Multiple sequence alignment - TraesCS2B01G200100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G200100 chr2B 100.000 3110 0 0 1 3110 178729819 178732928 0.000000e+00 5744.0
1 TraesCS2B01G200100 chr2B 93.535 727 33 2 2384 3110 451484990 451485702 0.000000e+00 1070.0
2 TraesCS2B01G200100 chr2B 91.973 735 26 6 2386 3110 183540041 183540752 0.000000e+00 1000.0
3 TraesCS2B01G200100 chr2B 98.458 389 6 0 1 389 103747636 103748024 0.000000e+00 686.0
4 TraesCS2B01G200100 chr2B 98.458 389 6 0 1 389 720868366 720868754 0.000000e+00 686.0
5 TraesCS2B01G200100 chr2B 97.250 400 10 1 1 400 233525752 233525354 0.000000e+00 676.0
6 TraesCS2B01G200100 chr2B 94.426 305 16 1 2385 2689 178758753 178758450 4.700000e-128 468.0
7 TraesCS2B01G200100 chr2B 91.447 304 25 1 2386 2689 451517173 451516871 1.730000e-112 416.0
8 TraesCS2B01G200100 chr2B 75.178 842 174 29 1233 2061 759176396 759175577 6.340000e-97 364.0
9 TraesCS2B01G200100 chr2B 77.394 376 63 13 1248 1612 64864127 64863763 1.460000e-48 204.0
10 TraesCS2B01G200100 chr2D 91.234 1791 101 32 389 2131 125342997 125344779 0.000000e+00 2386.0
11 TraesCS2B01G200100 chr2D 78.878 303 51 12 1247 1541 37245365 37245662 3.170000e-45 193.0
12 TraesCS2B01G200100 chr2A 93.023 1161 50 16 982 2131 131711112 131712252 0.000000e+00 1666.0
13 TraesCS2B01G200100 chr2A 88.871 611 38 12 390 987 131710417 131711010 0.000000e+00 725.0
14 TraesCS2B01G200100 chr2A 75.233 860 166 36 1244 2084 24002389 24003220 6.340000e-97 364.0
15 TraesCS2B01G200100 chr2A 84.979 233 20 8 2150 2368 131712238 131712469 4.040000e-54 222.0
16 TraesCS2B01G200100 chr2A 79.927 274 44 8 1291 1557 42027458 42027189 1.140000e-44 191.0
17 TraesCS2B01G200100 chr2A 79.562 274 47 6 1292 1559 679971755 679971485 1.470000e-43 187.0
18 TraesCS2B01G200100 chr7A 94.945 732 27 3 2388 3110 299415306 299416036 0.000000e+00 1138.0
19 TraesCS2B01G200100 chr7A 75.995 779 151 25 1284 2050 46911007 46911761 1.360000e-98 370.0
20 TraesCS2B01G200100 chr7A 74.934 379 84 9 1724 2098 163915913 163916284 2.480000e-36 163.0
21 TraesCS2B01G200100 chr7B 94.759 725 24 2 2386 3110 600461270 600461980 0.000000e+00 1116.0
22 TraesCS2B01G200100 chr6B 94.005 734 29 4 2386 3110 225314117 225314844 0.000000e+00 1098.0
23 TraesCS2B01G200100 chr6B 93.989 732 26 4 2386 3110 536839746 536839026 0.000000e+00 1092.0
24 TraesCS2B01G200100 chr6B 94.079 304 17 1 2386 2689 646740643 646740341 7.860000e-126 460.0
25 TraesCS2B01G200100 chr6B 93.548 310 12 3 2386 2689 225321896 225321589 3.660000e-124 455.0
26 TraesCS2B01G200100 chr6B 91.475 305 23 3 2386 2689 387917479 387917781 1.730000e-112 416.0
27 TraesCS2B01G200100 chr6A 93.741 735 25 4 2386 3110 175630095 175630818 0.000000e+00 1083.0
28 TraesCS2B01G200100 chr3A 93.478 736 33 4 2386 3110 171625547 171626278 0.000000e+00 1079.0
29 TraesCS2B01G200100 chr5B 93.906 722 30 2 2389 3110 434055860 434055153 0.000000e+00 1077.0
30 TraesCS2B01G200100 chr5B 98.458 389 6 0 1 389 611357244 611357632 0.000000e+00 686.0
31 TraesCS2B01G200100 chr7D 90.450 733 48 10 2383 3099 550878349 550879075 0.000000e+00 946.0
32 TraesCS2B01G200100 chr7D 75.400 874 174 29 1233 2093 163010620 163011465 4.870000e-103 385.0
33 TraesCS2B01G200100 chr4B 97.985 397 7 1 1 396 663974473 663974869 0.000000e+00 688.0
34 TraesCS2B01G200100 chr3B 98.214 392 7 0 1 392 142083727 142084118 0.000000e+00 686.0
35 TraesCS2B01G200100 chr3B 98.458 389 6 0 1 389 404904915 404904527 0.000000e+00 686.0
36 TraesCS2B01G200100 chr3B 98.210 391 7 0 1 391 404898036 404897646 0.000000e+00 684.0
37 TraesCS2B01G200100 chr3B 97.487 398 10 0 1 398 648760815 648761212 0.000000e+00 680.0
38 TraesCS2B01G200100 chr1A 77.273 638 123 17 1294 1923 11530446 11531069 3.810000e-94 355.0
39 TraesCS2B01G200100 chr1A 72.493 349 81 13 1716 2061 540414376 540414712 7.100000e-17 99.0
40 TraesCS2B01G200100 chr1B 73.759 282 68 6 1682 1960 606306051 606305773 4.240000e-19 106.0
41 TraesCS2B01G200100 chr1D 73.944 284 58 15 1682 1957 445187629 445187354 1.970000e-17 100.0
42 TraesCS2B01G200100 chr1D 77.070 157 31 5 1700 1854 445222772 445222925 5.530000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G200100 chr2B 178729819 178732928 3109 False 5744 5744 100.000000 1 3110 1 chr2B.!!$F2 3109
1 TraesCS2B01G200100 chr2B 451484990 451485702 712 False 1070 1070 93.535000 2384 3110 1 chr2B.!!$F4 726
2 TraesCS2B01G200100 chr2B 183540041 183540752 711 False 1000 1000 91.973000 2386 3110 1 chr2B.!!$F3 724
3 TraesCS2B01G200100 chr2B 759175577 759176396 819 True 364 364 75.178000 1233 2061 1 chr2B.!!$R5 828
4 TraesCS2B01G200100 chr2D 125342997 125344779 1782 False 2386 2386 91.234000 389 2131 1 chr2D.!!$F2 1742
5 TraesCS2B01G200100 chr2A 131710417 131712469 2052 False 871 1666 88.957667 390 2368 3 chr2A.!!$F2 1978
6 TraesCS2B01G200100 chr2A 24002389 24003220 831 False 364 364 75.233000 1244 2084 1 chr2A.!!$F1 840
7 TraesCS2B01G200100 chr7A 299415306 299416036 730 False 1138 1138 94.945000 2388 3110 1 chr7A.!!$F3 722
8 TraesCS2B01G200100 chr7A 46911007 46911761 754 False 370 370 75.995000 1284 2050 1 chr7A.!!$F1 766
9 TraesCS2B01G200100 chr7B 600461270 600461980 710 False 1116 1116 94.759000 2386 3110 1 chr7B.!!$F1 724
10 TraesCS2B01G200100 chr6B 225314117 225314844 727 False 1098 1098 94.005000 2386 3110 1 chr6B.!!$F1 724
11 TraesCS2B01G200100 chr6B 536839026 536839746 720 True 1092 1092 93.989000 2386 3110 1 chr6B.!!$R2 724
12 TraesCS2B01G200100 chr6A 175630095 175630818 723 False 1083 1083 93.741000 2386 3110 1 chr6A.!!$F1 724
13 TraesCS2B01G200100 chr3A 171625547 171626278 731 False 1079 1079 93.478000 2386 3110 1 chr3A.!!$F1 724
14 TraesCS2B01G200100 chr5B 434055153 434055860 707 True 1077 1077 93.906000 2389 3110 1 chr5B.!!$R1 721
15 TraesCS2B01G200100 chr7D 550878349 550879075 726 False 946 946 90.450000 2383 3099 1 chr7D.!!$F2 716
16 TraesCS2B01G200100 chr7D 163010620 163011465 845 False 385 385 75.400000 1233 2093 1 chr7D.!!$F1 860
17 TraesCS2B01G200100 chr1A 11530446 11531069 623 False 355 355 77.273000 1294 1923 1 chr1A.!!$F1 629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
36 37 0.035820 GGTATCCGGGAGTTGCACAA 60.036 55.000 0.0 0.0 0.0 3.33 F
39 40 0.620556 ATCCGGGAGTTGCACAATCT 59.379 50.000 0.0 0.0 0.0 2.40 F
620 629 1.004745 CACCCTAAGCCCTGACAACAT 59.995 52.381 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1001 1142 0.394192 CAGGCTGACACTTCCACTCA 59.606 55.000 9.42 0.0 0.00 3.41 R
1039 1184 2.126307 TCGCGAGCAGAGAAGTGC 60.126 61.111 3.71 0.0 44.35 4.40 R
2147 2316 0.101759 AATCACGCATGCTGATTGCC 59.898 50.000 28.87 0.0 42.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.569873 ACCCAAAGCATTCCTACGG 57.430 52.632 0.00 0.00 0.00 4.02
19 20 0.696501 ACCCAAAGCATTCCTACGGT 59.303 50.000 0.00 0.00 0.00 4.83
20 21 1.910671 ACCCAAAGCATTCCTACGGTA 59.089 47.619 0.00 0.00 0.00 4.02
21 22 2.508300 ACCCAAAGCATTCCTACGGTAT 59.492 45.455 0.00 0.00 0.00 2.73
22 23 3.139077 CCCAAAGCATTCCTACGGTATC 58.861 50.000 0.00 0.00 0.00 2.24
23 24 3.139077 CCAAAGCATTCCTACGGTATCC 58.861 50.000 0.00 0.00 0.00 2.59
33 34 2.897207 CGGTATCCGGGAGTTGCA 59.103 61.111 0.00 0.00 44.15 4.08
34 35 1.520787 CGGTATCCGGGAGTTGCAC 60.521 63.158 0.00 0.00 44.15 4.57
35 36 1.600107 GGTATCCGGGAGTTGCACA 59.400 57.895 0.00 0.00 0.00 4.57
36 37 0.035820 GGTATCCGGGAGTTGCACAA 60.036 55.000 0.00 0.00 0.00 3.33
37 38 1.408266 GGTATCCGGGAGTTGCACAAT 60.408 52.381 0.00 0.00 0.00 2.71
38 39 1.940613 GTATCCGGGAGTTGCACAATC 59.059 52.381 0.00 0.00 0.00 2.67
39 40 0.620556 ATCCGGGAGTTGCACAATCT 59.379 50.000 0.00 0.00 0.00 2.40
40 41 1.271856 TCCGGGAGTTGCACAATCTA 58.728 50.000 0.00 0.00 0.00 1.98
41 42 1.626321 TCCGGGAGTTGCACAATCTAA 59.374 47.619 0.00 0.00 0.00 2.10
42 43 2.238646 TCCGGGAGTTGCACAATCTAAT 59.761 45.455 0.00 0.00 0.00 1.73
43 44 2.355756 CCGGGAGTTGCACAATCTAATG 59.644 50.000 0.00 0.00 0.00 1.90
44 45 2.355756 CGGGAGTTGCACAATCTAATGG 59.644 50.000 0.00 0.00 0.00 3.16
45 46 3.356290 GGGAGTTGCACAATCTAATGGT 58.644 45.455 0.00 0.00 0.00 3.55
46 47 3.378427 GGGAGTTGCACAATCTAATGGTC 59.622 47.826 0.00 0.00 0.00 4.02
47 48 4.265073 GGAGTTGCACAATCTAATGGTCT 58.735 43.478 0.00 0.00 0.00 3.85
48 49 5.428253 GGAGTTGCACAATCTAATGGTCTA 58.572 41.667 0.00 0.00 0.00 2.59
49 50 5.880332 GGAGTTGCACAATCTAATGGTCTAA 59.120 40.000 0.00 0.00 0.00 2.10
50 51 6.037610 GGAGTTGCACAATCTAATGGTCTAAG 59.962 42.308 0.00 0.00 0.00 2.18
51 52 5.882557 AGTTGCACAATCTAATGGTCTAAGG 59.117 40.000 0.00 0.00 0.00 2.69
52 53 5.692115 TGCACAATCTAATGGTCTAAGGA 57.308 39.130 0.00 0.00 0.00 3.36
53 54 6.061022 TGCACAATCTAATGGTCTAAGGAA 57.939 37.500 0.00 0.00 0.00 3.36
54 55 6.480763 TGCACAATCTAATGGTCTAAGGAAA 58.519 36.000 0.00 0.00 0.00 3.13
55 56 7.118723 TGCACAATCTAATGGTCTAAGGAAAT 58.881 34.615 0.00 0.00 0.00 2.17
56 57 7.067372 TGCACAATCTAATGGTCTAAGGAAATG 59.933 37.037 0.00 0.00 0.00 2.32
57 58 7.283127 GCACAATCTAATGGTCTAAGGAAATGA 59.717 37.037 0.00 0.00 0.00 2.57
58 59 9.347240 CACAATCTAATGGTCTAAGGAAATGAT 57.653 33.333 0.00 0.00 0.00 2.45
65 66 8.738645 AATGGTCTAAGGAAATGATACTTGAC 57.261 34.615 0.00 0.00 0.00 3.18
66 67 7.252612 TGGTCTAAGGAAATGATACTTGACA 57.747 36.000 0.00 0.00 30.76 3.58
67 68 7.861629 TGGTCTAAGGAAATGATACTTGACAT 58.138 34.615 0.00 0.00 30.76 3.06
68 69 8.328758 TGGTCTAAGGAAATGATACTTGACATT 58.671 33.333 0.00 0.00 38.18 2.71
69 70 9.832445 GGTCTAAGGAAATGATACTTGACATTA 57.168 33.333 0.00 0.00 35.99 1.90
76 77 9.508567 GGAAATGATACTTGACATTAGAAAAGC 57.491 33.333 0.00 0.00 35.99 3.51
82 83 9.709600 GATACTTGACATTAGAAAAGCTTTAGC 57.290 33.333 13.10 7.97 42.49 3.09
83 84 7.510549 ACTTGACATTAGAAAAGCTTTAGCA 57.489 32.000 13.10 0.00 45.16 3.49
84 85 8.115490 ACTTGACATTAGAAAAGCTTTAGCAT 57.885 30.769 13.10 0.00 45.16 3.79
85 86 9.231297 ACTTGACATTAGAAAAGCTTTAGCATA 57.769 29.630 13.10 0.54 45.16 3.14
86 87 9.495754 CTTGACATTAGAAAAGCTTTAGCATAC 57.504 33.333 13.10 1.75 45.16 2.39
87 88 7.684670 TGACATTAGAAAAGCTTTAGCATACG 58.315 34.615 13.10 1.72 45.16 3.06
88 89 7.547722 TGACATTAGAAAAGCTTTAGCATACGA 59.452 33.333 13.10 0.00 45.16 3.43
89 90 8.263940 ACATTAGAAAAGCTTTAGCATACGAA 57.736 30.769 13.10 3.87 45.16 3.85
90 91 8.175716 ACATTAGAAAAGCTTTAGCATACGAAC 58.824 33.333 13.10 0.00 45.16 3.95
91 92 7.900782 TTAGAAAAGCTTTAGCATACGAACT 57.099 32.000 13.10 0.00 45.16 3.01
92 93 8.991243 TTAGAAAAGCTTTAGCATACGAACTA 57.009 30.769 13.10 1.92 45.16 2.24
93 94 7.292129 AGAAAAGCTTTAGCATACGAACTAC 57.708 36.000 13.10 0.00 45.16 2.73
94 95 6.872020 AGAAAAGCTTTAGCATACGAACTACA 59.128 34.615 13.10 0.00 45.16 2.74
95 96 6.404712 AAAGCTTTAGCATACGAACTACAC 57.595 37.500 10.72 0.00 45.16 2.90
96 97 4.103357 AGCTTTAGCATACGAACTACACG 58.897 43.478 4.33 0.00 45.16 4.49
97 98 4.100529 GCTTTAGCATACGAACTACACGA 58.899 43.478 0.00 0.00 41.59 4.35
98 99 4.738740 GCTTTAGCATACGAACTACACGAT 59.261 41.667 0.00 0.00 41.59 3.73
99 100 5.108330 GCTTTAGCATACGAACTACACGATC 60.108 44.000 0.00 0.00 41.59 3.69
100 101 5.746307 TTAGCATACGAACTACACGATCT 57.254 39.130 0.00 0.00 34.70 2.75
101 102 4.634184 AGCATACGAACTACACGATCTT 57.366 40.909 0.00 0.00 34.70 2.40
102 103 4.995124 AGCATACGAACTACACGATCTTT 58.005 39.130 0.00 0.00 34.70 2.52
103 104 4.798907 AGCATACGAACTACACGATCTTTG 59.201 41.667 0.00 0.00 34.70 2.77
104 105 4.561606 GCATACGAACTACACGATCTTTGT 59.438 41.667 0.00 2.73 34.70 2.83
105 106 5.498700 GCATACGAACTACACGATCTTTGTG 60.499 44.000 7.01 2.92 42.99 3.33
106 107 2.729882 ACGAACTACACGATCTTTGTGC 59.270 45.455 7.01 0.00 41.03 4.57
107 108 2.987149 CGAACTACACGATCTTTGTGCT 59.013 45.455 7.01 0.00 41.03 4.40
108 109 4.163552 CGAACTACACGATCTTTGTGCTA 58.836 43.478 7.01 0.00 41.03 3.49
109 110 4.263209 CGAACTACACGATCTTTGTGCTAG 59.737 45.833 7.01 7.00 41.03 3.42
110 111 4.111375 ACTACACGATCTTTGTGCTAGG 57.889 45.455 7.01 0.00 41.03 3.02
111 112 1.726853 ACACGATCTTTGTGCTAGGC 58.273 50.000 0.00 0.00 41.03 3.93
112 113 1.276421 ACACGATCTTTGTGCTAGGCT 59.724 47.619 0.00 0.00 41.03 4.58
113 114 2.289694 ACACGATCTTTGTGCTAGGCTT 60.290 45.455 0.00 0.00 41.03 4.35
114 115 3.056107 ACACGATCTTTGTGCTAGGCTTA 60.056 43.478 0.00 0.00 41.03 3.09
115 116 3.553511 CACGATCTTTGTGCTAGGCTTAG 59.446 47.826 0.00 0.00 0.00 2.18
116 117 3.126831 CGATCTTTGTGCTAGGCTTAGG 58.873 50.000 4.88 0.00 0.00 2.69
117 118 3.181475 CGATCTTTGTGCTAGGCTTAGGA 60.181 47.826 4.88 0.00 0.00 2.94
118 119 4.502259 CGATCTTTGTGCTAGGCTTAGGAT 60.502 45.833 4.88 0.00 29.47 3.24
119 120 4.844349 TCTTTGTGCTAGGCTTAGGATT 57.156 40.909 4.88 0.00 29.47 3.01
120 121 4.517285 TCTTTGTGCTAGGCTTAGGATTG 58.483 43.478 4.88 0.00 29.47 2.67
121 122 3.281727 TTGTGCTAGGCTTAGGATTGG 57.718 47.619 4.88 0.00 29.47 3.16
122 123 1.490490 TGTGCTAGGCTTAGGATTGGG 59.510 52.381 4.88 0.00 29.47 4.12
123 124 1.490910 GTGCTAGGCTTAGGATTGGGT 59.509 52.381 4.88 0.00 29.47 4.51
124 125 1.768870 TGCTAGGCTTAGGATTGGGTC 59.231 52.381 4.88 0.00 0.00 4.46
125 126 2.050918 GCTAGGCTTAGGATTGGGTCT 58.949 52.381 4.88 0.00 0.00 3.85
126 127 2.439880 GCTAGGCTTAGGATTGGGTCTT 59.560 50.000 4.88 0.00 0.00 3.01
127 128 3.745797 GCTAGGCTTAGGATTGGGTCTTG 60.746 52.174 4.88 0.00 0.00 3.02
128 129 2.279173 AGGCTTAGGATTGGGTCTTGT 58.721 47.619 0.00 0.00 0.00 3.16
129 130 2.239907 AGGCTTAGGATTGGGTCTTGTC 59.760 50.000 0.00 0.00 0.00 3.18
130 131 2.644676 GCTTAGGATTGGGTCTTGTCC 58.355 52.381 0.00 0.00 0.00 4.02
131 132 2.026262 GCTTAGGATTGGGTCTTGTCCA 60.026 50.000 0.00 0.00 33.12 4.02
132 133 3.372025 GCTTAGGATTGGGTCTTGTCCAT 60.372 47.826 0.00 0.00 33.82 3.41
133 134 4.455606 CTTAGGATTGGGTCTTGTCCATC 58.544 47.826 0.00 0.00 33.82 3.51
134 135 2.278245 AGGATTGGGTCTTGTCCATCA 58.722 47.619 0.00 0.00 33.82 3.07
135 136 2.025887 AGGATTGGGTCTTGTCCATCAC 60.026 50.000 0.00 0.00 33.82 3.06
136 137 2.290896 GGATTGGGTCTTGTCCATCACA 60.291 50.000 0.00 0.00 33.82 3.58
137 138 3.624777 GATTGGGTCTTGTCCATCACAT 58.375 45.455 0.00 0.00 33.90 3.21
138 139 2.787473 TGGGTCTTGTCCATCACATC 57.213 50.000 0.00 0.00 33.90 3.06
139 140 1.984424 TGGGTCTTGTCCATCACATCA 59.016 47.619 0.00 0.00 33.90 3.07
140 141 2.577563 TGGGTCTTGTCCATCACATCAT 59.422 45.455 0.00 0.00 33.90 2.45
141 142 3.010472 TGGGTCTTGTCCATCACATCATT 59.990 43.478 0.00 0.00 33.90 2.57
142 143 3.629398 GGGTCTTGTCCATCACATCATTC 59.371 47.826 0.00 0.00 33.90 2.67
143 144 4.521146 GGTCTTGTCCATCACATCATTCT 58.479 43.478 0.00 0.00 33.90 2.40
144 145 4.574013 GGTCTTGTCCATCACATCATTCTC 59.426 45.833 0.00 0.00 33.90 2.87
145 146 4.574013 GTCTTGTCCATCACATCATTCTCC 59.426 45.833 0.00 0.00 33.90 3.71
146 147 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
147 148 5.662657 TCTTGTCCATCACATCATTCTCCTA 59.337 40.000 0.00 0.00 33.90 2.94
148 149 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
149 150 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
150 151 6.293698 TGTCCATCACATCATTCTCCTAATG 58.706 40.000 0.00 0.00 0.00 1.90
151 152 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
152 153 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
160 161 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
161 162 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
162 163 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
163 164 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
164 165 5.144832 TCTCCTAATGATGTGATCCCGTTA 58.855 41.667 0.00 0.00 0.00 3.18
165 166 5.780282 TCTCCTAATGATGTGATCCCGTTAT 59.220 40.000 0.00 0.00 0.00 1.89
166 167 6.037786 TCCTAATGATGTGATCCCGTTATC 57.962 41.667 0.00 0.00 0.00 1.75
167 168 5.542251 TCCTAATGATGTGATCCCGTTATCA 59.458 40.000 0.00 0.00 33.48 2.15
168 169 6.042666 TCCTAATGATGTGATCCCGTTATCAA 59.957 38.462 0.00 0.00 37.61 2.57
169 170 6.147821 CCTAATGATGTGATCCCGTTATCAAC 59.852 42.308 0.00 0.00 37.61 3.18
190 191 2.812836 ACATCCAATGTCCATGCTCA 57.187 45.000 0.00 0.00 39.92 4.26
191 192 2.651455 ACATCCAATGTCCATGCTCAG 58.349 47.619 0.00 0.00 39.92 3.35
192 193 1.954382 CATCCAATGTCCATGCTCAGG 59.046 52.381 0.00 0.00 0.00 3.86
193 194 1.288188 TCCAATGTCCATGCTCAGGA 58.712 50.000 0.00 0.00 0.00 3.86
194 195 1.634973 TCCAATGTCCATGCTCAGGAA 59.365 47.619 0.00 0.00 36.80 3.36
195 196 2.041485 TCCAATGTCCATGCTCAGGAAA 59.959 45.455 0.00 0.00 36.80 3.13
196 197 2.165030 CCAATGTCCATGCTCAGGAAAC 59.835 50.000 0.00 0.00 36.80 2.78
197 198 2.821378 CAATGTCCATGCTCAGGAAACA 59.179 45.455 0.00 0.00 36.80 2.83
198 199 2.189594 TGTCCATGCTCAGGAAACAG 57.810 50.000 0.00 0.00 36.80 3.16
199 200 1.421268 TGTCCATGCTCAGGAAACAGT 59.579 47.619 0.00 0.00 36.80 3.55
200 201 2.637382 TGTCCATGCTCAGGAAACAGTA 59.363 45.455 0.00 0.00 36.80 2.74
201 202 3.072330 TGTCCATGCTCAGGAAACAGTAA 59.928 43.478 0.00 0.00 36.80 2.24
202 203 3.437049 GTCCATGCTCAGGAAACAGTAAC 59.563 47.826 0.00 0.00 36.80 2.50
203 204 2.749621 CCATGCTCAGGAAACAGTAACC 59.250 50.000 0.00 0.00 0.00 2.85
204 205 3.411446 CATGCTCAGGAAACAGTAACCA 58.589 45.455 0.00 0.00 0.00 3.67
205 206 3.788227 TGCTCAGGAAACAGTAACCAT 57.212 42.857 0.00 0.00 0.00 3.55
206 207 3.674997 TGCTCAGGAAACAGTAACCATC 58.325 45.455 0.00 0.00 0.00 3.51
207 208 3.327757 TGCTCAGGAAACAGTAACCATCT 59.672 43.478 0.00 0.00 0.00 2.90
208 209 4.530553 TGCTCAGGAAACAGTAACCATCTA 59.469 41.667 0.00 0.00 0.00 1.98
209 210 5.189736 TGCTCAGGAAACAGTAACCATCTAT 59.810 40.000 0.00 0.00 0.00 1.98
210 211 6.116126 GCTCAGGAAACAGTAACCATCTATT 58.884 40.000 0.00 0.00 0.00 1.73
211 212 6.037610 GCTCAGGAAACAGTAACCATCTATTG 59.962 42.308 0.00 0.00 0.00 1.90
212 213 7.252612 TCAGGAAACAGTAACCATCTATTGA 57.747 36.000 0.00 0.00 0.00 2.57
213 214 7.861629 TCAGGAAACAGTAACCATCTATTGAT 58.138 34.615 0.00 0.00 0.00 2.57
214 215 7.987458 TCAGGAAACAGTAACCATCTATTGATC 59.013 37.037 0.00 0.00 0.00 2.92
215 216 7.770433 CAGGAAACAGTAACCATCTATTGATCA 59.230 37.037 0.00 0.00 0.00 2.92
216 217 8.328758 AGGAAACAGTAACCATCTATTGATCAA 58.671 33.333 11.26 11.26 0.00 2.57
217 218 8.398665 GGAAACAGTAACCATCTATTGATCAAC 58.601 37.037 11.07 0.00 0.00 3.18
218 219 7.539712 AACAGTAACCATCTATTGATCAACG 57.460 36.000 11.07 5.26 0.00 4.10
219 220 6.873997 ACAGTAACCATCTATTGATCAACGA 58.126 36.000 11.07 10.80 0.00 3.85
220 221 6.980978 ACAGTAACCATCTATTGATCAACGAG 59.019 38.462 11.07 11.28 0.00 4.18
221 222 5.986135 AGTAACCATCTATTGATCAACGAGC 59.014 40.000 11.07 0.00 0.00 5.03
222 223 4.679373 ACCATCTATTGATCAACGAGCT 57.321 40.909 11.07 0.00 0.00 4.09
223 224 5.791336 ACCATCTATTGATCAACGAGCTA 57.209 39.130 11.07 0.00 0.00 3.32
224 225 5.777802 ACCATCTATTGATCAACGAGCTAG 58.222 41.667 11.07 8.38 0.00 3.42
225 226 5.303078 ACCATCTATTGATCAACGAGCTAGT 59.697 40.000 11.07 6.23 0.00 2.57
226 227 5.861251 CCATCTATTGATCAACGAGCTAGTC 59.139 44.000 11.07 0.00 0.00 2.59
227 228 6.442112 CATCTATTGATCAACGAGCTAGTCA 58.558 40.000 11.07 0.00 0.00 3.41
228 229 6.451064 TCTATTGATCAACGAGCTAGTCAA 57.549 37.500 11.07 0.55 0.00 3.18
229 230 6.266323 TCTATTGATCAACGAGCTAGTCAAC 58.734 40.000 11.07 0.00 0.00 3.18
230 231 4.521130 TTGATCAACGAGCTAGTCAACT 57.479 40.909 3.38 0.00 0.00 3.16
231 232 5.638596 TTGATCAACGAGCTAGTCAACTA 57.361 39.130 3.38 0.00 0.00 2.24
232 233 5.236655 TGATCAACGAGCTAGTCAACTAG 57.763 43.478 11.99 11.99 46.63 2.57
233 234 4.941873 TGATCAACGAGCTAGTCAACTAGA 59.058 41.667 19.03 0.00 46.80 2.43
234 235 4.948608 TCAACGAGCTAGTCAACTAGAG 57.051 45.455 19.03 11.89 46.80 2.43
235 236 3.690139 TCAACGAGCTAGTCAACTAGAGG 59.310 47.826 19.03 10.05 46.80 3.69
236 237 2.018515 ACGAGCTAGTCAACTAGAGGC 58.981 52.381 19.03 6.58 46.80 4.70
237 238 2.294074 CGAGCTAGTCAACTAGAGGCT 58.706 52.381 19.03 10.84 46.80 4.58
238 239 2.685897 CGAGCTAGTCAACTAGAGGCTT 59.314 50.000 19.03 1.20 46.80 4.35
239 240 3.878103 CGAGCTAGTCAACTAGAGGCTTA 59.122 47.826 19.03 0.00 46.80 3.09
240 241 4.260866 CGAGCTAGTCAACTAGAGGCTTAC 60.261 50.000 19.03 1.96 46.80 2.34
241 242 4.862371 AGCTAGTCAACTAGAGGCTTACT 58.138 43.478 19.03 3.99 46.80 2.24
242 243 6.003859 AGCTAGTCAACTAGAGGCTTACTA 57.996 41.667 19.03 0.00 46.80 1.82
243 244 6.059484 AGCTAGTCAACTAGAGGCTTACTAG 58.941 44.000 19.03 8.32 46.80 2.57
244 245 5.239963 GCTAGTCAACTAGAGGCTTACTAGG 59.760 48.000 19.03 0.00 46.80 3.02
245 246 4.538738 AGTCAACTAGAGGCTTACTAGGG 58.461 47.826 13.13 6.54 40.86 3.53
246 247 4.230041 AGTCAACTAGAGGCTTACTAGGGA 59.770 45.833 13.13 8.30 40.86 4.20
247 248 4.338964 GTCAACTAGAGGCTTACTAGGGAC 59.661 50.000 13.13 14.30 40.86 4.46
248 249 4.017775 TCAACTAGAGGCTTACTAGGGACA 60.018 45.833 13.13 0.00 40.86 4.02
249 250 4.817874 ACTAGAGGCTTACTAGGGACAT 57.182 45.455 13.13 0.00 40.86 3.06
250 251 4.475345 ACTAGAGGCTTACTAGGGACATG 58.525 47.826 13.13 0.00 40.86 3.21
251 252 3.689872 AGAGGCTTACTAGGGACATGA 57.310 47.619 0.00 0.00 0.00 3.07
252 253 4.206244 AGAGGCTTACTAGGGACATGAT 57.794 45.455 0.00 0.00 0.00 2.45
253 254 3.900601 AGAGGCTTACTAGGGACATGATG 59.099 47.826 0.00 0.00 0.00 3.07
254 255 3.643792 GAGGCTTACTAGGGACATGATGT 59.356 47.826 0.00 0.00 0.00 3.06
255 256 4.040755 AGGCTTACTAGGGACATGATGTT 58.959 43.478 0.00 0.00 0.00 2.71
256 257 4.130118 GGCTTACTAGGGACATGATGTTG 58.870 47.826 0.00 0.00 0.00 3.33
257 258 4.384208 GGCTTACTAGGGACATGATGTTGT 60.384 45.833 0.00 0.00 0.00 3.32
258 259 4.811557 GCTTACTAGGGACATGATGTTGTC 59.188 45.833 0.00 0.00 44.27 3.18
259 260 5.395768 GCTTACTAGGGACATGATGTTGTCT 60.396 44.000 0.00 0.81 44.39 3.41
260 261 6.183360 GCTTACTAGGGACATGATGTTGTCTA 60.183 42.308 0.00 1.95 44.39 2.59
261 262 7.472100 GCTTACTAGGGACATGATGTTGTCTAT 60.472 40.741 0.00 0.00 44.39 1.98
262 263 6.166984 ACTAGGGACATGATGTTGTCTATG 57.833 41.667 0.00 0.00 44.39 2.23
263 264 5.663106 ACTAGGGACATGATGTTGTCTATGT 59.337 40.000 0.00 0.00 44.39 2.29
264 265 6.839134 ACTAGGGACATGATGTTGTCTATGTA 59.161 38.462 0.00 0.00 44.39 2.29
265 266 5.918608 AGGGACATGATGTTGTCTATGTAC 58.081 41.667 0.00 0.00 44.39 2.90
266 267 5.057149 GGGACATGATGTTGTCTATGTACC 58.943 45.833 0.00 0.00 44.39 3.34
267 268 5.057149 GGACATGATGTTGTCTATGTACCC 58.943 45.833 0.00 0.00 44.39 3.69
268 269 5.396324 GGACATGATGTTGTCTATGTACCCA 60.396 44.000 0.00 0.00 44.39 4.51
269 270 5.428253 ACATGATGTTGTCTATGTACCCAC 58.572 41.667 0.00 0.00 31.35 4.61
270 271 5.045942 ACATGATGTTGTCTATGTACCCACA 60.046 40.000 0.00 0.00 39.52 4.17
271 272 4.827692 TGATGTTGTCTATGTACCCACAC 58.172 43.478 0.00 0.00 37.54 3.82
272 273 4.284746 TGATGTTGTCTATGTACCCACACA 59.715 41.667 0.00 0.00 37.54 3.72
273 274 4.901197 TGTTGTCTATGTACCCACACAT 57.099 40.909 0.00 0.00 41.88 3.21
274 275 4.574892 TGTTGTCTATGTACCCACACATG 58.425 43.478 0.00 0.00 39.46 3.21
275 276 4.041075 TGTTGTCTATGTACCCACACATGT 59.959 41.667 0.00 0.00 39.46 3.21
276 277 5.246429 TGTTGTCTATGTACCCACACATGTA 59.754 40.000 0.00 0.00 39.46 2.29
277 278 6.070481 TGTTGTCTATGTACCCACACATGTAT 60.070 38.462 0.00 0.00 39.46 2.29
278 279 6.156748 TGTCTATGTACCCACACATGTATC 57.843 41.667 0.00 0.00 39.46 2.24
279 280 5.897250 TGTCTATGTACCCACACATGTATCT 59.103 40.000 0.00 0.00 39.46 1.98
280 281 6.183360 TGTCTATGTACCCACACATGTATCTG 60.183 42.308 0.00 0.00 39.46 2.90
281 282 6.040504 GTCTATGTACCCACACATGTATCTGA 59.959 42.308 0.00 0.00 39.46 3.27
282 283 4.736126 TGTACCCACACATGTATCTGAG 57.264 45.455 0.00 0.00 0.00 3.35
283 284 4.093743 TGTACCCACACATGTATCTGAGT 58.906 43.478 0.00 0.00 0.00 3.41
284 285 4.530553 TGTACCCACACATGTATCTGAGTT 59.469 41.667 0.00 0.00 0.00 3.01
285 286 4.640771 ACCCACACATGTATCTGAGTTT 57.359 40.909 0.00 0.00 0.00 2.66
286 287 4.579869 ACCCACACATGTATCTGAGTTTC 58.420 43.478 0.00 0.00 0.00 2.78
287 288 3.941483 CCCACACATGTATCTGAGTTTCC 59.059 47.826 0.00 0.00 0.00 3.13
288 289 4.323792 CCCACACATGTATCTGAGTTTCCT 60.324 45.833 0.00 0.00 0.00 3.36
289 290 5.104941 CCCACACATGTATCTGAGTTTCCTA 60.105 44.000 0.00 0.00 0.00 2.94
290 291 6.408548 CCCACACATGTATCTGAGTTTCCTAT 60.409 42.308 0.00 0.00 0.00 2.57
291 292 6.703607 CCACACATGTATCTGAGTTTCCTATC 59.296 42.308 0.00 0.00 0.00 2.08
292 293 7.267857 CACACATGTATCTGAGTTTCCTATCA 58.732 38.462 0.00 0.00 0.00 2.15
293 294 7.765819 CACACATGTATCTGAGTTTCCTATCAA 59.234 37.037 0.00 0.00 0.00 2.57
294 295 8.489489 ACACATGTATCTGAGTTTCCTATCAAT 58.511 33.333 0.00 0.00 0.00 2.57
295 296 9.987272 CACATGTATCTGAGTTTCCTATCAATA 57.013 33.333 0.00 0.00 0.00 1.90
296 297 9.988815 ACATGTATCTGAGTTTCCTATCAATAC 57.011 33.333 0.00 0.00 0.00 1.89
297 298 9.987272 CATGTATCTGAGTTTCCTATCAATACA 57.013 33.333 0.00 0.00 35.88 2.29
376 377 8.614469 AACTGATTTATTATTGCCTCTAGAGC 57.386 34.615 14.73 10.34 0.00 4.09
377 378 7.739825 ACTGATTTATTATTGCCTCTAGAGCA 58.260 34.615 14.73 12.79 38.81 4.26
378 379 8.381636 ACTGATTTATTATTGCCTCTAGAGCAT 58.618 33.333 14.73 8.17 40.59 3.79
379 380 9.881649 CTGATTTATTATTGCCTCTAGAGCATA 57.118 33.333 14.73 7.24 40.59 3.14
384 385 9.672673 TTATTATTGCCTCTAGAGCATATTTCC 57.327 33.333 14.73 0.00 40.59 3.13
385 386 5.573380 ATTGCCTCTAGAGCATATTTCCA 57.427 39.130 14.73 0.46 40.59 3.53
386 387 5.372343 TTGCCTCTAGAGCATATTTCCAA 57.628 39.130 14.73 4.29 40.59 3.53
387 388 4.708177 TGCCTCTAGAGCATATTTCCAAC 58.292 43.478 14.73 0.00 34.69 3.77
443 450 4.382470 CCAGTCGAAGAAGTTCAGGATCAT 60.382 45.833 5.50 0.00 39.69 2.45
448 455 5.105351 TCGAAGAAGTTCAGGATCATAGCAA 60.105 40.000 5.50 0.00 32.36 3.91
449 456 5.757320 CGAAGAAGTTCAGGATCATAGCAAT 59.243 40.000 5.50 0.00 32.36 3.56
450 457 6.292757 CGAAGAAGTTCAGGATCATAGCAATG 60.293 42.308 5.50 0.00 32.36 2.82
453 460 2.555757 GTTCAGGATCATAGCAATGCCC 59.444 50.000 0.00 0.00 32.76 5.36
454 461 1.162698 CAGGATCATAGCAATGCCCG 58.837 55.000 0.00 0.00 33.43 6.13
463 470 2.929903 GCAATGCCCGAAGCCACAA 61.930 57.895 0.00 0.00 42.71 3.33
468 475 3.283684 CCCGAAGCCACAAACGCA 61.284 61.111 0.00 0.00 0.00 5.24
485 492 1.202177 CGCACATCAACCAATAGGCAC 60.202 52.381 0.00 0.00 39.06 5.01
495 502 1.383248 AATAGGCACCCGAGCTCCT 60.383 57.895 8.47 0.81 34.17 3.69
498 505 4.154347 GGCACCCGAGCTCCTCAG 62.154 72.222 8.47 0.00 34.17 3.35
620 629 1.004745 CACCCTAAGCCCTGACAACAT 59.995 52.381 0.00 0.00 0.00 2.71
763 774 1.613836 AACCCTACTCGAACGTGTCT 58.386 50.000 5.26 0.00 0.00 3.41
769 780 3.546670 CCTACTCGAACGTGTCTATTTGC 59.453 47.826 5.26 0.00 0.00 3.68
775 787 4.081761 CGAACGTGTCTATTTGCATTCAC 58.918 43.478 0.00 0.00 0.00 3.18
833 858 6.996879 ACTACTCCCTGTTTTTAAGGAAGAAC 59.003 38.462 0.00 0.00 36.91 3.01
842 872 9.678941 CTGTTTTTAAGGAAGAACAACTAATCC 57.321 33.333 0.00 0.00 32.25 3.01
852 882 5.983540 AGAACAACTAATCCTGATGAGGTC 58.016 41.667 0.00 0.00 40.76 3.85
900 933 3.261981 AGGTACCATTTCGCTTTCGAT 57.738 42.857 15.94 0.00 45.04 3.59
995 1136 7.434492 CCAACGTTCACAGTATATATTCTCCT 58.566 38.462 0.00 0.00 0.00 3.69
1022 1163 2.031012 TGGAAGTGTCAGCCTGCG 59.969 61.111 0.00 0.00 0.00 5.18
1092 1246 2.569404 AGTCAGTCTGTTTCCATCTCCC 59.431 50.000 0.00 0.00 0.00 4.30
1188 1345 2.436824 GCCAAGGAGGAGTTCGGC 60.437 66.667 0.00 0.00 41.22 5.54
1476 1636 1.204941 CCGTTCCTGGACGAGATCTTT 59.795 52.381 16.62 0.00 45.47 2.52
1505 1668 1.539869 AGGAGGCCAAGCTGGAGAA 60.540 57.895 5.01 0.00 40.96 2.87
1811 1974 2.573869 GTACGAGGAGCTGCTGCA 59.426 61.111 23.21 0.88 42.74 4.41
2067 2236 3.665675 GACGCGGCTGGATGAGGTT 62.666 63.158 12.47 0.00 0.00 3.50
2118 2287 1.227674 GGCTCCATGATCGGGACAC 60.228 63.158 0.00 0.00 0.00 3.67
2119 2288 1.592669 GCTCCATGATCGGGACACG 60.593 63.158 0.00 0.00 46.11 4.49
2120 2289 1.816537 CTCCATGATCGGGACACGT 59.183 57.895 0.00 0.00 44.69 4.49
2121 2290 0.249073 CTCCATGATCGGGACACGTC 60.249 60.000 0.00 0.00 44.69 4.34
2122 2291 1.588932 CCATGATCGGGACACGTCG 60.589 63.158 0.00 0.00 44.69 5.12
2123 2292 2.104331 ATGATCGGGACACGTCGC 59.896 61.111 0.00 4.26 44.69 5.19
2137 2306 4.281947 TCGCGTGCGTGTGGGTAA 62.282 61.111 14.47 0.00 40.74 2.85
2138 2307 3.339464 CGCGTGCGTGTGGGTAAA 61.339 61.111 6.00 0.00 34.35 2.01
2139 2308 2.673114 CGCGTGCGTGTGGGTAAAT 61.673 57.895 6.00 0.00 34.35 1.40
2140 2309 1.577421 GCGTGCGTGTGGGTAAATT 59.423 52.632 0.00 0.00 0.00 1.82
2141 2310 0.797542 GCGTGCGTGTGGGTAAATTA 59.202 50.000 0.00 0.00 0.00 1.40
2142 2311 1.197264 GCGTGCGTGTGGGTAAATTAA 59.803 47.619 0.00 0.00 0.00 1.40
2143 2312 2.726681 GCGTGCGTGTGGGTAAATTAAG 60.727 50.000 0.00 0.00 0.00 1.85
2144 2313 2.726681 CGTGCGTGTGGGTAAATTAAGC 60.727 50.000 0.00 0.00 0.00 3.09
2145 2314 1.465387 TGCGTGTGGGTAAATTAAGCG 59.535 47.619 0.00 0.00 0.00 4.68
2146 2315 1.733360 GCGTGTGGGTAAATTAAGCGA 59.267 47.619 0.00 0.00 0.00 4.93
2147 2316 2.222953 GCGTGTGGGTAAATTAAGCGAG 60.223 50.000 0.00 0.00 0.00 5.03
2148 2317 2.350498 CGTGTGGGTAAATTAAGCGAGG 59.650 50.000 0.00 0.00 0.00 4.63
2149 2318 2.096980 GTGTGGGTAAATTAAGCGAGGC 59.903 50.000 0.00 0.00 0.00 4.70
2150 2319 2.290387 TGTGGGTAAATTAAGCGAGGCA 60.290 45.455 0.00 0.00 0.00 4.75
2154 2323 3.630312 GGGTAAATTAAGCGAGGCAATCA 59.370 43.478 0.00 0.00 0.00 2.57
2194 2363 0.679002 CTGTATGCTTGGCTGCTGGT 60.679 55.000 0.00 0.00 0.00 4.00
2195 2364 0.617935 TGTATGCTTGGCTGCTGGTA 59.382 50.000 0.00 0.00 0.00 3.25
2197 2366 0.107214 TATGCTTGGCTGCTGGTACC 60.107 55.000 4.43 4.43 0.00 3.34
2198 2367 1.856539 ATGCTTGGCTGCTGGTACCT 61.857 55.000 14.36 0.00 0.00 3.08
2201 2370 0.674895 CTTGGCTGCTGGTACCTGTC 60.675 60.000 18.89 12.10 0.00 3.51
2202 2371 2.125512 GGCTGCTGGTACCTGTCG 60.126 66.667 18.89 11.61 0.00 4.35
2203 2372 2.646175 GGCTGCTGGTACCTGTCGA 61.646 63.158 18.89 4.33 0.00 4.20
2204 2373 1.517832 GCTGCTGGTACCTGTCGAT 59.482 57.895 18.89 0.00 0.00 3.59
2207 2376 2.418197 GCTGCTGGTACCTGTCGATTTA 60.418 50.000 18.89 0.00 0.00 1.40
2209 2378 4.250464 CTGCTGGTACCTGTCGATTTAAA 58.750 43.478 18.89 0.00 0.00 1.52
2211 2380 5.250200 TGCTGGTACCTGTCGATTTAAAAT 58.750 37.500 18.89 0.00 0.00 1.82
2240 2411 0.753867 TGTTCTCGGCACAACCACTA 59.246 50.000 0.00 0.00 39.03 2.74
2242 2413 0.034337 TTCTCGGCACAACCACTACC 59.966 55.000 0.00 0.00 39.03 3.18
2248 2419 2.614481 CGGCACAACCACTACCTACATT 60.614 50.000 0.00 0.00 39.03 2.71
2251 2422 4.574828 GGCACAACCACTACCTACATTATG 59.425 45.833 0.00 0.00 38.86 1.90
2253 2424 5.741011 CACAACCACTACCTACATTATGGT 58.259 41.667 0.00 0.00 42.22 3.55
2295 2467 7.492020 TGATTATCTATTGCAACATTTTGGCAC 59.508 33.333 0.00 0.00 32.81 5.01
2296 2468 4.597404 TCTATTGCAACATTTTGGCACA 57.403 36.364 0.00 0.00 32.81 4.57
2304 2486 5.100943 GCAACATTTTGGCACATTTGTTTT 58.899 33.333 0.00 0.00 39.30 2.43
2335 2517 4.151258 ACTTGTCAGCATCAAACGATTG 57.849 40.909 0.00 0.00 37.92 2.67
2349 2531 4.097071 AACGATTGTTGGTGCACAAGCA 62.097 45.455 20.43 13.66 42.12 3.91
2368 2550 2.477754 GCACCACGGTTTAGTTCAGTAC 59.522 50.000 0.00 0.00 0.00 2.73
2369 2551 3.801293 GCACCACGGTTTAGTTCAGTACT 60.801 47.826 0.00 0.00 41.04 2.73
2370 2552 3.739300 CACCACGGTTTAGTTCAGTACTG 59.261 47.826 17.17 17.17 37.73 2.74
2371 2553 2.735134 CCACGGTTTAGTTCAGTACTGC 59.265 50.000 18.45 5.18 37.73 4.40
2372 2554 3.386486 CACGGTTTAGTTCAGTACTGCA 58.614 45.455 18.45 4.20 37.73 4.41
2373 2555 3.428870 CACGGTTTAGTTCAGTACTGCAG 59.571 47.826 18.45 13.48 37.73 4.41
2374 2556 3.069158 ACGGTTTAGTTCAGTACTGCAGT 59.931 43.478 25.12 25.12 37.73 4.40
2375 2557 4.279169 ACGGTTTAGTTCAGTACTGCAGTA 59.721 41.667 22.67 22.67 37.73 2.74
2376 2558 4.857588 CGGTTTAGTTCAGTACTGCAGTAG 59.142 45.833 26.70 16.00 37.73 2.57
2377 2559 4.626172 GGTTTAGTTCAGTACTGCAGTAGC 59.374 45.833 26.70 19.69 37.73 3.58
2378 2560 2.638556 AGTTCAGTACTGCAGTAGCG 57.361 50.000 26.70 19.44 46.23 4.26
2634 2834 4.254709 TGCGCTGCAACCTGGTCT 62.255 61.111 9.73 0.00 34.76 3.85
2838 3051 1.154263 GACGGTCTCAACGAGGTCG 60.154 63.158 0.00 0.00 46.33 4.79
2962 3178 4.863548 TCCTTTCAGCATTGAAGATCCAT 58.136 39.130 0.00 0.00 43.76 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 0.031721 GCAACTCCCGGATACCGTAG 59.968 60.000 0.73 8.43 46.80 3.51
14 15 0.683828 TGCAACTCCCGGATACCGTA 60.684 55.000 0.73 0.00 46.80 4.02
15 16 1.985662 TGCAACTCCCGGATACCGT 60.986 57.895 0.73 0.00 46.80 4.83
16 17 2.233605 TGTGCAACTCCCGGATACCG 62.234 60.000 0.73 3.03 42.30 4.02
17 18 0.035820 TTGTGCAACTCCCGGATACC 60.036 55.000 0.73 0.00 38.04 2.73
18 19 1.940613 GATTGTGCAACTCCCGGATAC 59.059 52.381 0.73 0.00 38.04 2.24
19 20 1.837439 AGATTGTGCAACTCCCGGATA 59.163 47.619 0.73 0.00 38.04 2.59
20 21 0.620556 AGATTGTGCAACTCCCGGAT 59.379 50.000 0.73 0.00 38.04 4.18
21 22 1.271856 TAGATTGTGCAACTCCCGGA 58.728 50.000 0.73 0.00 38.04 5.14
22 23 2.107950 TTAGATTGTGCAACTCCCGG 57.892 50.000 0.00 0.00 38.04 5.73
23 24 2.355756 CCATTAGATTGTGCAACTCCCG 59.644 50.000 0.00 0.00 38.04 5.14
24 25 3.356290 ACCATTAGATTGTGCAACTCCC 58.644 45.455 0.00 0.00 38.04 4.30
25 26 4.265073 AGACCATTAGATTGTGCAACTCC 58.735 43.478 0.00 0.00 38.04 3.85
26 27 6.037610 CCTTAGACCATTAGATTGTGCAACTC 59.962 42.308 0.00 0.00 38.04 3.01
27 28 5.882557 CCTTAGACCATTAGATTGTGCAACT 59.117 40.000 0.00 0.00 38.04 3.16
28 29 5.880332 TCCTTAGACCATTAGATTGTGCAAC 59.120 40.000 0.00 0.00 37.35 4.17
29 30 6.061022 TCCTTAGACCATTAGATTGTGCAA 57.939 37.500 0.00 0.00 0.00 4.08
30 31 5.692115 TCCTTAGACCATTAGATTGTGCA 57.308 39.130 0.00 0.00 0.00 4.57
31 32 7.283127 TCATTTCCTTAGACCATTAGATTGTGC 59.717 37.037 0.00 0.00 0.00 4.57
32 33 8.737168 TCATTTCCTTAGACCATTAGATTGTG 57.263 34.615 0.00 0.00 0.00 3.33
39 40 9.832445 GTCAAGTATCATTTCCTTAGACCATTA 57.168 33.333 0.00 0.00 0.00 1.90
40 41 8.328758 TGTCAAGTATCATTTCCTTAGACCATT 58.671 33.333 0.00 0.00 0.00 3.16
41 42 7.861629 TGTCAAGTATCATTTCCTTAGACCAT 58.138 34.615 0.00 0.00 0.00 3.55
42 43 7.252612 TGTCAAGTATCATTTCCTTAGACCA 57.747 36.000 0.00 0.00 0.00 4.02
43 44 8.738645 AATGTCAAGTATCATTTCCTTAGACC 57.261 34.615 0.00 0.00 31.35 3.85
50 51 9.508567 GCTTTTCTAATGTCAAGTATCATTTCC 57.491 33.333 0.00 0.00 36.06 3.13
56 57 9.709600 GCTAAAGCTTTTCTAATGTCAAGTATC 57.290 33.333 18.47 0.00 38.21 2.24
57 58 9.231297 TGCTAAAGCTTTTCTAATGTCAAGTAT 57.769 29.630 18.47 0.00 42.66 2.12
58 59 8.615878 TGCTAAAGCTTTTCTAATGTCAAGTA 57.384 30.769 18.47 0.96 42.66 2.24
59 60 7.510549 TGCTAAAGCTTTTCTAATGTCAAGT 57.489 32.000 18.47 0.00 42.66 3.16
60 61 9.495754 GTATGCTAAAGCTTTTCTAATGTCAAG 57.504 33.333 18.47 5.49 42.66 3.02
61 62 8.175069 CGTATGCTAAAGCTTTTCTAATGTCAA 58.825 33.333 18.47 0.00 42.66 3.18
62 63 7.547722 TCGTATGCTAAAGCTTTTCTAATGTCA 59.452 33.333 18.47 4.72 42.66 3.58
63 64 7.906160 TCGTATGCTAAAGCTTTTCTAATGTC 58.094 34.615 18.47 1.59 42.66 3.06
64 65 7.843490 TCGTATGCTAAAGCTTTTCTAATGT 57.157 32.000 18.47 0.66 42.66 2.71
65 66 8.391106 AGTTCGTATGCTAAAGCTTTTCTAATG 58.609 33.333 18.47 5.69 42.66 1.90
66 67 8.494016 AGTTCGTATGCTAAAGCTTTTCTAAT 57.506 30.769 18.47 8.96 42.66 1.73
67 68 7.900782 AGTTCGTATGCTAAAGCTTTTCTAA 57.099 32.000 18.47 0.00 42.66 2.10
68 69 8.030692 TGTAGTTCGTATGCTAAAGCTTTTCTA 58.969 33.333 18.47 4.25 42.66 2.10
69 70 6.872020 TGTAGTTCGTATGCTAAAGCTTTTCT 59.128 34.615 18.47 2.60 42.66 2.52
70 71 6.954297 GTGTAGTTCGTATGCTAAAGCTTTTC 59.046 38.462 18.47 10.34 42.66 2.29
71 72 6.400727 CGTGTAGTTCGTATGCTAAAGCTTTT 60.401 38.462 18.47 1.19 42.66 2.27
72 73 5.061808 CGTGTAGTTCGTATGCTAAAGCTTT 59.938 40.000 17.30 17.30 42.66 3.51
73 74 4.561606 CGTGTAGTTCGTATGCTAAAGCTT 59.438 41.667 3.26 0.00 42.66 3.74
74 75 4.103357 CGTGTAGTTCGTATGCTAAAGCT 58.897 43.478 3.26 0.00 42.66 3.74
75 76 4.100529 TCGTGTAGTTCGTATGCTAAAGC 58.899 43.478 0.00 0.00 42.50 3.51
76 77 6.200100 AGATCGTGTAGTTCGTATGCTAAAG 58.800 40.000 0.00 0.00 0.00 1.85
77 78 6.127810 AGATCGTGTAGTTCGTATGCTAAA 57.872 37.500 0.00 0.00 0.00 1.85
78 79 5.746307 AGATCGTGTAGTTCGTATGCTAA 57.254 39.130 0.00 0.00 0.00 3.09
79 80 5.746307 AAGATCGTGTAGTTCGTATGCTA 57.254 39.130 0.00 0.00 0.00 3.49
80 81 4.634184 AAGATCGTGTAGTTCGTATGCT 57.366 40.909 0.00 0.00 0.00 3.79
81 82 4.561606 ACAAAGATCGTGTAGTTCGTATGC 59.438 41.667 3.52 0.00 0.00 3.14
82 83 5.498700 GCACAAAGATCGTGTAGTTCGTATG 60.499 44.000 4.96 0.00 36.71 2.39
83 84 4.561606 GCACAAAGATCGTGTAGTTCGTAT 59.438 41.667 4.96 0.00 36.71 3.06
84 85 3.916172 GCACAAAGATCGTGTAGTTCGTA 59.084 43.478 4.96 0.00 36.71 3.43
85 86 2.729882 GCACAAAGATCGTGTAGTTCGT 59.270 45.455 4.96 0.00 36.71 3.85
86 87 2.987149 AGCACAAAGATCGTGTAGTTCG 59.013 45.455 4.96 0.00 36.71 3.95
87 88 4.563184 CCTAGCACAAAGATCGTGTAGTTC 59.437 45.833 4.96 0.00 36.71 3.01
88 89 4.495422 CCTAGCACAAAGATCGTGTAGTT 58.505 43.478 4.96 2.32 36.71 2.24
89 90 3.676324 GCCTAGCACAAAGATCGTGTAGT 60.676 47.826 4.96 0.00 36.71 2.73
90 91 2.860735 GCCTAGCACAAAGATCGTGTAG 59.139 50.000 4.96 0.78 36.71 2.74
91 92 2.496070 AGCCTAGCACAAAGATCGTGTA 59.504 45.455 4.96 0.00 36.71 2.90
92 93 1.276421 AGCCTAGCACAAAGATCGTGT 59.724 47.619 0.00 0.00 36.71 4.49
93 94 2.015736 AGCCTAGCACAAAGATCGTG 57.984 50.000 0.00 0.00 37.43 4.35
94 95 2.770164 AAGCCTAGCACAAAGATCGT 57.230 45.000 0.00 0.00 0.00 3.73
95 96 3.126831 CCTAAGCCTAGCACAAAGATCG 58.873 50.000 0.00 0.00 0.00 3.69
96 97 4.408182 TCCTAAGCCTAGCACAAAGATC 57.592 45.455 0.00 0.00 0.00 2.75
97 98 5.128919 CAATCCTAAGCCTAGCACAAAGAT 58.871 41.667 0.00 0.00 0.00 2.40
98 99 4.517285 CAATCCTAAGCCTAGCACAAAGA 58.483 43.478 0.00 0.00 0.00 2.52
99 100 3.629398 CCAATCCTAAGCCTAGCACAAAG 59.371 47.826 0.00 0.00 0.00 2.77
100 101 3.620488 CCAATCCTAAGCCTAGCACAAA 58.380 45.455 0.00 0.00 0.00 2.83
101 102 2.092429 CCCAATCCTAAGCCTAGCACAA 60.092 50.000 0.00 0.00 0.00 3.33
102 103 1.490490 CCCAATCCTAAGCCTAGCACA 59.510 52.381 0.00 0.00 0.00 4.57
103 104 1.490910 ACCCAATCCTAAGCCTAGCAC 59.509 52.381 0.00 0.00 0.00 4.40
104 105 1.768870 GACCCAATCCTAAGCCTAGCA 59.231 52.381 0.00 0.00 0.00 3.49
105 106 2.050918 AGACCCAATCCTAAGCCTAGC 58.949 52.381 0.00 0.00 0.00 3.42
106 107 3.456277 ACAAGACCCAATCCTAAGCCTAG 59.544 47.826 0.00 0.00 0.00 3.02
107 108 3.454812 GACAAGACCCAATCCTAAGCCTA 59.545 47.826 0.00 0.00 0.00 3.93
108 109 2.239907 GACAAGACCCAATCCTAAGCCT 59.760 50.000 0.00 0.00 0.00 4.58
109 110 2.644676 GACAAGACCCAATCCTAAGCC 58.355 52.381 0.00 0.00 0.00 4.35
110 111 2.026262 TGGACAAGACCCAATCCTAAGC 60.026 50.000 0.00 0.00 32.06 3.09
111 112 4.080356 TGATGGACAAGACCCAATCCTAAG 60.080 45.833 0.00 0.00 37.22 2.18
112 113 3.849574 TGATGGACAAGACCCAATCCTAA 59.150 43.478 0.00 0.00 37.22 2.69
113 114 3.199946 GTGATGGACAAGACCCAATCCTA 59.800 47.826 0.00 0.00 37.22 2.94
114 115 2.025887 GTGATGGACAAGACCCAATCCT 60.026 50.000 0.00 0.00 37.22 3.24
115 116 2.290896 TGTGATGGACAAGACCCAATCC 60.291 50.000 0.00 0.00 37.22 3.01
116 117 3.071874 TGTGATGGACAAGACCCAATC 57.928 47.619 0.00 0.00 37.22 2.67
117 118 3.010472 TGATGTGATGGACAAGACCCAAT 59.990 43.478 0.00 0.00 38.36 3.16
118 119 2.374839 TGATGTGATGGACAAGACCCAA 59.625 45.455 0.00 0.00 38.36 4.12
119 120 1.984424 TGATGTGATGGACAAGACCCA 59.016 47.619 0.00 0.00 38.36 4.51
120 121 2.787473 TGATGTGATGGACAAGACCC 57.213 50.000 0.00 0.00 38.36 4.46
121 122 4.521146 AGAATGATGTGATGGACAAGACC 58.479 43.478 0.00 0.00 38.36 3.85
122 123 4.574013 GGAGAATGATGTGATGGACAAGAC 59.426 45.833 0.00 0.00 38.36 3.01
123 124 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
124 125 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
125 126 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
126 127 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
127 128 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
128 129 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
136 137 6.575847 CGGGATCACATCATTAGGAGAATGAT 60.576 42.308 6.90 6.90 45.40 2.45
137 138 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
138 139 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
139 140 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
140 141 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
141 142 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
142 143 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
143 144 5.542251 TGATAACGGGATCACATCATTAGGA 59.458 40.000 0.00 0.00 30.75 2.94
144 145 5.793817 TGATAACGGGATCACATCATTAGG 58.206 41.667 0.00 0.00 30.75 2.69
145 146 7.121974 GTTGATAACGGGATCACATCATTAG 57.878 40.000 0.00 0.00 35.56 1.73
172 173 1.954382 CCTGAGCATGGACATTGGATG 59.046 52.381 0.00 0.00 0.00 3.51
173 174 1.848388 TCCTGAGCATGGACATTGGAT 59.152 47.619 0.00 0.00 0.00 3.41
174 175 1.288188 TCCTGAGCATGGACATTGGA 58.712 50.000 0.00 0.00 0.00 3.53
175 176 2.133281 TTCCTGAGCATGGACATTGG 57.867 50.000 0.00 0.00 32.65 3.16
176 177 2.821378 TGTTTCCTGAGCATGGACATTG 59.179 45.455 0.00 0.00 32.65 2.82
177 178 3.087031 CTGTTTCCTGAGCATGGACATT 58.913 45.455 0.00 0.00 32.65 2.71
178 179 2.040813 ACTGTTTCCTGAGCATGGACAT 59.959 45.455 0.00 0.00 32.65 3.06
179 180 1.421268 ACTGTTTCCTGAGCATGGACA 59.579 47.619 0.00 0.00 32.65 4.02
180 181 2.191128 ACTGTTTCCTGAGCATGGAC 57.809 50.000 0.00 0.00 32.65 4.02
181 182 3.559171 GGTTACTGTTTCCTGAGCATGGA 60.559 47.826 0.00 0.00 0.00 3.41
182 183 2.749621 GGTTACTGTTTCCTGAGCATGG 59.250 50.000 0.00 0.00 0.00 3.66
183 184 3.411446 TGGTTACTGTTTCCTGAGCATG 58.589 45.455 0.00 0.00 0.00 4.06
184 185 3.788227 TGGTTACTGTTTCCTGAGCAT 57.212 42.857 0.00 0.00 0.00 3.79
185 186 3.327757 AGATGGTTACTGTTTCCTGAGCA 59.672 43.478 0.00 0.00 0.00 4.26
186 187 3.944087 AGATGGTTACTGTTTCCTGAGC 58.056 45.455 0.00 0.00 0.00 4.26
187 188 7.331026 TCAATAGATGGTTACTGTTTCCTGAG 58.669 38.462 0.00 0.00 0.00 3.35
188 189 7.252612 TCAATAGATGGTTACTGTTTCCTGA 57.747 36.000 0.00 0.00 0.00 3.86
189 190 7.770433 TGATCAATAGATGGTTACTGTTTCCTG 59.230 37.037 0.00 0.00 33.72 3.86
190 191 7.861629 TGATCAATAGATGGTTACTGTTTCCT 58.138 34.615 0.00 0.00 33.72 3.36
191 192 8.398665 GTTGATCAATAGATGGTTACTGTTTCC 58.601 37.037 12.12 0.00 33.72 3.13
192 193 8.116753 CGTTGATCAATAGATGGTTACTGTTTC 58.883 37.037 12.12 0.00 33.72 2.78
193 194 7.822334 TCGTTGATCAATAGATGGTTACTGTTT 59.178 33.333 12.12 0.00 33.72 2.83
194 195 7.327975 TCGTTGATCAATAGATGGTTACTGTT 58.672 34.615 12.12 0.00 33.72 3.16
195 196 6.873997 TCGTTGATCAATAGATGGTTACTGT 58.126 36.000 12.12 0.00 33.72 3.55
196 197 6.074088 GCTCGTTGATCAATAGATGGTTACTG 60.074 42.308 19.51 7.58 33.72 2.74
197 198 5.986135 GCTCGTTGATCAATAGATGGTTACT 59.014 40.000 19.51 0.00 33.72 2.24
198 199 5.986135 AGCTCGTTGATCAATAGATGGTTAC 59.014 40.000 19.51 1.79 33.72 2.50
199 200 6.161855 AGCTCGTTGATCAATAGATGGTTA 57.838 37.500 19.51 0.00 33.72 2.85
200 201 5.028549 AGCTCGTTGATCAATAGATGGTT 57.971 39.130 19.51 6.05 33.72 3.67
201 202 4.679373 AGCTCGTTGATCAATAGATGGT 57.321 40.909 19.51 14.02 33.72 3.55
202 203 5.777802 ACTAGCTCGTTGATCAATAGATGG 58.222 41.667 19.51 17.62 33.72 3.51
203 204 6.442112 TGACTAGCTCGTTGATCAATAGATG 58.558 40.000 19.51 12.48 33.72 2.90
204 205 6.641169 TGACTAGCTCGTTGATCAATAGAT 57.359 37.500 19.51 16.66 37.13 1.98
205 206 6.095580 AGTTGACTAGCTCGTTGATCAATAGA 59.904 38.462 19.51 16.55 0.00 1.98
206 207 6.269315 AGTTGACTAGCTCGTTGATCAATAG 58.731 40.000 12.12 13.07 0.00 1.73
207 208 6.208988 AGTTGACTAGCTCGTTGATCAATA 57.791 37.500 12.12 2.38 0.00 1.90
208 209 5.078411 AGTTGACTAGCTCGTTGATCAAT 57.922 39.130 12.12 0.00 0.00 2.57
209 210 4.521130 AGTTGACTAGCTCGTTGATCAA 57.479 40.909 3.38 3.38 0.00 2.57
210 211 4.941873 TCTAGTTGACTAGCTCGTTGATCA 59.058 41.667 12.30 0.00 44.24 2.92
211 212 5.487153 TCTAGTTGACTAGCTCGTTGATC 57.513 43.478 12.30 0.00 44.24 2.92
212 213 4.336993 CCTCTAGTTGACTAGCTCGTTGAT 59.663 45.833 12.30 0.00 44.24 2.57
213 214 3.690139 CCTCTAGTTGACTAGCTCGTTGA 59.310 47.826 12.30 0.00 44.24 3.18
214 215 3.732471 GCCTCTAGTTGACTAGCTCGTTG 60.732 52.174 12.30 0.75 44.24 4.10
215 216 2.424246 GCCTCTAGTTGACTAGCTCGTT 59.576 50.000 12.30 0.00 44.24 3.85
216 217 2.018515 GCCTCTAGTTGACTAGCTCGT 58.981 52.381 12.30 0.00 44.24 4.18
217 218 2.294074 AGCCTCTAGTTGACTAGCTCG 58.706 52.381 12.30 0.00 44.24 5.03
218 219 4.885325 AGTAAGCCTCTAGTTGACTAGCTC 59.115 45.833 12.30 5.16 44.24 4.09
219 220 4.862371 AGTAAGCCTCTAGTTGACTAGCT 58.138 43.478 12.30 5.64 44.24 3.32
220 221 5.239963 CCTAGTAAGCCTCTAGTTGACTAGC 59.760 48.000 12.30 3.61 44.24 3.42
221 222 5.766174 CCCTAGTAAGCCTCTAGTTGACTAG 59.234 48.000 11.14 11.14 45.57 2.57
222 223 5.431073 TCCCTAGTAAGCCTCTAGTTGACTA 59.569 44.000 0.00 0.00 34.72 2.59
223 224 4.230041 TCCCTAGTAAGCCTCTAGTTGACT 59.770 45.833 0.00 0.00 34.72 3.41
224 225 4.338964 GTCCCTAGTAAGCCTCTAGTTGAC 59.661 50.000 0.00 8.18 34.72 3.18
225 226 4.017775 TGTCCCTAGTAAGCCTCTAGTTGA 60.018 45.833 0.00 1.98 34.72 3.18
226 227 4.279145 TGTCCCTAGTAAGCCTCTAGTTG 58.721 47.826 0.00 0.00 34.72 3.16
227 228 4.604784 TGTCCCTAGTAAGCCTCTAGTT 57.395 45.455 0.00 0.00 34.72 2.24
228 229 4.168283 TCATGTCCCTAGTAAGCCTCTAGT 59.832 45.833 0.00 0.00 34.72 2.57
229 230 4.730966 TCATGTCCCTAGTAAGCCTCTAG 58.269 47.826 0.00 0.00 35.86 2.43
230 231 4.808767 TCATGTCCCTAGTAAGCCTCTA 57.191 45.455 0.00 0.00 0.00 2.43
231 232 3.689872 TCATGTCCCTAGTAAGCCTCT 57.310 47.619 0.00 0.00 0.00 3.69
232 233 3.643792 ACATCATGTCCCTAGTAAGCCTC 59.356 47.826 0.00 0.00 0.00 4.70
233 234 3.658725 ACATCATGTCCCTAGTAAGCCT 58.341 45.455 0.00 0.00 0.00 4.58
234 235 4.130118 CAACATCATGTCCCTAGTAAGCC 58.870 47.826 0.00 0.00 0.00 4.35
235 236 4.770795 ACAACATCATGTCCCTAGTAAGC 58.229 43.478 0.00 0.00 0.00 3.09
245 246 8.793519 GTGTGGGTACATAGACAACATCATGTC 61.794 44.444 0.00 0.00 43.20 3.06
246 247 5.045942 TGTGGGTACATAGACAACATCATGT 60.046 40.000 0.00 0.00 35.01 3.21
247 248 5.294306 GTGTGGGTACATAGACAACATCATG 59.706 44.000 0.00 0.00 39.39 3.07
248 249 5.045942 TGTGTGGGTACATAGACAACATCAT 60.046 40.000 0.00 0.00 39.39 2.45
249 250 4.284746 TGTGTGGGTACATAGACAACATCA 59.715 41.667 0.00 0.00 39.39 3.07
250 251 4.827692 TGTGTGGGTACATAGACAACATC 58.172 43.478 0.00 0.00 39.39 3.06
251 252 4.901197 TGTGTGGGTACATAGACAACAT 57.099 40.909 0.00 0.00 39.39 2.71
252 253 4.041075 ACATGTGTGGGTACATAGACAACA 59.959 41.667 0.00 0.00 39.17 3.33
253 254 4.575885 ACATGTGTGGGTACATAGACAAC 58.424 43.478 0.00 0.00 39.17 3.32
254 255 4.901197 ACATGTGTGGGTACATAGACAA 57.099 40.909 0.00 0.00 39.17 3.18
255 256 5.897250 AGATACATGTGTGGGTACATAGACA 59.103 40.000 9.11 0.00 39.17 3.41
256 257 6.040504 TCAGATACATGTGTGGGTACATAGAC 59.959 42.308 9.11 0.00 39.17 2.59
257 258 6.133356 TCAGATACATGTGTGGGTACATAGA 58.867 40.000 9.11 0.00 39.17 1.98
258 259 6.040955 ACTCAGATACATGTGTGGGTACATAG 59.959 42.308 9.11 0.00 39.17 2.23
259 260 5.897250 ACTCAGATACATGTGTGGGTACATA 59.103 40.000 9.11 0.00 39.17 2.29
260 261 4.716784 ACTCAGATACATGTGTGGGTACAT 59.283 41.667 9.11 0.00 41.77 2.29
261 262 4.093743 ACTCAGATACATGTGTGGGTACA 58.906 43.478 9.11 0.00 34.63 2.90
262 263 4.737855 ACTCAGATACATGTGTGGGTAC 57.262 45.455 9.11 0.00 0.00 3.34
263 264 5.338056 GGAAACTCAGATACATGTGTGGGTA 60.338 44.000 9.11 0.00 0.00 3.69
264 265 4.565652 GGAAACTCAGATACATGTGTGGGT 60.566 45.833 9.11 6.49 0.00 4.51
265 266 3.941483 GGAAACTCAGATACATGTGTGGG 59.059 47.826 9.11 5.82 0.00 4.61
266 267 4.836825 AGGAAACTCAGATACATGTGTGG 58.163 43.478 9.11 0.00 32.90 4.17
267 268 7.267857 TGATAGGAAACTCAGATACATGTGTG 58.732 38.462 9.11 3.44 43.67 3.82
268 269 7.423844 TGATAGGAAACTCAGATACATGTGT 57.576 36.000 9.11 0.10 43.67 3.72
269 270 8.899427 ATTGATAGGAAACTCAGATACATGTG 57.101 34.615 9.11 0.00 43.67 3.21
270 271 9.988815 GTATTGATAGGAAACTCAGATACATGT 57.011 33.333 2.69 2.69 43.67 3.21
271 272 9.987272 TGTATTGATAGGAAACTCAGATACATG 57.013 33.333 0.00 0.00 43.67 3.21
350 351 9.712305 GCTCTAGAGGCAATAATAAATCAGTTA 57.288 33.333 21.23 0.00 0.00 2.24
351 352 8.213679 TGCTCTAGAGGCAATAATAAATCAGTT 58.786 33.333 21.23 0.00 36.71 3.16
352 353 7.739825 TGCTCTAGAGGCAATAATAAATCAGT 58.260 34.615 21.23 0.00 36.71 3.41
353 354 8.789825 ATGCTCTAGAGGCAATAATAAATCAG 57.210 34.615 21.23 0.00 43.14 2.90
358 359 9.672673 GGAAATATGCTCTAGAGGCAATAATAA 57.327 33.333 21.23 4.32 43.14 1.40
359 360 8.825774 TGGAAATATGCTCTAGAGGCAATAATA 58.174 33.333 21.23 9.09 43.14 0.98
360 361 7.693132 TGGAAATATGCTCTAGAGGCAATAAT 58.307 34.615 21.23 11.28 43.14 1.28
361 362 7.078249 TGGAAATATGCTCTAGAGGCAATAA 57.922 36.000 21.23 9.78 43.14 1.40
362 363 6.686484 TGGAAATATGCTCTAGAGGCAATA 57.314 37.500 21.23 12.68 43.14 1.90
363 364 5.573380 TGGAAATATGCTCTAGAGGCAAT 57.427 39.130 21.23 11.82 43.14 3.56
364 365 5.126067 GTTGGAAATATGCTCTAGAGGCAA 58.874 41.667 21.23 10.37 43.14 4.52
365 366 4.164030 TGTTGGAAATATGCTCTAGAGGCA 59.836 41.667 21.23 18.27 44.05 4.75
366 367 4.708177 TGTTGGAAATATGCTCTAGAGGC 58.292 43.478 21.23 13.48 0.00 4.70
367 368 7.201767 CCTTTTGTTGGAAATATGCTCTAGAGG 60.202 40.741 21.23 3.52 0.00 3.69
368 369 7.337942 ACCTTTTGTTGGAAATATGCTCTAGAG 59.662 37.037 15.85 15.85 0.00 2.43
369 370 7.175104 ACCTTTTGTTGGAAATATGCTCTAGA 58.825 34.615 0.00 0.00 0.00 2.43
370 371 7.396540 ACCTTTTGTTGGAAATATGCTCTAG 57.603 36.000 0.00 0.00 0.00 2.43
371 372 7.556275 CCTACCTTTTGTTGGAAATATGCTCTA 59.444 37.037 0.00 0.00 41.81 2.43
372 373 6.378280 CCTACCTTTTGTTGGAAATATGCTCT 59.622 38.462 0.00 0.00 41.81 4.09
373 374 6.377146 TCCTACCTTTTGTTGGAAATATGCTC 59.623 38.462 0.00 0.00 44.42 4.26
374 375 6.252995 TCCTACCTTTTGTTGGAAATATGCT 58.747 36.000 0.00 0.00 44.42 3.79
375 376 6.377146 TCTCCTACCTTTTGTTGGAAATATGC 59.623 38.462 0.00 0.00 46.20 3.14
376 377 7.393234 TGTCTCCTACCTTTTGTTGGAAATATG 59.607 37.037 0.00 0.00 46.20 1.78
377 378 7.466804 TGTCTCCTACCTTTTGTTGGAAATAT 58.533 34.615 0.00 0.00 46.20 1.28
378 379 6.843752 TGTCTCCTACCTTTTGTTGGAAATA 58.156 36.000 0.00 0.00 46.20 1.40
379 380 5.701224 TGTCTCCTACCTTTTGTTGGAAAT 58.299 37.500 0.00 0.00 46.20 2.17
380 381 5.118729 TGTCTCCTACCTTTTGTTGGAAA 57.881 39.130 0.00 0.00 46.20 3.13
381 382 4.781775 TGTCTCCTACCTTTTGTTGGAA 57.218 40.909 0.00 0.00 46.20 3.53
382 383 4.781775 TTGTCTCCTACCTTTTGTTGGA 57.218 40.909 0.00 0.00 45.05 3.53
383 384 5.592688 TCTTTTGTCTCCTACCTTTTGTTGG 59.407 40.000 0.00 0.00 40.76 3.77
384 385 6.542370 TCTCTTTTGTCTCCTACCTTTTGTTG 59.458 38.462 0.00 0.00 0.00 3.33
385 386 6.542735 GTCTCTTTTGTCTCCTACCTTTTGTT 59.457 38.462 0.00 0.00 0.00 2.83
386 387 6.056236 GTCTCTTTTGTCTCCTACCTTTTGT 58.944 40.000 0.00 0.00 0.00 2.83
387 388 6.055588 TGTCTCTTTTGTCTCCTACCTTTTG 58.944 40.000 0.00 0.00 0.00 2.44
443 450 2.674138 TGGCTTCGGGCATTGCTA 59.326 55.556 8.82 0.00 45.74 3.49
450 457 4.700365 GCGTTTGTGGCTTCGGGC 62.700 66.667 0.00 0.00 41.26 6.13
453 460 0.725784 GATGTGCGTTTGTGGCTTCG 60.726 55.000 0.00 0.00 0.00 3.79
454 461 0.310543 TGATGTGCGTTTGTGGCTTC 59.689 50.000 0.00 0.00 0.00 3.86
463 470 1.472480 GCCTATTGGTTGATGTGCGTT 59.528 47.619 0.00 0.00 35.27 4.84
468 475 1.681780 CGGGTGCCTATTGGTTGATGT 60.682 52.381 0.00 0.00 35.27 3.06
485 492 2.125350 GTTGCTGAGGAGCTCGGG 60.125 66.667 7.83 0.00 46.39 5.14
495 502 0.482446 ATTCTTGGGGGTGTTGCTGA 59.518 50.000 0.00 0.00 0.00 4.26
498 505 0.318120 CACATTCTTGGGGGTGTTGC 59.682 55.000 0.00 0.00 0.00 4.17
503 510 1.710244 TGTCATCACATTCTTGGGGGT 59.290 47.619 0.00 0.00 0.00 4.95
535 542 3.524648 TTCTTTCGGGCTCGCCGTT 62.525 57.895 0.00 0.00 36.85 4.44
605 613 3.178046 TCCTACATGTTGTCAGGGCTTA 58.822 45.455 2.30 0.00 0.00 3.09
606 614 1.985159 TCCTACATGTTGTCAGGGCTT 59.015 47.619 2.30 0.00 0.00 4.35
620 629 5.030147 AGTGAATATTGTGGGTCTCCTACA 58.970 41.667 0.00 0.98 0.00 2.74
664 673 6.917533 AGGTGTATTTCAAAATTCAGCTGAG 58.082 36.000 17.43 4.96 45.95 3.35
665 674 6.899393 AGGTGTATTTCAAAATTCAGCTGA 57.101 33.333 13.74 13.74 45.95 4.26
668 677 8.825745 TGAAAAAGGTGTATTTCAAAATTCAGC 58.174 29.630 13.22 13.22 41.26 4.26
699 710 8.726988 CGAATAAATTGGAAGTTAGGAAGTTCA 58.273 33.333 5.01 0.00 41.57 3.18
700 711 8.943002 TCGAATAAATTGGAAGTTAGGAAGTTC 58.057 33.333 0.00 0.00 39.57 3.01
702 713 7.065923 GCTCGAATAAATTGGAAGTTAGGAAGT 59.934 37.037 0.00 0.00 0.00 3.01
703 714 7.281100 AGCTCGAATAAATTGGAAGTTAGGAAG 59.719 37.037 0.00 0.00 0.00 3.46
742 753 2.746362 AGACACGTTCGAGTAGGGTTAG 59.254 50.000 0.00 0.00 0.00 2.34
763 774 6.182627 AGAGTGAGAATGGTGAATGCAAATA 58.817 36.000 0.00 0.00 0.00 1.40
769 780 7.551974 AGAATACAAGAGTGAGAATGGTGAATG 59.448 37.037 0.00 0.00 0.00 2.67
775 787 9.743057 CTTAGTAGAATACAAGAGTGAGAATGG 57.257 37.037 0.00 0.00 46.26 3.16
833 858 3.493350 CCCGACCTCATCAGGATTAGTTG 60.493 52.174 0.00 0.00 43.65 3.16
842 872 1.819229 CAGACCCCGACCTCATCAG 59.181 63.158 0.00 0.00 0.00 2.90
852 882 4.785453 GCCAAGGAGCAGACCCCG 62.785 72.222 0.00 0.00 0.00 5.73
900 933 9.571810 CGATGGATCAAATTTTGACTTTGAATA 57.428 29.630 13.80 0.00 43.61 1.75
936 970 3.181480 ACGCATGTGCCTTTTGTTTACTT 60.181 39.130 6.08 0.00 37.91 2.24
938 972 2.470999 CACGCATGTGCCTTTTGTTTAC 59.529 45.455 6.08 0.00 39.67 2.01
939 973 2.359214 TCACGCATGTGCCTTTTGTTTA 59.641 40.909 6.08 0.00 46.01 2.01
940 974 1.135915 TCACGCATGTGCCTTTTGTTT 59.864 42.857 6.08 0.00 46.01 2.83
995 1136 3.743521 CTGACACTTCCACTCATTTGGA 58.256 45.455 0.00 0.00 44.39 3.53
1001 1142 0.394192 CAGGCTGACACTTCCACTCA 59.606 55.000 9.42 0.00 0.00 3.41
1039 1184 2.126307 TCGCGAGCAGAGAAGTGC 60.126 61.111 3.71 0.00 44.35 4.40
1109 1263 3.365265 CAGGGCCGGAAGTGTTGC 61.365 66.667 5.05 0.00 0.00 4.17
1212 1369 4.496336 AGGCCGGCCTGATGCTTC 62.496 66.667 46.71 16.84 46.22 3.86
1811 1974 4.988598 CGTGCTTGCCCGTGTCCT 62.989 66.667 0.00 0.00 0.00 3.85
1896 2065 4.320456 CACAGCTCCACCACGCCT 62.320 66.667 0.00 0.00 0.00 5.52
2067 2236 1.593209 GCGGAACTTGTCACGGACA 60.593 57.895 3.02 3.02 41.09 4.02
2106 2275 2.104331 GCGACGTGTCCCGATCAT 59.896 61.111 0.00 0.00 40.70 2.45
2120 2289 3.786901 TTTACCCACACGCACGCGA 62.787 57.895 19.66 0.00 42.83 5.87
2121 2290 2.177654 AATTTACCCACACGCACGCG 62.178 55.000 10.36 10.36 46.03 6.01
2122 2291 0.797542 TAATTTACCCACACGCACGC 59.202 50.000 0.00 0.00 0.00 5.34
2123 2292 2.726681 GCTTAATTTACCCACACGCACG 60.727 50.000 0.00 0.00 0.00 5.34
2124 2293 2.726681 CGCTTAATTTACCCACACGCAC 60.727 50.000 0.00 0.00 0.00 5.34
2125 2294 1.465387 CGCTTAATTTACCCACACGCA 59.535 47.619 0.00 0.00 0.00 5.24
2126 2295 1.733360 TCGCTTAATTTACCCACACGC 59.267 47.619 0.00 0.00 0.00 5.34
2127 2296 2.350498 CCTCGCTTAATTTACCCACACG 59.650 50.000 0.00 0.00 0.00 4.49
2128 2297 2.096980 GCCTCGCTTAATTTACCCACAC 59.903 50.000 0.00 0.00 0.00 3.82
2129 2298 2.290387 TGCCTCGCTTAATTTACCCACA 60.290 45.455 0.00 0.00 0.00 4.17
2130 2299 2.361789 TGCCTCGCTTAATTTACCCAC 58.638 47.619 0.00 0.00 0.00 4.61
2131 2300 2.791347 TGCCTCGCTTAATTTACCCA 57.209 45.000 0.00 0.00 0.00 4.51
2132 2301 3.630312 TGATTGCCTCGCTTAATTTACCC 59.370 43.478 0.00 0.00 0.00 3.69
2133 2302 4.789802 GCTGATTGCCTCGCTTAATTTACC 60.790 45.833 0.00 0.00 35.15 2.85
2134 2303 4.201910 TGCTGATTGCCTCGCTTAATTTAC 60.202 41.667 0.00 0.00 42.00 2.01
2135 2304 3.944650 TGCTGATTGCCTCGCTTAATTTA 59.055 39.130 0.00 0.00 42.00 1.40
2136 2305 2.754552 TGCTGATTGCCTCGCTTAATTT 59.245 40.909 0.00 0.00 42.00 1.82
2137 2306 2.368439 TGCTGATTGCCTCGCTTAATT 58.632 42.857 0.00 0.00 42.00 1.40
2138 2307 2.042686 TGCTGATTGCCTCGCTTAAT 57.957 45.000 0.00 0.00 42.00 1.40
2139 2308 1.672363 CATGCTGATTGCCTCGCTTAA 59.328 47.619 0.00 0.00 42.00 1.85
2140 2309 1.302366 CATGCTGATTGCCTCGCTTA 58.698 50.000 0.00 0.00 42.00 3.09
2141 2310 2.001361 GCATGCTGATTGCCTCGCTT 62.001 55.000 11.37 0.00 42.00 4.68
2142 2311 2.478890 GCATGCTGATTGCCTCGCT 61.479 57.895 11.37 0.00 42.00 4.93
2143 2312 2.025727 GCATGCTGATTGCCTCGC 59.974 61.111 11.37 0.00 42.00 5.03
2144 2313 2.326897 CGCATGCTGATTGCCTCG 59.673 61.111 17.13 0.00 42.00 4.63
2145 2314 1.063649 CACGCATGCTGATTGCCTC 59.936 57.895 17.13 0.00 42.00 4.70
2146 2315 0.750546 ATCACGCATGCTGATTGCCT 60.751 50.000 20.25 5.87 42.00 4.75
2147 2316 0.101759 AATCACGCATGCTGATTGCC 59.898 50.000 28.87 0.00 42.00 4.52
2148 2317 1.474017 GAATCACGCATGCTGATTGC 58.526 50.000 31.91 23.50 38.27 3.56
2149 2318 1.738432 CGAATCACGCATGCTGATTG 58.262 50.000 31.91 23.84 38.27 2.67
2169 2338 2.096496 GCAGCCAAGCATACAGTACAAG 59.904 50.000 0.00 0.00 0.00 3.16
2194 2363 9.042008 GCATCTCTTATTTTAAATCGACAGGTA 57.958 33.333 0.00 0.00 0.00 3.08
2195 2364 7.770897 AGCATCTCTTATTTTAAATCGACAGGT 59.229 33.333 0.00 0.00 0.00 4.00
2197 2366 8.607459 ACAGCATCTCTTATTTTAAATCGACAG 58.393 33.333 0.00 0.00 0.00 3.51
2198 2367 8.492673 ACAGCATCTCTTATTTTAAATCGACA 57.507 30.769 0.00 0.00 0.00 4.35
2201 2370 9.643652 GAGAACAGCATCTCTTATTTTAAATCG 57.356 33.333 0.00 0.00 42.12 3.34
2202 2371 9.643652 CGAGAACAGCATCTCTTATTTTAAATC 57.356 33.333 11.03 0.00 43.00 2.17
2203 2372 8.616076 CCGAGAACAGCATCTCTTATTTTAAAT 58.384 33.333 11.03 0.00 43.00 1.40
2204 2373 7.414098 GCCGAGAACAGCATCTCTTATTTTAAA 60.414 37.037 11.03 0.00 43.00 1.52
2207 2376 4.333926 GCCGAGAACAGCATCTCTTATTTT 59.666 41.667 11.03 0.00 43.00 1.82
2209 2378 3.118629 TGCCGAGAACAGCATCTCTTATT 60.119 43.478 11.03 0.00 43.00 1.40
2211 2380 1.824852 TGCCGAGAACAGCATCTCTTA 59.175 47.619 11.03 0.00 43.00 2.10
2274 2446 5.149973 TGTGCCAAAATGTTGCAATAGAT 57.850 34.783 0.59 0.00 33.01 1.98
2277 2449 5.530171 ACAAATGTGCCAAAATGTTGCAATA 59.470 32.000 0.59 0.00 33.01 1.90
2292 2464 3.182967 TCGGTGAACAAAACAAATGTGC 58.817 40.909 0.00 0.00 0.00 4.57
2295 2467 5.347364 ACAAGTTCGGTGAACAAAACAAATG 59.653 36.000 11.81 1.62 44.11 2.32
2296 2468 5.474825 ACAAGTTCGGTGAACAAAACAAAT 58.525 33.333 11.81 0.00 44.11 2.32
2304 2486 1.295792 GCTGACAAGTTCGGTGAACA 58.704 50.000 11.81 0.00 44.11 3.18
2349 2531 3.801293 GCAGTACTGAACTAAACCGTGGT 60.801 47.826 27.08 0.00 35.76 4.16
2368 2550 1.073216 CTCGTTGTCCGCTACTGCAG 61.073 60.000 13.48 13.48 39.64 4.41
2369 2551 1.080772 CTCGTTGTCCGCTACTGCA 60.081 57.895 0.00 0.00 39.64 4.41
2370 2552 0.666577 AACTCGTTGTCCGCTACTGC 60.667 55.000 0.00 0.00 36.19 4.40
2371 2553 2.624316 TAACTCGTTGTCCGCTACTG 57.376 50.000 0.00 0.00 36.19 2.74
2372 2554 3.863142 ATTAACTCGTTGTCCGCTACT 57.137 42.857 0.00 0.00 36.19 2.57
2373 2555 3.483085 GCAATTAACTCGTTGTCCGCTAC 60.483 47.826 0.00 0.00 36.19 3.58
2374 2556 2.669434 GCAATTAACTCGTTGTCCGCTA 59.331 45.455 0.00 0.00 36.19 4.26
2375 2557 1.463444 GCAATTAACTCGTTGTCCGCT 59.537 47.619 0.00 0.00 36.19 5.52
2376 2558 1.195900 TGCAATTAACTCGTTGTCCGC 59.804 47.619 0.00 0.00 36.19 5.54
2377 2559 2.222213 TGTGCAATTAACTCGTTGTCCG 59.778 45.455 0.00 0.00 38.13 4.79
2378 2560 3.496884 TCTGTGCAATTAACTCGTTGTCC 59.503 43.478 0.00 0.00 0.00 4.02
2379 2561 4.725556 TCTGTGCAATTAACTCGTTGTC 57.274 40.909 0.00 0.00 0.00 3.18
2380 2562 4.574828 ACTTCTGTGCAATTAACTCGTTGT 59.425 37.500 0.00 0.00 0.00 3.32
2381 2563 5.095691 ACTTCTGTGCAATTAACTCGTTG 57.904 39.130 0.00 0.00 0.00 4.10
2382 2564 5.178809 GGTACTTCTGTGCAATTAACTCGTT 59.821 40.000 0.00 0.00 0.00 3.85
2454 2636 5.419788 TGGACTAATATTGGTACTGACACGT 59.580 40.000 14.59 0.00 0.00 4.49
2473 2655 7.628769 AGTTCAATTTGCAAAAATTTGGACT 57.371 28.000 23.42 23.42 38.25 3.85
2838 3051 2.121948 CCCTAACCCTAACCCTGTACC 58.878 57.143 0.00 0.00 0.00 3.34
2962 3178 2.092429 CCAGCTCAAGCCCCTTGTAATA 60.092 50.000 0.00 0.00 41.66 0.98
3011 3227 2.507058 ACAAGCCTCTTAGATGCCATGA 59.493 45.455 15.63 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.