.455	0.00	0.00	0.00	3.42
1821	2615	2.125673	GCAATTGCTGGCTGCTGG	60.126	61.111	23.21	5.53	43.37	4.85
1857	2658	4.686091	TCTCAGTTCATGTGTCGAATTGTC	59.314	41.667	0.00	0.00	33.29	3.18
1879	2680	9.778741	TTGTCCCTATATTGTTATGATTCTGTC	57.221	33.333	0.00	0.00	0.00	3.51
1889	2690	7.625828	TGTTATGATTCTGTCGTCTCTTCTA	57.374	36.000	0.00	0.00	0.00	2.10
1898	2699	7.350744	TCTGTCGTCTCTTCTATAGTACTCT	57.649	40.000	0.00	0.00	0.00	3.24
1917	2718	6.461110	ACTCTCTCCGTTCCGAAATAATTA	57.539	37.500	0.00	0.00	0.00	1.40
1980	2781	0.893727	TCTCCGCTTTCCCCTTTTGC	60.894	55.000	0.00	0.00	0.00	3.68
2146	2948	2.134287	CGGATGAGGACGACCCCAT	61.134	63.158	0.00	0.00	36.73	4.00
2251	3058	3.171388	CCAATCCCCTCCTCCGGG	61.171	72.222	0.00	0.00	44.27	5.73
2286	3093	1.102809	CACCACCAGAAGCAGCACAA	61.103	55.000	0.00	0.00	0.00	3.33
2375	5194	2.679336	GTGATATTTTTACACGGGCGGT	59.321	45.455	0.00	0.00	0.00	5.68
2411	5230	2.841988	GAGCAGCGGGAGGAGGAT	60.842	66.667	0.00	0.00	0.00	3.24
2455	5274	3.184683	CCTGCTGTCGAGAAGCGC	61.185	66.667	13.71	0.00	43.88	5.92

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
47	48	3.306973	GGGACGTAGCGGTAAAAACATAC	59.693	47.826	0.00	0.00	0.00	2.39
149	150	1.000506	TCTTTCACCTGCTACCACGAC	59.999	52.381	0.00	0.00	0.00	4.34
491	972	8.046708	TGGCACACTCTATATGACTATTTGTTT	58.953	33.333	0.00	0.00	0.00	2.83
565	1049	2.085320	GAGGCAGTTACAGTCGAGAGA	58.915	52.381	0.00	0.00	38.16	3.10
600	1084	2.302587	TTTCGCTGGGGAAAAAGGAT	57.697	45.000	9.76	0.00	33.23	3.24
657	1141	4.828072	AAGATCTGTAGAAGTTCACCCC	57.172	45.455	5.50	0.00	0.00	4.95
815	1575	3.752747	CACAGCACTAATCATGTCACCAA	59.247	43.478	0.00	0.00	0.00	3.67
897	1670	3.637998	TTATAGCGACGAAGGTGATCC	57.362	47.619	0.00	0.00	0.00	3.36
927	1700	0.383590	AGATGGATGAGACGACGCAG	59.616	55.000	0.00	0.00	0.00	5.18
954	1731	5.186021	ACTTGTGGTTATCTGTCTGGACTAG	59.814	44.000	2.38	0.00	0.00	2.57
1006	1790	2.507324	GAAGAGGAGGTCGCGTGC	60.507	66.667	5.77	0.00	0.00	5.34
1030	1814	1.125021	CTGTTGCTTGACGATGTCGAC	59.875	52.381	9.11	9.11	43.02	4.20
1036	1820	1.005037	TCGCCTGTTGCTTGACGAT	60.005	52.632	0.00	0.00	38.05	3.73
1098	1882	2.024176	TCATCTCGGTTAGCTTTGCC	57.976	50.000	0.00	0.00	0.00	4.52
1200	1984	2.125106	CTTGCTGGGAGGTACGGC	60.125	66.667	0.00	0.00	40.60	5.68
1202	1986	2.125106	GCCTTGCTGGGAGGTACG	60.125	66.667	0.00	0.00	36.63	3.67
1209	1993	2.438434	CCGGTAAGCCTTGCTGGG	60.438	66.667	12.24	1.11	39.62	4.45
1212	1996	1.224592	CATCCCGGTAAGCCTTGCT	59.775	57.895	0.00	0.00	42.56	3.91
1258	2042	2.190981	CGTATGGTTCTTGACGTAGCC	58.809	52.381	0.00	0.00	0.00	3.93
1278	2062	4.554036	GAGACCATGGCCGCTCCC	62.554	72.222	13.04	0.00	0.00	4.30
1279	2063	4.554036	GGAGACCATGGCCGCTCC	62.554	72.222	24.72	24.72	40.04	4.70
1280	2064	3.785859	TGGAGACCATGGCCGCTC	61.786	66.667	13.04	15.72	0.00	5.03
1296	2080	2.280524	TTGGCCAACGAGACGGTG	60.281	61.111	16.05	2.08	44.86	4.94
1297	2081	2.030562	CTTGGCCAACGAGACGGT	59.969	61.111	16.05	0.00	31.73	4.83
1298	2082	3.423154	GCTTGGCCAACGAGACGG	61.423	66.667	16.05	3.91	31.73	4.79
1315	2099	3.124921	CTTTGCGGGCAGGTACGG	61.125	66.667	0.00	0.00	0.00	4.02
1316	2100	3.799755	GCTTTGCGGGCAGGTACG	61.800	66.667	0.00	0.00	0.00	3.67
1317	2101	2.359975	AGCTTTGCGGGCAGGTAC	60.360	61.111	0.00	0.00	0.00	3.34
1318	2102	2.046314	GAGCTTTGCGGGCAGGTA	60.046	61.111	0.00	0.00	0.00	3.08
1319	2103	3.909086	GAGAGCTTTGCGGGCAGGT	62.909	63.158	0.00	0.00	0.00	4.00
1320	2104	3.130160	GAGAGCTTTGCGGGCAGG	61.130	66.667	0.00	0.00	0.00	4.85
1321	2105	3.130160	GGAGAGCTTTGCGGGCAG	61.130	66.667	0.00	0.00	0.00	4.85
1322	2106	3.952508	TGGAGAGCTTTGCGGGCA	61.953	61.111	0.00	0.00	0.00	5.36
1323	2107	3.435186	GTGGAGAGCTTTGCGGGC	61.435	66.667	0.00	0.00	0.00	6.13
1324	2108	3.121030	CGTGGAGAGCTTTGCGGG	61.121	66.667	0.00	0.00	0.00	6.13
1325	2109	3.793144	GCGTGGAGAGCTTTGCGG	61.793	66.667	0.00	0.00	0.00	5.69
1326	2110	4.139420	CGCGTGGAGAGCTTTGCG	62.139	66.667	0.00	0.00	39.57	4.85
1327	2111	3.793144	CCGCGTGGAGAGCTTTGC	61.793	66.667	10.20	0.00	37.49	3.68
1328	2112	3.121030	CCCGCGTGGAGAGCTTTG	61.121	66.667	18.79	0.00	37.49	2.77
1329	2113	3.311110	TCCCGCGTGGAGAGCTTT	61.311	61.111	18.79	0.00	38.61	3.51
1330	2114	4.070552	GTCCCGCGTGGAGAGCTT	62.071	66.667	18.79	0.00	46.38	3.74
1359	2143	4.467084	ATGACCATCGCCGCGGTT	62.467	61.111	28.70	9.47	34.99	4.44
1557	2341	1.202710	TGCTTGCTTCCCTACACGAAA	60.203	47.619	0.00	0.00	0.00	3.46
1579	2363	4.162690	GAGATCCAAGGGGCGCGT	62.163	66.667	8.43	0.00	0.00	6.01
1590	2374	1.153147	GCAAACGGGGGAGAGATCC	60.153	63.158	0.00	0.00	0.00	3.36
1598	2382	0.596341	CGAAACAAAGCAAACGGGGG	60.596	55.000	0.00	0.00	0.00	5.40
1618	2402	5.107375	ACCACGCTTAATTAAACACACTACG	60.107	40.000	0.00	0.00	0.00	3.51
1622	2406	4.609708	CGAACCACGCTTAATTAAACACAC	59.390	41.667	0.00	0.00	34.51	3.82
1637	2423	2.100252	ACCACCATATAGTCGAACCACG	59.900	50.000	0.00	0.00	44.09	4.94
1683	2470	3.321111	CCACGGCAAGGAGTATACTGTAT	59.679	47.826	10.90	5.53	0.00	2.29
1687	2474	1.120530	CCCACGGCAAGGAGTATACT	58.879	55.000	4.68	4.68	0.00	2.12
1714	2505	4.003648	CGCTTATTATCACCCCCATCTTC	58.996	47.826	0.00	0.00	0.00	2.87
1715	2506	3.244911	CCGCTTATTATCACCCCCATCTT	60.245	47.826	0.00	0.00	0.00	2.40
1717	2508	2.039879	ACCGCTTATTATCACCCCCATC	59.960	50.000	0.00	0.00	0.00	3.51
1718	2509	2.062636	ACCGCTTATTATCACCCCCAT	58.937	47.619	0.00	0.00	0.00	4.00
1719	2510	1.142060	CACCGCTTATTATCACCCCCA	59.858	52.381	0.00	0.00	0.00	4.96
1720	2511	1.892209	CACCGCTTATTATCACCCCC	58.108	55.000	0.00	0.00	0.00	5.40
1737	2528	0.782384	CAAACACGAGTACGAGGCAC	59.218	55.000	0.00	0.00	42.66	5.01
1752	2543	3.874392	ATGGCTAGAACAATGGCAAAC	57.126	42.857	0.00	0.00	39.59	2.93
1756	2547	2.493278	ACACAATGGCTAGAACAATGGC	59.507	45.455	0.00	0.00	0.00	4.40
1769	2560	2.772568	TCGCAAACAGAACACAATGG	57.227	45.000	0.00	0.00	0.00	3.16
1821	2615	4.569943	TGAACTGAGAATACAGCAGGAAC	58.430	43.478	0.00	0.00	41.06	3.62
1857	2658	8.307483	AGACGACAGAATCATAACAATATAGGG	58.693	37.037	0.00	0.00	0.00	3.53
1879	2680	5.860182	CGGAGAGAGTACTATAGAAGAGACG	59.140	48.000	6.78	0.00	0.00	4.18
2146	2948	1.749638	GAGGAAGAGGCGGTCTCGA	60.750	63.158	3.61	0.00	46.82	4.04
2225	3032	2.776963	GGGGATTGGGACGGGGAT	60.777	66.667	0.00	0.00	0.00	3.85
2264	3071	3.730761	CTGCTTCTGGTGGTGCGC	61.731	66.667	0.00	0.00	0.00	6.09
2375	5194	3.381983	AGCACGGATCGAGCACCA	61.382	61.111	1.84	0.00	45.01	4.17
2425	5244	2.037772	GACAGCAGGGAAGAACAGAAGA	59.962	50.000	0.00	0.00	0.00	2.87

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.